AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480020754.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480020754.01.T01 MTR_4g057890 98.859 526 6 0 1 526 1 526 0.0 1069
MsG0480020754.01.T01 MTR_4g057865 98.669 526 7 0 1 526 1 526 0.0 1068
MsG0480020754.01.T01 MTR_8g069775 61.554 489 186 2 38 524 18 506 0.0 590
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480020754.01.T01 AT1G08090 78.828 529 109 1 1 526 1 529 0.0 881
MsG0480020754.01.T01 AT5G60770 79.017 529 105 2 1 526 1 526 0.0 877
MsG0480020754.01.T01 AT1G08100 74.855 517 127 2 7 521 6 521 0.0 818
MsG0480020754.01.T01 AT5G60780 73.171 533 135 3 2 526 6 538 0.0 794
MsG0480020754.01.T01 AT3G45060 72.097 534 136 4 5 526 9 541 0.0 780
MsG0480020754.01.T01 AT1G12940 59.259 486 194 2 38 522 20 502 0.0 605
MsG0480020754.01.T01 AT5G14570 48.511 470 220 4 41 493 18 482 1.55e-151 443

Find 131 sgRNAs with CRISPR-Local

Find 158 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCATGTTATCATGGGTATTT+TGG 0.143284 4:+47665458 MsG0480020754.01.T01:CDS
GCCGGAGTCGCTTCGGTTTC+AGG 0.162646 4:+47665063 MsG0480020754.01.T01:CDS
TGCTGCTGGTTGGGGTAATA+TGG 0.200878 4:+47665326 MsG0480020754.01.T01:CDS
GGAATCATTGCTGCATCTTT+TGG 0.201038 4:+47666038 MsG0480020754.01.T01:CDS
ATCAACTGGTAATGCAAATT+TGG 0.211102 4:-47664866 None:intergenic
ATGTTTAATAGTAAAATTAT+TGG 0.217642 4:+47665288 MsG0480020754.01.T01:CDS
AAAATTATTGGACTTGTAAA+TGG 0.231743 4:+47665300 MsG0480020754.01.T01:CDS
CATTTGTTTCATGCCAATAT+TGG 0.240129 4:+47665256 MsG0480020754.01.T01:CDS
ACTGCTTTATGGTTACTCTA+TGG 0.275641 4:+47665733 MsG0480020754.01.T01:CDS
CAACAGCTTCAGGTCTTTCA+TGG 0.291908 4:+47666396 MsG0480020754.01.T01:CDS
CGTCGGATTTCGTGAGGTTA+AGG 0.293043 4:-47665032 None:intergenic
CACTCAGCTTATTATGCCTT+TGG 0.295935 4:+47665359 MsG0480020754.01.T01:CDS
GTTTATGATTGGTTTCTCTT+TGG 0.307610 4:+47665230 MsG0480020754.01.T01:CDS
AAATGGTACTGCTGCTGGTT+GGG 0.317688 4:+47665317 MsG0480020754.01.T01:CDS
GATGTTGCAGCAAGATTATT+CGG 0.318773 4:+47666104 MsG0480020754.01.T01:CDS
GGAATAATATCAGGTTTAAC+TGG 0.326492 4:+47666311 MsG0480020754.01.T01:CDS
TAGTGGGTAGGAGTTGTATT+TGG 0.332293 4:-47666644 None:intergenic
GGTTGCATCAGCCAAGTCTT+AGG 0.340353 4:+47666564 MsG0480020754.01.T01:CDS
TGAAAAGAGTTTGAAAACTT+TGG 0.345000 4:-47664902 None:intergenic
TTCATATCAAGAAGATCTTT+AGG 0.352927 4:+47666290 MsG0480020754.01.T01:CDS
GGTGCAATTTGTGACCTATT+AGG 0.354243 4:+47665111 MsG0480020754.01.T01:CDS
TCATTTGTTGAAAATGCTTC+TGG 0.358655 4:+47665192 MsG0480020754.01.T01:CDS
CGCCATTAGTCCCGATCATC+CGG 0.360837 4:+47665004 MsG0480020754.01.T01:CDS
ACATAGTACTCATCCAATAT+TGG 0.362676 4:-47665269 None:intergenic
TTCCGGCTGTGTGTAGCTTT+AGG 0.375698 4:-47666019 None:intergenic
AGAATGATATCCATGATAAA+TGG 0.376569 4:-47664951 None:intergenic
AGATCTTTAGGAATAATATC+AGG 0.377046 4:+47666302 MsG0480020754.01.T01:CDS
GCAGCATGTGGTGCAACATT+TGG 0.378132 4:+47666257 MsG0480020754.01.T01:CDS
CTTCTGGTTATATAGCAGTT+AGG 0.379548 4:+47665208 MsG0480020754.01.T01:CDS
TGGTTGGTTGCATGTTATCA+TGG 0.382144 4:+47665449 MsG0480020754.01.T01:CDS
GTGCTACTCCTTTCACTGCT+TGG 0.383160 4:+47665406 MsG0480020754.01.T01:CDS
ACTCCATGCATGGAGCTTCC+TGG 0.398240 4:-47664778 None:intergenic
