AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380014728.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380014728.01.T01 MTR_3g462950 99.384 649 4 0 1 649 1 649 0.0 1355
MsG0380014728.01.T01 MTR_3g462970 96.302 649 23 1 1 649 1 648 0.0 1313
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380014728.01.T01 AT2G29630 86.574 648 79 3 2 648 3 643 0.0 1176
MsG0380014728.01.T01 AT2G29630 86.574 648 79 3 2 648 3 643 0.0 1176
MsG0380014728.01.T01 AT2G29630 86.574 648 79 3 2 648 3 643 0.0 1176
MsG0380014728.01.T01 AT2G29630 93.319 479 31 1 170 648 1 478 0.0 947

Find 164 sgRNAs with CRISPR-Local

Find 272 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTATCCTTGGATTTATATTT+TGG 0.054220 3:-58939389 None:intergenic
ATCCAGTCTTTGCGCAATTT+TGG 0.151904 3:-58939817 None:intergenic
GTCATACGCTTTGCAGTTAA+AGG 0.211892 3:-58940375 None:intergenic
TTCTCAAGTGCTTGATAAAT+AGG 0.251529 3:-58940234 None:intergenic
TTAGAACTTATGTAAGATTC+TGG 0.284840 3:-58941782 None:intergenic
AGCTCCATCTTTCATGGCTT+TGG 0.312665 3:+58938982 MsG0380014728.01.T01:CDS
ATCTTCATAGAGCAGAATTT+AGG 0.317121 3:-58941599 None:intergenic
GAAGGAAGTGGAAGAAAATC+AGG 0.325284 3:-58939091 None:intergenic
GGCAACCCGAGATGTTCTTT+TGG 0.349740 3:-58941335 None:intergenic
TTCGAATCTCGCCTTGCTTA+AGG 0.363084 3:-58941459 None:intergenic
GCTATTGGTGCTGCAAATAT+CGG 0.370637 3:+58941278 MsG0380014728.01.T01:CDS
AGAATCTTACATAAGTTCTA+AGG 0.371401 3:+58941784 MsG0380014728.01.T01:CDS
GGACCAGTTTGCTTTGTCAT+TGG 0.374176 3:+58941493 MsG0380014728.01.T01:CDS
TGTGTCATTTGCATCATAAA+TGG 0.379836 3:-58940550 None:intergenic
CAAGCACTTGAGAAAGTTAA+CGG 0.391428 3:+58940243 MsG0380014728.01.T01:CDS
GGAACTAGCTCCATCTTTCA+TGG 0.393139 3:+58938976 MsG0380014728.01.T01:CDS
TTGCCTCGGTTTGACGTTGT+TGG 0.393144 3:+58938929 MsG0380014728.01.T01:CDS
TAACTCCAAGTGCTTCTTGT+TGG 0.399754 3:-58939998 None:intergenic
GCCTTCACATCATCTCTGTT+TGG 0.401765 3:-58941356 None:intergenic
GATCACATCACCTCTGCTAT+TGG 0.404414 3:+58941263 MsG0380014728.01.T01:CDS
AGATCCACTCTCGAGTTTCA+TGG 0.405158 3:-58940179 None:intergenic
GACAAGTGAACTCGTCGAAA+TGG 0.410450 3:-58939324 None:intergenic
TCCCAAAATTGCGCAAAGAC+TGG 0.411074 3:+58939815 MsG0380014728.01.T01:CDS
TCCTCCTCTCGAAACTATTC+CGG 0.421577 3:-58940397 None:intergenic
ACTTCTGACCTCACAAACTC+TGG 0.423397 3:-58939949 None:intergenic
ACATCGGTTGTTTGCAAGAA+TGG 0.425864 3:+58938866 MsG0380014728.01.T01:CDS
TCCATGCAGGAGTACTTCTT+AGG 0.427343 3:+58940346 MsG0380014728.01.T01:CDS
