AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480021409.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480021409.01.T01 MTR_4g076980 92.737 537 30 2 1 537 1 528 0.0 897
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480021409.01.T01 AT1G51450 56.696 448 169 5 17 447 70 509 5.76e-160 465

Find 147 sgRNAs with CRISPR-Local

Find 376 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGAATTTGGTTTGGTATAA+AGG 0.175383 4:-57610121 MsG0480021409.01.T01:CDS
TTTGAAAATCAAGTTGAAAA+TGG 0.186697 4:-57607233 MsG0480021409.01.T01:CDS
GGGTATGATGGGAATAGTTT+TGG 0.250397 4:-57610277 MsG0480021409.01.T01:CDS
TTAACCTCCGGCAACGAAAT+TGG 0.268536 4:+57610763 None:intergenic
TATGGTGAAGGTGATGTTAT+TGG 0.268837 4:-57610190 MsG0480021409.01.T01:CDS
AGATAAAGGTAGTGAGGTTA+GGG 0.291160 4:-57610360 MsG0480021409.01.T01:CDS
GAGATAAAGGTAGTGAGGTT+AGG 0.301462 4:-57610361 MsG0480021409.01.T01:CDS
AAGGCTTTGAGGGAGAATTA+TGG 0.304820 4:-57610223 MsG0480021409.01.T01:CDS
TCAACCATTGGCTTGGGAAT+TGG 0.306015 4:+57607272 None:intergenic
TTGAAAATCAAGTTGAAAAT+GGG 0.342475 4:-57607232 MsG0480021409.01.T01:CDS
ATGGTGAAGGTGATGTTATT+GGG 0.345667 4:-57610189 MsG0480021409.01.T01:CDS
GGTGGATCTTCCTTAGCATC+TGG 0.361382 4:+57610079 None:intergenic
GGAAGAACCAATTTCGTTGC+CGG 0.373865 4:-57610770 MsG0480021409.01.T01:CDS
GTTCGTGTGGTTGTTATTGT+TGG 0.379535 4:+57610588 None:intergenic
AGGCTTTGAGGGAGAATTAT+GGG 0.380543 4:-57610222 MsG0480021409.01.T01:CDS
AATGGAGAAGGGTGATTTGC+AGG 0.380670 4:-57610308 MsG0480021409.01.T01:CDS
GAAAGTTGCTTCTGCTTCTT+CGG 0.383566 4:+57610811 None:intergenic
GACTAACCAGGCACAACTTT+AGG 0.383651 4:+57610058 None:intergenic
TGTCTCCACCGTGGTTGATA+TGG 0.383829 4:-57610992 MsG0480021409.01.T01:CDS
CAGGCACCAGTTGGGTATGA+TGG 0.386637 4:-57610289 MsG0480021409.01.T01:CDS
TCCCTCCAACGACGGAAAAT+CGG 0.387502 4:-57610935 MsG0480021409.01.T01:CDS
AGGTGGTTCGGCGGAGGGTG+CGG 0.402714 4:+57611041 None:intergenic
CAAAAGGGTATAGAATGGTT+AGG 0.407504 4:-57610420 MsG0480021409.01.T01:CDS
GGAAGCAGGTGGTTCGGCGG+AGG 0.415371 4:+57611035 None:intergenic
AATTATGGGGATGAGGGTTA+TGG 0.418179 4:-57610208 MsG0480021409.01.T01:CDS
TTGAATGAGAGTAAATCAAA+TGG 0.425174 4:-57607179 MsG0480021409.01.T01:CDS
GGTTCTTCTTCATCTTCATC+AGG 0.425618 4:+57610838 None:intergenic
TGCTGCTGCTGTGTCAATTC+CGG 0.425892 4:-57610734 MsG0480021409.01.T01:CDS
GGTGGAGGAAGCAGGTGGTT+CGG 0.429695 4:+57611029 None:intergenic
TGCTTCTGCTTCTTCGGAAG+CGG 0.430953 4:+57610817 None:intergenic
TTTGGGTATAGGGATATTGA+TGG 0.432413 4:-57610259 MsG0480021409.01.T01:CDS
GGTTCGACGGTGGAGGAAGC+AGG 0.436928 4:+57611021 None:intergenic
TTGACTGAGAAGAAATCTAA+TGG 0.437022 4:-57607206 MsG0480021409.01.T01:CDS
CGAAGAGGAAGATGAAGAAA+TGG 0.437298 4:-57611091 MsG0480021409.01.T01:CDS
GAAATTGGTTCTTCCTTGAC+AGG 0.440351 4:+57610778 None:intergenic
AGGGAGAATTATGGGGATGA+GGG 0.442350 4:-57610214 MsG0480021409.01.T01:CDS
TTCCTCTTCGTCTTTGTATG+TGG 0.447669 4:+57611104 None:intergenic
TTAAGTGCAGGGAGCACAAA+AGG 0.448508 4:-57610436 MsG0480021409.01.T01:CDS
GTAAGATTCATAAGGCTTTG+AGG 0.449334 4:-57610234 MsG0480021409.01.T01:CDS
AGTGAGGATAGGTTAAGTGC+AGG 0.449423 4:-57610448 MsG0480021409.01.T01:CDS
TGCACAGTTAAGTTCAACTT+TGG 0.451377 4:-57607335 MsG0480021409.01.T01:CDS
TAAGATTCATAAGGCTTTGA+GGG 0.456790 4:-57610233 MsG0480021409.01.T01:CDS
GTTGTTGTTGTGACGGTTGA+AGG 0.457335 4:+57611063 None:intergenic
GTAGCTTTCAAAGACCTCTA+TGG 0.460094 4:-57607410 MsG0480021409.01.T01:CDS
GGAACTTCAACCATTGGCTT+GGG 0.460214 4:+57607266 None:intergenic
TAGGGCAACAAGAGGGGTAG+TGG 0.460385 4:-57610401 MsG0480021409.01.T01:CDS
GTAGTGAGGTTAGGGGAGAG+TGG 0.460406 4:-57610352 MsG0480021409.01.T01:CDS
AGGAACTTCAACCATTGGCT+TGG 0.462086 4:+57607265 None:intergenic
AAGTTGAGTTGAGTGAGGAT+AGG 0.463307 4:-57610459 MsG0480021409.01.T01:CDS
TTTCGGTGAATTCTTCTGTT+CGG 0.464189 4:+57610876 None:intergenic
TCGACTGAGAAGAAATCAAA+TGG 0.469958 4:-57607071 MsG0480021409.01.T01:CDS
TCGACTGAGAAGAAATCAAA+TGG 0.469958 4:-57607098 MsG0480021409.01.T01:CDS
ATGGTTGAAGTTCCTCATCA+TGG 0.472322 4:-57607257 MsG0480021409.01.T01:CDS
TGATGGGAGTAAGATTCATA+AGG 0.484252 4:-57610242 MsG0480021409.01.T01:CDS
TCGTCTGAAAGGAAATCAAA+TGG 0.485827 4:-57607125 MsG0480021409.01.T01:CDS
TCGACTGTGAGGAAATCAAC+AGG 0.485841 4:-57607152 MsG0480021409.01.T01:CDS
GATAAACATATCTTCATCTC+CGG 0.486302 4:+57610502 None:intergenic
GGAGCAAACTTATCTCCATC+AGG 0.486308 4:+57610151 None:intergenic
GAGGGAGAATTATGGGGATG+AGG 0.488008 4:-57610215 MsG0480021409.01.T01:CDS
TTGTCAGGAAACCTCTGTGC+TGG 0.493321 4:+57610538 None:intergenic
GAAGCAGGTGGTTCGGCGGA+GGG 0.494154 4:+57611036 None:intergenic
GTCGTCGCTGTTCCATTCGC+CGG 0.498211 4:+57610700 None:intergenic
TTCGCCGGTGTGGTTGTAGC+CGG 0.498253 4:+57610715 None:intergenic
AGTTAAGTTCAACTTTGGTC+CGG 0.504875 4:-57607330 MsG0480021409.01.T01:CDS
CTATTCCCATCATACCCAAC+TGG 0.505256 4:+57610283 None:intergenic
TGCTTATAATCCAGATGCTA+AGG 0.510784 4:-57610089 MsG0480021409.01.T01:CDS
CTTCTGTTCGGCAGAGTCGT+CGG 0.512067 4:+57610888 None:intergenic
TTGGGTATAGGGATATTGAT+GGG 0.515535 4:-57610258 MsG0480021409.01.T01:CDS
AAAAGGGTATAGAATGGTTA+GGG 0.519863 4:-57610419 MsG0480021409.01.T01:CDS
AGCGGGTGGTTCGACGGTGG+AGG 0.521228 4:+57611014 None:intergenic
GAAGAAATCAGATGAAGAGG+TGG 0.523261 4:-57606955 MsG0480021409.01.T01:CDS
TTCCTCATGATTTCAATGAA+CGG 0.525635 4:-57607295 MsG0480021409.01.T01:CDS
GAGAGTGGACATACTCGGTT+GGG 0.527401 4:-57610337 MsG0480021409.01.T01:CDS
GGTGATTTGCAGGCACCAGT+TGG 0.528516 4:-57610298 MsG0480021409.01.T01:CDS