GGTTGGGGTAATATGGGTGG+TGG 0.398747 4:+47665333 MsG0480020754.01.T01:CDS
AGCTCCATGCATGGAGTGAC+TGG 0.401149 4:+47664784 MsG0480020754.01.T01:CDS
GCAGGTGGAAACTTTGGTTC+CGG 0.404321 4:+47666335 MsG0480020754.01.T01:CDS
AACTTAGTTGCTCGTCCATT+CGG 0.406657 4:+47666068 MsG0480020754.01.T01:CDS
AACCATAACGTGGACCTAAT+AGG 0.411808 4:-47665125 None:intergenic
GCTGCTGGTTGGGGTAATAT+GGG 0.417787 4:+47665327 MsG0480020754.01.T01:CDS
TCGGCATGCGAGGAAGACTA+TGG 0.425122 4:+47666123 MsG0480020754.01.T01:CDS
GTTGGGGTAATATGGGTGGT+GGG 0.435234 4:+47665334 MsG0480020754.01.T01:CDS
ATAGCAGTTAGGTTTATGAT+TGG 0.436014 4:+47665219 MsG0480020754.01.T01:CDS
CTGCTTTATGGTTACTCTAT+GGG 0.436463 4:+47665734 MsG0480020754.01.T01:CDS
TGGATGGGTGCAATGATTGT+TGG 0.437054 4:+47666416 MsG0480020754.01.T01:CDS
AGAAAACTCCACCTAGGGTT+TGG 0.441383 4:-47666160 None:intergenic
AAAGATCTTCTTGATATGAA+TGG 0.442192 4:-47666287 None:intergenic
TATAACAATGGCTGATATTG+AGG 0.442270 4:+47664750 None:intergenic
AAATATCAACTGTGTTAATC+CGG 0.442980 4:-47666354 None:intergenic
GGTATGCTATAACAAATTAC+AGG 0.443291 4:+47665696 MsG0480020754.01.T01:CDS
GACCTATTAGGTCCACGTTA+TGG 0.448846 4:+47665123 MsG0480020754.01.T01:CDS
AACATTACCCTTCTTCTGTA+AGG 0.451966 4:-47665523 None:intergenic
ACTGGTGCAGGTGGAAACTT+TGG 0.451991 4:+47666329 MsG0480020754.01.T01:CDS
GGAAAATGAACAAATGCAAC+AGG 0.456403 4:-47666449 None:intergenic
TGAGAACCTTCCATTTATCA+TGG 0.456413 4:+47664941 MsG0480020754.01.T01:CDS
AAAAGATGCAGCAATGATTC+CGG 0.462118 4:-47666036 None:intergenic
AGCTTCAGGTCTTTCATGGA+TGG 0.465615 4:+47666400 MsG0480020754.01.T01:CDS
TAAGGTTGTCCCGGATGATC+GGG 0.469055 4:-47665014 None:intergenic
TTGCTGAGTATTTCTATGAC+AGG 0.469828 4:+47665783 MsG0480020754.01.T01:CDS
AACACTATTACACTTCTGAA+TGG 0.470788 4:+47666519 MsG0480020754.01.T01:CDS
TGGTAACGCCGGAGTCGCTT+CGG 0.471102 4:+47665056 MsG0480020754.01.T01:CDS
GGTTACCATCAGGTAAATCT+TGG 0.480850 4:-47665494 None:intergenic
GCTGATATTGAGGGTTCACC+AGG 0.480863 4:+47664760 MsG0480020754.01.T01:CDS
TCCCGGATGATCGGGACTAA+TGG 0.482655 4:-47665006 None:intergenic
CTTGTAAATGGTACTGCTGC+TGG 0.488890 4:+47665312 MsG0480020754.01.T01:CDS
TGGGTAGGAGTTGTATTTGG+AGG 0.492217 4:-47666641 None:intergenic
AATGGTACTGCTGCTGGTTG+GGG 0.493227 4:+47665318 MsG0480020754.01.T01:CDS
TCTTCCAGTCACTCCATGCA+TGG 0.494400 4:-47664788 None:intergenic
ATATCAGGTTTAACTGGTGC+AGG 0.496822 4:+47666317 MsG0480020754.01.T01:CDS
CCTTGGTGCCTTACAGAAGA+AGG 0.498271 4:+47665515 MsG0480020754.01.T01:CDS
TAAATGGTACTGCTGCTGGT+TGG 0.504033 4:+47665316 MsG0480020754.01.T01:CDS
TTGGGGTAATATGGGTGGTG+GGG 0.507796 4:+47665335 MsG0480020754.01.T01:CDS
CTATAACAAATTACAGGACA+TGG 0.513380 4:+47665702 MsG0480020754.01.T01:CDS
TCGTGAGGTTAAGGTTGTCC+CGG 0.513783 4:-47665023 None:intergenic
TTAAGGTTGTCCCGGATGAT+CGG 0.515983 4:-47665015 None:intergenic
GTGGTATCAGTTGGAACCAT+TGG 0.524676 4:-47664841 None:intergenic
GATTTGTGTTCAGAATCAAC+TGG 0.525048 4:-47664880 None:intergenic
ATGAAGATGAAGTACAGAAA+GGG 0.525551 4:+47666543 MsG0480020754.01.T01:CDS
AATGAAGATGAAGTACAGAA+AGG 0.527504 4:+47666542 MsG0480020754.01.T01:CDS
TCAATGATCCTCTTCTCAGT+TGG 0.538507 4:+47666227 MsG0480020754.01.T01:CDS
GATTTACCTGATGGTAACCT+TGG 0.538623 4:+47665498 MsG0480020754.01.T01:CDS