TTTCGACGAGTTCACTTGTC+TGG 0.428378 3:+58939327 MsG0380014728.01.T01:CDS
TTGTTCAGCTTGTTCAATCA+AGG 0.434529 3:-58940304 None:intergenic
GGAAGAAAATCAGGAGAAGC+AGG 0.436560 3:-58939082 None:intergenic
AGGAAGTTTACAAGGTTCAA+TGG 0.445895 3:+58940103 MsG0380014728.01.T01:CDS
AACATCCACACGCTCAAGAA+TGG 0.446775 3:+58941429 MsG0380014728.01.T01:CDS
TGGAAGGCCATGGCTGTCAT+TGG 0.450482 3:-58941518 None:intergenic
AGAATTTCGCTTATGAGCAC+TGG 0.450600 3:+58940457 MsG0380014728.01.T01:CDS
GGGGCAATATCAGTTGTTAA+AGG 0.450845 3:-58941233 None:intergenic
CGCAACTCTGCCGTACCAGT+TGG 0.451139 3:+58940204 MsG0380014728.01.T01:CDS
CATGTTTCTCAGCATACTTT+CGG 0.451161 3:-58941634 None:intergenic
TTGGACGCTCTTCAAATGCT+TGG 0.458747 3:+58938948 MsG0380014728.01.T01:CDS
TTGTCTGCATTAGTTGTTGG+AGG 0.466271 3:-58939031 None:intergenic
TCTTATCTGCAGAAATGAAA+TGG 0.469993 3:-58937605 None:intergenic
TTGAGCGTGTGGATGTTGTT+TGG 0.470937 3:-58941423 None:intergenic
TGCGCAAAGACTGGATTGAT+AGG 0.476088 3:+58939824 MsG0380014728.01.T01:CDS
TCTTTACAGGTGATGAATGA+AGG 0.476347 3:+58941122 MsG0380014728.01.T01:intron
GAGAGAGAGACCTGAAAAGC+TGG 0.479625 3:-58937628 None:intergenic
GATCCAATGACAAAGCAAAC+TGG 0.481172 3:-58941496 None:intergenic
GGAAGTTTACAAGGTTCAAT+GGG 0.485099 3:+58940104 MsG0380014728.01.T01:CDS
GGTACCAAAGCCATGAAAGA+TGG 0.485591 3:-58938986 None:intergenic
GAAGCGCCTTTCTACACTCT+TGG 0.487809 3:+58941209 MsG0380014728.01.T01:CDS
ACATCCACACGCTCAAGAAT+GGG 0.491638 3:+58941430 MsG0380014728.01.T01:CDS
CACTCGTAGAGCATGGGAAA+AGG 0.493579 3:+58940608 MsG0380014728.01.T01:CDS
CGAAAGTATGCTGAGAAACA+TGG 0.494520 3:+58941635 MsG0380014728.01.T01:CDS
ACAGTCATGGATCTCTCAAC+TGG 0.496297 3:+58940147 MsG0380014728.01.T01:CDS
CTCTTCAAATGCTTGGAAGA+AGG 0.496316 3:+58938955 MsG0380014728.01.T01:CDS
TAGTACATCTGAGTGAATCT+TGG 0.499210 3:-58939865 None:intergenic
GGAAAGCACTCTTCGAAGGA+AGG 0.503210 3:-58939109 None:intergenic
TCCAAGTGCTTCTTGTTGGA+AGG 0.503675 3:-58939994 None:intergenic
AGCATGGGAAAAGGATGTAC+AGG 0.504706 3:+58940617 MsG0380014728.01.T01:CDS
AACAGAGATGATGTGAAGGC+TGG 0.505621 3:+58941359 MsG0380014728.01.T01:CDS
TATGCTGAGAAACATGGGTA+TGG 0.505869 3:+58941641 MsG0380014728.01.T01:CDS
TGTTGAGGAAGCTTTGAAGC+AGG 0.506554 3:+58941670 MsG0380014728.01.T01:CDS
ATAAGTTCTAAGGAAGGGTA+AGG 0.508545 3:+58941794 MsG0380014728.01.T01:CDS
CCCTTCCAACAAGAAGCACT+TGG 0.511786 3:+58939993 MsG0380014728.01.T01:CDS
TTAACAACTGATATTGCCCC+TGG 0.515610 3:+58941236 MsG0380014728.01.T01:CDS
