Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024894.01.T02 | XP_003611879.1 | 100 | 265 | 0 | 0 | 1 | 265 | 1 | 265 | 0 | 545 |
| MsG0580024894.01.T01 | XP_003611879.1 | 100 | 265 | 0 | 0 | 1 | 265 | 1 | 265 | 0 | 545 |
| MsG0580024894.01.T03 | XP_003611879.1 | 100 | 247 | 0 | 0 | 1 | 247 | 19 | 265 | 1.25E-180 | 506 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024894.01.T01 | P49204 | 90.458 | 262 | 25 | 0 | 1 | 262 | 1 | 262 | 0 | 506 |
| MsG0580024894.01.T02 | P49204 | 90.458 | 262 | 25 | 0 | 1 | 262 | 1 | 262 | 0 | 506 |
| MsG0580024894.01.T03 | P49204 | 89.754 | 244 | 25 | 0 | 1 | 244 | 19 | 262 | 1.92E-168 | 468 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024894.01.T01 | B7FL29 | 100.000 | 265 | 0 | 0 | 1 | 265 | 1 | 265 | 0.0 | 545 |
| MsG0580024894.01.T02 | B7FL29 | 100.000 | 265 | 0 | 0 | 1 | 265 | 1 | 265 | 0.0 | 545 |
| MsG0580024894.01.T03 | B7FL29 | 100.000 | 247 | 0 | 0 | 1 | 247 | 19 | 265 | 0.0 | 506 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048040.01 | MsG0580024894.01 | 0.907835 | 3.295126e-81 | 5.949373e-77 |
| MsG0080048922.01 | MsG0580024894.01 | 0.801129 | 1.041447e-48 | 4.935166e-46 |
| MsG0180000096.01 | MsG0580024894.01 | 0.831437 | 1.670389e-55 | 1.812564e-52 |
| MsG0180000118.01 | MsG0580024894.01 | 0.856354 | 3.405286e-62 | 8.105455e-59 |
| MsG0180001169.01 | MsG0580024894.01 | 0.837422 | 5.247948e-57 | 6.813397e-54 |
| MsG0180001829.01 | MsG0580024894.01 | 0.810197 | 1.299045e-50 | 7.780718e-48 |
| MsG0180002738.01 | MsG0580024894.01 | 0.825386 | 4.821276e-54 | 4.387856e-51 |
| MsG0180003585.01 | MsG0580024894.01 | 0.853764 | 1.925327e-61 | 4.205147e-58 |
| MsG0180003623.01 | MsG0580024894.01 | 0.803375 | 3.592623e-49 | 1.802374e-46 |
| MsG0180003897.01 | MsG0580024894.01 | 0.851320 | 9.584372e-61 | 1.932760e-57 |
| MsG0180004503.01 | MsG0580024894.01 | 0.874431 | 6.791225e-68 | 3.056573e-64 |
| MsG0180004829.01 | MsG0580024894.01 | 0.859662 | 3.540740e-63 | 9.423614e-60 |
| MsG0180005384.01 | MsG0580024894.01 | 0.912155 | 2.690607e-83 | 5.967273e-79 |
| MsG0180005573.01 | MsG0580024894.01 | 0.860467 | 2.023777e-63 | 5.537723e-60 |
| MsG0180005789.01 | MsG0580024894.01 | 0.804462 | 2.135675e-49 | 1.101808e-46 |
| MsG0280006301.01 | MsG0580024894.01 | 0.920532 | 1.135883e-87 | 3.871283e-83 |
| MsG0380014507.01 | MsG0580024894.01 | 0.833692 | 4.607255e-56 | 5.345968e-53 |
| MsG0480019165.01 | MsG0580024894.01 | 0.825476 | 4.591882e-54 | 4.189707e-51 |
| MsG0480020796.01 | MsG0580024894.01 | 0.939585 | 9.923233e-100 | 1.030724e-94 |
| MsG0480020911.01 | MsG0580024894.01 | 0.905897 | 2.639492e-80 | 4.364394e-76 |
| MsG0480021279.01 | MsG0580024894.01 | 0.862511 | 4.811082e-64 | 1.412661e-60 |
| MsG0480021293.01 | MsG0580024894.01 | 0.846490 | 2.102386e-59 | 3.624867e-56 |
| MsG0480021417.01 | MsG0580024894.01 | 0.887009 | 2.078133e-72 | 1.519028e-68 |
| MsG0480021985.01 | MsG0580024894.01 | 0.828657 | 7.958301e-55 | 7.960813e-52 |
| MsG0480022006.01 | MsG0580024894.01 | 0.890242 | 1.175863e-73 | 9.807670e-70 |
| MsG0480022041.01 | MsG0580024894.01 | 0.816147 | 6.424005e-52 | 4.515911e-49 |
| MsG0480022363.01 | MsG0580024894.01 | 0.856950 | 2.274990e-62 | 5.522568e-59 |
| MsG0480022955.01 | MsG0580024894.01 | 0.918983 | 7.936728e-87 | 2.488404e-82 |
| MsG0480023380.01 | MsG0580024894.01 | 0.920990 | 6.341254e-88 | 2.212564e-83 |
| MsG0480023774.01 | MsG0580024894.01 | 0.880949 | 3.601507e-70 | 2.070304e-66 |
| MsG0480023931.01 | MsG0580024894.01 | 0.829899 | 3.975311e-55 | 4.124022e-52 |
| MsG0480023996.01 | MsG0580024894.01 | 0.910138 | 2.619340e-82 | 5.273958e-78 |
| MsG0580024481.01 | MsG0580024894.01 | 0.835810 | 1.351245e-56 | 1.670781e-53 |
| MsG0580024540.01 | MsG0580024894.01 | 0.858271 | 9.239276e-63 | 2.344723e-59 |
| MsG0580024738.01 | MsG0580024894.01 | 0.886913 | 2.259541e-72 | 1.645402e-68 |
| MsG0580024894.01 | MsG0580025750.01 | 0.831891 | 1.290709e-55 | 1.419803e-52 |
| MsG0580024894.01 | MsG0580026749.01 | 0.886593 | 2.988983e-72 | 2.148507e-68 |
| MsG0580024894.01 | MsG0680031368.01 | 0.930516 | 1.462303e-93 | 8.718002e-89 |
| MsG0580024894.01 | MsG0680032459.01 | 0.904102 | 1.741487e-79 | 2.652784e-75 |
| MsG0580024894.01 | MsG0680035611.01 | 0.833990 | 3.882467e-56 | 4.546117e-53 |
| MsG0580024894.01 | MsG0780036015.01 | 0.804371 | 2.230664e-49 | 1.148167e-46 |
| MsG0580024894.01 | MsG0780036859.01 | 0.800243 | 1.579484e-48 | 7.318030e-46 |
| MsG0580024894.01 | MsG0780037290.01 | 0.821102 | 4.826986e-53 | 3.890613e-50 |
| MsG0580024894.01 | MsG0780038383.01 | 0.824502 | 7.795460e-54 | 6.917494e-51 |
| MsG0580024894.01 | MsG0780038861.01 | 0.807654 | 4.547165e-50 | 2.546917e-47 |
| MsG0580024894.01 | MsG0780040174.01 | 0.840206 | 9.995388e-58 | 1.413684e-54 |
| MsG0580024894.01 | MsG0780041240.01 | 0.841216 | 5.434273e-58 | 7.929446e-55 |
| MsG0580024894.01 | MsG0780041311.01 | 0.860941 | 1.453803e-63 | 4.042933e-60 |
| MsG0580024894.01 | MsG0780041461.01 | 0.801220 | 9.978993e-49 | 4.739431e-46 |
| MsG0580024894.01 | MsG0780041522.01 | 0.864705 | 1.002982e-64 | 3.178957e-61 |