GTCATCAGTTGCTTCACCAA+TGG 0.548350 4:+47664825 MsG0480020754.01.T01:CDS
GGTTGGTTGCATGTTATCAT+GGG 0.550695 4:+47665450 MsG0480020754.01.T01:CDS
GCTTCAGGTCTTTCATGGAT+GGG 0.552112 4:+47666401 MsG0480020754.01.T01:CDS
ATAACAATGGCTGATATTGA+GGG 0.552556 4:+47664751 None:intergenic
ATGATAACATGCAACCAACC+AGG 0.556711 4:-47665447 None:intergenic
AACCTAAAGCTACACACAGC+CGG 0.558064 4:+47666017 MsG0480020754.01.T01:CDS
CTTGTGCTCCAACTGAGAAG+AGG 0.561854 4:-47666235 None:intergenic
GGCATATAACTTGTACTAGT+GGG 0.562820 4:-47666660 None:intergenic
ACCTGAAACCGAAGCGACTC+CGG 0.567599 4:-47665064 None:intergenic
TCTGATGCATAACCGCCGAA+TGG 0.569739 4:-47666083 None:intergenic
TTAGTTGCTCGTCCATTCGG+CGG 0.569840 4:+47666071 MsG0480020754.01.T01:CDS
AATTTGGCTGTGGTATCAGT+TGG 0.576596 4:-47664850 None:intergenic
GCAATTCTCCAAGCAGTGAA+AGG 0.578221 4:-47665414 None:intergenic
GAGAATAGTCGTTCTGAGAG+AGG 0.578576 4:+47666593 MsG0480020754.01.T01:CDS
ATCATTGATAGTACTGCGAT+CGG 0.578966 4:-47666212 None:intergenic
AATGACATACAAAACACTGT+TGG 0.582355 4:-47665174 None:intergenic
TTCTCAGCAAACCTAAGACT+TGG 0.583555 4:-47666575 None:intergenic
TCACCAGGAAGCTCCATGCA+TGG 0.586180 4:+47664775 MsG0480020754.01.T01:CDS
AAATGGAAGGTTCTCATGTG+AGG 0.586590 4:-47664934 None:intergenic
CCTTCTTCTGTAAGGCACCA+AGG 0.586854 4:-47665515 None:intergenic
TATGAGTTGATTAGAAGAGC+TGG 0.589543 4:+47665384 MsG0480020754.01.T01:CDS
TTGGTGCTGTAAGCATGATA+AGG 0.592020 4:-47665155 None:intergenic
AAGGCACCAAGGTTACCATC+AGG 0.593630 4:-47665504 None:intergenic
TTAGGCCAAGATTTACCTGA+TGG 0.597509 4:+47665489 MsG0480020754.01.T01:CDS
TACCAACGTCGGATTTCGTG+AGG 0.605986 4:-47665038 None:intergenic
TCAGGTTTAACTGGTGCAGG+TGG 0.608725 4:+47666320 MsG0480020754.01.T01:CDS
TATAACTTGTACTAGTGGGT+AGG 0.614728 4:-47666656 None:intergenic
AATGGAAGGTTCTCATGTGA+GGG 0.615898 4:-47664933 None:intergenic
CTAATCAACTCATACACCAA+AGG 0.617873 4:-47665375 None:intergenic
GCCATTAGTCCCGATCATCC+GGG 0.620270 4:+47665005 MsG0480020754.01.T01:CDS
TGGATCTTCCAAACCCTAGG+TGG 0.623341 4:+47666152 MsG0480020754.01.T01:CDS
TGAAGCAACTGATGACATGA+AGG 0.627231 4:-47664818 None:intergenic
GCTGGTTGGGGTAATATGGG+TGG 0.628336 4:+47665330 MsG0480020754.01.T01:CDS
TGATATCCATGATAAATGGA+AGG 0.629428 4:-47664947 None:intergenic
CTTGGTGCCTTACAGAAGAA+GGG 0.632453 4:+47665516 MsG0480020754.01.T01:CDS
GAGGAAGACTATGGACACTC+TGG 0.635045 4:+47666132 MsG0480020754.01.T01:CDS
GCAAGATTATTCGGCATGCG+AGG 0.636291 4:+47666113 MsG0480020754.01.T01:CDS
TATGCAGAAAACTCCACCTA+GGG 0.637321 4:-47666165 None:intergenic
TGGTAATGCAAATTTGGCTG+TGG 0.639028 4:-47664860 None:intergenic
CTCTGGATCTTCCAAACCCT+AGG 0.639945 4:+47666149 MsG0480020754.01.T01:CDS
TGATAACATGCAACCAACCA+GGG 0.648113 4:-47665446 None:intergenic
ATATGCAGAAAACTCCACCT+AGG 0.648525 4:-47666166 None:intergenic
AAATCCGACGTTGGTAACGC+CGG 0.653244 4:+47665045 MsG0480020754.01.T01:CDS
GTTGGAGCACAAGCAGCATG+TGG 0.659585 4:+47666245 MsG0480020754.01.T01:CDS
CTCAGCAATGACATTGTCAG+TGG 0.659860 4:-47665768 None:intergenic
TGCTAAAGACAAGTTCACAA+AGG 0.663793 4:+47665545 MsG0480020754.01.T01:CDS
TTCTGAGAGAGGAAAGCGTG+TGG 0.674767 4:+47666604 MsG0480020754.01.T01:CDS
AACCTCACGAAATCCGACGT+TGG 0.679989 4:+47665036 MsG0480020754.01.T01:CDS