TTTGTAGTTCTGCGTTGAGA+TGG 0.516747 3:+58938823 MsG0380014728.01.T01:intron
GCTGCAAATATCGGCGCACT+TGG 0.517732 3:+58941287 MsG0380014728.01.T01:CDS
GCAACTCTGCCGTACCAGTT+GGG 0.522033 3:+58940205 MsG0380014728.01.T01:CDS
TTGTGCATTGGAACATGTCC+TGG 0.523358 3:-58941146 None:intergenic
AGGTTCAATGGGCAACTATG+TGG 0.524862 3:+58940115 MsG0380014728.01.T01:CDS
ATGCTGAGAAACATGGGTAT+GGG 0.525160 3:+58941642 MsG0380014728.01.T01:CDS
TAAATAGGTACAGTCCCAAC+TGG 0.528500 3:-58940219 None:intergenic
CACTCTTCGAAGGAAGGAAG+TGG 0.529174 3:-58939103 None:intergenic
GAGGTGATGTGATCGTAACC+AGG 0.529839 3:-58941254 None:intergenic
TTCTCCTTGTGTCAAAAGCT+CGG 0.530462 3:-58940583 None:intergenic
CCAAGTGCTTCTTGTTGGAA+GGG 0.531742 3:-58939993 None:intergenic
TCGAATGTCAATGTGGCTCT+AGG 0.534491 3:-58939007 None:intergenic
GGTTCAATGGGCAACTATGT+GGG 0.535263 3:+58940116 MsG0380014728.01.T01:CDS
GAATTGCAGAAGATCTTACC+TGG 0.537643 3:+58940265 MsG0380014728.01.T01:CDS
TATAGAAGAGGAAGTTTACA+AGG 0.538528 3:+58940095 MsG0380014728.01.T01:CDS
CCGTTCACTCTCTCAATCAC+TGG 0.539805 3:+58937582 MsG0380014728.01.T01:five_prime_UTR
CTTTGGAAAGCACTCTTCGA+AGG 0.540073 3:-58939113 None:intergenic
CAAAGAGCACAAAAGAATCC+AGG 0.542624 3:+58939131 MsG0380014728.01.T01:CDS
TTAACTGCAAAGCGTATGAC+CGG 0.544274 3:+58940378 MsG0380014728.01.T01:CDS
GATTACTTCACCATCCATGC+AGG 0.544906 3:+58940333 MsG0380014728.01.T01:CDS
TGACTCCAAAAGAACATCTC+GGG 0.547374 3:+58941330 MsG0380014728.01.T01:CDS
AAGAAGTACTCCTGCATGGA+TGG 0.547995 3:-58940343 None:intergenic
AGGCGAGATTCGAATTTCGA+TGG 0.553178 3:+58941468 MsG0380014728.01.T01:CDS
GTGACTCCAAAAGAACATCT+CGG 0.553820 3:+58941329 MsG0380014728.01.T01:CDS
TTTGCATCATAAATGGATCC+AGG 0.553908 3:-58940543 None:intergenic
TGGGTATGGGGAGGATGTTG+AGG 0.553974 3:+58941655 MsG0380014728.01.T01:CDS
GAGAACTCACTCGTAGAGCA+TGG 0.554254 3:+58940601 MsG0380014728.01.T01:CDS
GATGAAACATTGCCGTCAGA+AGG 0.559015 3:+58941542 MsG0380014728.01.T01:CDS
ATTGGTGATGGTTTAAGACC+TGG 0.559490 3:+58940525 MsG0380014728.01.T01:CDS
GTGAAAGTGAATGCAAACAT+TGG 0.562428 3:+58940051 MsG0380014728.01.T01:CDS
GGAGAACAACATGGTGAAGC+TGG 0.563050 3:+58941743 MsG0380014728.01.T01:CDS
TGTTTCATCGTGGAAGGCCA+TGG 0.563251 3:-58941528 None:intergenic
CGGCAATGTTTCATCGTGGA+AGG 0.564410 3:-58941534 None:intergenic
GAGTTAGAGCCTACGATAGT+CGG 0.564536 3:+58940015 MsG0380014728.01.T01:CDS
ACTCTCGAGTTTCATGGATG+TGG 0.564591 3:-58940173 None:intergenic
CAAAATATAAATCCAAGGAT+AGG 0.566379 3:+58939390 MsG0380014728.01.T01:CDS
