AlfalfaGEDB | MsG0280011443.01

M. sativa cultivar ZhongmuNo.1 / MsG0280011443.01

KEGG: -
GO: -
PFAM: PF07899

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280011443.01.T01	AES68135.1	71.353	377	62	7	54	405	18	373	8.52E-160	465

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280011443.01.T01	G7IUV6	71.353	377	62	7	54	405	18	373	4.07e-160	465

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048969.01	MsG0280011443.01	0.813688	2.255569e-51	1.483013e-48
MsG0180004277.01	MsG0280011443.01	0.821279	4.393864e-53	3.558696e-50
MsG0180004865.01	MsG0280011443.01	0.800016	1.756370e-48	8.090798e-46
MsG0180005283.01	MsG0280011443.01	0.833582	4.910436e-56	5.679230e-53
MsG0180005758.01	MsG0280011443.01	-0.825867	3.708336e-54	3.421893e-51
MsG0280006706.01	MsG0280011443.01	0.817691	2.891966e-52	2.120731e-49
MsG0280007102.01	MsG0280011443.01	0.804575	2.022372e-49	1.046438e-46
MsG0280007754.01	MsG0280011443.01	0.851331	9.515866e-61	1.919640e-57
MsG0280007755.01	MsG0280011443.01	0.823663	1.226849e-53	1.063185e-50
MsG0280010888.01	MsG0280011443.01	-0.826066	3.325848e-54	3.086116e-51

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280011443.01.T01	MTR_2g103620	71.353	377	62	7	54	405	18	373	1.03e-163	465
MsG0280011443.01.T01	MTR_2g103640	67.663	368	57	10	53	380	8	353	7.46e-145	416
MsG0280011443.01.T01	MTR_5g038810	41.772	474	127	9	54	405	31	477	1.07e-92	293
MsG0280011443.01.T01	MTR_2g091015	53.205	312	88	7	148	405	556	863	3.05e-77	257
MsG0280011443.01.T01	MTR_2g091015	29.344	259	92	6	97	264	106	364	9.85e-17	82.8
MsG0280011443.01.T01	MTR_2g091030	41.036	502	144	8	53	405	85	583	2.47e-75	245
MsG0280011443.01.T01	MTR_2g091335	54.483	290	97	5	148	405	313	599	2.56e-68	227
MsG0280011443.01.T01	MTR_2g091335	33.455	275	87	10	67	257	80	342	1.58e-21	97.4
MsG0280011443.01.T01	MTR_6g045183	50.903	277	95	5	171	409	390	663	8.15e-68	229
MsG0280011443.01.T01	MTR_6g045183	36.810	163	87	4	61	223	100	246	1.41e-14	76.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280011443.01.T01	AT5G27220	29.412	306	189	11	108	405	512	798	2.32e-13	72.8
MsG0280011443.01.T01	AT5G27220	29.412	306	189	11	108	405	512	798	2.32e-13	72.8
MsG0280011443.01.T01	AT5G27220	29.412	306	189	11	108	405	512	798	2.66e-13	72.4
MsG0280011443.01.T01	AT5G27220	29.412	306	189	11	108	405	512	798	2.66e-13	72.4

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Find 68 sgRNAs with CRISPR-Local

Find 170 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATACTGAAAATTCTTTGG+AGG	0.482682	2:-84081749	MsG0280011443.01.T01:CDS
AAATAGAAGAGTGGCGATTG+TGG	0.559419	2:-84082865	MsG0280011443.01.T01:CDS
AAATCAGCAACATTATTCTG+TGG	0.667333	2:+84084223	None:intergenic
AAATCATTTGAGGAATGCAA+CGG	0.576495	2:-84082896	MsG0280011443.01.T01:CDS
AAATTATTCAGCTTTGACTC+AGG	0.479176	2:+84082453	None:intergenic
AATCATTTGAGGAATGCAAC+GGG	0.489095	2:-84082895	MsG0280011443.01.T01:CDS
ACAGCTTTGTCTCCCTTCTT+AGG	0.285668	2:+84081895	None:intergenic
ACAGGCAAATGCAACCAACA+TGG	0.621822	2:-84084266	MsG0280011443.01.T01:CDS
ACATTTCGCGAGCCGACAAA+AGG	0.460184	2:-84082677	MsG0280011443.01.T01:CDS
ACGAACTGGACAGCCAAGTG+GGG	0.676348	2:-84083268	MsG0280011443.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATCAGCAACATTATTCTG+TGG	+	Chr2:84081639-84081658	None:intergenic	30.0%
AAATCATTTGAGGAATGCAA+CGG	-	Chr2:84082963-84082982	MsG0280011443.01.T01:CDS	30.0%
AACCACTGTTTCAATGTTAA+AGG	-	Chr2:84082150-84082169	MsG0280011443.01.T01:intron	30.0%
AATTTACCGAAATAGGTCTA+GGG	-	Chr2:84082092-84082111	MsG0280011443.01.T01:intron	30.0%
ATAAAAACCCTGTTATATGC+TGG	+	Chr2:84082295-84082314	None:intergenic	30.0%
ATAAGAGAAAAATCAAGTCG+TGG	-	Chr2:84082127-84082146	MsG0280011443.01.T01:intron	30.0%
ATATGCAGATACATCTAACA+TGG	-	Chr2:84083816-84083835	MsG0280011443.01.T01:intron	30.0%
ATCAAAAAGGGTGAATTTGA+TGG	-	Chr2:84083129-84083148	MsG0280011443.01.T01:intron	30.0%
ATTATGATAAACGGTACAAC+AGG	+	Chr2:84082539-84082558	None:intergenic	30.0%
CAAAAATTGAAGGTGACAAT+AGG	+	Chr2:84083750-84083769	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	84081585	84084296	84081585	ID=MsG0280011443.01;Name=MsG0280011443.01
Chr2	mRNA	84081585	84084296	84081585	ID=MsG0280011443.01.T01;Parent=MsG0280011443.01;Name=MsG0280011443.01.T01;_AED=0.49;_eAED=0.55;_QI=0\|0\|0\|1\|1\|0.8\|5\|0\|412
Chr2	exon	84084208	84084296	84084208	ID=MsG0280011443.01.T01:exon:3269;Parent=MsG0280011443.01.T01
Chr2	exon	84083240	84083309	84083240	ID=MsG0280011443.01.T01:exon:3268;Parent=MsG0280011443.01.T01
Chr2	exon	84082808	84083098	84082808	ID=MsG0280011443.01.T01:exon:3267;Parent=MsG0280011443.01.T01
Chr2	exon	84082391	84082706	84082391	ID=MsG0280011443.01.T01:exon:3266;Parent=MsG0280011443.01.T01
Chr2	exon	84081585	84082057	84081585	ID=MsG0280011443.01.T01:exon:3265;Parent=MsG0280011443.01.T01
Chr2	CDS	84084208	84084296	84084208	ID=MsG0280011443.01.T01:cds;Parent=MsG0280011443.01.T01
Chr2	CDS	84083240	84083309	84083240	ID=MsG0280011443.01.T01:cds;Parent=MsG0280011443.01.T01
Chr2	CDS	84082808	84083098	84082808	ID=MsG0280011443.01.T01:cds;Parent=MsG0280011443.01.T01
Chr2	CDS	84082391	84082706	84082391	ID=MsG0280011443.01.T01:cds;Parent=MsG0280011443.01.T01
Chr2	CDS	84081585	84082057	84081585	ID=MsG0280011443.01.T01:cds;Parent=MsG0280011443.01.T01