| MsG0580024894.01 | MsG0780041790.01 | 0.853303 | 2.611630e-61 | 5.617116e-58 |
| MsG0580024894.01 | MsG0880041941.01 | 0.859131 | 5.113281e-63 | 1.336030e-59 |
| MsG0580024894.01 | MsG0880042517.01 | 0.863501 | 2.379371e-64 | 7.228874e-61 |
| MsG0580024894.01 | MsG0880042896.01 | 0.819428 | 1.167584e-52 | 8.982399e-50 |
| MsG0580024894.01 | MsG0880043076.01 | 0.907738 | 3.660642e-81 | 6.579956e-77 |
| MsG0580024894.01 | MsG0880044204.01 | 0.906622 | 1.219214e-80 | 2.082864e-76 |
| MsG0580024894.01 | MsG0880045836.01 | 0.880449 | 5.440415e-70 | 3.067346e-66 |
| MsG0580024894.01 | MsG0880046220.01 | 0.850332 | 1.817928e-60 | 3.548608e-57 |
| MsG0580024894.01 | MsG0880046236.01 | 0.807110 | 5.930761e-50 | 3.275162e-47 |
| MsG0580024894.01 | MsG0880047310.01 | 0.849405 | 3.301797e-60 | 6.252496e-57 |
| MsG0380015446.01 | MsG0580024894.01 | 0.810540 | 1.095704e-50 | 6.622436e-48 |
| MsG0380015766.01 | MsG0580024894.01 | 0.818312 | 2.093282e-52 | 1.561442e-49 |
| MsG0380015857.01 | MsG0580024894.01 | 0.903317 | 3.932372e-79 | 5.791830e-75 |
| MsG0380016678.01 | MsG0580024894.01 | 0.895683 | 7.592010e-76 | 7.957658e-72 |
| MsG0380016732.01 | MsG0580024894.01 | 0.814836 | 1.257762e-51 | 8.530369e-49 |
| MsG0380016744.01 | MsG0580024894.01 | 0.865892 | 4.246858e-65 | 1.404110e-61 |
| MsG0380016760.01 | MsG0580024894.01 | 0.868981 | 4.356973e-66 | 1.607680e-62 |
| MsG0380016805.01 | MsG0580024894.01 | 0.805193 | 1.501987e-49 | 7.896453e-47 |
| MsG0380017516.01 | MsG0580024894.01 | 0.866756 | 2.259527e-65 | 7.702435e-62 |
| MsG0380018056.01 | MsG0580024894.01 | 0.897811 | 9.782429e-77 | 1.123999e-72 |
| MsG0480018164.01 | MsG0580024894.01 | 0.896557 | 3.290510e-76 | 3.578480e-72 |
| MsG0280006629.01 | MsG0580024894.01 | 0.853031 | 3.124935e-61 | 6.659864e-58 |
| MsG0280006747.01 | MsG0580024894.01 | 0.859186 | 4.921403e-63 | 1.288490e-59 |
| MsG0280006760.01 | MsG0580024894.01 | 0.856728 | 2.643949e-62 | 6.370158e-59 |
| MsG0280007055.01 | MsG0580024894.01 | 0.912624 | 1.573242e-83 | 3.571658e-79 |
| MsG0280010232.01 | MsG0580024894.01 | 0.842137 | 3.106667e-58 | 4.665893e-55 |
| MsG0280010519.01 | MsG0580024894.01 | 0.879825 | 9.079993e-70 | 4.997068e-66 |
PPI
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024894.01.T02 | MTR_5g018940 | 100.000 | 265 | 0 | 0 | 1 | 265 | 1 | 265 | 0.0 | 545 |
| MsG0580024894.01.T02 | MTR_5g018940 | 100.000 | 265 | 0 | 0 | 1 | 265 | 1 | 265 | 0.0 | 545 |
| MsG0580024894.01.T02 | MTR_8g052030 | 100.000 | 265 | 0 | 0 | 1 | 265 | 1 | 265 | 0.0 | 545 |
| MsG0580024894.01.T02 | MTR_4g014590 | 95.094 | 265 | 12 | 1 | 1 | 265 | 1 | 264 | 0.0 | 518 |
| MsG0580024894.01.T02 | MTR_7g069950 | 94.510 | 255 | 14 | 0 | 1 | 255 | 1 | 255 | 0.0 | 501 |
| MsG0580024894.01.T01 | MTR_5g018940 | 100.000 | 265 | 0 | 0 | 1 | 265 | 1 | 265 | 0.0 | 545 |
| MsG0580024894.01.T01 | MTR_5g018940 | 100.000 | 265 | 0 | 0 | 1 | 265 | 1 | 265 | 0.0 | 545 |
| MsG0580024894.01.T01 | MTR_8g052030 | 100.000 | 265 | 0 | 0 | 1 | 265 | 1 | 265 | 0.0 | 545 |
| MsG0580024894.01.T01 | MTR_4g014590 | 95.094 | 265 | 12 | 1 | 1 | 265 | 1 | 264 | 0.0 | 518 |
| MsG0580024894.01.T01 | MTR_7g069950 | 94.510 | 255 | 14 | 0 | 1 | 255 | 1 | 255 | 0.0 | 501 |
| MsG0580024894.01.T03 | MTR_5g018940 | 100.000 | 247 | 0 | 0 | 1 | 247 | 19 | 265 | 0.0 | 506 |
| MsG0580024894.01.T03 | MTR_5g018940 | 100.000 | 247 | 0 | 0 | 1 | 247 | 19 | 265 | 0.0 | 506 |
| MsG0580024894.01.T03 | MTR_8g052030 | 100.000 | 247 | 0 | 0 | 1 | 247 | 19 | 265 | 0.0 | 506 |
| MsG0580024894.01.T03 | MTR_4g014590 | 94.737 | 247 | 12 | 1 | 1 | 247 | 19 | 264 | 5.21e-174 | 479 |
| MsG0580024894.01.T03 | MTR_7g069950 | 94.093 | 237 | 14 | 0 | 1 | 237 | 19 | 255 | 1.44e-167 | 463 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024894.01.T02 | AT5G07090 | 90.458 | 262 | 25 | 0 | 1 | 262 | 1 | 262 | 0.0 | 506 |
| MsG0580024894.01.T02 | AT2G17360 | 90.769 | 260 | 24 | 0 | 1 | 260 | 1 | 260 | 0.0 | 504 |
| MsG0580024894.01.T02 | AT5G58420 | 90.076 | 262 | 26 | 0 | 1 | 262 | 1 | 262 | 0.0 | 503 |
| MsG0580024894.01.T02 | AT5G07090 | 89.754 | 244 | 25 | 0 | 19 | 262 | 1 | 244 | 2.51e-169 | 468 |
| MsG0580024894.01.T02 | AT5G07090 | 89.754 | 244 | 25 | 0 | 19 | 262 | 1 | 244 | 2.51e-169 | 468 |
| MsG0580024894.01.T02 | AT2G17360 | 91.160 | 181 | 16 | 0 | 1 | 181 | 1 | 181 | 2.71e-125 | 354 |
| MsG0580024894.01.T01 | AT5G07090 | 90.458 | 262 | 25 | 0 | 1 | 262 | 1 | 262 | 0.0 | 506 |
| MsG0580024894.01.T01 | AT2G17360 | 90.769 | 260 | 24 | 0 | 1 | 260 | 1 | 260 | 0.0 | 504 |
| MsG0580024894.01.T01 | AT5G58420 | 90.076 | 262 | 26 | 0 | 1 | 262 | 1 | 262 | 0.0 | 503 |
| MsG0580024894.01.T01 | AT5G07090 | 89.754 | 244 | 25 | 0 | 19 | 262 | 1 | 244 | 2.51e-169 | 468 |
| MsG0580024894.01.T01 | AT5G07090 | 89.754 | 244 | 25 | 0 | 19 | 262 | 1 | 244 | 2.51e-169 | 468 |
| MsG0580024894.01.T01 | AT2G17360 | 91.160 | 181 | 16 | 0 | 1 | 181 | 1 | 181 | 2.71e-125 | 354 |
| MsG0580024894.01.T03 | AT5G07090 | 89.754 | 244 | 25 | 0 | 1 | 244 | 1 | 244 | 6.87e-170 | 468 |
| MsG0580024894.01.T03 | AT5G07090 | 89.754 | 244 | 25 | 0 | 1 | 244 | 1 | 244 | 6.87e-170 | 468 |