AGTTGTAAGCTCTATAGAAG+AGG 0.566957 3:+58940083 MsG0380014728.01.T01:CDS
TTGAGGAAGCTTTGAAGCAG+GGG 0.567473 3:+58941672 MsG0380014728.01.T01:CDS
TGCTGAGAAACATGGGTATG+GGG 0.570958 3:+58941643 MsG0380014728.01.T01:CDS
GTCCCCAAAATATAAATCCA+AGG 0.580202 3:+58939385 MsG0380014728.01.T01:CDS
AGGTACAGTCCCAACTGGTA+CGG 0.580702 3:-58940214 None:intergenic
GCCACCTTTGCACCTTCTGA+CGG 0.581477 3:-58941554 None:intergenic
GAGATTCGAATTTCGATGGA+TGG 0.581534 3:+58941472 MsG0380014728.01.T01:CDS
GGTGTCCCTGAAAACCTCCC+AGG 0.584409 3:-58940283 None:intergenic
ACCTAAGAAGTACTCCTGCA+TGG 0.587436 3:-58940347 None:intergenic
ACCGGAATAGTTTCGAGAGG+AGG 0.587460 3:+58940396 MsG0380014728.01.T01:CDS
CTTTACAGGTGATGAATGAA+GGG 0.587534 3:+58941123 MsG0380014728.01.T01:intron
GTGGCACTATCCATTGGTGA+TGG 0.588590 3:+58940513 MsG0380014728.01.T01:CDS
GTTGAGGAAGCTTTGAAGCA+GGG 0.589019 3:+58941671 MsG0380014728.01.T01:CDS
GAATTTCGCTTATGAGCACT+GGG 0.590654 3:+58940458 MsG0380014728.01.T01:CDS
CTTCTGACCTCACAAACTCT+GGG 0.591661 3:-58939948 None:intergenic
TCATCCCATTCTTGAGCGTG+TGG 0.592866 3:-58941434 None:intergenic
AGGTCTTAAACCATCACCAA+TGG 0.593742 3:-58940523 None:intergenic
GGAACTTTGATTGAGAAGCA+TGG 0.599287 3:-58938892 None:intergenic
GCCGTCAGAAGGTGCAAAGG+TGG 0.600402 3:+58941553 MsG0380014728.01.T01:CDS
ATCAGGAGAAGCAGGGTCAA+CGG 0.601985 3:-58939074 None:intergenic
AAAGGACCAAGAGTGTAGAA+AGG 0.604245 3:-58941215 None:intergenic
CAAGTCGTTCATGAAGAAAG+TGG 0.608387 3:+58939285 MsG0380014728.01.T01:CDS
TCTTACATAAGTTCTAAGGA+AGG 0.608799 3:+58941788 MsG0380014728.01.T01:CDS
AGAACTCACTCGTAGAGCAT+GGG 0.608989 3:+58940602 MsG0380014728.01.T01:CDS
AGCTCAACCCAGAGTTTGTG+AGG 0.611324 3:+58939941 MsG0380014728.01.T01:CDS
CTTACATAAGTTCTAAGGAA+GGG 0.612945 3:+58941789 MsG0380014728.01.T01:CDS
GTGGGGAGCTGATACAGTCA+TGG 0.615728 3:+58940134 MsG0380014728.01.T01:CDS
ACATCCATGAAACTCGAGAG+TGG 0.616555 3:+58940175 MsG0380014728.01.T01:CDS
GTGAGGTCAGAAGTTGCTCG+TGG 0.618370 3:+58939958 MsG0380014728.01.T01:CDS
CAGATGTACTATGCTAAGCA+AGG 0.620937 3:+58939877 MsG0380014728.01.T01:CDS
TTGATTGAACAAGCTGAACA+AGG 0.623641 3:+58940306 MsG0380014728.01.T01:CDS
AAGTTCCTTCCGACTATCGT+AGG 0.624438 3:-58940024 None:intergenic
ATTGGATCCAATGACAGCCA+TGG 0.627534 3:+58941511 MsG0380014728.01.T01:CDS
GCACATTTCTGCTCGATGTG+TGG 0.628841 3:+58941575 MsG0380014728.01.T01:CDS
GAAAGTATGCTGAGAAACAT+GGG 0.629017 3:+58941636 MsG0380014728.01.T01:CDS
CAGGTGATGAATGAAGGGCC+AGG 0.634433 3:+58941128 MsG0380014728.01.T01:intron
