Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280010888.01.T03 | XP_003597194.1 | 100 | 48 | 0 | 0 | 1 | 48 | 60 | 107 | 1.03E-26 | 102 |
| MsG0280010888.01.T02 | XP_004487131.1 | 81.818 | 44 | 6 | 1 | 1 | 44 | 1 | 42 | 1.56E-11 | 64.7 |
| MsG0280010888.01.T01 | XP_003597194.1 | 100 | 63 | 0 | 0 | 20 | 82 | 45 | 107 | 3.29E-37 | 130 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280010888.01.T01 | P38389 | 74.419 | 43 | 11 | 0 | 35 | 77 | 40 | 82 | 1.11E-16 | 70.5 |
| MsG0280010888.01.T03 | P38389 | 77.5 | 40 | 9 | 0 | 1 | 40 | 40 | 79 | 3.27E-16 | 67.8 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280010888.01.T01 | Q2HSW3 | 100.000 | 63 | 0 | 0 | 20 | 82 | 45 | 107 | 1.57e-37 | 130 |
| MsG0280010888.01.T02 | A0A1S2XEQ0 | 81.818 | 44 | 6 | 1 | 1 | 44 | 1 | 42 | 7.43e-12 | 64.7 |
| MsG0280010888.01.T03 | Q2HSW3 | 100.000 | 48 | 0 | 0 | 1 | 48 | 60 | 107 | 4.92e-27 | 102 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048969.01 | MsG0280010888.01 | -0.810237 | 1.273782e-50 | 7.637539e-48 |
| MsG0180000489.01 | MsG0280010888.01 | -0.812422 | 4.272777e-51 | 2.715736e-48 |
| MsG0180000490.01 | MsG0280010888.01 | -0.849245 | 3.660662e-60 | 6.897789e-57 |
| MsG0180000491.01 | MsG0280010888.01 | -0.842379 | 2.680286e-58 | 4.056678e-55 |
| MsG0180001459.01 | MsG0280010888.01 | -0.804018 | 2.641728e-49 | 1.347499e-46 |
| MsG0180001907.01 | MsG0280010888.01 | -0.801266 | 9.765133e-49 | 4.643288e-46 |
| MsG0180002891.01 | MsG0280010888.01 | -0.810922 | 9.058776e-51 | 5.531896e-48 |
| MsG0180003155.01 | MsG0280010888.01 | -0.861626 | 8.989163e-64 | 2.559443e-60 |
| MsG0180003258.01 | MsG0280010888.01 | 0.813568 | 2.396974e-51 | 1.570841e-48 |
| MsG0180004064.01 | MsG0280010888.01 | 0.811176 | 7.980534e-51 | 4.905892e-48 |
| MsG0180004277.01 | MsG0280010888.01 | -0.804714 | 1.892281e-49 | 9.826447e-47 |
| MsG0180004865.01 | MsG0280010888.01 | -0.803258 | 3.798993e-49 | 1.900236e-46 |
| MsG0180004988.01 | MsG0280010888.01 | -0.815573 | 8.628770e-52 | 5.971137e-49 |
| MsG0180005283.01 | MsG0280010888.01 | -0.833496 | 5.158197e-56 | 5.950572e-53 |
| MsG0180005416.01 | MsG0280010888.01 | -0.809260 | 2.065768e-50 | 1.207149e-47 |
| MsG0180005561.01 | MsG0280010888.01 | -0.825420 | 4.732737e-54 | 4.311495e-51 |
| MsG0180005613.01 | MsG0280010888.01 | -0.831043 | 2.087970e-55 | 2.239330e-52 |
| MsG0180005758.01 | MsG0280010888.01 | 0.816909 | 4.336610e-52 | 3.112713e-49 |
| MsG0180006239.01 | MsG0280010888.01 | -0.809409 | 1.919572e-50 | 1.126211e-47 |
| MsG0280006400.01 | MsG0280010888.01 | -0.850527 | 1.602825e-60 | 3.148650e-57 |
| MsG0280010803.01 | MsG0280010888.01 | -0.814286 | 1.664944e-51 | 1.112553e-48 |
| MsG0280010888.01 | MsG0280010998.01 | -0.802057 | 6.718852e-49 | 3.259495e-46 |
| MsG0280010888.01 | MsG0280011110.01 | 0.830334 | 3.114608e-55 | 3.271656e-52 |