| MsG0580024894.01.T03 | AT5G07090 | 89.754 | 244 | 25 | 0 | 1 | 244 | 19 | 262 | 1.96e-169 | 468 |
| MsG0580024894.01.T03 | AT2G17360 | 90.083 | 242 | 24 | 0 | 1 | 242 | 19 | 260 | 8.31e-169 | 466 |
| MsG0580024894.01.T03 | AT5G58420 | 89.344 | 244 | 26 | 0 | 1 | 244 | 19 | 262 | 1.49e-168 | 466 |
| MsG0580024894.01.T03 | AT2G17360 | 90.184 | 163 | 16 | 0 | 1 | 163 | 19 | 181 | 1.21e-110 | 316 |
Find 72 sgRNAs with CRISPR-Local
Find 216 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAACGTCTTCTATCAATTT+TGG | 0.211537 | 5:-11350743 | MsG0580024894.01.T01:three_prime_UTR |
| GCATTGGATGCTTGACAAAT+TGG | 0.267158 | 5:-11352566 | MsG0580024894.01.T01:CDS |
| TTATCATTCAAGCTTAATAT+TGG | 0.302230 | 5:-11350654 | MsG0580024894.01.T01:three_prime_UTR |
| TTAGCCCTGATGACGGGGTC+TGG | 0.336130 | 5:+11351162 | None:intergenic |
| AGGTTCGTTCAGTGCAATTT+GGG | 0.356395 | 5:-11351236 | MsG0580024894.01.T01:CDS |
| AAGGTTCGTTCAGTGCAATT+TGG | 0.362570 | 5:-11351237 | MsG0580024894.01.T01:CDS |
| TGGATGTTTGTGAATGTAAC+AGG | 0.367650 | 5:-11352632 | MsG0580024894.01.T01:intron |
| TGCGACCATCATAGGTGTTC+AGG | 0.372486 | 5:+11351196 | None:intergenic |
| TTCAAGCTTAATATTGGTAA+TGG | 0.377039 | 5:-11350648 | MsG0580024894.01.T01:three_prime_UTR |
| GTTACCCAGACCCCGTCATC+AGG | 0.378657 | 5:-11351167 | MsG0580024894.01.T01:CDS |
| GGTGACTGGTGGTAAGAATA+GGG | 0.379702 | 5:-11351064 | MsG0580024894.01.T01:CDS |
| TTGTCAAGCATCCAATGCTT+GGG | 0.386706 | 5:+11352571 | None:intergenic |
| ATTTCATCAAATTTGATGTT+GGG | 0.389801 | 5:-11351098 | MsG0580024894.01.T01:CDS |
| TGGTGACTGGTGGTAAGAAT+AGG | 0.412505 | 5:-11351065 | MsG0580024894.01.T01:CDS |
| CTGGTCAATGTGTTCACTAT+TGG | 0.427005 | 5:-11350946 | MsG0580024894.01.T01:CDS |
| CTTTGAGACAATCCACGTTC+AGG | 0.430746 | 5:-11350998 | MsG0580024894.01.T01:CDS |
| TAATTTAATACCCTTGCCCT+TGG | 0.435192 | 5:+11350894 | None:intergenic |
| TTTGTCAAGCATCCAATGCT+TGG | 0.437860 | 5:+11352570 | None:intergenic |
| ACGGATAGTGCGACCATCAT+AGG | 0.439814 | 5:+11351188 | None:intergenic |
| GTGTCATTAGCCCTGATGAC+GGG | 0.456779 | 5:+11351156 | None:intergenic |
| TCATGAGTTTGCAACTCGTC+TGG | 0.461260 | 5:-11350965 | MsG0580024894.01.T01:CDS |
| CATTGGATGCTTGACAAATT+GGG | 0.462746 | 5:-11352565 | MsG0580024894.01.T01:CDS |
| TGATGTTGGGAATGTAGTTA+TGG | 0.467410 | 5:-11351085 | MsG0580024894.01.T01:CDS |
| CAAGAACAGAGAAAAGCATA+AGG | 0.471422 | 5:-11351025 | MsG0580024894.01.T01:CDS |
| CCATCATAGGTGTTCAGGTA+TGG | 0.471971 | 5:+11351201 | None:intergenic |
| GCTCTGGTTATGTGATCAAC+TGG | 0.476135 | 5:+11350577 | None:intergenic |
| TAGCCCTGATGACGGGGTCT+GGG | 0.476922 | 5:+11351163 | None:intergenic |
| GATTTCATCAAATTTGATGT+TGG | 0.482045 | 5:-11351099 | MsG0580024894.01.T01:CDS |
| TATGTGATCAACTGGTATTA+TGG | 0.495590 | 5:+11350585 | None:intergenic |
| TCATTGAGGAAGCGAGGAAG+AGG | 0.514249 | 5:-11350867 | MsG0580024894.01.T01:CDS |
| CCATACCTGAACACCTATGA+TGG | 0.523294 | 5:-11351201 | MsG0580024894.01.T01:CDS |
| CTGAACGTGGATTGTCTCAA+AGG | 0.529462 | 5:+11350999 | None:intergenic |
| GGCTAATGACACTATCAAGC+TGG | 0.530045 | 5:-11351145 | MsG0580024894.01.T01:CDS |
| GCCATGGGTTTCTCTTCCCA+AGG | 0.532349 | 5:-11350911 | MsG0580024894.01.T01:CDS |
| GGTTTCTCTTCCCAAGGGCA+AGG | 0.533054 | 5:-11350905 | MsG0580024894.01.T01:CDS |
| TGACACTATCAAGCTGGACC+TGG | 0.533062 | 5:-11351139 | MsG0580024894.01.T01:CDS |
| TGATGACGGGGTCTGGGTAA+CGG | 0.533614 | 5:+11351169 | None:intergenic |
| AATTTAATACCCTTGCCCTT+GGG | 0.533880 | 5:+11350895 | None:intergenic |
| TTGGCAAGGGGACAAAGCCA+TGG | 0.543228 | 5:-11350927 | MsG0580024894.01.T01:CDS |
| TCAGTGCAATTTGGGCAGAA+AGG | 0.544106 | 5:-11351228 | MsG0580024894.01.T01:CDS |
| GGGAATGTAGTTATGGTGAC+TGG | 0.550052 | 5:-11351078 | MsG0580024894.01.T01:CDS |
| TATTAAATTAACTGTCATTG+AGG | 0.555206 | 5:-11350881 | MsG0580024894.01.T01:CDS |
| CAATGTGTTCACTATTGGCA+AGG | 0.556225 | 5:-11350941 | MsG0580024894.01.T01:CDS |
| TGTCAAGCATCCAATGCTTG+GGG | 0.568821 | 5:+11352572 | None:intergenic |
| GTTTCTCTTCCCAAGGGCAA+GGG | 0.571738 | 5:-11350904 | MsG0580024894.01.T01:CDS |
| TTTGTGAATGTAACAGGCGA+GGG | 0.581113 | 5:-11352626 | MsG0580024894.01.T01:intron |
| TGGCAAGGGGACAAAGCCAT+GGG | 0.585049 | 5:-11350926 | MsG0580024894.01.T01:CDS |
| AAGAACAGAGAAAAGCATAA+GGG | 0.598361 | 5:-11351024 | MsG0580024894.01.T01:CDS |
| AATGTGTTCACTATTGGCAA+GGG | 0.602196 | 5:-11350940 | MsG0580024894.01.T01:CDS |
| GATCAACTGGTATTATGGTA+AGG | 0.613517 | 5:+11350590 | None:intergenic |
| ATCCACGTTCAGGATGCCAC+TGG | 0.616221 | 5:-11350988 | MsG0580024894.01.T01:CDS |
| GACCAGTGGCATCCTGAACG+TGG | 0.616751 | 5:+11350986 | None:intergenic |
| CCATGGGTTTCTCTTCCCAA+GGG | 0.618310 | 5:-11350910 | MsG0580024894.01.T01:CDS |
| GTTTGAAGAAGCATTTGAAG+AGG | 0.620222 | 5:-11352603 | MsG0580024894.01.T01:CDS |
| CAACTGGTATTATGGTAAGG+TGG | 0.623332 | 5:+11350593 | None:intergenic |
| GTTTGTGAATGTAACAGGCG+AGG | 0.624164 | 5:-11352627 | MsG0580024894.01.T01:intron |
| TAACTGTCATTGAGGAAGCG+AGG | 0.626309 | 5:-11350873 | MsG0580024894.01.T01:CDS |
| CATTGAGGAAGCGAGGAAGA+GGG | 0.627076 | 5:-11350866 | MsG0580024894.01.T01:CDS |