AGGAAAGCACAACCATAACG+TGG 0.709978 4:-47665135 None:intergenic
CAAAGGCATAATAAGCTGAG+TGG 0.711499 4:-47665358 None:intergenic
GACTCCGGCGTTACCAACGT+CGG 0.726114 4:-47665049 None:intergenic
AGGAACATGCTACCCCACTG+TGG 0.730068 4:-47666470 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATGTTTAATAGTAAAATTAT+TGG + Chr4:47665288-47665307 MsG0480020754.01.T01:CDS 10.0%
!! TCTAATGAATTAAATAAAAC+AGG + Chr4:47665991-47666010 MsG0480020754.01.T01:intron 15.0%
!!! CACAATTTAAAATTATAATC+TGG + Chr4:47665900-47665919 MsG0480020754.01.T01:intron 15.0%
!!! CAGATTATAATTTTAAATTG+TGG - Chr4:47665902-47665921 None:intergenic 15.0%
!! AAAATTATTGGACTTGTAAA+TGG + Chr4:47665300-47665319 MsG0480020754.01.T01:CDS 20.0%
!!! ACAAAGTTTTTAAAAAACCT+AGG + Chr4:47665932-47665951 MsG0480020754.01.T01:intron 20.0%
!!! GATTATGATTTTTTTTCTTC+AGG + Chr4:47665667-47665686 MsG0480020754.01.T01:intron 20.0%
! AAAGATCTTCTTGATATGAA+TGG - Chr4:47666290-47666309 None:intergenic 25.0%
! AAATATCAACTGTGTTAATC+CGG - Chr4:47666357-47666376 None:intergenic 25.0%
! AGAATGATATCCATGATAAA+TGG - Chr4:47664954-47664973 None:intergenic 25.0%
! CTAGTTAGTCACTTAATTTA+AGG + Chr4:47665575-47665594 MsG0480020754.01.T01:intron 25.0%
! GTAGATATATACAAATCTTG+AGG - Chr4:47665843-47665862 None:intergenic 25.0%
! TGAAAAGAGTTTGAAAACTT+TGG - Chr4:47664905-47664924 None:intergenic 25.0%
! TTCATATCAAGAAGATCTTT+AGG + Chr4:47666290-47666309 MsG0480020754.01.T01:CDS 25.0%
!! AGATCTTTAGGAATAATATC+AGG + Chr4:47666302-47666321 MsG0480020754.01.T01:CDS 25.0%
!! AGTTTTCAAACTCTTTTCAA+TGG + Chr4:47664906-47664925 MsG0480020754.01.T01:CDS 25.0%
!!! CTCATTGATTAATTGTTTTG+TGG - Chr4:47665610-47665629 None:intergenic 25.0%
!!! TTTTTTTTCTTCAGGTTTTG+TGG + Chr4:47665675-47665694 MsG0480020754.01.T01:intron 25.0%
AAAATTGTTAAGAGTCTCCT+AGG - Chr4:47665952-47665971 None:intergenic 30.0%
AACACTATTACACTTCTGAA+TGG + Chr4:47666519-47666538 MsG0480020754.01.T01:CDS 30.0%
AATGAAGATGAAGTACAGAA+AGG + Chr4:47666542-47666561 MsG0480020754.01.T01:CDS 30.0%
AATGACATACAAAACACTGT+TGG - Chr4:47665177-47665196 None:intergenic 30.0%
ACATAGTACTCATCCAATAT+TGG - Chr4:47665272-47665291 None:intergenic 30.0%
ATAGCAGTTAGGTTTATGAT+TGG + Chr4:47665219-47665238 MsG0480020754.01.T01:CDS 30.0%
ATGAAGATGAAGTACAGAAA+GGG + Chr4:47666543-47666562 MsG0480020754.01.T01:CDS 30.0%
CATTTGTTTCATGCCAATAT+TGG + Chr4:47665256-47665275 MsG0480020754.01.T01:CDS 30.0%
CTATAACAAATTACAGGACA+TGG + Chr4:47665702-47665721 MsG0480020754.01.T01:CDS 30.0%
GGAATAATATCAGGTTTAAC+TGG + Chr4:47666311-47666330 MsG0480020754.01.T01:CDS 30.0%
GGTATGCTATAACAAATTAC+AGG + Chr4:47665696-47665715 MsG0480020754.01.T01:CDS 30.0%
TGATATCCATGATAAATGGA+AGG - Chr4:47664950-47664969 None:intergenic 30.0%
! ATCAACTGGTAATGCAAATT+TGG - Chr4:47664869-47664888 None:intergenic 30.0%
! ATTTGTTCATTTTCCACAGT+GGG + Chr4:47666457-47666476 MsG0480020754.01.T01:CDS 30.0%
! TCAAAATTTTCAACAGCTTC+AGG + Chr4:47666386-47666405 MsG0480020754.01.T01:CDS 30.0%
! TCATTTGTTGAAAATGCTTC+TGG + Chr4:47665192-47665211 MsG0480020754.01.T01:CDS 30.0%
! TCTTCATTGATCTCTTTTGA+AGG - Chr4:47666500-47666519 None:intergenic 30.0%
!! GTTTATGATTGGTTTCTCTT+TGG + Chr4:47665230-47665249 MsG0480020754.01.T01:CDS 30.0%