| MsG0280010888.01 | MsG0280011222.01 | -0.805882 | 1.077276e-49 | 5.764815e-47 |
| MsG0280010888.01 | MsG0280011309.01 | -0.848874 | 4.639583e-60 | 8.636303e-57 |
| MsG0280010888.01 | MsG0280011372.01 | -0.839662 | 1.385469e-57 | 1.926378e-54 |
| MsG0280010888.01 | MsG0280011443.01 | -0.826066 | 3.325848e-54 | 3.086116e-51 |
| MsG0280010888.01 | MsG0380011662.01 | -0.840529 | 8.232292e-58 | 1.175958e-54 |
| MsG0280010888.01 | MsG0380012251.01 | -0.827061 | 1.926112e-54 | 1.839100e-51 |
| MsG0280010888.01 | MsG0380013373.01 | -0.808092 | 3.671167e-50 | 2.080044e-47 |
| MsG0280010888.01 | MsG0380014411.01 | -0.801612 | 8.292946e-49 | 3.977742e-46 |
| MsG0280010888.01 | MsG0380014728.01 | -0.800047 | 1.730681e-48 | 7.978925e-46 |
| MsG0280010888.01 | MsG0380014794.01 | -0.827041 | 1.947575e-54 | 1.858449e-51 |
| MsG0280010888.01 | MsG0380015349.01 | 0.803560 | 3.288795e-49 | 1.657988e-46 |
| MsG0280010888.01 | MsG0380015501.01 | -0.839525 | 1.504148e-57 | 2.082604e-54 |
| MsG0280010888.01 | MsG0380015628.01 | -0.809512 | 1.824047e-50 | 1.073048e-47 |
| MsG0280010888.01 | MsG0380016151.01 | -0.819843 | 9.388002e-53 | 7.306577e-50 |
| MsG0280010888.01 | MsG0380017780.01 | 0.841744 | 3.946276e-58 | 5.853523e-55 |
| MsG0280010888.01 | MsG0480018100.01 | -0.823883 | 1.089932e-53 | 9.503872e-51 |
| MsG0280010888.01 | MsG0480018323.01 | -0.819027 | 1.440419e-52 | 1.095991e-49 |
| MsG0280010888.01 | MsG0480018658.01 | -0.802632 | 5.116472e-49 | 2.518732e-46 |
| MsG0280010888.01 | MsG0480018844.01 | -0.810094 | 1.367359e-50 | 8.168152e-48 |
| MsG0280010888.01 | MsG0480018997.01 | -0.823457 | 1.371090e-53 | 1.181135e-50 |
| MsG0280010888.01 | MsG0480019604.01 | -0.878781 | 2.126836e-69 | 1.124762e-65 |
| MsG0280010888.01 | MsG0480019693.01 | -0.847790 | 9.252269e-60 | 1.662995e-56 |
| MsG0280010888.01 | MsG0480019752.01 | -0.800545 | 1.370739e-48 | 6.399788e-46 |
| MsG0280010888.01 | MsG0480020229.01 | -0.829613 | 4.666385e-55 | 4.800564e-52 |
| MsG0280010888.01 | MsG0480020433.01 | -0.819085 | 1.397897e-52 | 1.065214e-49 |
| MsG0280010888.01 | MsG0480020928.01 | 0.801880 | 7.307872e-49 | 3.529385e-46 |
| MsG0280010888.01 | MsG0480021597.01 | -0.820363 | 7.135282e-53 | 5.634039e-50 |
| MsG0280010888.01 | MsG0480021856.01 | -0.813342 | 2.687228e-51 | 1.750296e-48 |
| MsG0280010888.01 | MsG0480021999.01 | -0.819364 | 1.207619e-52 | 9.272931e-50 |
| MsG0280010888.01 | MsG0480022002.01 | -0.801570 | 8.460016e-49 | 4.053605e-46 |
| MsG0280010888.01 | MsG0480022664.01 | -0.823745 | 1.174085e-53 | 1.019858e-50 |
| MsG0280010888.01 | MsG0480022968.01 | 0.860335 | 2.219143e-63 | 6.044160e-60 |
| MsG0280010888.01 | MsG0480023148.01 | -0.840688 | 7.481193e-58 | 1.073908e-54 |
| MsG0280010888.01 | MsG0480023166.01 | -0.810190 | 1.303508e-50 | 7.805985e-48 |
| MsG0280010888.01 | MsG0480023211.01 | -0.807434 | 5.065241e-50 | 2.820908e-47 |