ATCAACCACGGTGGAGACAG+CGG 0.529152 4:+57610996 None:intergenic
GCTACAACCACACCGGCGAA+TGG 0.531990 4:-57610712 MsG0480021409.01.T01:CDS
AGAGTATACATTGAAGCAGC+AGG 0.532295 4:+57607374 None:intergenic
GGGGATGAGGGTTATGGTGA+AGG 0.534213 4:-57610202 MsG0480021409.01.T01:CDS
AACAATAACAACCACACGAA+CGG 0.535403 4:-57610586 MsG0480021409.01.T01:CDS
TGATGAGGAACTTCAACCAT+TGG 0.535810 4:+57607260 None:intergenic
GGCTTTGAGGGAGAATTATG+GGG 0.538168 4:-57610221 MsG0480021409.01.T01:CDS
AGAGTCGTCGGAGGGTTCAT+CGG 0.539004 4:+57610900 None:intergenic
GTGATTTGCAGGCACCAGTT+GGG 0.540685 4:-57610297 MsG0480021409.01.T01:CDS
GGAGACAGCGGGTGGTTCGA+CGG 0.541479 4:+57611008 None:intergenic
GTTGGGTTGGACAATGGAGA+AGG 0.544198 4:-57610320 MsG0480021409.01.T01:CDS
CGCTGTTCCATTCGCCGGTG+TGG 0.544512 4:+57610705 None:intergenic
GCAACAAGAGGGGTAGTGGA+AGG 0.547738 4:-57610397 MsG0480021409.01.T01:CDS
GAATGGTTAGGGCAACAAGA+GGG 0.550128 4:-57610408 MsG0480021409.01.T01:CDS
GAGGGGTAGTGGAAGGAGCT+TGG 0.553509 4:-57610390 MsG0480021409.01.T01:CDS
TGAAAATCAAGTTGAAAATG+GGG 0.558856 4:-57607231 MsG0480021409.01.T01:CDS
GATCCACCTAAAGTTGTGCC+TGG 0.560970 4:-57610064 MsG0480021409.01.T01:intron
AGGCACCAGTTGGGTATGAT+GGG 0.561997 4:-57610288 MsG0480021409.01.T01:CDS
GCAGCAGCATTGTTAACCTC+CGG 0.563639 4:+57610751 None:intergenic
GGCCGTTCATTGAAATCATG+AGG 0.564427 4:+57607293 None:intergenic
CAACAGGAGAGTCGTCTGAA+AGG 0.564803 4:-57607136 MsG0480021409.01.T01:CDS
GGAGAAGAAATCAGATGAAG+AGG 0.564827 4:-57606958 MsG0480021409.01.T01:CDS
ACCACCACTCCCTCCAACGA+CGG 0.564951 4:-57610943 MsG0480021409.01.T01:CDS
TCAACCACGGTGGAGACAGC+GGG 0.567122 4:+57610997 None:intergenic
GGAGAAGAAATCAGATGAAG+AGG 0.571105 4:-57606985 MsG0480021409.01.T01:CDS
GGAGAAGAAATCAGATGAAG+AGG 0.571105 4:-57607012 MsG0480021409.01.T01:CDS
GAAATCAGATGAAGAGGCGA+AGG 0.572048 4:-57606979 MsG0480021409.01.T01:CDS
GAAATCAGATGAAGAGGCGA+AGG 0.572048 4:-57607006 MsG0480021409.01.T01:CDS
TGTTCGGCAGAGTCGTCGGA+GGG 0.573277 4:+57610892 None:intergenic
TGTCTTCTCCACCGTTCGTG+TGG 0.575419 4:+57610575 None:intergenic
TTCCTCTCTGAACCCTGTCA+AGG 0.578436 4:-57610791 MsG0480021409.01.T01:CDS
GAGCACAAAAGGGTATAGAA+TGG 0.579497 4:-57610425 MsG0480021409.01.T01:CDS
TACTCGGTTGGGTTGGACAA+TGG 0.580187 4:-57610326 MsG0480021409.01.T01:CDS
TCCGTCGTTGGAGGGAGTGG+TGG 0.584744 4:+57610942 None:intergenic
CTGTTCGGCAGAGTCGTCGG+AGG 0.586497 4:+57610891 None:intergenic
GGAGAAAGTTGAGTTGAGTG+AGG 0.590150 4:-57610464 MsG0480021409.01.T01:CDS
GGGTGCGGTTGTTGTTGTGA+CGG 0.590325 4:+57611056 None:intergenic
AAAATCACATGGAGAGTCGA+AGG 0.593858 4:-57607033 MsG0480021409.01.T01:CDS
GTGGACATACTCGGTTGGGT+TGG 0.594702 4:-57610333 MsG0480021409.01.T01:CDS
TAAGTGCAGGGAGCACAAAA+GGG 0.599357 4:-57610435 MsG0480021409.01.T01:CDS
TAGGGGAGAGTGGACATACT+CGG 0.602020 4:-57610342 MsG0480021409.01.T01:CDS
TCGTCGGAGGGTTCATCGGA+GGG 0.603476 4:+57610904 None:intergenic
TGTGGCTTGAAGTGTATCCA+TGG 0.604461 4:+57611122 None:intergenic
GACAGCGGGTGGTTCGACGG+TGG 0.608842 4:+57611011 None:intergenic
GGAGAGTGGACATACTCGGT+TGG 0.608971 4:-57610338 MsG0480021409.01.T01:CDS
GTGAGGATAGGTTAAGTGCA+GGG 0.610539 4:-57610447 MsG0480021409.01.T01:CDS
TAACCAGGCACAACTTTAGG+TGG 0.615470 4:+57610061 None:intergenic
GTCGTCGGAGGGTTCATCGG+AGG 0.615642 4:+57610903 None:intergenic
TTGGGTTGGACAATGGAGAA+GGG 0.615758 4:-57610319 MsG0480021409.01.T01:CDS
AAATTGGTTCTTCCTTGACA+GGG 0.631947 4:+57610779 None:intergenic
GATAAAGGTAGTGAGGTTAG+GGG 0.636348 4:-57610359 MsG0480021409.01.T01:CDS
GGAGGAAGCAGGTGGTTCGG+CGG 0.637457 4:+57611032 None:intergenic
AATGGTTAGGGCAACAAGAG+GGG 0.638305 4:-57610407 MsG0480021409.01.T01:CDS
ACGGCCAATTCCCAAGCCAA+TGG 0.642692 4:-57607276 MsG0480021409.01.T01:CDS
AGAACCAATTTCGTTGCCGG+AGG 0.644292 4:-57610767 MsG0480021409.01.T01:CDS
TTTATCGAAAGTTTACAAAG+CGG 0.645394 4:-57610485 MsG0480021409.01.T01:CDS
GATAGTAACGACCGCCATAG+AGG 0.646862 4:+57607396 None:intergenic
TGACAAAAGTGACGATACAC+CGG 0.648124 4:-57610521 MsG0480021409.01.T01:CDS
AGCCACATACAAAGACGAAG+AGG 0.649729 4:-57611106 MsG0480021409.01.T01:CDS
AATAACAACCACACGAACGG+TGG 0.652994 4:-57610583 MsG0480021409.01.T01:CDS
TCGACGGTGGAGGAAGCAGG+TGG 0.654043 4:+57611024 None:intergenic
TGGTTTGGTATAAAGGACAA+CGG 0.659021 4:-57610114 MsG0480021409.01.T01:CDS
GGAGTGGTGGTAGTAATGAG+AGG 0.659727 4:+57610955 None:intergenic
ACCACGGTGGAGACAGCGGG+TGG 0.665511 4:+57611000 None:intergenic
AGAATGGTTAGGGCAACAAG+AGG 0.674035 4:-57610409 MsG0480021409.01.T01:CDS
CAAATGGAGAGTCGACTGTG+AGG 0.690995 4:-57607163 MsG0480021409.01.T01:CDS
TTCCTTGACAGGGTTCAGAG+AGG 0.691426 4:+57610789 None:intergenic
GCTTTCAAAGACCTCTATGG+CGG 0.700991 4:-57607407 MsG0480021409.01.T01:CDS
TGTTAATTCCATATCAACCA+CGG 0.707113 4:+57610984 None:intergenic
ACCACCCGCTGTCTCCACCG+TGG 0.719787 4:-57611001 MsG0480021409.01.T01:CDS
TTCTGATAACACCAGCACAG+AGG 0.723216 4:-57610549 MsG0480021409.01.T01:CDS
TAATTCCATATCAACCACGG+TGG 0.756610 4:+57610987 None:intergenic
AATTCCGGCTACAACCACAC+CGG 0.762987 4:-57610719 MsG0480021409.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCATAAATTCATAATATATA+GGG - Chr4:57610093-57610112 MsG0480021409.01.T01:CDS 10.0%
!!! TATACCTTTTTATATATTAT+CGG + Chr4:57608592-57608611 None:intergenic 10.0%
!! ATTATGAATTTATGACTAAT+GGG + Chr4:57610088-57610107 None:intergenic 15.0%
!! GTCATAAATTCATAATATAT+AGG - Chr4:57610092-57610111 MsG0480021409.01.T01:CDS 15.0%
!! TATAGTATATAGTTAAGAAT+TGG - Chr4:57608348-57608367 MsG0480021409.01.T01:intron 15.0%