| AGTGTCATTAGCCCTGATGA+CGG | 0.628940 | 5:+11351155 | None:intergenic |
| ATGGCAGTTCAAGCTGTGCA+AGG | 0.628961 | 5:-11351256 | MsG0580024894.01.T01:intron |
| CACTATCAAGCTGGACCTGG+AGG | 0.630561 | 5:-11351136 | MsG0580024894.01.T01:CDS |
| GTGACTGGTGGTAAGAATAG+GGG | 0.630861 | 5:-11351063 | MsG0580024894.01.T01:CDS |
| TGTCATTAGCCCTGATGACG+GGG | 0.640624 | 5:+11351157 | None:intergenic |
| GTCAAGCATCCAATGCTTGG+GGG | 0.650283 | 5:+11352573 | None:intergenic |
| TTACCCAGACCCCGTCATCA+GGG | 0.650709 | 5:-11351166 | MsG0580024894.01.T01:CDS |
| CCCTTGGGAAGAGAAACCCA+TGG | 0.658024 | 5:+11350910 | None:intergenic |
| TGACTGGTGGTAAGAATAGG+GGG | 0.662881 | 5:-11351062 | MsG0580024894.01.T01:CDS |
| ATGTGTTCACTATTGGCAAG+GGG | 0.666865 | 5:-11350939 | MsG0580024894.01.T01:CDS |
| TTGTGAATGTAACAGGCGAG+GGG | 0.684781 | 5:-11352625 | MsG0580024894.01.T01:intron |
| TGGATGCTTGACAAATTGGG+TGG | 0.687057 | 5:-11352562 | MsG0580024894.01.T01:CDS |
| AGTTGCAAACTCATGACCAG+TGG | 0.709942 | 5:+11350972 | None:intergenic |
| AATGTAGTTATGGTGACTGG+TGG | 0.733221 | 5:-11351075 | MsG0580024894.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACATTAAAATCAAATATAAA+CGG | + | Chr5:11349825-11349844 | None:intergenic | 10.0% |
| !!! | AAATTTTAAAAATACAATCA+AGG | + | Chr5:11351107-11351126 | None:intergenic | 10.0% |
| !!! | ATTTATATGTTTTCTTTTTA+GGG | - | Chr5:11352571-11352590 | MsG0580024894.01.T01:CDS | 10.0% |
| !!! | TATTTATATGTTTTCTTTTT+AGG | - | Chr5:11352570-11352589 | MsG0580024894.01.T01:CDS | 10.0% |
| !!! | TTTATCATTATTTATTTTCT+GGG | - | Chr5:11349733-11349752 | MsG0580024894.01.T01:three_prime_UTR | 10.0% |
| !! | AAATGCTATTAAAATTAAGT+AGG | - | Chr5:11353084-11353103 | MsG0580024894.01.T01:intron | 15.0% |
| !! | AAATGCTATTAAAATTAAGT+AGG | + | Chr5:11353103-11353084 | None:intergenic | 15.0% |
| !! | AATGCTATTAAAATTAAGTA+GGG | - | Chr5:11353085-11353104 | MsG0580024894.01.T01:intron | 15.0% |
| !! | AATGCTATTAAAATTAAGTA+GGG | + | Chr5:11353104-11353085 | None:intergenic | 15.0% |
| !! | AGATAAAAAGTAATAAAATC+TGG | + | Chr5:11352836-11352855 | None:intergenic | 15.0% |
| !! | ATATTATAATTAACATGTGA+TGG | - | Chr5:11351488-11351507 | MsG0580024894.01.T01:intron | 15.0% |
| !! | CAAATTCAAAAATTTATCTT+AGG | + | Chr5:11350307-11350326 | None:intergenic | 15.0% |
| !! | TTAATCAAATTAAGAGTTTA+AGG | - | Chr5:11352994-11353013 | MsG0580024894.01.T01:intron | 15.0% |
| !! | TTCAAAAATTTAAGAGTTTA+AGG | - | Chr5:11352967-11352986 | MsG0580024894.01.T01:intron | 15.0% |
| !!! | AATTTTGCAATAATTTTTTG+CGG | + | Chr5:11352801-11352820 | None:intergenic | 15.0% |
| !!! | ATTTTTTGCATGAAATTTAT+AGG | - | Chr5:11350490-11350509 | MsG0580024894.01.T01:three_prime_UTR | 15.0% |
| !!! | CTAAGATAAATTTTTGAATT+TGG | - | Chr5:11350305-11350324 | MsG0580024894.01.T01:intron | 15.0% |
| !!! | CTTTATCATTATTTATTTTC+TGG | - | Chr5:11349732-11349751 | MsG0580024894.01.T01:three_prime_UTR | 15.0% |
| !!! | GTAATTTGATTTATGATATT+AGG | - | Chr5:11349793-11349812 | MsG0580024894.01.T01:intron | 15.0% |
| !!! | GTATTTTTAAAATTTGTATC+TGG | - | Chr5:11351112-11351131 | MsG0580024894.01.T01:CDS | 15.0% |
| !! | AAAAAATAAACCAATCCAAA+CGG | + | Chr5:11349932-11349951 | None:intergenic | 20.0% |
| !! | AAACAAATTTGAATTGAGTA+CGG | + | Chr5:11352706-11352725 | None:intergenic | 20.0% |
| !! | ATTCTATGAATCATTTGATT+TGG | - | Chr5:11351075-11351094 | MsG0580024894.01.T01:CDS | 20.0% |
| !! | ATTTCATCAAATTTGATGTT+GGG | - | Chr5:11351859-11351878 | MsG0580024894.01.T01:intron | 20.0% |
| !! | TAAAACAAAAGCAAAATGTA+TGG | + | Chr5:11352495-11352514 | None:intergenic | 20.0% |
| !! | TATCATAAATCAAATTACAC+AGG | + | Chr5:11349791-11349810 | None:intergenic | 20.0% |
| !! | TATTAAATTAACTGTCATTG+AGG | - | Chr5:11352076-11352095 | MsG0580024894.01.T01:intron | 20.0% |
| !! | TTATCATTCAAGCTTAATAT+TGG | - | Chr5:11352303-11352322 | MsG0580024894.01.T01:CDS | 20.0% |
| !!! | AGATTTATTTTATGTATGCA+TGG | - | Chr5:11351566-11351585 | MsG0580024894.01.T01:intron | 20.0% |
| !!! | ATCATATTTCAATTGATTCA+AGG | - | Chr5:11350439-11350458 | MsG0580024894.01.T01:three_prime_UTR | 20.0% |
| ! | AAAAATAAGTCAATCCAAAC+GGG | - | Chr5:11350126-11350145 | MsG0580024894.01.T01:intron | 25.0% |
| ! | AATGTTGTATAAATCAGTGA+TGG | - | Chr5:11353412-11353431 | MsG0580024894.01.T01:five_prime_UTR | 25.0% |
| ! | AGAGATCAGTAATCAAATAA+AGG | + | Chr5:11351243-11351262 | None:intergenic | 25.0% |
| ! | ATAAAAAACATGCCAAATAC+TGG | + | Chr5:11350973-11350992 | None:intergenic | 25.0% |
| ! | CAAAAATAAGTCAATCCAAA+CGG | - | Chr5:11350125-11350144 | MsG0580024894.01.T01:intron | 25.0% |
| ! | CAAAATTAGAACACTATGAA+AGG | + | Chr5:11352933-11352952 | None:intergenic | 25.0% |
| ! | CAGTGTACATATAAAAAGAA+GGG | + | Chr5:11353159-11353178 | None:intergenic | 25.0% |
| ! | CTTGAATGATAACACAAAAA+AGG | + | Chr5:11352295-11352314 | None:intergenic | 25.0% |
| ! | GATTTCATCAAATTTGATGT+TGG | - | Chr5:11351858-11351877 | MsG0580024894.01.T01:intron | 25.0% |
| ! | TCAATCAAGCTCAAAATTAA+GGG | + | Chr5:11349854-11349873 | None:intergenic | 25.0% |
| ! | TGATGTATTATAGCAAAGTA+TGG | - | Chr5:11350826-11350845 | MsG0580024894.01.T01:intron | 25.0% |