| MsG0280010888.01 | MsG0480023498.01 | -0.820236 | 7.629130e-53 | 6.002766e-50 |
| MsG0280010888.01 | MsG0480023502.01 | -0.820618 | 6.236302e-53 | 4.958718e-50 |
| MsG0280010888.01 | MsG0480023616.01 | -0.839079 | 1.963278e-57 | 2.681447e-54 |
| MsG0280010888.01 | MsG0480023740.01 | -0.800303 | 1.535365e-48 | 7.124873e-46 |
| MsG0280010888.01 | MsG0480023821.01 | -0.843453 | 1.388087e-58 | 2.172899e-55 |
| MsG0280010888.01 | MsG0480023925.01 | 0.811744 | 6.006883e-51 | 3.748409e-48 |
| MsG0280010888.01 | MsG0580024201.01 | -0.825202 | 5.329168e-54 | 4.825136e-51 |
| MsG0280010888.01 | MsG0580024608.01 | -0.809658 | 1.696886e-50 | 1.002188e-47 |
| MsG0280010888.01 | MsG0580024763.01 | -0.821045 | 4.975218e-53 | 4.004037e-50 |
| MsG0280010888.01 | MsG0580024976.01 | 0.806082 | 9.777853e-50 | 5.259186e-47 |
| MsG0280010888.01 | MsG0580025301.01 | -0.837373 | 5.402027e-57 | 7.002485e-54 |
| MsG0280010888.01 | MsG0580026050.01 | -0.806867 | 6.677496e-50 | 3.664582e-47 |
| MsG0280010888.01 | MsG0580028092.01 | -0.838587 | 2.632422e-57 | 3.542065e-54 |
| MsG0280010888.01 | MsG0580028093.01 | -0.858112 | 1.030163e-62 | 2.600559e-59 |
| MsG0280010888.01 | MsG0580028422.01 | -0.825499 | 4.533812e-54 | 4.139589e-51 |
| MsG0280010888.01 | MsG0580029433.01 | -0.836955 | 6.907069e-57 | 8.840952e-54 |
| MsG0280010888.01 | MsG0680030902.01 | -0.813565 | 2.399930e-51 | 1.572684e-48 |
| MsG0280010888.01 | MsG0680031996.01 | -0.845118 | 4.958185e-59 | 8.177744e-56 |
| MsG0280010888.01 | MsG0680031997.01 | -0.842199 | 2.992411e-58 | 4.502677e-55 |
| MsG0280010888.01 | MsG0680031998.01 | -0.804022 | 2.637117e-49 | 1.345276e-46 |
| MsG0280010888.01 | MsG0680032000.01 | -0.834948 | 2.231087e-56 | 2.688580e-53 |
| MsG0280010888.01 | MsG0680032002.01 | -0.836898 | 7.142599e-57 | 9.126893e-54 |
| MsG0280010888.01 | MsG0680032003.01 | -0.827741 | 1.322869e-54 | 1.288374e-51 |
| MsG0280010888.01 | MsG0780036509.01 | -0.826283 | 2.953769e-54 | 2.757890e-51 |
| MsG0280010888.01 | MsG0780036584.01 | -0.801911 | 7.202069e-49 | 3.480902e-46 |
| MsG0280010888.01 | MsG0780037351.01 | -0.824405 | 8.216002e-54 | 7.269900e-51 |
| MsG0280010888.01 | MsG0780037944.01 | -0.801016 | 1.098530e-48 | 5.190947e-46 |
| MsG0280010888.01 | MsG0780037999.01 | 0.834310 | 3.228041e-56 | 3.816242e-53 |
| MsG0280010888.01 | MsG0780039179.01 | -0.821019 | 5.042161e-53 | 4.055023e-50 |
| MsG0280010888.01 | MsG0780039230.01 | -0.827903 | 1.209851e-54 | 1.183872e-51 |
| MsG0280010888.01 | MsG0780039795.01 | -0.822481 | 2.315173e-53 | 1.940182e-50 |
| MsG0280010888.01 | MsG0780039805.01 | -0.806463 | 8.126458e-50 | 4.413743e-47 |
| MsG0280010888.01 | MsG0780039984.01 | 0.803816 | 2.910553e-49 | 1.476905e-46 |
| MsG0280010888.01 | MsG0780040155.01 | -0.810115 | 1.353403e-50 | 8.089466e-48 |
| MsG0280010888.01 | MsG0780040175.01 | -0.829196 | 5.892431e-55 | 5.988684e-52 |