!! TATTATGAATTTATGACTAA+TGG + Chr4:57610089-57610108 None:intergenic 15.0%
!! TCTTAACTATATACTATATA+TGG + Chr4:57608346-57608365 None:intergenic 15.0%
!!! AAACAACATTTCAATTTTAA+AGG + Chr4:57610464-57610483 None:intergenic 15.0%
!!! AATTTTGAACATTATTGATA+GGG - Chr4:57608083-57608102 MsG0480021409.01.T01:intron 15.0%
!! AAAAAAACATTAAAAGTGAC+TGG + Chr4:57608465-57608484 None:intergenic 20.0%
!! AAAAACAAAAACAACAACAA+CGG - Chr4:57607442-57607461 MsG0480021409.01.T01:CDS 20.0%
!! AAATCGATAGTTCATTATTT+AGG - Chr4:57608204-57608223 MsG0480021409.01.T01:intron 20.0%
!! AATATCTGAATATTCACTAT+TGG - Chr4:57609988-57610007 MsG0480021409.01.T01:intron 20.0%
!! AATCGATAGTTCATTATTTA+GGG - Chr4:57608205-57608224 MsG0480021409.01.T01:intron 20.0%
!! AGAAAAAGAATAACAATGTA+TGG - Chr4:57607392-57607411 MsG0480021409.01.T01:CDS 20.0%
!! ATATTCAGATATTCAGAATA+AGG + Chr4:57609981-57610000 None:intergenic 20.0%
!! GAAAAAGAATAACAATGTAT+GGG - Chr4:57607393-57607412 MsG0480021409.01.T01:CDS 20.0%
!! TTCACCGATAATATATAAAA+AGG - Chr4:57608585-57608604 MsG0480021409.01.T01:intron 20.0%
!! TTTCATCAACAGATATAATA+TGG + Chr4:57608626-57608645 None:intergenic 20.0%
!!! GAATTTTGAACATTATTGAT+AGG - Chr4:57608082-57608101 MsG0480021409.01.T01:intron 20.0%
!!! TGGTAAGATTTATTTTTTGT+GGG + Chr4:57608735-57608754 None:intergenic 20.0%
!!! TTGAAAATCAAGTTGAAAAT+GGG - Chr4:57610826-57610845 MsG0480021409.01.T01:CDS 20.0%
!!! TTGAATTCCTTAATCTTTTT+CGG - Chr4:57609837-57609856 MsG0480021409.01.T01:intron 20.0%
!!! TTTGAAAATCAAGTTGAAAA+TGG - Chr4:57610825-57610844 MsG0480021409.01.T01:CDS 20.0%
!!! TTTTATATTAATTTGCCTGA+TGG - Chr4:57607892-57607911 MsG0480021409.01.T01:intron 20.0%
! AAAACATATTTAGCAAGACT+GGG - Chr4:57609432-57609451 MsG0480021409.01.T01:intron 25.0%
! AATATTCACTATTGGAAGTT+AGG - Chr4:57609996-57610015 MsG0480021409.01.T01:intron 25.0%
! AGATGAAAAATCCATAATGT+TGG - Chr4:57609138-57609157 MsG0480021409.01.T01:intron 25.0%
! ATACTATATATGGACTTCAT+AGG + Chr4:57608336-57608355 None:intergenic 25.0%
! ATCGATAGTTCATTATTTAG+GGG - Chr4:57608206-57608225 MsG0480021409.01.T01:intron 25.0%
! ATGCTCTTAAGTATATTGAT+TGG - Chr4:57609620-57609639 MsG0480021409.01.T01:intron 25.0%
! CCTACTATATTAATGAATCT+AGG - Chr4:57609025-57609044 MsG0480021409.01.T01:intron 25.0%
! CCTAGATTCATTAATATAGT+AGG + Chr4:57609028-57609047 None:intergenic 25.0%
! GAGATATCTTTCTTCAAAAA+TGG - Chr4:57610612-57610631 MsG0480021409.01.T01:CDS 25.0%
! GATGAAAAATCCATAATGTT+GGG - Chr4:57609139-57609158 MsG0480021409.01.T01:intron 25.0%
! GATTCATTAATATAGTAGGA+AGG + Chr4:57609024-57609043 None:intergenic 25.0%
! GTATGGAATGAAAATTCAAT+TGG - Chr4:57610558-57610577 MsG0480021409.01.T01:CDS 25.0%
! TACTATATATGGACTTCATA+GGG + Chr4:57608335-57608354 None:intergenic 25.0%
! TTGAATGAGAGTAAATCAAA+TGG - Chr4:57610879-57610898 MsG0480021409.01.T01:CDS 25.0%
! TTTATCGAAAGTTTACAAAG+CGG - Chr4:57607573-57607592 MsG0480021409.01.T01:intron 25.0%
!! ACAGTTTGATAATAATCACA+AGG + Chr4:57608129-57608148 None:intergenic 25.0%
!! ATTATGGATTTTTCATCTGA+TGG + Chr4:57609136-57609155 None:intergenic 25.0%
!! CAAACCAAATTCTGATTTTT+CGG + Chr4:57607931-57607950 None:intergenic 25.0%
!! TGAAGAAATAGAAAACCTTT+TGG + Chr4:57609413-57609432 None:intergenic 25.0%
!! TTTGCTAGTTTATTATCTCA+TGG - Chr4:57608179-57608198 MsG0480021409.01.T01:intron 25.0%
!!! AAATAACCGTTTTTTGTGAA+AGG - Chr4:57608645-57608664 MsG0480021409.01.T01:intron 25.0%
!!! ATATTGATTGGTTTAGTCAT+GGG - Chr4:57609632-57609651 MsG0480021409.01.T01:intron 25.0%
!!! CTGTTTTATGTTTTTGATGT+TGG - Chr4:57608060-57608079 MsG0480021409.01.T01:intron 25.0%
!!! GGTAAGATTTATTTTTTGTG+GGG + Chr4:57608734-57608753 None:intergenic 25.0%
!!! GTAAGATTTATTTTTTGTGG+GGG + Chr4:57608733-57608752 None:intergenic 25.0%
!!! GTGGTAAGATTTATTTTTTG+TGG + Chr4:57608736-57608755 None:intergenic 25.0%
!!! TATATTGATTGGTTTAGTCA+TGG - Chr4:57609631-57609650 MsG0480021409.01.T01:intron 25.0%
!!! TGAAAATCAAGTTGAAAATG+GGG - Chr4:57610827-57610846 MsG0480021409.01.T01:CDS 25.0%
!!! TGTAAGTTGTATTTTGAGTA+TGG - Chr4:57610541-57610560 MsG0480021409.01.T01:CDS 25.0%
!!! TTGCTTAACTTGTTTTAGAA+AGG - Chr4:57610375-57610394 MsG0480021409.01.T01:CDS 25.0%
AACAATATCTATAGCAGTGT+AGG - Chr4:57608676-57608695 MsG0480021409.01.T01:intron 30.0%
ACAACTATTTGTGTGTTTGT+TGG + Chr4:57610300-57610319 None:intergenic 30.0%
ACAGATACATGATACAATAG+AGG + Chr4:57609084-57609103 None:intergenic 30.0%
ACCACTAATACAATATGCAA+AGG - Chr4:57609733-57609752 MsG0480021409.01.T01:intron 30.0%
ACCTTTGCATATTGTATTAG+TGG + Chr4:57609737-57609756 None:intergenic 30.0%
ATAGAATTTAGACACGCTTA+AGG + Chr4:57608301-57608320 None:intergenic 30.0%
ATAGTTCATTATTTAGGGGT+GGG - Chr4:57608210-57608229 MsG0480021409.01.T01:intron 30.0%
ATATATTATCGGTGAAGAAC+AGG + Chr4:57608581-57608600 None:intergenic 30.0%
ATCTGATAAAACAGAGACTA+CGG - Chr4:57609260-57609279 MsG0480021409.01.T01:intron 30.0%
ATCTTCAGAAAAACAAGAGA+TGG + Chr4:57609056-57609075 None:intergenic 30.0%
ATGTCTCACTTAACGAAAAA+TGG + Chr4:57609662-57609681 None:intergenic 30.0%
ATTCAGAATAAGGAACTCAA+TGG + Chr4:57609971-57609990 None:intergenic 30.0%
CAAAACATATTTAGCAAGAC+TGG - Chr4:57609431-57609450 MsG0480021409.01.T01:intron 30.0%
CAAAATACAACTTACAGCAA+AGG + Chr4:57610537-57610556 None:intergenic 30.0%
CAAGGAATATAGTTGTTCAA+TGG + Chr4:57610491-57610510 None:intergenic 30.0%
CATAACCAAGTTTACAATCA+AGG + Chr4:57608273-57608292 None:intergenic 30.0%
CGAAAAATCAGAATTTGGTT+TGG - Chr4:57607929-57607948 MsG0480021409.01.T01:intron 30.0%