| ! | TTCAAGCTTAATATTGGTAA+TGG | - | Chr5:11352309-11352328 | MsG0580024894.01.T01:CDS | 25.0% |
| !! | CGAAAATTTATTTGGAGTTT+AGG | - | Chr5:11349763-11349782 | MsG0580024894.01.T01:three_prime_UTR | 25.0% |
| !! | GTTTGTTGCGAAAATTTATT+TGG | - | Chr5:11349755-11349774 | MsG0580024894.01.T01:three_prime_UTR | 25.0% |
| !! | TTTTTATATGTACACTGCAT+AGG | - | Chr5:11353162-11353181 | MsG0580024894.01.T01:intron | 25.0% |
| !!! | AATCAAACTTTGTTTTAGCA+GGG | - | Chr5:11353023-11353042 | MsG0580024894.01.T01:intron | 25.0% |
| !!! | GAACTTTGATTTTTGATCTT+AGG | - | Chr5:11350169-11350188 | MsG0580024894.01.T01:intron | 25.0% |
| !!! | GTTTTATCTGAAGTTAAAAG+TGG | - | Chr5:11350898-11350917 | MsG0580024894.01.T01:CDS | 25.0% |
| !!! | TAATCAAACTTTGTTTTAGC+AGG | - | Chr5:11353022-11353041 | MsG0580024894.01.T01:intron | 25.0% |
| !!! | TTTGGCATGTTTTTTATTAC+TGG | - | Chr5:11350976-11350995 | MsG0580024894.01.T01:CDS | 25.0% |
| AGAAGGAGAAAAATCGAAAA+TGG | - | Chr5:11349571-11349590 | MsG0580024894.01.T01:three_prime_UTR | 30.0% | |
| ATGGTGTAATTAACATGTGA+TGG | - | Chr5:11351585-11351604 | MsG0580024894.01.T01:intron | 30.0% | |
| ATGTTAAACACACGACATAA+AGG | + | Chr5:11350231-11350250 | None:intergenic | 30.0% | |
| ATTCATAGAATTCTTTCACG+AGG | + | Chr5:11351066-11351085 | None:intergenic | 30.0% | |
| CAGTGCAGAAAAACAAAATT+AGG | + | Chr5:11352674-11352693 | None:intergenic | 30.0% | |
| CTCAATCAAGCTCAAAATTA+AGG | + | Chr5:11349855-11349874 | None:intergenic | 30.0% | |
| GCAAAAAATTACATCAGTCT+TGG | + | Chr5:11350479-11350498 | None:intergenic | 30.0% | |
| GCAGTGTACATATAAAAAGA+AGG | + | Chr5:11353160-11353179 | None:intergenic | 30.0% | |
| GTATTATAGCAAAGTATGGT+AGG | - | Chr5:11350830-11350849 | MsG0580024894.01.T01:intron | 30.0% | |
| TAAATAAGTCGATCCAAACA+TGG | - | Chr5:11349897-11349916 | MsG0580024894.01.T01:intron | 30.0% | |
| TAAATAAGTTGCCTGATCTT+CGG | - | Chr5:11351037-11351056 | MsG0580024894.01.T01:CDS | 30.0% | |
| TATGTGATCAACTGGTATTA+TGG | + | Chr5:11352375-11352394 | None:intergenic | 30.0% | |
| TTAGACGATCTATTGTAACA+TGG | + | Chr5:11350945-11350964 | None:intergenic | 30.0% | |
| TTTGAATCTCATCTTCGTAA+TGG | - | Chr5:11349632-11349651 | MsG0580024894.01.T01:three_prime_UTR | 30.0% | |
| ! | AAGAACAGAGAAAAGCATAA+GGG | - | Chr5:11351933-11351952 | MsG0580024894.01.T01:intron | 30.0% |
| ! | TGAACGTCTTCTATCAATTT+TGG | - | Chr5:11352214-11352233 | MsG0580024894.01.T01:intron | 30.0% |
| !! | TACAAGGTCGCTATTTTATA+GGG | + | Chr5:11352614-11352633 | None:intergenic | 30.0% |
| !! | TTACAAGGTCGCTATTTTAT+AGG | + | Chr5:11353134-11353115 | None:intergenic | 30.0% |
| !! | TTACAAGGTCGCTATTTTAT+GGG | - | Chr5:11353115-11353134 | MsG0580024894.01.T01:intron | 30.0% |
| AAGCCATTCAAAGTATGCTA+CGG | + | Chr5:11351289-11351308 | None:intergenic | 35.0% | |
| AAGTAGGGACTAAACTTACA+AGG | - | Chr5:11353100-11353119 | MsG0580024894.01.T01:intron | 35.0% | |
| AAGTAGGGACTAAACTTACA+AGG | + | Chr5:11353119-11353100 | None:intergenic | 35.0% | |
| AATGTGTTCACTATTGGCAA+GGG | - | Chr5:11352017-11352036 | MsG0580024894.01.T01:intron | 35.0% | |
| AATTTAATACCCTTGCCCTT+GGG | + | Chr5:11352065-11352084 | None:intergenic | 35.0% | |
| ACATAACCAGAGCTGAAATT+GGG | - | Chr5:11352390-11352409 | MsG0580024894.01.T01:CDS | 35.0% | |
| AGCAAAGTATGGTAGGTAAA+TGG | - | Chr5:11350837-11350856 | MsG0580024894.01.T01:CDS | 35.0% | |
| CAAAAAAGGACTACAAGTAG+AGG | + | Chr5:11352281-11352300 | None:intergenic | 35.0% | |
| CATTGGATGCTTGACAAATT+GGG | - | Chr5:11350392-11350411 | MsG0580024894.01.T01:three_prime_UTR | 35.0% | |
| CGATCCAAACATGGTTTAAT+GGG | - | Chr5:11349906-11349925 | MsG0580024894.01.T01:intron | 35.0% | |
| GAAAGCTCTCATTTGTCTTA+GGG | + | Chr5:11351155-11351174 | None:intergenic | 35.0% | |
| GATCAACTGGTATTATGGTA+AGG | + | Chr5:11352370-11352389 | None:intergenic | 35.0% | |
| GCATTATTCACAACATGTCA+AGG | - | Chr5:11349993-11350012 | MsG0580024894.01.T01:intron | 35.0% | |
| TAAAATCCCAATTTCAGCTC+TGG | + | Chr5:11352399-11352418 | None:intergenic | 35.0% | |
| TAATTTAATACCCTTGCCCT+TGG | + | Chr5:11352066-11352085 | None:intergenic | 35.0% | |
| TATATGTACACTGCATAGGA+TGG | - | Chr5:11353166-11353185 | MsG0580024894.01.T01:intron | 35.0% | |
| TCAGAATAGCAATGACTTCA+CGG | + | Chr5:11350607-11350626 | None:intergenic | 35.0% | |
| TCGATCCAAACATGGTTTAA+TGG | - | Chr5:11349905-11349924 | MsG0580024894.01.T01:intron | 35.0% | |
| TGATGTTGGGAATGTAGTTA+TGG | - | Chr5:11351872-11351891 | MsG0580024894.01.T01:intron | 35.0% | |
| TGGATGTTTGTGAATGTAAC+AGG | - | Chr5:11350325-11350344 | MsG0580024894.01.T01:intron | 35.0% | |
| TTCCTTGTATGTGATGTACA+TGG | - | Chr5:11351682-11351701 | MsG0580024894.01.T01:intron | 35.0% | |
| TTTGGACAATCAACATGCTT+TGG | - | Chr5:11350738-11350757 | MsG0580024894.01.T01:three_prime_UTR | 35.0% | |
| ! | ACACAGTGTTGTTACTGAAA+TGG | - | Chr5:11349696-11349715 | MsG0580024894.01.T01:three_prime_UTR | 35.0% |
| ! | ACATGTTACATGTTAGTCTG+AGG | - | Chr5:11353261-11353280 | MsG0580024894.01.T01:intron | 35.0% |
| ! | CAAGAACAGAGAAAAGCATA+AGG | - | Chr5:11351932-11351951 | MsG0580024894.01.T01:intron | 35.0% |