| MsG0280010888.01 | MsG0780040319.01 | -0.813749 | 2.186302e-51 | 1.439819e-48 |
| MsG0280010888.01 | MsG0780040413.01 | -0.807971 | 3.894769e-50 | 2.199670e-47 |
| MsG0280010888.01 | MsG0780040877.01 | 0.805498 | 1.296585e-49 | 6.870092e-47 |
| MsG0280010888.01 | MsG0780041129.01 | -0.839038 | 2.012559e-57 | 2.745247e-54 |
| MsG0280010888.01 | MsG0780041272.01 | -0.801070 | 1.070881e-48 | 5.067068e-46 |
| MsG0280010888.01 | MsG0780041588.01 | -0.813391 | 2.620779e-51 | 1.709391e-48 |
| MsG0280010888.01 | MsG0780041778.01 | -0.821716 | 3.481587e-53 | 2.854812e-50 |
| MsG0280010888.01 | MsG0880041850.01 | -0.814941 | 1.192047e-51 | 8.107559e-49 |
| MsG0280010888.01 | MsG0880043156.01 | -0.829175 | 5.963314e-55 | 6.056677e-52 |
| MsG0280010888.01 | MsG0880043235.01 | -0.813730 | 2.207239e-51 | 1.452919e-48 |
| MsG0280010888.01 | MsG0880043515.01 | -0.808522 | 2.971479e-50 | 1.702800e-47 |
| MsG0280010888.01 | MsG0880043913.01 | -0.814997 | 1.158364e-51 | 7.890740e-49 |
| MsG0280010888.01 | MsG0880044453.01 | -0.804933 | 1.702962e-49 | 8.893891e-47 |
| MsG0280010888.01 | MsG0880044595.01 | -0.802074 | 6.667013e-49 | 3.235685e-46 |
| MsG0280010888.01 | MsG0880045377.01 | -0.813275 | 2.779794e-51 | 1.807239e-48 |
| MsG0280010888.01 | MsG0880045409.01 | -0.828633 | 8.068266e-55 | 8.064986e-52 |
| MsG0280010888.01 | MsG0880045411.01 | -0.831413 | 1.693196e-55 | 1.835943e-52 |
| MsG0280010888.01 | MsG0880045423.01 | -0.833344 | 5.629347e-56 | 6.465408e-53 |
| MsG0280010888.01 | MsG0880045624.01 | -0.801808 | 7.560195e-49 | 3.644421e-46 |
| MsG0280010888.01 | MsG0880045929.01 | -0.809014 | 2.332269e-50 | 1.353886e-47 |
| MsG0280010888.01 | MsG0880046025.01 | -0.812532 | 4.043261e-51 | 2.577262e-48 |
| MsG0280010888.01 | MsG0880046048.01 | -0.805652 | 1.203690e-49 | 6.403441e-47 |
| MsG0280010888.01 | MsG0880046533.01 | -0.809873 | 1.525680e-50 | 9.061554e-48 |
| MsG0280010888.01 | MsG0880047111.01 | -0.831117 | 2.002059e-55 | 2.151889e-52 |
| MsG0280010888.01 | MsG0880047112.01 | -0.835783 | 1.372258e-56 | 1.695502e-53 |
| MsG0280006587.01 | MsG0280010888.01 | -0.804301 | 2.306682e-49 | 1.185164e-46 |
| MsG0280007016.01 | MsG0280010888.01 | -0.811020 | 8.627446e-51 | 5.282252e-48 |
| MsG0280007084.01 | MsG0280010888.01 | 0.822264 | 2.599493e-53 | 2.165018e-50 |
| MsG0280007227.01 | MsG0280010888.01 | 0.804393 | 2.207598e-49 | 1.136896e-46 |
| MsG0280007561.01 | MsG0280010888.01 | -0.801220 | 9.978993e-49 | 4.739431e-46 |
| MsG0280007754.01 | MsG0280010888.01 | -0.820222 | 7.686604e-53 | 6.045679e-50 |
| MsG0280007755.01 | MsG0280010888.01 | -0.811736 | 6.029444e-51 | 3.761863e-48 |
| MsG0280009103.01 | MsG0280010888.01 | -0.808684 | 2.744184e-50 | 1.579098e-47 |
| MsG0280009287.01 | MsG0280010888.01 | -0.803566 | 3.278919e-49 | 1.653280e-46 |