ATGGGATGATGCCTTAAGCA+AGG 0.635329 3:+58941448 MsG0380014728.01.T01:CDS
TGCAGAAGATCTTACCTGGG+AGG 0.635440 3:+58940269 MsG0380014728.01.T01:CDS
CCAGTGATTGAGAGAGTGAA+CGG 0.637626 3:-58937582 None:intergenic
GTTCAATGGGCAACTATGTG+GGG 0.639981 3:+58940117 MsG0380014728.01.T01:CDS
AGGTGATGTGATCGTAACCA+GGG 0.640270 3:-58941253 None:intergenic
ATTGCCGTCAGAAGGTGCAA+AGG 0.640952 3:+58941550 MsG0380014728.01.T01:CDS
TTCTATAGAGCTTACAACTG+CGG 0.643002 3:-58940079 None:intergenic
TATGATGTGGCACTATCCAT+TGG 0.649646 3:+58940507 MsG0380014728.01.T01:CDS
GCCAAACAGAGATGATGTGA+AGG 0.651430 3:+58941355 MsG0380014728.01.T01:CDS
GAAGAAAATCAGGAGAAGCA+GGG 0.652132 3:-58939081 None:intergenic
GCTGCGAAGAAAACGATCAG+TGG 0.655933 3:+58941722 MsG0380014728.01.T01:CDS
GAGGATCAATTCATGCAAAG+TGG 0.658351 3:+58940415 MsG0380014728.01.T01:CDS
GAACAACATGGTGAAGCTGG+TGG 0.662902 3:+58941746 MsG0380014728.01.T01:CDS
CATCTGCAATCAGTATGATG+TGG 0.665975 3:+58940494 MsG0380014728.01.T01:CDS
ATTTGCAGCACCAATAGCAG+AGG 0.676582 3:-58941273 None:intergenic
CTGCTCTATGAAGATAACTG+AGG 0.678362 3:+58941607 MsG0380014728.01.T01:CDS
TAGAGCCTACGATAGTCGGA+AGG 0.685636 3:+58940019 MsG0380014728.01.T01:CDS
CGTCCAACAACGTCAAACCG+AGG 0.694328 3:-58938932 None:intergenic
AATTGCAGAAGATCTTACCT+GGG 0.696780 3:+58940266 MsG0380014728.01.T01:CDS
TTTGATAACTATGACACCAG+TGG 0.702964 3:+58939363 MsG0380014728.01.T01:CDS
ACGATCAGTGGAGAACAACA+TGG 0.703526 3:+58941734 MsG0380014728.01.T01:CDS
ATGACCGGAATAGTTTCGAG+AGG 0.705079 3:+58940393 MsG0380014728.01.T01:CDS
GGTGCATGCTAATGTGACAT+CGG 0.705767 3:+58938850 MsG0380014728.01.T01:CDS
CTGACGGCAATGTTTCATCG+TGG 0.708024 3:-58941538 None:intergenic
TGAGAAACATGGGTATGGGG+AGG 0.712571 3:+58941646 MsG0380014728.01.T01:CDS
TAAGCAAGGAATCATTACTG+AGG 0.730396 3:+58939891 MsG0380014728.01.T01:CDS
GGTGATGTGATCGTAACCAG+GGG 0.734207 3:-58941252 None:intergenic
GTTCTGCGTTGAGATGGCGT+CGG 0.734906 3:+58938829 MsG0380014728.01.T01:intron
TGGAGGATCGAATGTCAATG+TGG 0.751684 3:-58939014 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATTTAAAAAAAATGAGG+TGG + Chr3:58938206-58938225 MsG0380014728.01.T01:intron 15.0%
!! GAAAATTGAATTAATTTAGT+TGG + Chr3:58939764-58939783 MsG0380014728.01.T01:intron 15.0%
!! TTTATATACAAGAACTTATA+TGG - Chr3:58940940-58940959 None:intergenic 15.0%
!!! ACTATTATAGTCATATTTTT+TGG + Chr3:58940790-58940809 MsG0380014728.01.T01:intron 15.0%
!!! ATAATATCTTTTTTGTAAAG+GGG + Chr3:58938274-58938293 MsG0380014728.01.T01:intron 15.0%