CGATCTAGATTTGATTCTAT+GGG - Chr4:57609767-57609786 MsG0480021409.01.T01:intron 30.0%
CTTGATTGTAAACTTGGTTA+TGG - Chr4:57608271-57608290 MsG0480021409.01.T01:intron 30.0%
GATAAACATATCTTCATCTC+CGG + Chr4:57607559-57607578 None:intergenic 30.0%
GTTAAGAATTGGATATGCAT+CGG - Chr4:57608359-57608378 MsG0480021409.01.T01:intron 30.0%
TAGAATTTAGACACGCTTAA+GGG + Chr4:57608300-57608319 None:intergenic 30.0%
TATCTCCTTGATTGTAAACT+TGG - Chr4:57608265-57608284 MsG0480021409.01.T01:intron 30.0%
TCCATATATGAACTGTATCT+AGG + Chr4:57608530-57608549 None:intergenic 30.0%
TCGATCTAGATTTGATTCTA+TGG - Chr4:57609766-57609785 MsG0480021409.01.T01:intron 30.0%
TGCTATAGATATTGTTCCAT+CGG + Chr4:57608672-57608691 None:intergenic 30.0%
TGTTAATTCCATATCAACCA+CGG + Chr4:57607077-57607096 None:intergenic 30.0%
TTCAAAAATGGTGTATGTCA+AGG - Chr4:57610624-57610643 MsG0480021409.01.T01:CDS 30.0%
TTCAGAATAAGGAACTCAAT+GGG + Chr4:57609970-57609989 None:intergenic 30.0%
TTCCTCATGATTTCAATGAA+CGG - Chr4:57610763-57610782 MsG0480021409.01.T01:CDS 30.0%
TTGACTGAGAAGAAATCTAA+TGG - Chr4:57610852-57610871 MsG0480021409.01.T01:CDS 30.0%
! AAAAGGGTATAGAATGGTTA+GGG - Chr4:57607639-57607658 MsG0480021409.01.T01:intron 30.0%
! TAAGATTCATAAGGCTTTGA+GGG - Chr4:57607825-57607844 MsG0480021409.01.T01:intron 30.0%
! TGATTTTCAAAACCATGATG+AGG + Chr4:57610816-57610835 None:intergenic 30.0%
! TTTGGAGCTTCTTTAAATCA+CGG + Chr4:57610233-57610252 None:intergenic 30.0%
!! CAGAATTTGGTTTGGTATAA+AGG - Chr4:57607937-57607956 MsG0480021409.01.T01:intron 30.0%
!!! AGCTTGGTATTTTGAGATAA+AGG - Chr4:57607684-57607703 MsG0480021409.01.T01:intron 30.0%
!!! ATTTTGAGATAAAGGTAGTG+AGG - Chr4:57607692-57607711 MsG0480021409.01.T01:intron 30.0%
!!! CTTAATCTTTTTCGGAAACT+CGG - Chr4:57609845-57609864 MsG0480021409.01.T01:intron 30.0%
AAAACTTGGCAACTGTATGT+TGG - Chr4:57609477-57609496 MsG0480021409.01.T01:intron 35.0%
AAAATCCATAATGTTGGGAC+CGG - Chr4:57609144-57609163 MsG0480021409.01.T01:intron 35.0%
AAACTTGGCAACTGTATGTT+GGG - Chr4:57609478-57609497 MsG0480021409.01.T01:intron 35.0%
AACAATAACAACCACACGAA+CGG - Chr4:57607472-57607491 MsG0480021409.01.T01:intron 35.0%
AACCAGAAAAAAGATGACAC+CGG + Chr4:57608833-57608852 None:intergenic 35.0%
AGATAAAGGTAGTGAGGTTA+GGG - Chr4:57607698-57607717 MsG0480021409.01.T01:intron 35.0%
AGTTAAGTTCAACTTTGGTC+CGG - Chr4:57610728-57610747 MsG0480021409.01.T01:CDS 35.0%
ATCGGTCCTTTCACAAAAAA+CGG + Chr4:57608654-57608673 None:intergenic 35.0%
ATGGTGAAGGTGATGTTATT+GGG - Chr4:57607869-57607888 MsG0480021409.01.T01:intron 35.0%
ATGTACATTTAGCCTGTGTT+TGG - Chr4:57610163-57610182 MsG0480021409.01.T01:CDS 35.0%
ATGTTTCTTAGTACAACCGT+TGG + Chr4:57608415-57608434 None:intergenic 35.0%
ATTCACTATTGGAAGTTAGG+TGG - Chr4:57609999-57610018 MsG0480021409.01.T01:intron 35.0%
CATAATATATAGGGTGCGTT+AGG - Chr4:57610102-57610121 MsG0480021409.01.T01:CDS 35.0%
CCAAGACTAAGATAGAAATG+CGG + Chr4:57609804-57609823 None:intergenic 35.0%
CGAGTTTCCGAAAAAGATTA+AGG + Chr4:57609847-57609866 None:intergenic 35.0%
CTGCACAGAAAAGAGAATAT+TGG + Chr4:57610587-57610606 None:intergenic 35.0%
GATAGTTCATTATTTAGGGG+TGG - Chr4:57608209-57608228 MsG0480021409.01.T01:intron 35.0%
GCCTAGATACAGTTCATATA+TGG - Chr4:57608526-57608545 MsG0480021409.01.T01:intron 35.0%
GGTTGTACTAAGAAACATTC+TGG - Chr4:57608417-57608436 MsG0480021409.01.T01:intron 35.0%
GTAAGATTCATAAGGCTTTG+AGG - Chr4:57607824-57607843 MsG0480021409.01.T01:intron 35.0%
GTTAGGTGCACAACTTAATT+GGG - Chr4:57610119-57610138 MsG0480021409.01.T01:CDS 35.0%
TAACAGTTGTTCTGTAAGCA+AGG + Chr4:57610509-57610528 None:intergenic 35.0%
TAGTTCATTATTTAGGGGTG+GGG - Chr4:57608211-57608230 MsG0480021409.01.T01:intron 35.0%
TATGGTGAAGGTGATGTTAT+TGG - Chr4:57607868-57607887 MsG0480021409.01.T01:intron 35.0%
TCATACGAGCAAAAATCACA+TGG - Chr4:57611014-57611033 MsG0480021409.01.T01:CDS 35.0%
TCGACTGAGAAGAAATCAAA+TGG - Chr4:57610960-57610979 MsG0480021409.01.T01:CDS 35.0%
TCGTCTGAAAGGAAATCAAA+TGG - Chr4:57610933-57610952 MsG0480021409.01.T01:CDS 35.0%
TGAGGAAAAAATTCGAAGTC+CGG + Chr4:57610750-57610769 None:intergenic 35.0%
TGATGGGAGTAAGATTCATA+AGG - Chr4:57607816-57607835 MsG0480021409.01.T01:intron 35.0%
TGCACAGTTAAGTTCAACTT+TGG - Chr4:57610723-57610742 MsG0480021409.01.T01:CDS 35.0%
TGCTCCGAAAAATCAGAATT+TGG - Chr4:57607924-57607943 MsG0480021409.01.T01:intron 35.0%
TGCTTATAATCCAGATGCTA+AGG - Chr4:57607969-57607988 MsG0480021409.01.T01:intron 35.0%
TTGGGTATAGGGATATTGAT+GGG - Chr4:57607800-57607819 MsG0480021409.01.T01:intron 35.0%
TTTCGGTGAATTCTTCTGTT+CGG + Chr4:57607185-57607204 None:intergenic 35.0%
TTTGGGTATAGGGATATTGA+TGG - Chr4:57607799-57607818 MsG0480021409.01.T01:intron 35.0%
! AAATTGGTTCTTCCTTGACA+GGG + Chr4:57607282-57607301 None:intergenic 35.0%
! CAAAAGGGTATAGAATGGTT+AGG - Chr4:57607638-57607657 MsG0480021409.01.T01:intron 35.0%
! CAATATTCTCTTTTCTGTGC+AGG - Chr4:57610585-57610604 MsG0480021409.01.T01:CDS 35.0%
! CGCATTTCTATCTTAGTCTT+GGG - Chr4:57609802-57609821 MsG0480021409.01.T01:intron 35.0%
! GGTTGTTCTCTTTTCTGTTT+CGG + Chr4:57607202-57607221 None:intergenic 35.0%
! TATTTGTGTGTTTGTTGGAG+CGG + Chr4:57610295-57610314 None:intergenic 35.0%
! TGAGAACACCATCTAAAACT+TGG - Chr4:57609463-57609482 MsG0480021409.01.T01:intron 35.0%
!! GCATTTCTATCTTAGTCTTG+GGG - Chr4:57609803-57609822 MsG0480021409.01.T01:intron 35.0%
!! GGTATGATGGGAATAGTTTT+GGG - Chr4:57607782-57607801 MsG0480021409.01.T01:intron 35.0%
!! GTCTATTTTGCTATGCAATG+TGG + Chr4:57608770-57608789 None:intergenic 35.0%