!! TTTCAGGTAGTATTTTCTCA+AGG + Chr4:47665079-47665098 MsG0480020754.01.T01:CDS 30.0%
!!! GGTATTTTGGTCTTAACATT+AGG + Chr4:47665471-47665490 MsG0480020754.01.T01:CDS 30.0%
AAAAGATGCAGCAATGATTC+CGG - Chr4:47666039-47666058 None:intergenic 35.0%
AACATTACCCTTCTTCTGTA+AGG - Chr4:47665526-47665545 None:intergenic 35.0%
ACTGCTTTATGGTTACTCTA+TGG + Chr4:47665733-47665752 MsG0480020754.01.T01:CDS 35.0%
CTAATCAACTCATACACCAA+AGG - Chr4:47665378-47665397 None:intergenic 35.0%
CTGCTTTATGGTTACTCTAT+GGG + Chr4:47665734-47665753 MsG0480020754.01.T01:CDS 35.0%
GATGTTGCAGCAAGATTATT+CGG + Chr4:47666104-47666123 MsG0480020754.01.T01:CDS 35.0%
GATTTGTGTTCAGAATCAAC+TGG - Chr4:47664883-47664902 None:intergenic 35.0%
GGAAAATGAACAAATGCAAC+AGG - Chr4:47666452-47666471 None:intergenic 35.0%
TGAGAACCTTCCATTTATCA+TGG + Chr4:47664941-47664960 MsG0480020754.01.T01:CDS 35.0%
TGCTAAAGACAAGTTCACAA+AGG + Chr4:47665545-47665564 MsG0480020754.01.T01:CDS 35.0%
TTAAATTGCAACTGCAGTTG+CGG + Chr4:47665875-47665894 MsG0480020754.01.T01:intron 35.0%
! ATCATTGATAGTACTGCGAT+CGG - Chr4:47666215-47666234 None:intergenic 35.0%
! ATTTTCTCAAGGCTTGCAAT+GGG + Chr4:47665090-47665109 MsG0480020754.01.T01:CDS 35.0%
! CATTTGTTCATTTTCCACAG+TGG + Chr4:47666456-47666475 MsG0480020754.01.T01:CDS 35.0%
! CTTCTGGTTATATAGCAGTT+AGG + Chr4:47665208-47665227 MsG0480020754.01.T01:CDS 35.0%
! GCATGTTATCATGGGTATTT+TGG + Chr4:47665458-47665477 MsG0480020754.01.T01:CDS 35.0%
! TATTTTCTCAAGGCTTGCAA+TGG + Chr4:47665089-47665108 MsG0480020754.01.T01:CDS 35.0%
! TGGATTTTTGCACTGCTTTA+TGG + Chr4:47665722-47665741 MsG0480020754.01.T01:CDS 35.0%
! TTGCTGAGTATTTCTATGAC+AGG + Chr4:47665783-47665802 MsG0480020754.01.T01:CDS 35.0%
! TTTGTTCATTTTCCACAGTG+GGG + Chr4:47666458-47666477 MsG0480020754.01.T01:CDS 35.0%
!! TATGAGTTGATTAGAAGAGC+TGG + Chr4:47665384-47665403 MsG0480020754.01.T01:CDS 35.0%
!! TCATTGATCTCTTTTGAAGG+TGG - Chr4:47666497-47666516 None:intergenic 35.0%
!!! AGAATTGCCTTTTTTATCCC+TGG + Chr4:47665429-47665448 MsG0480020754.01.T01:CDS 35.0%
AAATGGAAGGTTCTCATGTG+AGG - Chr4:47664937-47664956 None:intergenic 40.0%
AACCATAACGTGGACCTAAT+AGG - Chr4:47665128-47665147 None:intergenic 40.0%
AACTTAGTTGCTCGTCCATT+CGG + Chr4:47666068-47666087 MsG0480020754.01.T01:CDS 40.0%
AATGGAAGGTTCTCATGTGA+GGG - Chr4:47664936-47664955 None:intergenic 40.0%
AATTTGGCTGTGGTATCAGT+TGG - Chr4:47664853-47664872 None:intergenic 40.0%
ATATCAGGTTTAACTGGTGC+AGG + Chr4:47666317-47666336 MsG0480020754.01.T01:CDS 40.0%
ATATGCAGAAAACTCCACCT+AGG - Chr4:47666169-47666188 None:intergenic 40.0%
ATGATAACATGCAACCAACC+AGG - Chr4:47665450-47665469 None:intergenic 40.0%
CAACCAACCAGGGATAAAAA+AGG - Chr4:47665439-47665458 None:intergenic 40.0%
CACTCAGCTTATTATGCCTT+TGG + Chr4:47665359-47665378 MsG0480020754.01.T01:CDS 40.0%
GATTTACCTGATGGTAACCT+TGG + Chr4:47665498-47665517 MsG0480020754.01.T01:CDS 40.0%
GGTGCAATTTGTGACCTATT+AGG + Chr4:47665111-47665130 MsG0480020754.01.T01:CDS 40.0%
GGTTACCATCAGGTAAATCT+TGG - Chr4:47665497-47665516 None:intergenic 40.0%
TATGCAGAAAACTCCACCTA+GGG - Chr4:47666168-47666187 None:intergenic 40.0%
TCAATGATCCTCTTCTCAGT+TGG + Chr4:47666227-47666246 MsG0480020754.01.T01:CDS 40.0%