Gene Sequence

>MsG0280011443.01.T01

ATGAGCCAACAGGCAAATGCAACCAACATGGAACACACTCAGATGCTTGGGCCACAGAATAATGTTGCTGATTTGCAGCAATCACATAGATTATTTGGATTTAACAGCACGAACTGGACAGCCAAGTGGGGTGATTGGAAGGAAGAAGTAGATCAAAAGCAACAATTCCTTGGAAAGCAACATTCCTTGGAATTTTCTGTTAAGAAATCAAAGGTGTCACTATACGATGATCGTGACAAAGATGAAGACGATATTCCTTCGTTGAATATGAATAAAAGGCCAGGCAAATCAGCTGATAATTCATTTTCCTCGCTGAGGAAAGAACTTGCATTGTTGAAAAAATCATTTGAGGAATGCAACGGGAATCAACAAATAGAAGAGTGGCGATTGTGGTCCATAAAGAGAAATATTGAGAAGTGCTGCAAAGAGCTAGAAAATAAGGAGACCCAAAAAAGACACATTTCGCGAGCCGACAAAAGGAATTTGAATCAAAAGAAAGGATTTGAAAGAAGAGTGAAGGAGTTCCAGTCAAAAGAGGAGGAATTTAAAGGTCGAGTGAAAGTGTTTGAAGCAAAGGAAGAGGAATTCGAAGGAAAAATGCAGCAATTTGAAAACCAAGCTGAGGACAATCTCAAAGCACTCCAGTTAAAAGAGAATCAGATTGAAGTACAAATCAAGGATCCTGAGTCAAAGCTGAATAATTTTGGTGGACAACTAAAGGAGCTTGAGTTGACAGAGAAACAATACGATGAAGAAAAAGAATTTGATACATCTAACATGGATGATCAATTCAGTATCACCATTGATGGAACAAGTGAGGAATTTGGCATTCTAGATAATTTGCGAAAATCATCAGATCCAGCAAAACTTGTTTTGGATATAATACTAAACCCCACGATTCCACTGCCTAAGAAGGGAGACAAAGCTGTGATTATTGATGAAAGCCGCATCTATCTGCTAGAAAAACTGATGATAATCTCACCAGATATTAAATCTTGTGTAAGAGATGAAGCTTTGAAGCTAGCACGTGAATTGAAAGCTAACATGAAAGAAAATACTGAAAATTCTTTGGAGGTTCTCGGATTTCTGATGATTTTGTCGATTTATGGATTGCTTACTTACTTTGATGAAGATGAAGTCTTCAAGCTTTTTGCTTCTGTTGCGTCTGTTGCTGAATACAAGATAGCTGTAAAGCTGTTTAGGACCCTGGGTTTGTACATAAAGTCTCTGGTATGTTGA

Protein sequence

>MsG0280011443.01.T01

MSQQANATNMEHTQMLGPQNNVADLQQSHRLFGFNSTNWTAKWGDWKEEVDQKQQFLGKQHSLEFSVKKSKVSLYDDRDKDEDDIPSLNMNKRPGKSADNSFSSLRKELALLKKSFEECNGNQQIEEWRLWSIKRNIEKCCKELENKETQKRHISRADKRNLNQKKGFERRVKEFQSKEEEFKGRVKVFEAKEEEFEGKMQQFENQAEDNLKALQLKENQIEVQIKDPESKLNNFGGQLKELELTEKQYDEEKEFDTSNMDDQFSITIDGTSEEFGILDNLRKSSDPAKLVLDIILNPTIPLPKKGDKAVIIDESRIYLLEKLMIISPDIKSCVRDEALKLARELKANMKENTENSLEVLGFLMILSIYGLLTYFDEDEVFKLFASVASVAEYKIAVKLFRTLGLYIKSLVC*