!! GTCTTTTATTTGTGTTCTGC+CGG + Chr4:57609166-57609185 None:intergenic 35.0%
!! TGGTTTGGTATAAAGGACAA+CGG - Chr4:57607944-57607963 MsG0480021409.01.T01:intron 35.0%
!!! AACTGTGCAGTTTTGTTCAT+GGG + Chr4:57610712-57610731 None:intergenic 35.0%
!!! AGATTTATTTTTTGTGGGGG+TGG + Chr4:57608730-57608749 None:intergenic 35.0%
!!! ATGGGAATAGTTTTGGGTAT+AGG - Chr4:57607788-57607807 MsG0480021409.01.T01:intron 35.0%
!!! GATTTATTTTTTGTGGGGGT+GGG + Chr4:57608729-57608748 None:intergenic 35.0%
!!! TAACTGTGCAGTTTTGTTCA+TGG + Chr4:57610713-57610732 None:intergenic 35.0%
!!! TACAGTTGCCAAGTTTTAGA+TGG + Chr4:57609474-57609493 None:intergenic 35.0%
!!! TGGGAATAGTTTTGGGTATA+GGG - Chr4:57607789-57607808 MsG0480021409.01.T01:intron 35.0%
AAAATCACATGGAGAGTCGA+AGG - Chr4:57611025-57611044 MsG0480021409.01.T01:CDS 40.0%
AACAGGACAAGCTGGATTTA+AGG + Chr4:57608564-57608583 None:intergenic 40.0%
AACTTGGCAACTGTATGTTG+GGG - Chr4:57609479-57609498 MsG0480021409.01.T01:intron 40.0%
AATTATGGGGATGAGGGTTA+TGG - Chr4:57607850-57607869 MsG0480021409.01.T01:intron 40.0%
ACAAGAGAACAGAGCATGAA+AGG + Chr4:57608908-57608927 None:intergenic 40.0%
ACAGAGCATGAAAGGAACTT+AGG + Chr4:57608900-57608919 None:intergenic 40.0%
AGAGTATACATTGAAGCAGC+AGG + Chr4:57610687-57610706 None:intergenic 40.0%
AGCAGATTTGAAGACTAACC+AGG + Chr4:57608015-57608034 None:intergenic 40.0%
ATGGTTGAAGTTCCTCATCA+TGG - Chr4:57610801-57610820 MsG0480021409.01.T01:CDS 40.0%
CAAGTTTCTCGGATGTAAAG+GGG + Chr4:57609365-57609384 None:intergenic 40.0%
CAGCAACTCAGATCAAAAAC+AGG + Chr4:57608944-57608963 None:intergenic 40.0%
CATATTTAGCAAGACTGGGT+AGG - Chr4:57609436-57609455 MsG0480021409.01.T01:intron 40.0%
CATCTCTGTTGCAAGTTTCT+CGG + Chr4:57609376-57609395 None:intergenic 40.0%
CCGCATTTCTATCTTAGTCT+TGG - Chr4:57609801-57609820 MsG0480021409.01.T01:intron 40.0%
CGAAGAGGAAGATGAAGAAA+TGG - Chr4:57606967-57606986 MsG0480021409.01.T01:CDS 40.0%
CGTTAGGTGCACAACTTAAT+TGG - Chr4:57610118-57610137 MsG0480021409.01.T01:CDS 40.0%
CTAAAACCAGACACTACCAA+CGG - Chr4:57608396-57608415 MsG0480021409.01.T01:intron 40.0%
GAAAGTTGCTTCTGCTTCTT+CGG + Chr4:57607250-57607269 None:intergenic 40.0%
GAAGAAATCAGATGAAGAGG+TGG - Chr4:57611049-57611068 MsG0480021409.01.T01:CDS 40.0%
GAGATAAAGGTAGTGAGGTT+AGG - Chr4:57607697-57607716 MsG0480021409.01.T01:intron 40.0%
GATAAAGGTAGTGAGGTTAG+GGG - Chr4:57607699-57607718 MsG0480021409.01.T01:intron 40.0%
GCAAGTTTCTCGGATGTAAA+GGG + Chr4:57609366-57609385 None:intergenic 40.0%
GGAGAAGAAATCAGATGAAG+AGG - Chr4:57611046-57611065 MsG0480021409.01.T01:CDS 40.0%
GGTTCTTCTTCATCTTCATC+AGG + Chr4:57607223-57607242 None:intergenic 40.0%
GTAGCTTTCAAAGACCTCTA+TGG - Chr4:57610648-57610667 MsG0480021409.01.T01:CDS 40.0%
GTTGGCAATAAAACCACGTT+TGG + Chr4:57610269-57610288 None:intergenic 40.0%
TAATTCCATATCAACCACGG+TGG + Chr4:57607074-57607093 None:intergenic 40.0%
TGACAAAAGTGACGATACAC+CGG - Chr4:57607537-57607556 MsG0480021409.01.T01:intron 40.0%
TGATGAGGAACTTCAACCAT+TGG + Chr4:57610801-57610820 None:intergenic 40.0%
TGCAAGTTTCTCGGATGTAA+AGG + Chr4:57609367-57609386 None:intergenic 40.0%
TTAGCCTGTGTTTGGATTCA+CGG - Chr4:57610171-57610190 MsG0480021409.01.T01:CDS 40.0%
TTCCTCTTCGTCTTTGTATG+TGG + Chr4:57606957-57606976 None:intergenic 40.0%
TTGCAATCACATTCATCTGC+CGG - Chr4:57608811-57608830 MsG0480021409.01.T01:intron 40.0%
! GAAATTGGTTCTTCCTTGAC+AGG + Chr4:57607283-57607302 None:intergenic 40.0%
! GACGATTTGGATTGAGAAAC+AGG - Chr4:57608239-57608258 MsG0480021409.01.T01:intron 40.0%
! GAGATAGAAGTGTGACCAAA+AGG - Chr4:57609395-57609414 MsG0480021409.01.T01:intron 40.0%
! GAGCACAAAAGGGTATAGAA+TGG - Chr4:57607633-57607652 MsG0480021409.01.T01:intron 40.0%
! GTTCGTGTGGTTGTTATTGT+TGG + Chr4:57607473-57607492 None:intergenic 40.0%
!! AAGGCTTTGAGGGAGAATTA+TGG - Chr4:57607835-57607854 MsG0480021409.01.T01:intron 40.0%
!! AAGTTGAGTTGAGTGAGGAT+AGG - Chr4:57607599-57607618 MsG0480021409.01.T01:intron 40.0%
!! AATCACGGTGAAAAGTGCTT+TGG + Chr4:57610218-57610237 None:intergenic 40.0%
!! AGGCTTTGAGGGAGAATTAT+GGG - Chr4:57607836-57607855 MsG0480021409.01.T01:intron 40.0%
!! ATCACGGTGAAAAGTGCTTT+GGG + Chr4:57610217-57610236 None:intergenic 40.0%
!! GGGTATGATGGGAATAGTTT+TGG - Chr4:57607781-57607800 MsG0480021409.01.T01:intron 40.0%
!! TTTGGAGTGAAGCTTGCTTT+TGG + Chr4:57610251-57610270 None:intergenic 40.0%
!!! ACTGTGCAGTTTTGTTCATG+GGG + Chr4:57610711-57610730 None:intergenic 40.0%
!!! GTTTTTTGTGAAAGGACCGA+TGG - Chr4:57608653-57608672 MsG0480021409.01.T01:intron 40.0%
AACCACCAGCCAAAAATGCA+TGG + Chr4:57609694-57609713 None:intergenic 45.0%
AATAACAACCACACGAACGG+TGG - Chr4:57607475-57607494 MsG0480021409.01.T01:intron 45.0%
AATGGTTAGGGCAACAAGAG+GGG - Chr4:57607651-57607670 MsG0480021409.01.T01:intron 45.0%
ACCACCAGCCAAAAATGCAT+GGG + Chr4:57609693-57609712 None:intergenic 45.0%
ACCTCAATAGCGTGGAAAAG+TGG - Chr4:57610050-57610069 MsG0480021409.01.T01:intron 45.0%
ACTTGGCAACTGTATGTTGG+GGG - Chr4:57609480-57609499 MsG0480021409.01.T01:intron 45.0%
AGAATGGTTAGGGCAACAAG+AGG - Chr4:57607649-57607668 MsG0480021409.01.T01:intron 45.0%
AGCCACATACAAAGACGAAG+AGG - Chr4:57606952-57606971 MsG0480021409.01.T01:CDS 45.0%
AGGGAGAATTATGGGGATGA+GGG - Chr4:57607844-57607863 MsG0480021409.01.T01:intron 45.0%
AGTGAGGATAGGTTAAGTGC+AGG - Chr4:57607610-57607629 MsG0480021409.01.T01:intron 45.0%
ATGTGATTGCAAGCCCTAGT+TGG + Chr4:57608803-57608822 None:intergenic 45.0%
ATTGGATATGCATCGGAGTC+TGG - Chr4:57608366-57608385 MsG0480021409.01.T01:intron 45.0%