| ! | GTTTGATTTCAGAATCAACC+AGG | + | Chr5:11352543-11352562 | None:intergenic | 35.0% |
| !! | AATCAGTGATGGATCCATAT+TGG | - | Chr5:11353423-11353442 | MsG0580024894.01.T01:five_prime_UTR | 35.0% |
| !! | CTTACAAGGTCGCTATTTTA+TGG | - | Chr5:11353114-11353133 | MsG0580024894.01.T01:intron | 35.0% |
| !! | GGTTGATTCTGAAATCAAAC+TGG | - | Chr5:11352543-11352562 | MsG0580024894.01.T01:intron | 35.0% |
| !! | GTTTGAAGAAGCATTTGAAG+AGG | - | Chr5:11350354-11350373 | MsG0580024894.01.T01:intron | 35.0% |
| !! | TACAAGGTCGCTATTTTATG+GGG | - | Chr5:11353116-11353135 | MsG0580024894.01.T01:intron | 35.0% |
| !! | TGAATCATTTGATTTGGCTG+TGG | - | Chr5:11351081-11351100 | MsG0580024894.01.T01:CDS | 35.0% |
| !!! | CTGAGGTATTTGTTTTGTGT+TGG | - | Chr5:11353278-11353297 | MsG0580024894.01.T01:intron | 35.0% |
| !!! | TGGTGATTGTTTTGACATCA+AGG | + | Chr5:11352475-11352494 | None:intergenic | 35.0% |
| AAGGTTCGTTCAGTGCAATT+TGG | - | Chr5:11351720-11351739 | MsG0580024894.01.T01:intron | 40.0% | |
| AATGTAGTTATGGTGACTGG+TGG | - | Chr5:11351882-11351901 | MsG0580024894.01.T01:intron | 40.0% | |
| ACTCCGTAGCATACTTTGAA+TGG | - | Chr5:11351283-11351302 | MsG0580024894.01.T01:intron | 40.0% | |
| ACTTATCCAGCTGGATTCAT+GGG | - | Chr5:11350671-11350690 | MsG0580024894.01.T01:three_prime_UTR | 40.0% | |
| AGGTTCGTTCAGTGCAATTT+GGG | - | Chr5:11351721-11351740 | MsG0580024894.01.T01:intron | 40.0% | |
| ATGTGTTCACTATTGGCAAG+GGG | - | Chr5:11352018-11352037 | MsG0580024894.01.T01:intron | 40.0% | |
| CAACTGGTATTATGGTAAGG+TGG | + | Chr5:11352367-11352386 | None:intergenic | 40.0% | |
| CAATGTGTTCACTATTGGCA+AGG | - | Chr5:11352016-11352035 | MsG0580024894.01.T01:intron | 40.0% | |
| CACATAACCAGAGCTGAAAT+TGG | - | Chr5:11352389-11352408 | MsG0580024894.01.T01:CDS | 40.0% | |
| CGAAAGCTCTCATTTGTCTT+AGG | + | Chr5:11351156-11351175 | None:intergenic | 40.0% | |
| CGTCTAAGTTCACCAGTATT+TGG | - | Chr5:11350958-11350977 | MsG0580024894.01.T01:CDS | 40.0% | |
| CTGGTCAATGTGTTCACTAT+TGG | - | Chr5:11352011-11352030 | MsG0580024894.01.T01:intron | 40.0% | |
| GCATTGGATGCTTGACAAAT+TGG | - | Chr5:11350391-11350410 | MsG0580024894.01.T01:three_prime_UTR | 40.0% | |
| GTGATGGTTGTTACTGTGAA+TGG | - | Chr5:11351504-11351523 | MsG0580024894.01.T01:intron | 40.0% | |
| TGCCATGTACATCACATACA+AGG | + | Chr5:11351687-11351706 | None:intergenic | 40.0% | |
| TTCGCAAGATCAGAATGAGT+GGG | + | Chr5:11350559-11350578 | None:intergenic | 40.0% | |
| TTGTCAAGCATCCAATGCTT+GGG | + | Chr5:11350389-11350408 | None:intergenic | 40.0% | |
| TTTCGCAAGATCAGAATGAG+TGG | + | Chr5:11350560-11350579 | None:intergenic | 40.0% | |
| TTTGTCAAGCATCCAATGCT+TGG | + | Chr5:11350390-11350409 | None:intergenic | 40.0% | |
| TTTGTGAATGTAACAGGCGA+GGG | - | Chr5:11350331-11350350 | MsG0580024894.01.T01:intron | 40.0% | |
| ! | ATCAATCGAGCACGTTCTTT+TGG | - | Chr5:11353318-11353337 | MsG0580024894.01.T01:intron | 40.0% |
| !!! | CAACAATCTTGTTTTCCTCC+AGG | + | Chr5:11351839-11351858 | None:intergenic | 40.0% |
| ACCAACACTAAGAACCCGTT+TGG | + | Chr5:11350143-11350162 | None:intergenic | 45.0% | |
| ACGGCCCATTAAACCATGTT+TGG | + | Chr5:11349913-11349932 | None:intergenic | 45.0% | |
| ACTGACAAGACTTATCCAGC+TGG | - | Chr5:11350662-11350681 | MsG0580024894.01.T01:three_prime_UTR | 45.0% | |
| AGTCAGAGATGATGAGGCAA+AGG | - | Chr5:11351215-11351234 | MsG0580024894.01.T01:CDS | 45.0% | |
| AGTTGCAAACTCATGACCAG+TGG | + | Chr5:11351988-11352007 | None:intergenic | 45.0% | |
| ATGTACACTGCATAGGATGG+AGG | - | Chr5:11353169-11353188 | MsG0580024894.01.T01:intron | 45.0% | |
| CAACGACATGTCCTTGTTGA+TGG | - | Chr5:11350629-11350648 | MsG0580024894.01.T01:three_prime_UTR | 45.0% | |
| CATCTCTGACTGAATGGAGA+CGG | + | Chr5:11351206-11351225 | None:intergenic | 45.0% | |
| CATGTGCGACAAGAACTATG+AGG | - | Chr5:11353383-11353402 | MsG0580024894.01.T01:intron | 45.0% | |
| CCATACCTGAACACCTATGA+TGG | - | Chr5:11351756-11351775 | MsG0580024894.01.T01:CDS | 45.0% | |
| CCATCATAGGTGTTCAGGTA+TGG | + | Chr5:11351759-11351778 | None:intergenic | 45.0% | |
| CCATTCAGTCAGAGATGATG+AGG | - | Chr5:11351209-11351228 | MsG0580024894.01.T01:CDS | 45.0% | |
| CCTCATCATCTCTGACTGAA+TGG | + | Chr5:11351212-11351231 | None:intergenic | 45.0% | |
| GACTTATCCAGCTGGATTCA+TGG | - | Chr5:11350670-11350689 | MsG0580024894.01.T01:three_prime_UTR | 45.0% | |
| GCTCTGGTTATGTGATCAAC+TGG | + | Chr5:11352383-11352402 | None:intergenic | 45.0% | |
| GGCTAATGACACTATCAAGC+TGG | - | Chr5:11351812-11351831 | MsG0580024894.01.T01:CDS | 45.0% | |
| GGGAATGTAGTTATGGTGAC+TGG | - | Chr5:11351879-11351898 | MsG0580024894.01.T01:intron | 45.0% | |
| GGTGACTGGTGGTAAGAATA+GGG | - | Chr5:11351893-11351912 | MsG0580024894.01.T01:intron | 45.0% | |
| GTGACTGGTGGTAAGAATAG+GGG | - | Chr5:11351894-11351913 | MsG0580024894.01.T01:intron | 45.0% | |
| GTTTGTGAATGTAACAGGCG+AGG | - | Chr5:11350330-11350349 | MsG0580024894.01.T01:intron | 45.0% | |
| TAACTGTCATTGAGGAAGCG+AGG | - | Chr5:11352084-11352103 | MsG0580024894.01.T01:intron | 45.0% | |
| TCAGAATCAACCAGGCAAGT+AGG | + | Chr5:11352535-11352554 | None:intergenic | 45.0% | |