| MsG0280009434.01 | MsG0280010888.01 | -0.808632 | 2.815626e-50 | 1.617977e-47 |
| MsG0280009435.01 | MsG0280010888.01 | -0.802670 | 5.026022e-49 | 2.476531e-46 |
| MsG0280009436.01 | MsG0280010888.01 | -0.801459 | 8.914248e-49 | 4.259388e-46 |
| MsG0280009901.01 | MsG0280010888.01 | -0.803399 | 3.552109e-49 | 1.783238e-46 |
| MsG0280010523.01 | MsG0280010888.01 | -0.804001 | 2.664178e-49 | 1.358344e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280010888.01.T03 | MTR_2g093770 | 100.000 | 48 | 0 | 0 | 1 | 48 | 60 | 107 | 1.25e-30 | 102 |
| MsG0280010888.01.T03 | MTR_1g082400 | 91.111 | 45 | 4 | 0 | 1 | 45 | 61 | 105 | 2.51e-24 | 87.0 |
| MsG0280010888.01.T03 | MTR_4g028080 | 75.000 | 44 | 11 | 0 | 1 | 44 | 37 | 80 | 1.07e-17 | 68.9 |
| MsG0280010888.01.T03 | MTR_8g086330 | 76.744 | 43 | 10 | 0 | 1 | 43 | 37 | 79 | 1.18e-17 | 68.9 |
| MsG0280010888.01.T02 | MTR_2g093770 | 97.778 | 45 | 1 | 0 | 1 | 45 | 1 | 45 | 1.22e-14 | 62.8 |
| MsG0280010888.01.T01 | MTR_2g093770 | 100.000 | 63 | 0 | 0 | 20 | 82 | 45 | 107 | 3.98e-41 | 130 |
| MsG0280010888.01.T01 | MTR_1g082400 | 89.362 | 47 | 5 | 0 | 33 | 79 | 59 | 105 | 1.12e-25 | 91.7 |
| MsG0280010888.01.T01 | MTR_8g086330 | 57.576 | 66 | 28 | 0 | 12 | 77 | 14 | 79 | 7.19e-19 | 73.6 |
| MsG0280010888.01.T01 | MTR_4g028080 | 58.209 | 67 | 28 | 0 | 12 | 78 | 14 | 80 | 9.84e-19 | 73.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280010888.01.T03 | AT5G60460 | 89.130 | 46 | 5 | 0 | 1 | 46 | 62 | 107 | 3.17e-25 | 89.0 |
| MsG0280010888.01.T03 | AT5G60460 | 89.130 | 46 | 5 | 0 | 1 | 46 | 62 | 107 | 3.17e-25 | 89.0 |
| MsG0280010888.01.T03 | AT3G60540 | 72.727 | 44 | 12 | 0 | 1 | 44 | 37 | 80 | 2.42e-17 | 68.2 |
| MsG0280010888.01.T03 | AT3G60540 | 72.727 | 44 | 12 | 0 | 1 | 44 | 37 | 80 | 2.42e-17 | 68.2 |
| MsG0280010888.01.T03 | AT3G60540 | 72.727 | 44 | 12 | 0 | 1 | 44 | 37 | 80 | 2.42e-17 | 68.2 |
| MsG0280010888.01.T03 | AT2G45070 | 77.500 | 40 | 9 | 0 | 1 | 40 | 40 | 79 | 3.33e-17 | 67.8 |
| MsG0280010888.01.T03 | AT2G45070 | 77.500 | 40 | 9 | 0 | 1 | 40 | 40 | 79 | 3.33e-17 | 67.8 |
| MsG0280010888.01.T03 | AT2G45070 | 77.500 | 40 | 9 | 0 | 1 | 40 | 40 | 79 | 3.33e-17 | 67.8 |
| MsG0280010888.01.T03 | AT2G45070 | 77.500 | 40 | 9 | 0 | 1 | 40 | 40 | 79 | 3.33e-17 | 67.8 |
| MsG0280010888.01.T01 | AT5G60460 | 89.362 | 47 | 5 | 0 | 34 | 80 | 61 | 107 | 3.35e-26 | 93.2 |
| MsG0280010888.01.T01 | AT5G60460 | 89.362 | 47 | 5 | 0 | 34 | 80 | 61 | 107 | 3.35e-26 | 93.2 |
| MsG0280010888.01.T01 | AT3G60540 | 51.389 | 72 | 35 | 0 | 7 | 78 | 9 | 80 | 5.05e-18 | 71.6 |
| MsG0280010888.01.T01 | AT3G60540 | 51.389 | 72 | 35 | 0 | 7 | 78 | 9 | 80 | 5.05e-18 | 71.6 |
| MsG0280010888.01.T01 | AT3G60540 | 51.389 | 72 | 35 | 0 | 7 | 78 | 9 | 80 | 5.05e-18 | 71.6 |
| MsG0280010888.01.T01 | AT2G45070 | 74.419 | 43 | 11 | 0 | 35 | 77 | 40 | 82 | 1.13e-17 | 70.5 |