CAATGTGGTTCAAGAGTGAG+TGG + Chr4:57608755-57608774 None:intergenic 45.0%
CACCGCTTAAGGATATGTGA+TGG - Chr4:57608504-57608523 MsG0480021409.01.T01:intron 45.0%
CTATTCCCATCATACCCAAC+TGG + Chr4:57607778-57607797 None:intergenic 45.0%
CTGTTCTCTTGTGCATTTGC+TGG - Chr4:57608916-57608935 MsG0480021409.01.T01:intron 45.0%
GAAATCAGATGAAGAGGCGA+AGG - Chr4:57611052-57611071 MsG0480021409.01.T01:CDS 45.0%
GAATGGTTAGGGCAACAAGA+GGG - Chr4:57607650-57607669 MsG0480021409.01.T01:intron 45.0%
GACTAACCAGGCACAACTTT+AGG + Chr4:57608003-57608022 None:intergenic 45.0%
GCTTTCAAAGACCTCTATGG+CGG - Chr4:57610651-57610670 MsG0480021409.01.T01:CDS 45.0%
GGAAGAACCAATTTCGTTGC+CGG - Chr4:57607288-57607307 MsG0480021409.01.T01:CDS 45.0%
GGAGCAAACTTATCTCCATC+AGG + Chr4:57607910-57607929 None:intergenic 45.0%
GGCCATCACATATCCTTAAG+CGG + Chr4:57608509-57608528 None:intergenic 45.0%
GGCCGTTCATTGAAATCATG+AGG + Chr4:57610768-57610787 None:intergenic 45.0%
GTGAGGATAGGTTAAGTGCA+GGG - Chr4:57607611-57607630 MsG0480021409.01.T01:intron 45.0%
TAACCAGGCACAACTTTAGG+TGG + Chr4:57608000-57608019 None:intergenic 45.0%
TCATTATTTAGGGGTGGGGA+GGG - Chr4:57608215-57608234 MsG0480021409.01.T01:intron 45.0%
TCGACTGTGAGGAAATCAAC+AGG - Chr4:57610906-57610925 MsG0480021409.01.T01:CDS 45.0%
TTAACCTCCGGCAACGAAAT+TGG + Chr4:57607298-57607317 None:intergenic 45.0%
TTCATTATTTAGGGGTGGGG+AGG - Chr4:57608214-57608233 MsG0480021409.01.T01:intron 45.0%
TTCTGATAACACCAGCACAG+AGG - Chr4:57607509-57607528 MsG0480021409.01.T01:intron 45.0%
! AATGGAGAAGGGTGATTTGC+AGG - Chr4:57607750-57607769 MsG0480021409.01.T01:intron 45.0%
! AGGAACTTCAACCATTGGCT+TGG + Chr4:57610796-57610815 None:intergenic 45.0%
! CGTCATTGATTGCTTGGGAT+GGG - Chr4:57610026-57610045 MsG0480021409.01.T01:intron 45.0%
! CTAAGCCTCCCATGCATTTT+TGG - Chr4:57609682-57609701 MsG0480021409.01.T01:intron 45.0%
! GTGCTCGTCATTGATTGCTT+GGG - Chr4:57610021-57610040 MsG0480021409.01.T01:intron 45.0%
! GTTGTTGTTGTGACGGTTGA+AGG + Chr4:57606998-57607017 None:intergenic 45.0%
! TAAGTGCAGGGAGCACAAAA+GGG - Chr4:57607623-57607642 MsG0480021409.01.T01:intron 45.0%
! TCGTCATTGATTGCTTGGGA+TGG - Chr4:57610025-57610044 MsG0480021409.01.T01:intron 45.0%
! TGTAAAGGGGTGGAAGCTTT+TGG + Chr4:57609352-57609371 None:intergenic 45.0%
! TTAAGTGCAGGGAGCACAAA+AGG - Chr4:57607622-57607641 MsG0480021409.01.T01:intron 45.0%
!! GGAACTTCAACCATTGGCTT+GGG + Chr4:57610795-57610814 None:intergenic 45.0%
!! GGAGAAAGTTGAGTTGAGTG+AGG - Chr4:57607594-57607613 MsG0480021409.01.T01:intron 45.0%
!! GGCTTTGAGGGAGAATTATG+GGG - Chr4:57607837-57607856 MsG0480021409.01.T01:intron 45.0%
!! TCAACCATTGGCTTGGGAAT+TGG + Chr4:57610789-57610808 None:intergenic 45.0%
!! TCCACTTTTCCACGCTATTG+AGG + Chr4:57610054-57610073 None:intergenic 45.0%
!! TTGGGTTGGACAATGGAGAA+GGG - Chr4:57607739-57607758 MsG0480021409.01.T01:intron 45.0%
!!! GGTGTATCGTCACTTTTGTC+AGG + Chr4:57607538-57607557 None:intergenic 45.0%
!!! TATTTTTTGTGGGGGTGGGA+GGG + Chr4:57608725-57608744 None:intergenic 45.0%
!!! TGCCGGTGTCATCTTTTTTC+TGG - Chr4:57608828-57608847 MsG0480021409.01.T01:intron 45.0%
!!! TTATTTTTTGTGGGGGTGGG+AGG + Chr4:57608726-57608745 None:intergenic 45.0%
AACCATGGCAAAGCCCTGTA+TGG - Chr4:57609935-57609954 MsG0480021409.01.T01:intron 50.0%
AATTCCGGCTACAACCACAC+CGG - Chr4:57607339-57607358 MsG0480021409.01.T01:CDS 50.0%
ACCAGCCAAAAATGCATGGG+AGG + Chr4:57609690-57609709 None:intergenic 50.0%
ACTACGGCATCCAGAGAGAA+CGG - Chr4:57609276-57609295 MsG0480021409.01.T01:intron 50.0%
AGAACCAATTTCGTTGCCGG+AGG - Chr4:57607291-57607310 MsG0480021409.01.T01:CDS 50.0%
AGACCCACTCTTCACCAACT+AGG - Chr4:57608786-57608805 MsG0480021409.01.T01:intron 50.0%
AGCAAGCTTCACTCCAAACG+TGG - Chr4:57610253-57610272 MsG0480021409.01.T01:CDS 50.0%
AGGCACCAGTTGGGTATGAT+GGG - Chr4:57607770-57607789 MsG0480021409.01.T01:intron 50.0%
CAAATGGAGAGTCGACTGTG+AGG - Chr4:57610895-57610914 MsG0480021409.01.T01:CDS 50.0%
CAACAGGAGAGTCGTCTGAA+AGG - Chr4:57610922-57610941 MsG0480021409.01.T01:CDS 50.0%
CAACTGTATGTTGGGGGTGA+GGG - Chr4:57609486-57609505 MsG0480021409.01.T01:intron 50.0%
CTCTGCCAAGGAAGGAACTT+GGG + Chr4:57608987-57609006 None:intergenic 50.0%
CTTAAGCGGTGAGTCGCATA+GGG + Chr4:57608495-57608514 None:intergenic 50.0%
GACCCACTCTTCACCAACTA+GGG - Chr4:57608787-57608806 MsG0480021409.01.T01:intron 50.0%
GAGAGTGGACATACTCGGTT+GGG - Chr4:57607721-57607740 MsG0480021409.01.T01:intron 50.0%
GAGGGAGAATTATGGGGATG+AGG - Chr4:57607843-57607862 MsG0480021409.01.T01:intron 50.0%
GATAGTAACGACCGCCATAG+AGG + Chr4:57610665-57610684 None:intergenic 50.0%
GATCCACCTAAAGTTGTGCC+TGG - Chr4:57607994-57608013 MsG0480021409.01.T01:intron 50.0%
GCAGCAGCATTGTTAACCTC+CGG + Chr4:57607310-57607329 None:intergenic 50.0%
GGAGTGGTGGTAGTAATGAG+AGG + Chr4:57607106-57607125 None:intergenic 50.0%
GGCTTTGCCATGGTTTCGAT+TGG + Chr4:57609930-57609949 None:intergenic 50.0%
GGTGGATCTTCCTTAGCATC+TGG + Chr4:57607982-57608001 None:intergenic 50.0%
GGTGGGAGGGGAATATATGA+AGG + Chr4:57608712-57608731 None:intergenic 50.0%
GTTTCTCGGATGTAAAGGGG+TGG + Chr4:57609362-57609381 None:intergenic 50.0%
TAGGGGAGAGTGGACATACT+CGG - Chr4:57607716-57607735 MsG0480021409.01.T01:intron 50.0%
TCCCTCCAACGACGGAAAAT+CGG - Chr4:57607123-57607142 MsG0480021409.01.T01:CDS 50.0%
TCTGCCAAGGAAGGAACTTG+GGG + Chr4:57608986-57609005 None:intergenic 50.0%
TGCTGCTGCTGTGTCAATTC+CGG - Chr4:57607324-57607343 MsG0480021409.01.T01:CDS 50.0%