| TCAGTGCAATTTGGGCAGAA+AGG | - | Chr5:11351729-11351748 | MsG0580024894.01.T01:intron | 45.0% | |
| TCATGAGTTTGCAACTCGTC+TGG | - | Chr5:11351992-11352011 | MsG0580024894.01.T01:intron | 45.0% | |
| TCCTGACTTTGCCATCAACA+AGG | + | Chr5:11350643-11350662 | None:intergenic | 45.0% | |
| TCGCACATGAACTCAATGTC+AGG | + | Chr5:11353372-11353391 | None:intergenic | 45.0% | |
| TGACTGAATGGAGACGGAAA+CGG | + | Chr5:11351200-11351219 | None:intergenic | 45.0% | |
| TGACTGGTGGTAAGAATAGG+GGG | - | Chr5:11351895-11351914 | MsG0580024894.01.T01:intron | 45.0% | |
| TGGATGCTTGACAAATTGGG+TGG | - | Chr5:11350395-11350414 | MsG0580024894.01.T01:three_prime_UTR | 45.0% | |
| TGGTGACTGGTGGTAAGAAT+AGG | - | Chr5:11351892-11351911 | MsG0580024894.01.T01:intron | 45.0% | |
| TGTACACTGCATAGGATGGA+GGG | - | Chr5:11353170-11353189 | MsG0580024894.01.T01:intron | 45.0% | |
| TGTCAAGCATCCAATGCTTG+GGG | + | Chr5:11350388-11350407 | None:intergenic | 45.0% | |
| TTCATACCCATGAATCCAGC+TGG | + | Chr5:11350680-11350699 | None:intergenic | 45.0% | |
| TTGTGAATGTAACAGGCGAG+GGG | - | Chr5:11350332-11350351 | MsG0580024894.01.T01:intron | 45.0% | |
| ! | ACATGGTTTAATGGGCCGTT+TGG | - | Chr5:11349914-11349933 | MsG0580024894.01.T01:intron | 45.0% |
| ! | AGTGTCATTAGCCCTGATGA+CGG | + | Chr5:11351805-11351824 | None:intergenic | 45.0% |
| ! | CTGAACGTGGATTGTCTCAA+AGG | + | Chr5:11351961-11351980 | None:intergenic | 45.0% |
| ! | GTTTAATGGGCCGTTTGGAT+TGG | - | Chr5:11349919-11349938 | MsG0580024894.01.T01:intron | 45.0% |
| ! | TCCAAACGGGTTCTTAGTGT+TGG | - | Chr5:11350139-11350158 | MsG0580024894.01.T01:intron | 45.0% |
| !! | CGTTTGCTGTATGACACCAA+AGG | - | Chr5:11351174-11351193 | MsG0580024894.01.T01:CDS | 45.0% |
| !! | CTTTGAGACAATCCACGTTC+AGG | - | Chr5:11351959-11351978 | MsG0580024894.01.T01:intron | 45.0% |
| !! | GACATCAAGGCTCTGAAGTT+GGG | + | Chr5:11352462-11352481 | None:intergenic | 45.0% |
| !! | TCCTTGTTGATGGCAAAGTC+AGG | - | Chr5:11350639-11350658 | MsG0580024894.01.T01:three_prime_UTR | 45.0% |
| !! | TGACATCAAGGCTCTGAAGT+TGG | + | Chr5:11352463-11352482 | None:intergenic | 45.0% |
| !!! | AATAATTGATTAATTTATTT+TGG | - | Chr5:11350720-11350739 | MsG0580024894.01.T01:three_prime_UTR | 5.0% |
| !!! | ATAAGTAAATTTTTTTTTAT+AGG | - | Chr5:11353055-11353074 | MsG0580024894.01.T01:intron | 5.0% |
| !!! | TAAGTAAATTTTTTTTTATA+GGG | - | Chr5:11353056-11353075 | MsG0580024894.01.T01:intron | 5.0% |
| AATGAGTGGGAGACATTCCC+TGG | + | Chr5:11350546-11350565 | None:intergenic | 50.0% | |
| ACGGATAGTGCGACCATCAT+AGG | + | Chr5:11351772-11351791 | None:intergenic | 50.0% | |
| AGACATTCCCTGGACTTGTG+TGG | + | Chr5:11350536-11350555 | None:intergenic | 50.0% | |
| ATCTGGACCACACAAGTCCA+GGG | - | Chr5:11350526-11350545 | MsG0580024894.01.T01:three_prime_UTR | 50.0% | |
| ATGGCAGTTCAAGCTGTGCA+AGG | - | Chr5:11351701-11351720 | MsG0580024894.01.T01:intron | 50.0% | |
| CATTGAGGAAGCGAGGAAGA+GGG | - | Chr5:11352091-11352110 | MsG0580024894.01.T01:intron | 50.0% | |
| CCATGGGTTTCTCTTCCCAA+GGG | - | Chr5:11352047-11352066 | MsG0580024894.01.T01:intron | 50.0% | |
| CTACAGAGTGGAGAGAGTGA+TGG | + | Chr5:11349542-11349561 | None:intergenic | 50.0% | |
| GACTTGTGTGGTCCAGATGA+GGG | + | Chr5:11350524-11350543 | None:intergenic | 50.0% | |
| GTACACTGCATAGGATGGAG+GGG | - | Chr5:11353171-11353190 | MsG0580024894.01.T01:intron | 50.0% | |
| GTCAAGCATCCAATGCTTGG+GGG | + | Chr5:11350387-11350406 | None:intergenic | 50.0% | |
| GTTTCTCTTCCCAAGGGCAA+GGG | - | Chr5:11352053-11352072 | MsG0580024894.01.T01:intron | 50.0% | |
| TAGGCTCCTAAACCCTCATC+TGG | - | Chr5:11350509-11350528 | MsG0580024894.01.T01:three_prime_UTR | 50.0% | |
| TCAACCAGGCAAGTAGGTAC+TGG | + | Chr5:11352529-11352548 | None:intergenic | 50.0% | |
| TCACGAGGATACCGAAGATC+AGG | + | Chr5:11351051-11351070 | None:intergenic | 50.0% | |
| TCATTGAGGAAGCGAGGAAG+AGG | - | Chr5:11352090-11352109 | MsG0580024894.01.T01:intron | 50.0% | |
| TGACACTATCAAGCTGGACC+TGG | - | Chr5:11351818-11351837 | MsG0580024894.01.T01:CDS | 50.0% | |
| TGCGACCATCATAGGTGTTC+AGG | + | Chr5:11351764-11351783 | None:intergenic | 50.0% | |
| TGTGGTCCAGATGAGGGTTT+AGG | + | Chr5:11350518-11350537 | None:intergenic | 50.0% | |
| ! | GTGTCATTAGCCCTGATGAC+GGG | + | Chr5:11351804-11351823 | None:intergenic | 50.0% |
| ! | TGTCATTAGCCCTGATGACG+GGG | + | Chr5:11351803-11351822 | None:intergenic | 50.0% |
| !! | AGGCTCTGAAGTTGGGCATT+AGG | + | Chr5:11352455-11352474 | None:intergenic | 50.0% |
| ATCCACGTTCAGGATGCCAC+TGG | - | Chr5:11351969-11351988 | MsG0580024894.01.T01:intron | 55.0% | |
| ATGGAGACGGAAACGGCCTT+TGG | + | Chr5:11351193-11351212 | None:intergenic | 55.0% | |
| CACTATCAAGCTGGACCTGG+AGG | - | Chr5:11351821-11351840 | MsG0580024894.01.T01:CDS | 55.0% | |
| CATCTGGACCACACAAGTCC+AGG | - | Chr5:11350525-11350544 | MsG0580024894.01.T01:three_prime_UTR | 55.0% | |
| CCCTTGGGAAGAGAAACCCA+TGG | + | Chr5:11352050-11352069 | None:intergenic | 55.0% | |
| CTCTGTAGCTGCTGCGAAGA+AGG | - | Chr5:11349554-11349573 | MsG0580024894.01.T01:three_prime_UTR | 55.0% | |
| GCCATGGGTTTCTCTTCCCA+AGG | - | Chr5:11352046-11352065 | MsG0580024894.01.T01:intron | 55.0% | |