| MsG0280010888.01.T01 | AT2G45070 | 74.419 | 43 | 11 | 0 | 35 | 77 | 40 | 82 | 1.13e-17 | 70.5 |
| MsG0280010888.01.T01 | AT2G45070 | 74.419 | 43 | 11 | 0 | 35 | 77 | 40 | 82 | 1.13e-17 | 70.5 |
| MsG0280010888.01.T01 | AT2G45070 | 74.419 | 43 | 11 | 0 | 35 | 77 | 40 | 82 | 1.13e-17 | 70.5 |
Find 41 sgRNAs with CRISPR-Local
Find 40 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAACGCTGGCGGTGCTGTTC+CGG | 0.259648 | 2:-76426819 | None:intergenic |
| GATTTCACCGACGGTGGTTT+TGG | 0.294926 | 2:+76426906 | MsG0280010888.01.T01:CDS |
| GTCACCGCGCTTCATGTGTT+CGG | 0.324439 | 2:+76426955 | MsG0280010888.01.T01:CDS |
| TCACCGCGCTTCATGTGTTC+GGG | 0.377638 | 2:+76426956 | MsG0280010888.01.T01:CDS |
| TCCTCCTGGACGGGAGGATG+TGG | 0.389528 | 2:-76426729 | None:intergenic |
| GGCTCCGCTGCCGCCACAGC+CGG | 0.408056 | 2:+76426773 | MsG0280010888.01.T01:CDS |
| CATGCCGGCTGTGGCGGCAG+CGG | 0.430788 | 2:-76426777 | None:intergenic |
| GCAGCGAGTCCGCCTCCTCC+TGG | 0.437060 | 2:-76426743 | None:intergenic |
| TCCTCCCGTCCAGGAGGAGG+CGG | 0.463865 | 2:+76426734 | MsG0280010888.01.T02:CDS |
| AACAGCACCGCCAGCGTTGG+AGG | 0.473828 | 2:+76426823 | MsG0280010888.01.T01:CDS |
| ACATCCTCCCGTCCAGGAGG+AGG | 0.475747 | 2:+76426731 | MsG0280010888.01.T02:CDS |
| TATCGTTACAAAGCTGGTGC+TGG | 0.477938 | 2:+76426985 | MsG0280010888.01.T01:CDS |
| ACCTCCACATCCTCCCGTCC+AGG | 0.490070 | 2:+76426725 | MsG0280010888.01.T02:CDS |
| AAGCTTTATCGTTACAAAGC+TGG | 0.494177 | 2:+76426979 | MsG0280010888.01.T01:CDS |
| AGCACCGCCAGCGTTGGAGG+TGG | 0.498786 | 2:+76426826 | MsG0280010888.01.T01:CDS |
| TCGACGACGCATGCCGGCTG+TGG | 0.506267 | 2:-76426786 | None:intergenic |
| ACGACGCATGCCGGCTGTGG+CGG | 0.508943 | 2:-76426783 | None:intergenic |
| GCTAGATCCACCTCCAACGC+TGG | 0.511643 | 2:-76426833 | None:intergenic |
| ATTCTACACTGACGATGCAC+CGG | 0.515056 | 2:+76426876 | MsG0280010888.01.T01:CDS |
| CGTCGTCGACGTCTCACCTC+CGG | 0.515826 | 2:+76426800 | MsG0280010888.01.T01:CDS |
| CGCTGGCGGTGCTGTTCCGG+AGG | 0.517315 | 2:-76426816 | None:intergenic |
| TTCTACACTGACGATGCACC+GGG | 0.517664 | 2:+76426877 | MsG0280010888.01.T01:CDS |
| CGGAACAGCACCGCCAGCGT+TGG | 0.521629 | 2:+76426820 | MsG0280010888.01.T01:CDS |
| CGAGTCCGCCTCCTCCTGGA+CGG | 0.525894 | 2:-76426739 | None:intergenic |
| TCCTGGACGGGAGGATGTGG+AGG | 0.527989 | 2:-76426726 | None:intergenic |
| GAGTCCGCCTCCTCCTGGAC+GGG | 0.535624 | 2:-76426738 | None:intergenic |
| TCCGCCTCCTCCTGGACGGG+AGG | 0.535956 | 2:-76426735 | None:intergenic |
| GTTATGAGTCTCTGCTTCAT+CGG | 0.539263 | 2:+76426928 | MsG0280010888.01.T01:CDS |
| TCTCCACTCATCATGGCTAA+AGG | 0.547275 | 2:+76426680 | None:intergenic |
| TTTGAAGATTTCACCGACGG+TGG | 0.598789 | 2:+76426900 | MsG0280010888.01.T01:CDS |
| GAGACGTCGACGACGCATGC+CGG | 0.602996 | 2:-76426792 | None:intergenic |
| GTGGCGGCAGCGGAGCCACG+TGG | 0.617814 | 2:-76426767 | None:intergenic |