TGCTTCTGCTTCTTCGGAAG+CGG + Chr4:57607244-57607263 None:intergenic 50.0%
TTCCTCTCTGAACCCTGTCA+AGG - Chr4:57607267-57607286 MsG0480021409.01.T01:CDS 50.0%
TTCCTTGACAGGGTTCAGAG+AGG + Chr4:57607272-57607291 None:intergenic 50.0%
TTCTGCCGGTCCCAACATTA+TGG + Chr4:57609152-57609171 None:intergenic 50.0%
TTGTCAGGAAACCTCTGTGC+TGG + Chr4:57607523-57607542 None:intergenic 50.0%
! GAGTTCCGATTTTCCGTCGT+TGG + Chr4:57607131-57607150 None:intergenic 50.0%
! GGATTGATTCCCCGGATAGT+TGG + Chr4:57609886-57609905 None:intergenic 50.0%
! GGTGCTCGTCATTGATTGCT+TGG - Chr4:57610020-57610039 MsG0480021409.01.T01:intron 50.0%
! GTGATTTGCAGGCACCAGTT+GGG - Chr4:57607761-57607780 MsG0480021409.01.T01:intron 50.0%
! TCCGATTTTCCGTCGTTGGA+GGG + Chr4:57607127-57607146 None:intergenic 50.0%
! TGTCTCCACCGTGGTTGATA+TGG - Chr4:57607066-57607085 MsG0480021409.01.T01:CDS 50.0%
! TGTGTGTTTGTTGGAGCGGT+GGG + Chr4:57610291-57610310 None:intergenic 50.0%
! TTCCGATTTTCCGTCGTTGG+AGG + Chr4:57607128-57607147 None:intergenic 50.0%
! TTGTGTGTTTGTTGGAGCGG+TGG + Chr4:57610292-57610311 None:intergenic 50.0%
!! AAGCCCTAGTTGGTGAAGAG+TGG + Chr4:57608793-57608812 None:intergenic 50.0%
!! AGCCCTAGTTGGTGAAGAGT+GGG + Chr4:57608792-57608811 None:intergenic 50.0%
!! GTACAACCGTTGGTAGTGTC+TGG + Chr4:57608405-57608424 None:intergenic 50.0%
!! GTTGGGTTGGACAATGGAGA+AGG - Chr4:57607738-57607757 MsG0480021409.01.T01:intron 50.0%
!! TACTCGGTTGGGTTGGACAA+TGG - Chr4:57607732-57607751 MsG0480021409.01.T01:intron 50.0%
!!! ATTTTTTGTGGGGGTGGGAG+GGG + Chr4:57608724-57608743 None:intergenic 50.0%
!!! TCCCATGCATTTTTGGCTGG+TGG - Chr4:57609689-57609708 MsG0480021409.01.T01:intron 50.0%
ACGGCCAATTCCCAAGCCAA+TGG - Chr4:57610782-57610801 MsG0480021409.01.T01:CDS 55.0%
ACTCAGCAGATGCTCTGCCA+AGG + Chr4:57608999-57609018 None:intergenic 55.0%
AGAGTCGTCGGAGGGTTCAT+CGG + Chr4:57607161-57607180 None:intergenic 55.0%
AGCAGATGCTCTGCCAAGGA+AGG + Chr4:57608995-57609014 None:intergenic 55.0%
AGCCCAAGGACCAACTATCC+GGG - Chr4:57609873-57609892 MsG0480021409.01.T01:intron 55.0%
ATCAACCACGGTGGAGACAG+CGG + Chr4:57607065-57607084 None:intergenic 55.0%
CAGCCCAAGGACCAACTATC+CGG - Chr4:57609872-57609891 MsG0480021409.01.T01:intron 55.0%
CAGGCACCAGTTGGGTATGA+TGG - Chr4:57607769-57607788 MsG0480021409.01.T01:intron 55.0%
CCAGCCGTGAATCCAAACAC+AGG + Chr4:57610178-57610197 None:intergenic 55.0%
CCTATGCGACTCACCGCTTA+AGG - Chr4:57608493-57608512 MsG0480021409.01.T01:intron 55.0%
CCTGTGTTTGGATTCACGGC+TGG - Chr4:57610175-57610194 MsG0480021409.01.T01:CDS 55.0%
CCTTAAGCGGTGAGTCGCAT+AGG + Chr4:57608496-57608515 None:intergenic 55.0%
CGGTGAAGAACAGGACAAGC+TGG + Chr4:57608572-57608591 None:intergenic 55.0%
CTACGGCATCCAGAGAGAAC+GGG - Chr4:57609277-57609296 MsG0480021409.01.T01:intron 55.0%
CTTCTGTTCGGCAGAGTCGT+CGG + Chr4:57607173-57607192 None:intergenic 55.0%
GAAACTCGGTATCCAGCCCA+AGG - Chr4:57609859-57609878 MsG0480021409.01.T01:intron 55.0%
GCAACTGTATGTTGGGGGTG+AGG - Chr4:57609485-57609504 MsG0480021409.01.T01:intron 55.0%
GCTCTGCCAAGGAAGGAACT+TGG + Chr4:57608988-57609007 None:intergenic 55.0%
GGAGAGTGGACATACTCGGT+TGG - Chr4:57607720-57607739 MsG0480021409.01.T01:intron 55.0%
GGATGGGAACCTCAATAGCG+TGG - Chr4:57610042-57610061 MsG0480021409.01.T01:intron 55.0%
GGGGATGAGGGTTATGGTGA+AGG - Chr4:57607856-57607875 MsG0480021409.01.T01:intron 55.0%
GTAGTGAGGTTAGGGGAGAG+TGG - Chr4:57607706-57607725 MsG0480021409.01.T01:intron 55.0%
GTCCATACAGGGCTTTGCCA+TGG + Chr4:57609940-57609959 None:intergenic 55.0%
GTGGACATACTCGGTTGGGT+TGG - Chr4:57607725-57607744 MsG0480021409.01.T01:intron 55.0%
TAGGGCAACAAGAGGGGTAG+TGG - Chr4:57607657-57607676 MsG0480021409.01.T01:intron 55.0%
TCAATCCCGCCATCCACTAG+CGG - Chr4:57609899-57609918 MsG0480021409.01.T01:intron 55.0%
TCCCCGGATAGTTGGTCCTT+GGG + Chr4:57609878-57609897 None:intergenic 55.0%
TCTCTCTCTCCCGTTCTCTC+TGG + Chr4:57609289-57609308 None:intergenic 55.0%
TGGCAAAGCCCTGTATGGAC+TGG - Chr4:57609940-57609959 MsG0480021409.01.T01:intron 55.0%
TGTCTTCTCCACCGTTCGTG+TGG + Chr4:57607486-57607505 None:intergenic 55.0%
TTCCCCGGATAGTTGGTCCT+TGG + Chr4:57609879-57609898 None:intergenic 55.0%
! GGGTGCGGTTGTTGTTGTGA+CGG + Chr4:57607005-57607024 None:intergenic 55.0%
! GGTGATTTGCAGGCACCAGT+TGG - Chr4:57607760-57607779 MsG0480021409.01.T01:intron 55.0%
! TGTTTGTTGGAGCGGTGGGT+TGG + Chr4:57610287-57610306 None:intergenic 55.0%
! TTTTCCGTCGTTGGAGGGAG+TGG + Chr4:57607122-57607141 None:intergenic 55.0%
!! AAAGCCCTGTATGGACTGGC+TGG - Chr4:57609944-57609963 MsG0480021409.01.T01:intron 55.0%
!! GCAACAAGAGGGGTAGTGGA+AGG - Chr4:57607661-57607680 MsG0480021409.01.T01:intron 55.0%
!!! GCCTCCCATGCATTTTTGGC+TGG - Chr4:57609686-57609705 MsG0480021409.01.T01:intron 55.0%
AATCCCGCCATCCACTAGCG+GGG - Chr4:57609901-57609920 MsG0480021409.01.T01:intron 60.0%
ACCACCACTCCCTCCAACGA+CGG - Chr4:57607115-57607134 MsG0480021409.01.T01:CDS 60.0%
ATGGGCCAGCCAGTCCATAC+AGG + Chr4:57609952-57609971 None:intergenic 60.0%
CAATCCCGCCATCCACTAGC+GGG - Chr4:57609900-57609919 MsG0480021409.01.T01:intron 60.0%
CGGATAGTTGGTCCTTGGGC+TGG + Chr4:57609874-57609893 None:intergenic 60.0%
GCCCAAGGACCAACTATCCG+GGG - Chr4:57609874-57609893 MsG0480021409.01.T01:intron 60.0%
GCTACAACCACACCGGCGAA+TGG - Chr4:57607346-57607365 MsG0480021409.01.T01:CDS 60.0%
GCTGCCCCAAGTTCCTTCCT+TGG - Chr4:57608979-57608998 MsG0480021409.01.T01:intron 60.0%
GGTGGAGGAAGCAGGTGGTT+CGG + Chr4:57607032-57607051 None:intergenic 60.0%
GTCGTCGCTGTTCCATTCGC+CGG + Chr4:57607361-57607380 None:intergenic 60.0%