TGAAGCAACTGATGACATGA+AGG - Chr4:47664821-47664840 None:intergenic 40.0%
TGATAACATGCAACCAACCA+GGG - Chr4:47665449-47665468 None:intergenic 40.0%
TTAGGCCAAGATTTACCTGA+TGG + Chr4:47665489-47665508 MsG0480020754.01.T01:CDS 40.0%
TTCTCAGCAAACCTAAGACT+TGG - Chr4:47666578-47666597 None:intergenic 40.0%
! CAAAGGCATAATAAGCTGAG+TGG - Chr4:47665361-47665380 None:intergenic 40.0%
! GGAATCATTGCTGCATCTTT+TGG + Chr4:47666038-47666057 MsG0480020754.01.T01:CDS 40.0%
! GGAGTTTTCTGCATATGGTT+GGG + Chr4:47666173-47666192 MsG0480020754.01.T01:CDS 40.0%
! GGTTGGTTGCATGTTATCAT+GGG + Chr4:47665450-47665469 MsG0480020754.01.T01:CDS 40.0%
! TAGGTGGAGTTTTCTGCATA+TGG + Chr4:47666168-47666187 MsG0480020754.01.T01:CDS 40.0%
! TAGTGGGTAGGAGTTGTATT+TGG - Chr4:47666647-47666666 None:intergenic 40.0%
! TGGAGTTTTCTGCATATGGT+TGG + Chr4:47666172-47666191 MsG0480020754.01.T01:CDS 40.0%
! TGGTAATGCAAATTTGGCTG+TGG - Chr4:47664863-47664882 None:intergenic 40.0%
! TGGTTGGTTGCATGTTATCA+TGG + Chr4:47665449-47665468 MsG0480020754.01.T01:CDS 40.0%
!! CATTGCTGCATCTTTTGGAA+TGG + Chr4:47666043-47666062 MsG0480020754.01.T01:CDS 40.0%
!! TGATCTCTTTTGAAGGTGGA+AGG - Chr4:47666493-47666512 None:intergenic 40.0%
!! TTGGTGCTGTAAGCATGATA+AGG - Chr4:47665158-47665177 None:intergenic 40.0%
!!! TTGCCTTTTTTATCCCTGGT+TGG + Chr4:47665433-47665452 MsG0480020754.01.T01:CDS 40.0%
AACCTAAAGCTACACACAGC+CGG + Chr4:47666017-47666036 MsG0480020754.01.T01:CDS 45.0%
AGAAAACTCCACCTAGGGTT+TGG - Chr4:47666163-47666182 None:intergenic 45.0%
AGCTTCAGGTCTTTCATGGA+TGG + Chr4:47666400-47666419 MsG0480020754.01.T01:CDS 45.0%
CAACAGCTTCAGGTCTTTCA+TGG + Chr4:47666396-47666415 MsG0480020754.01.T01:CDS 45.0%
CTCAGCAATGACATTGTCAG+TGG - Chr4:47665771-47665790 None:intergenic 45.0%
CTTGTAAATGGTACTGCTGC+TGG + Chr4:47665312-47665331 MsG0480020754.01.T01:CDS 45.0%
GACCTATTAGGTCCACGTTA+TGG + Chr4:47665123-47665142 MsG0480020754.01.T01:CDS 45.0%
GCAATTCTCCAAGCAGTGAA+AGG - Chr4:47665417-47665436 None:intergenic 45.0%
GCTTCAGGTCTTTCATGGAT+GGG + Chr4:47666401-47666420 MsG0480020754.01.T01:CDS 45.0%
GTCATCAGTTGCTTCACCAA+TGG + Chr4:47664825-47664844 MsG0480020754.01.T01:CDS 45.0%
GTGGTATCAGTTGGAACCAT+TGG - Chr4:47664844-47664863 None:intergenic 45.0%
TAAATGGTACTGCTGCTGGT+TGG + Chr4:47665316-47665335 MsG0480020754.01.T01:CDS 45.0%
TGGATGGGTGCAATGATTGT+TGG + Chr4:47666416-47666435 MsG0480020754.01.T01:CDS 45.0%
TGGGTAGGAGTTGTATTTGG+AGG - Chr4:47666644-47666663 None:intergenic 45.0%
TTAAGGTTGTCCCGGATGAT+CGG - Chr4:47665018-47665037 None:intergenic 45.0%
! AAATGGTACTGCTGCTGGTT+GGG + Chr4:47665317-47665336 MsG0480020754.01.T01:CDS 45.0%
! AGGAAAGCACAACCATAACG+TGG - Chr4:47665138-47665157 None:intergenic 45.0%
!! CTTGGTGCCTTACAGAAGAA+GGG + Chr4:47665516-47665535 MsG0480020754.01.T01:CDS 45.0%
!! GAGAATAGTCGTTCTGAGAG+AGG + Chr4:47666593-47666612 MsG0480020754.01.T01:CDS 45.0%
AACCTCACGAAATCCGACGT+TGG + Chr4:47665036-47665055 MsG0480020754.01.T01:CDS 50.0%
ACTGGTGCAGGTGGAAACTT+TGG + Chr4:47666329-47666348 MsG0480020754.01.T01:CDS 50.0%
CGTCGGATTTCGTGAGGTTA+AGG - Chr4:47665035-47665054 None:intergenic 50.0%
CTCTGGATCTTCCAAACCCT+AGG + Chr4:47666149-47666168 MsG0480020754.01.T01:CDS 50.0%