| CTCATAACCAAAACCACCGT+CGG | 0.617981 | 2:-76426913 | None:intergenic |
| AGATCCACCTCCAACGCTGG+CGG | 0.627371 | 2:-76426830 | None:intergenic |
| AGCGTTGGAGGTGGATCTAG+CGG | 0.636568 | 2:+76426835 | MsG0280010888.01.T01:CDS |
| GTCGGTGAAATCTTCAAACC+CGG | 0.639473 | 2:-76426895 | None:intergenic |
| GGGTTTGAAGATTTCACCGA+CGG | 0.641586 | 2:+76426897 | MsG0280010888.01.T01:CDS |
| GGCGGACTCGCTGCACCACG+TGG | 0.650379 | 2:+76426752 | MsG0280010888.01.T02:CDS |
| TCCACATCCTCCCGTCCAGG+AGG | 0.666674 | 2:+76426728 | MsG0280010888.01.T02:CDS |
| GTTGGAGGTGGATCTAGCGG+AGG | 0.684640 | 2:+76426838 | MsG0280010888.01.T01:CDS |
| CTTCCCGAACACATGAAGCG+CGG | 0.732527 | 2:-76426959 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | AAGCTTTATCGTTACAAAGC+TGG | + | Chr2:76426979-76426998 | MsG0280010888.01.T01:CDS | 35.0% |
| GTTATGAGTCTCTGCTTCAT+CGG | + | Chr2:76426928-76426947 | MsG0280010888.01.T01:CDS | 40.0% | |
| ATTCTACACTGACGATGCAC+CGG | + | Chr2:76426876-76426895 | MsG0280010888.01.T01:CDS | 45.0% | |
| CTCATAACCAAAACCACCGT+CGG | - | Chr2:76426916-76426935 | None:intergenic | 45.0% | |
| GGGTTTGAAGATTTCACCGA+CGG | + | Chr2:76426897-76426916 | MsG0280010888.01.T01:CDS | 45.0% | |
| GTCGGTGAAATCTTCAAACC+CGG | - | Chr2:76426898-76426917 | None:intergenic | 45.0% | |
| TATCGTTACAAAGCTGGTGC+TGG | + | Chr2:76426985-76427004 | MsG0280010888.01.T01:CDS | 45.0% | |
| TTTGAAGATTTCACCGACGG+TGG | + | Chr2:76426900-76426919 | MsG0280010888.01.T01:CDS | 45.0% | |
| TTCTACACTGACGATGCACC+GGG | + | Chr2:76426877-76426896 | MsG0280010888.01.T01:CDS | 50.0% | |
| ! | GATTTCACCGACGGTGGTTT+TGG | + | Chr2:76426906-76426925 | MsG0280010888.01.T01:CDS | 50.0% |
| CTTCCCGAACACATGAAGCG+CGG | - | Chr2:76426962-76426981 | None:intergenic | 55.0% | |
| GTCACCGCGCTTCATGTGTT+CGG | + | Chr2:76426955-76426974 | MsG0280010888.01.T01:CDS | 55.0% | |
| TCACCGCGCTTCATGTGTTC+GGG | + | Chr2:76426956-76426975 | MsG0280010888.01.T01:CDS | 55.0% | |
| ! | AGCGTTGGAGGTGGATCTAG+CGG | + | Chr2:76426835-76426854 | MsG0280010888.01.T01:CDS | 55.0% |
| AGATCCACCTCCAACGCTGG+CGG | - | Chr2:76426833-76426852 | None:intergenic | 60.0% | |
| GCTAGATCCACCTCCAACGC+TGG | - | Chr2:76426836-76426855 | None:intergenic | 60.0% | |
| GTTGGAGGTGGATCTAGCGG+AGG | + | Chr2:76426838-76426857 | MsG0280010888.01.T01:CDS | 60.0% | |
| ACATCCTCCCGTCCAGGAGG+AGG | + | Chr2:76426731-76426750 | MsG0280010888.01.T02:CDS | 65.0% | |
| ACCTCCACATCCTCCCGTCC+AGG | + | Chr2:76426725-76426744 | MsG0280010888.01.T02:CDS | 65.0% | |
| CGTCGTCGACGTCTCACCTC+CGG | + | Chr2:76426800-76426819 | MsG0280010888.01.T01:CDS | 65.0% | |
| GAGACGTCGACGACGCATGC+CGG | - | Chr2:76426795-76426814 | None:intergenic | 65.0% | |
| TCCACATCCTCCCGTCCAGG+AGG | + | Chr2:76426728-76426747 | MsG0280010888.01.T02:CDS | 65.0% | |
| TCCTCCTGGACGGGAGGATG+TGG | - | Chr2:76426732-76426751 | None:intergenic | 65.0% | |