| GGACTTGTGTGGTCCAGATG+AGG | + | Chr5:11350525-11350544 | None:intergenic | 55.0% | |
| GGTTTCTCTTCCCAAGGGCA+AGG | - | Chr5:11352052-11352071 | MsG0580024894.01.T01:intron | 55.0% | |
| TCTTCGCAGCAGCTACAGAG+TGG | + | Chr5:11349554-11349573 | None:intergenic | 55.0% | |
| TGGCAAGGGGACAAAGCCAT+GGG | - | Chr5:11352031-11352050 | MsG0580024894.01.T01:intron | 55.0% | |
| TTACCCAGACCCCGTCATCA+GGG | - | Chr5:11351791-11351810 | MsG0580024894.01.T01:CDS | 55.0% | |
| TTGGCAAGGGGACAAAGCCA+TGG | - | Chr5:11352030-11352049 | MsG0580024894.01.T01:intron | 55.0% | |
| ! | GAGTGGAGAGAGTGATGGTG+CGG | + | Chr5:11349537-11349556 | None:intergenic | 55.0% |
| ! | GGTAAGAATAGGGGGCGTGT+TGG | - | Chr5:11351903-11351922 | MsG0580024894.01.T01:intron | 55.0% |
| !! | TGATGACGGGGTCTGGGTAA+CGG | + | Chr5:11351791-11351810 | None:intergenic | 55.0% |
| CGCTCCAGTACCTACTTGCC+TGG | - | Chr5:11352522-11352541 | MsG0580024894.01.T01:intron | 60.0% | |
| GACCAGTGGCATCCTGAACG+TGG | + | Chr5:11351974-11351993 | None:intergenic | 60.0% | |
| GGCTCAATGCCCCCAAGCAT+TGG | - | Chr5:11350375-11350394 | MsG0580024894.01.T01:intron | 60.0% | |
| GTTACCCAGACCCCGTCATC+AGG | - | Chr5:11351790-11351809 | MsG0580024894.01.T01:CDS | 60.0% | |
| !! | TAGCCCTGATGACGGGGTCT+GGG | + | Chr5:11351797-11351816 | None:intergenic | 60.0% |
| !! | TTAGCCCTGATGACGGGGTC+TGG | + | Chr5:11351798-11351817 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 11349526 | 11353453 | 11349526 | ID=MsG0580024894.01;Name=MsG0580024894.01 |
| Chr5 | mRNA | 11349526 | 11353453 | 11349526 | ID=MsG0580024894.01.T01;Parent=MsG0580024894.01;Name=MsG0580024894.01.T01;_AED=0.45;_eAED=0.45;_QI=64|1|1|1|0.6|0.33|6|731|265 |
| Chr5 | five_prime_UTR | 11353390 | 11353453 | 11353390 | ID=MsG0580024894.01.T01:five_prime_utr;Parent=MsG0580024894.01.T01 |
| Chr5 | CDS | 11353387 | 11353389 | 11353387 | ID=MsG0580024894.01.T01:cds;Parent=MsG0580024894.01.T01 |
| Chr5 | CDS | 11352555 | 11352632 | 11352555 | ID=MsG0580024894.01.T01:cds;Parent=MsG0580024894.01.T01 |
| Chr5 | CDS | 11352287 | 11352467 | 11352287 | ID=MsG0580024894.01.T01:cds;Parent=MsG0580024894.01.T01 |
| Chr5 | CDS | 11351743 | 11351840 | 11351743 | ID=MsG0580024894.01.T01:cds;Parent=MsG0580024894.01.T01 |
| Chr5 | CDS | 11350834 | 11351271 | 11350834 | ID=MsG0580024894.01.T01:cds;Parent=MsG0580024894.01.T01 |
| Chr5 | three_prime_UTR | 11350388 | 11350833 | 11350388 | ID=MsG0580024894.01.T01:three_prime_utr;Parent=MsG0580024894.01.T01 |
| Chr5 | three_prime_UTR | 11349526 | 11349810 | 11349526 | ID=MsG0580024894.01.T01:three_prime_utr;Parent=MsG0580024894.01.T01 |
| Chr5 | mRNA | 11350591 | 11353453 | 11350591 | ID=MsG0580024894.01.T02;Parent=MsG0580024894.01;Name=MsG0580024894.01.T02;_AED=0.47;_eAED=0.47;_QI=64|1|1|1|0.6|0.33|6|223|265 |
| Chr5 | exon | 11350591 | 11350787 | 11350591 | ID=MsG0580024894.01.T02:exon:3144;Parent=MsG0580024894.01.T02 |
| Chr5 | exon | 11350808 | 11351271 | 11350808 | ID=MsG0580024894.01.T02:exon:3143;Parent=MsG0580024894.01.T02 |
| Chr5 | five_prime_UTR | 11353390 | 11353453 | 11353390 | ID=MsG0580024894.01.T02:five_prime_utr;Parent=MsG0580024894.01.T02 |
| Chr5 | CDS | 11353387 | 11353389 | 11353387 | ID=MsG0580024894.01.T02:cds;Parent=MsG0580024894.01.T02 |
| Chr5 | CDS | 11352555 | 11352632 | 11352555 | ID=MsG0580024894.01.T02:cds;Parent=MsG0580024894.01.T02 |
| Chr5 | CDS | 11352287 | 11352467 | 11352287 | ID=MsG0580024894.01.T02:cds;Parent=MsG0580024894.01.T02 |
| Chr5 | CDS | 11351743 | 11351840 | 11351743 | ID=MsG0580024894.01.T02:cds;Parent=MsG0580024894.01.T02 |
| Chr5 | CDS | 11350834 | 11351271 | 11350834 | ID=MsG0580024894.01.T02:cds;Parent=MsG0580024894.01.T02 |
| Chr5 | three_prime_UTR | 11350808 | 11350833 | 11350808 | ID=MsG0580024894.01.T02:three_prime_utr;Parent=MsG0580024894.01.T02 |
| Chr5 | three_prime_UTR | 11350591 | 11350787 | 11350591 | ID=MsG0580024894.01.T02:three_prime_utr;Parent=MsG0580024894.01.T02 |
| Chr5 | mRNA | 11349526 | 11352694 | 11349526 | ID=MsG0580024894.01.T03;Parent=MsG0580024894.01;Name=MsG0580024894.01.T03;_AED=0.45;_eAED=0.45;_QI=113|1|1|1|0.75|0.6|5|731|247 |
| Chr5 | exon | 11352555 | 11352694 | 11352555 | ID=MsG0580024894.01.T03:exon:3145;Parent=MsG0580024894.01.T03 |
| Chr5 | five_prime_UTR | 11352582 | 11352694 | 11352582 | ID=MsG0580024894.01.T03:five_prime_utr;Parent=MsG0580024894.01.T03 |
| Chr5 | CDS | 11352555 | 11352581 | 11352555 | ID=MsG0580024894.01.T03:cds;Parent=MsG0580024894.01.T03 |
| Chr5 | CDS | 11352287 | 11352467 | 11352287 | ID=MsG0580024894.01.T03:cds;Parent=MsG0580024894.01.T03 |
| Chr5 | CDS | 11351743 | 11351840 | 11351743 | ID=MsG0580024894.01.T03:cds;Parent=MsG0580024894.01.T03 |
| Chr5 | CDS | 11350834 | 11351271 | 11350834 | ID=MsG0580024894.01.T03:cds;Parent=MsG0580024894.01.T03 |
| Chr5 | three_prime_UTR | 11350388 | 11350833 | 11350388 | ID=MsG0580024894.01.T03:three_prime_utr;Parent=MsG0580024894.01.T03 |
| Chr5 | three_prime_UTR | 11349526 | 11349810 | 11349526 | ID=MsG0580024894.01.T03:three_prime_utr;Parent=MsG0580024894.01.T03 |
| Gene Sequence |
| Protein sequence |