CTTGTGCTCCAACTGAGAAG+AGG - Chr4:47666238-47666257 None:intergenic 50.0%
GAGGAAGACTATGGACACTC+TGG + Chr4:47666132-47666151 MsG0480020754.01.T01:CDS 50.0%
GCAAGATTATTCGGCATGCG+AGG + Chr4:47666113-47666132 MsG0480020754.01.T01:CDS 50.0%
GCAGCATGTGGTGCAACATT+TGG + Chr4:47666257-47666276 MsG0480020754.01.T01:CDS 50.0%
GCTGATATTGAGGGTTCACC+AGG + Chr4:47664760-47664779 MsG0480020754.01.T01:CDS 50.0%
GGTTGCATCAGCCAAGTCTT+AGG + Chr4:47666564-47666583 MsG0480020754.01.T01:CDS 50.0%
GTTGGGGTAATATGGGTGGT+GGG + Chr4:47665334-47665353 MsG0480020754.01.T01:CDS 50.0%
TAAGGTTGTCCCGGATGATC+GGG - Chr4:47665017-47665036 None:intergenic 50.0%
TACCAACGTCGGATTTCGTG+AGG - Chr4:47665041-47665060 None:intergenic 50.0%
TCAGGTTTAACTGGTGCAGG+TGG + Chr4:47666320-47666339 MsG0480020754.01.T01:CDS 50.0%
TCGTGAGGTTAAGGTTGTCC+CGG - Chr4:47665026-47665045 None:intergenic 50.0%
TCTGATGCATAACCGCCGAA+TGG - Chr4:47666086-47666105 None:intergenic 50.0%
TCTTCCAGTCACTCCATGCA+TGG - Chr4:47664791-47664810 None:intergenic 50.0%
TGGATCTTCCAAACCCTAGG+TGG + Chr4:47666152-47666171 MsG0480020754.01.T01:CDS 50.0%
TTAGTTGCTCGTCCATTCGG+CGG + Chr4:47666071-47666090 MsG0480020754.01.T01:CDS 50.0%
TTCCGGCTGTGTGTAGCTTT+AGG - Chr4:47666022-47666041 None:intergenic 50.0%
TTGGGGTAATATGGGTGGTG+GGG + Chr4:47665335-47665354 MsG0480020754.01.T01:CDS 50.0%
! AAGGCACCAAGGTTACCATC+AGG - Chr4:47665507-47665526 None:intergenic 50.0%
! AATGGTACTGCTGCTGGTTG+GGG + Chr4:47665318-47665337 MsG0480020754.01.T01:CDS 50.0%
! CCTTCTTCTGTAAGGCACCA+AGG - Chr4:47665518-47665537 None:intergenic 50.0%
! GCAGGTGGAAACTTTGGTTC+CGG + Chr4:47666335-47666354 MsG0480020754.01.T01:CDS 50.0%
! GCTGCTGGTTGGGGTAATAT+GGG + Chr4:47665327-47665346 MsG0480020754.01.T01:CDS 50.0%
! GTGCTACTCCTTTCACTGCT+TGG + Chr4:47665406-47665425 MsG0480020754.01.T01:CDS 50.0%
! TGCTGCTGGTTGGGGTAATA+TGG + Chr4:47665326-47665345 MsG0480020754.01.T01:CDS 50.0%
! TTCTGAGAGAGGAAAGCGTG+TGG + Chr4:47666604-47666623 MsG0480020754.01.T01:CDS 50.0%
!! AAATCCGACGTTGGTAACGC+CGG + Chr4:47665045-47665064 MsG0480020754.01.T01:CDS 50.0%
!! CCTTGGTGCCTTACAGAAGA+AGG + Chr4:47665515-47665534 MsG0480020754.01.T01:CDS 50.0%
ACCTGAAACCGAAGCGACTC+CGG - Chr4:47665067-47665086 None:intergenic 55.0%
ACTCCATGCATGGAGCTTCC+TGG - Chr4:47664781-47664800 None:intergenic 55.0%
AGCTCCATGCATGGAGTGAC+TGG + Chr4:47664784-47664803 MsG0480020754.01.T01:CDS 55.0%
AGGAACATGCTACCCCACTG+TGG - Chr4:47666473-47666492 None:intergenic 55.0%
CGCCATTAGTCCCGATCATC+CGG + Chr4:47665004-47665023 MsG0480020754.01.T01:CDS 55.0%
GCCATTAGTCCCGATCATCC+GGG + Chr4:47665005-47665024 MsG0480020754.01.T01:CDS 55.0%
GCTGGTTGGGGTAATATGGG+TGG + Chr4:47665330-47665349 MsG0480020754.01.T01:CDS 55.0%
GGTTGGGGTAATATGGGTGG+TGG + Chr4:47665333-47665352 MsG0480020754.01.T01:CDS 55.0%
GTTGGAGCACAAGCAGCATG+TGG + Chr4:47666245-47666264 MsG0480020754.01.T01:CDS 55.0%
TCACCAGGAAGCTCCATGCA+TGG + Chr4:47664775-47664794 MsG0480020754.01.T01:CDS 55.0%
TCCCGGATGATCGGGACTAA+TGG - Chr4:47665009-47665028 None:intergenic 55.0%
TCGGCATGCGAGGAAGACTA+TGG + Chr4:47666123-47666142 MsG0480020754.01.T01:CDS 55.0%
GACTCCGGCGTTACCAACGT+CGG - Chr4:47665052-47665071 None:intergenic 60.0%