| TCCTGGACGGGAGGATGTGG+AGG | - | Chr2:76426729-76426748 | None:intergenic | 65.0% | |
| ! | AACAGCACCGCCAGCGTTGG+AGG | + | Chr2:76426823-76426842 | MsG0280010888.01.T01:CDS | 65.0% |
| !! | CAACGCTGGCGGTGCTGTTC+CGG | - | Chr2:76426822-76426841 | None:intergenic | 65.0% |
| CGAGTCCGCCTCCTCCTGGA+CGG | - | Chr2:76426742-76426761 | None:intergenic | 70.0% | |
| CGGAACAGCACCGCCAGCGT+TGG | + | Chr2:76426820-76426839 | MsG0280010888.01.T01:CDS | 70.0% | |
| GAGTCCGCCTCCTCCTGGAC+GGG | - | Chr2:76426741-76426760 | None:intergenic | 70.0% | |
| TCCTCCCGTCCAGGAGGAGG+CGG | + | Chr2:76426734-76426753 | MsG0280010888.01.T02:CDS | 70.0% | |
| ! | ACGACGCATGCCGGCTGTGG+CGG | - | Chr2:76426786-76426805 | None:intergenic | 70.0% |
| ! | AGCACCGCCAGCGTTGGAGG+TGG | + | Chr2:76426826-76426845 | MsG0280010888.01.T01:CDS | 70.0% |
| ! | TCGACGACGCATGCCGGCTG+TGG | - | Chr2:76426789-76426808 | None:intergenic | 70.0% |
| GCAGCGAGTCCGCCTCCTCC+TGG | - | Chr2:76426746-76426765 | None:intergenic | 75.0% | |
| TCCGCCTCCTCCTGGACGGG+AGG | - | Chr2:76426738-76426757 | None:intergenic | 75.0% | |
| ! | CATGCCGGCTGTGGCGGCAG+CGG | - | Chr2:76426780-76426799 | None:intergenic | 75.0% |
| ! | GGCGGACTCGCTGCACCACG+TGG | + | Chr2:76426752-76426771 | MsG0280010888.01.T02:CDS | 75.0% |
| !! | CGCTGGCGGTGCTGTTCCGG+AGG | - | Chr2:76426819-76426838 | None:intergenic | 75.0% |
| ! | GGCTCCGCTGCCGCCACAGC+CGG | + | Chr2:76426773-76426792 | MsG0280010888.01.T01:CDS | 80.0% |
| ! | GTGGCGGCAGCGGAGCCACG+TGG | - | Chr2:76426770-76426789 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr2 | gene | 76426692 | 76427014 | 76426692 | ID=MsG0280010888.01;Name=MsG0280010888.01 |
| Chr2 | mRNA | 76426766 | 76427014 | 76426766 | ID=MsG0280010888.01.T01;Parent=MsG0280010888.01;Name=MsG0280010888.01.T01;_AED=0.50;_eAED=0.50;_QI=0|-1|0|1|-1|0|1|0|82 |
| Chr2 | exon | 76426766 | 76427014 | 76426766 | ID=MsG0280010888.01.T01:exon:11873;Parent=MsG0280010888.01.T01 |
| Chr2 | CDS | 76426766 | 76427014 | 76426766 | ID=MsG0280010888.01.T01:cds;Parent=MsG0280010888.01.T01 |
| Chr2 | mRNA | 76426692 | 76426874 | 76426692 | ID=MsG0280010888.01.T02;Parent=MsG0280010888.01;Name=MsG0280010888.01.T02;_AED=0.50;_eAED=0.50;_QI=0|-1|0|1|-1|0|1|0|60 |
| Chr2 | exon | 76426692 | 76426874 | 76426692 | ID=MsG0280010888.01.T02:exon:11874;Parent=MsG0280010888.01.T02 |
| Chr2 | CDS | 76426692 | 76426874 | 76426692 | ID=MsG0280010888.01.T02:cds;Parent=MsG0280010888.01.T02 |
| Chr2 | mRNA | 76426868 | 76427014 | 76426868 | ID=MsG0280010888.01.T03;Parent=MsG0280010888.01;Name=MsG0280010888.01.T03;_AED=0.50;_eAED=0.50;_QI=0|-1|0|1|-1|0|1|0|48 |
| Chr2 | exon | 76426868 | 76427014 | 76426868 | ID=MsG0280010888.01.T03:exon:11875;Parent=MsG0280010888.01.T03 |
| Chr2 | CDS | 76426868 | 76427014 | 76426868 | ID=MsG0280010888.01.T03:cds;Parent=MsG0280010888.01.T03 |
| Gene Sequence |
| Protein sequence |