TCAACCACGGTGGAGACAGC+GGG + Chr4:57607064-57607083 None:intergenic 60.0%
TCGTCGGAGGGTTCATCGGA+GGG + Chr4:57607157-57607176 None:intergenic 60.0%
TGGGCCAGCCAGTCCATACA+GGG + Chr4:57609951-57609970 None:intergenic 60.0%
TGTTCGGCAGAGTCGTCGGA+GGG + Chr4:57607169-57607188 None:intergenic 60.0%
TTCGCCGGTGTGGTTGTAGC+CGG + Chr4:57607346-57607365 None:intergenic 60.0%
! GAGGGCGCAATTGGCAGATG+AGG - Chr4:57609504-57609523 MsG0480021409.01.T01:intron 60.0%
!! GAGGGGTAGTGGAAGGAGCT+TGG - Chr4:57607668-57607687 MsG0480021409.01.T01:intron 60.0%
!! GGATGGCGGGATTGATTCCC+CGG + Chr4:57609894-57609913 None:intergenic 60.0%
ATCCCGCCATCCACTAGCGG+GGG - Chr4:57609902-57609921 MsG0480021409.01.T01:intron 65.0%
CGCTGTTCCATTCGCCGGTG+TGG + Chr4:57607356-57607375 None:intergenic 65.0%
CTGTTCGGCAGAGTCGTCGG+AGG + Chr4:57607170-57607189 None:intergenic 65.0%
GGAGACAGCGGGTGGTTCGA+CGG + Chr4:57607053-57607072 None:intergenic 65.0%
GGGGGGGCCAATCGAAACCA+TGG - Chr4:57609920-57609939 MsG0480021409.01.T01:intron 65.0%
GGGTGGGGAGGGTGACGATT+TGG - Chr4:57608226-57608245 MsG0480021409.01.T01:intron 65.0%
GGTTCGACGGTGGAGGAAGC+AGG + Chr4:57607040-57607059 None:intergenic 65.0%
GTCGTCGGAGGGTTCATCGG+AGG + Chr4:57607158-57607177 None:intergenic 65.0%
TCCGTCGTTGGAGGGAGTGG+TGG + Chr4:57607119-57607138 None:intergenic 65.0%
TCGACGGTGGAGGAAGCAGG+TGG + Chr4:57607037-57607056 None:intergenic 65.0%
! GAAGCAGGTGGTTCGGCGGA+GGG + Chr4:57607025-57607044 None:intergenic 65.0%
! GGAGGAAGCAGGTGGTTCGG+CGG + Chr4:57607029-57607048 None:intergenic 65.0%
! GTTGGGGGTGAGGGCGCAAT+TGG - Chr4:57609495-57609514 MsG0480021409.01.T01:intron 65.0%
ACCACCCGCTGTCTCCACCG+TGG - Chr4:57607057-57607076 MsG0480021409.01.T01:CDS 70.0%
ACCACGGTGGAGACAGCGGG+TGG + Chr4:57607061-57607080 None:intergenic 70.0%
AGCGGGTGGTTCGACGGTGG+AGG + Chr4:57607047-57607066 None:intergenic 70.0%
GACAGCGGGTGGTTCGACGG+TGG + Chr4:57607050-57607069 None:intergenic 70.0%
TCCCGCCATCCACTAGCGGG+GGG - Chr4:57609903-57609922 MsG0480021409.01.T01:intron 70.0%
TTGGCCCCCCCGCTAGTGGA+TGG + Chr4:57609911-57609930 None:intergenic 70.0%
! AGGTGGTTCGGCGGAGGGTG+CGG + Chr4:57607020-57607039 None:intergenic 70.0%
! GGAAGCAGGTGGTTCGGCGG+AGG + Chr4:57607026-57607045 None:intergenic 70.0%
! TCGATTGGCCCCCCCGCTAG+TGG + Chr4:57609915-57609934 None:intergenic 70.0%
CCCGCCATCCACTAGCGGGG+GGG - Chr4:57609904-57609923 MsG0480021409.01.T01:intron 75.0%
! CCCCCCCGCTAGTGGATGGC+GGG + Chr4:57609907-57609926 None:intergenic 75.0%
! GCCCCCCCGCTAGTGGATGG+CGG + Chr4:57609908-57609927 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
Chr4 gene 57606938 57611142 57606938 ID=MsG0480021409.01;Name=MsG0480021409.01
Chr4 mRNA 57606938 57611142 57606938 ID=MsG0480021409.01.T01;Parent=MsG0480021409.01;Name=MsG0480021409.01.T01;_AED=0.36;_eAED=0.36;_QI=0|0|0|1|1|1|2|0|537
Chr4 exon 57610065 57611142 57610065 ID=MsG0480021409.01.T01:exon:19322;Parent=MsG0480021409.01.T01
Chr4 exon 57606938 57607473 57606938 ID=MsG0480021409.01.T01:exon:19321;Parent=MsG0480021409.01.T01
Chr4 CDS 57610065 57611142 57610065 ID=MsG0480021409.01.T01:cds;Parent=MsG0480021409.01.T01
Chr4 CDS 57606938 57607473 57606938 ID=MsG0480021409.01.T01:cds;Parent=MsG0480021409.01.T01
Gene Sequence

>MsG0480021409.01.T01

ATGGATACACTTCAAGCCACATACAAAGACGAAGAGGAAGATGAAGAAATGGTACAACCTTCAACCGTCACAACAACAACCGCACCCTCCGCCGAACCACCTGCTTCCTCCACCGTCGAACCACCCGCTGTCTCCACCGTGGTTGATATGGAATTAACAGACGCGCCTCTCATTACTACCACCACTCCCTCCAACGACGGAAAATCGGAACTCGATCCCTCCGATGAACCCTCCGACGACTCTGCCGAACAGAAGAATTCACCGAAACAGAAAAGAGAACAACCTGATGAAGATGAAGAAGAACCGCTTCCGAAGAAGCAGAAGCAACTTTCCTCTCTGAACCCTGTCAAGGAAGAACCAATTTCGTTGCCGGAGGTTAACAATGCTGCTGCTGCTGTGTCAATTCCGGCTACAACCACACCGGCGAATGGAACAGCGACGACGAAGAAAACGAAGAAAAAGAATAACAATGTATGGGCAACAAAATCGAAGAAAAAGACGAAGAAAAACAAAAACAACAACAACGGCAACACCAACAATAACAACCACACGAACGGTGGAGAAGACAGTGTTCTGATAACACCAGCACAGAGGTTTCCTGACAAAAGTGACGATACACCGGAGATGAAGATATGTTTATCGAAAGTTTACAAAGCGGAGAAAGTTGAGTTGAGTGAGGATAGGTTAAGTGCAGGGAGCACAAAAGGGTATAGAATGGTTAGGGCAACAAGAGGGGTAGTGGAAGGAGCTTGGTATTTTGAGATAAAGGTAGTGAGGTTAGGGGAGAGTGGACATACTCGGTTGGGTTGGACAATGGAGAAGGGTGATTTGCAGGCACCAGTTGGGTATGATGGGAATAGTTTTGGGTATAGGGATATTGATGGGAGTAAGATTCATAAGGCTTTGAGGGAGAATTATGGGGATGAGGGTTATGGTGAAGGTGATGTTATTGGGTTTTATATTAATTTGCCTGATGGAGATAAGTTTGCTCCGAAAAATCAGAATTTGGTTTGGTATAAAGGACAACGGTATGCTTATAATCCAGATGCTAAGGAAGATCCACCTAAAGTTGTGCCTGGAAGTGAGATATCTTTCTTCAAAAATGGTGTATGTCAAGGTGTAGCTTTCAAAGACCTCTATGGCGGTCGTTACTATCCTGCTGCTTCAATGTATACTCTTCCCCATGAACAAAACTGCACAGTTAAGTTCAACTTTGGTCCGGACTTCGAATTTTTTCCTCATGATTTCAATGAACGGCCAATTCCCAAGCCAATGGTTGAAGTTCCTCATCATGGTTTTGAAAATCAAGTTGAAAATGGGGCGTTGACTGAGAAGAAATCTAATGGAGAGTTGAATGAGAGTAAATCAAATGGAGAGTCGACTGTGAGGAAATCAACAGGAGAGTCGTCTGAAAGGAAATCAAATGGAGAGTCGACTGAGAAGAAATCAAATGGAGAGTCGACTGAGAAGAAATCAAATGGAGAGTCATACGAGCAAAAATCACATGGAGAGTCGAAGGAGAAGAAATCAGATGAAGAGGCGAAGGAGAAGAAATCAGATGAAGAGGCGAAGGAGAAGAAATCAGATGAAGAGGTGGAAGAGAAGAAATCTTAA

Protein sequence

>MsG0480021409.01.T01

MDTLQATYKDEEEDEEMVQPSTVTTTTAPSAEPPASSTVEPPAVSTVVDMELTDAPLITTTTPSNDGKSELDPSDEPSDDSAEQKNSPKQKREQPDEDEEEPLPKKQKQLSSLNPVKEEPISLPEVNNAAAAVSIPATTTPANGTATTKKTKKKNNNVWATKSKKKTKKNKNNNNGNTNNNNHTNGGEDSVLITPAQRFPDKSDDTPEMKICLSKVYKAEKVELSEDRLSAGSTKGYRMVRATRGVVEGAWYFEIKVVRLGESGHTRLGWTMEKGDLQAPVGYDGNSFGYRDIDGSKIHKALRENYGDEGYGEGDVIGFYINLPDGDKFAPKNQNLVWYKGQRYAYNPDAKEDPPKVVPGSEISFFKNGVCQGVAFKDLYGGRYYPAASMYTLPHEQNCTVKFNFGPDFEFFPHDFNERPIPKPMVEVPHHGFENQVENGALTEKKSNGELNESKSNGESTVRKSTGESSERKSNGESTEKKSNGESTEKKSNGESYEQKSHGESKEKKSDEEAKEKKSDEEAKEKKSDEEVEEKKS*