! TGGTAACGCCGGAGTCGCTT+CGG + Chr4:47665056-47665075 MsG0480020754.01.T01:CDS 60.0%
GCCGGAGTCGCTTCGGTTTC+AGG + Chr4:47665063-47665082 MsG0480020754.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr4 gene 47664757 47666667 47664757 ID=MsG0480020754.01;Name=MsG0480020754.01
Chr4 mRNA 47664757 47666667 47664757 ID=MsG0480020754.01.T01;Parent=MsG0480020754.01;Name=MsG0480020754.01.T01;_AED=0.41;_eAED=0.41;_QI=0|0|0|1|1|1|3|0|526
Chr4 exon 47664757 47665566 47664757 ID=MsG0480020754.01.T01:exon:8275;Parent=MsG0480020754.01.T01
Chr4 exon 47665689 47665804 47665689 ID=MsG0480020754.01.T01:exon:8276;Parent=MsG0480020754.01.T01
Chr4 exon 47666013 47666667 47666013 ID=MsG0480020754.01.T01:exon:8277;Parent=MsG0480020754.01.T01
Chr4 CDS 47664757 47665566 47664757 ID=MsG0480020754.01.T01:cds;Parent=MsG0480020754.01.T01
Chr4 CDS 47665689 47665804 47665689 ID=MsG0480020754.01.T01:cds;Parent=MsG0480020754.01.T01
Chr4 CDS 47666013 47666667 47666013 ID=MsG0480020754.01.T01:cds;Parent=MsG0480020754.01.T01
Gene Sequence

>MsG0480020754.01.T01

ATGGCTGATATTGAGGGTTCACCAGGAAGCTCCATGCATGGAGTGACTGGAAGAGAACAAACCTTCATGTCATCAGTTGCTTCACCAATGGTTCCAACTGATACCACAGCCAAATTTGCATTACCAGTTGATTCTGAACACAAATCCAAAGTTTTCAAACTCTTTTCAATGGCTAACCCTCACATGAGAACCTTCCATTTATCATGGATATCATTCTTCACATGTTTCGTCTCGACATTCGCAGCAGCGCCATTAGTCCCGATCATCCGGGACAACCTTAACCTCACGAAATCCGACGTTGGTAACGCCGGAGTCGCTTCGGTTTCAGGTAGTATTTTCTCAAGGCTTGCAATGGGTGCAATTTGTGACCTATTAGGTCCACGTTATGGTTGTGCTTTCCTTATCATGCTTACAGCACCAACAGTGTTTTGTATGTCATTTGTTGAAAATGCTTCTGGTTATATAGCAGTTAGGTTTATGATTGGTTTCTCTTTGGCAACATTTGTTTCATGCCAATATTGGATGAGTACTATGTTTAATAGTAAAATTATTGGACTTGTAAATGGTACTGCTGCTGGTTGGGGTAATATGGGTGGTGGGGCCACTCAGCTTATTATGCCTTTGGTGTATGAGTTGATTAGAAGAGCTGGTGCTACTCCTTTCACTGCTTGGAGAATTGCCTTTTTTATCCCTGGTTGGTTGCATGTTATCATGGGTATTTTGGTCTTAACATTAGGCCAAGATTTACCTGATGGTAACCTTGGTGCCTTACAGAAGAAGGGTAATGTTGCTAAAGACAAGTTCACAAAGGTTTTGTGGTATGCTATAACAAATTACAGGACATGGATTTTTGCACTGCTTTATGGTTACTCTATGGGAGTTGAATTGACCACTGACAATGTCATTGCTGAGTATTTCTATGACAGGTTTAACCTAAAGCTACACACAGCCGGAATCATTGCTGCATCTTTTGGAATGGCAAACTTAGTTGCTCGTCCATTCGGCGGTTATGCATCAGATGTTGCAGCAAGATTATTCGGCATGCGAGGAAGACTATGGACACTCTGGATCTTCCAAACCCTAGGTGGAGTTTTCTGCATATGGTTGGGACGTGCGAATACACTTCCGATCGCAGTACTATCAATGATCCTCTTCTCAGTTGGAGCACAAGCAGCATGTGGTGCAACATTTGGAATCATTCCATTCATATCAAGAAGATCTTTAGGAATAATATCAGGTTTAACTGGTGCAGGTGGAAACTTTGGTTCCGGATTAACACAGTTGATATTTTTTTCAAGCTCAAAATTTTCAACAGCTTCAGGTCTTTCATGGATGGGTGCAATGATTGTTGGTTGTACACTTCCTGTTGCATTTGTTCATTTTCCACAGTGGGGTAGCATGTTCCTTCCACCTTCAAAAGAGATCAATGAAGAACACTATTACACTTCTGAATGGAATGAAGATGAAGTACAGAAAGGGTTGCATCAGCCAAGTCTTAGGTTTGCTGAGAATAGTCGTTCTGAGAGAGGAAAGCGTGTGGCTTCTGCAGCAACACCTCCAAATACAACTCCTACCCACTAG

Protein sequence

>MsG0480020754.01.T01

MADIEGSPGSSMHGVTGREQTFMSSVASPMVPTDTTAKFALPVDSEHKSKVFKLFSMANPHMRTFHLSWISFFTCFVSTFAAAPLVPIIRDNLNLTKSDVGNAGVASVSGSIFSRLAMGAICDLLGPRYGCAFLIMLTAPTVFCMSFVENASGYIAVRFMIGFSLATFVSCQYWMSTMFNSKIIGLVNGTAAGWGNMGGGATQLIMPLVYELIRRAGATPFTAWRIAFFIPGWLHVIMGILVLTLGQDLPDGNLGALQKKGNVAKDKFTKVLWYAITNYRTWIFALLYGYSMGVELTTDNVIAEYFYDRFNLKLHTAGIIAASFGMANLVARPFGGYASDVAARLFGMRGRLWTLWIFQTLGGVFCIWLGRANTLPIAVLSMILFSVGAQAACGATFGIIPFISRRSLGIISGLTGAGGNFGSGLTQLIFFSSSKFSTASGLSWMGAMIVGCTLPVAFVHFPQWGSMFLPPSKEINEEHYYTSEWNEDEVQKGLHQPSLRFAENSRSERGKRVASAATPPNTTPTH*