!!! ATATCAAATTTTTAAACAAC+TGG - Chr3:58938791-58938810 None:intergenic 15.0%
!!! CATAATATCTTTTTTGTAAA+GGG + Chr3:58938273-58938292 MsG0380014728.01.T01:intron 15.0%
!!! TAACTACCATAAATATATTT+TGG + Chr3:58941067-58941086 MsG0380014728.01.T01:intron 15.0%
!!! TCATAATATCTTTTTTGTAA+AGG + Chr3:58938272-58938291 MsG0380014728.01.T01:intron 15.0%
!! AAAAATGAGAATCATTCTTA+GGG + Chr3:58938617-58938636 MsG0380014728.01.T01:intron 20.0%
!! AAGTAAACAAAAAGAAATCA+TGG - Chr3:58941096-58941115 None:intergenic 20.0%
!! AATTAATATATCATGTTTCC+AGG + Chr3:58939262-58939281 MsG0380014728.01.T01:intron 20.0%
!! ACGAAAAATCTAAATCTAAT+TGG + Chr3:58938068-58938087 MsG0380014728.01.T01:intron 20.0%
!! AGTTTGTACATATAACAAAA+TGG - Chr3:58938506-58938525 None:intergenic 20.0%
!! ATTAAATCTAGTTAAAACCA+TGG - Chr3:58940891-58940910 None:intergenic 20.0%
!! GAGATAAATCTAAATCTAAT+TGG + Chr3:58938105-58938124 MsG0380014728.01.T01:intron 20.0%
!! GGATATGTACATATTATATA+AGG - Chr3:58940710-58940729 None:intergenic 20.0%
!! GTTAATAGAAATTAAGAGTT+TGG - Chr3:58939573-58939592 None:intergenic 20.0%
!! TTTCATCATATTTATTCGAT+TGG - Chr3:58938600-58938619 None:intergenic 20.0%
!!! AATTCAATTTTCTAAAGACT+TGG - Chr3:58939756-58939775 None:intergenic 20.0%
!!! ACATACTTTTCAATATCAAT+AGG + Chr3:58939175-58939194 MsG0380014728.01.T01:intron 20.0%
!!! CTATTTTAGTATATAACAAC+TGG - Chr3:58940864-58940883 None:intergenic 20.0%
!!! TATCCTTGGATTTATATTTT+GGG - Chr3:58939391-58939410 None:intergenic 20.0%
!!! TGTTTTCATGTATTTGAATT+AGG + Chr3:58939790-58939809 MsG0380014728.01.T01:intron 20.0%
!!! TTGATTTTTTCTTATAACCT+TGG + Chr3:58937761-58937780 MsG0380014728.01.T01:intron 20.0%
!!! TTTTTTGGTATAATTGACTT+AGG + Chr3:58940805-58940824 MsG0380014728.01.T01:intron 20.0%
! AAAATGAGAATCATTCTTAG+GGG + Chr3:58938618-58938637 MsG0380014728.01.T01:intron 25.0%
! AAGATATAAAGAAAATGCCA+TGG - Chr3:58939441-58939460 None:intergenic 25.0%
! AGAATCTTACATAAGTTCTA+AGG + Chr3:58941784-58941803 MsG0380014728.01.T01:CDS 25.0%
! ATGAAAAGAAATGCAGAAAA+TGG - Chr3:58940731-58940750 None:intergenic 25.0%
! ATTGATAGGAGAGAAAAAAT+CGG + Chr3:58939838-58939857 MsG0380014728.01.T01:CDS 25.0%
! ATTTCGTAGTATGAATAACA+AGG + Chr3:58940756-58940775 MsG0380014728.01.T01:intron 25.0%
! CAAAATATAAATCCAAGGAT+AGG + Chr3:58939390-58939409 MsG0380014728.01.T01:CDS 25.0%
! GAAAAATGAGAATCATTCTT+AGG + Chr3:58938616-58938635 MsG0380014728.01.T01:intron 25.0%
! GATGATAGTCGAAATATATT+AGG - Chr3:58941036-58941055 None:intergenic 25.0%
! GTCAATGTATATTGCAAAAA+TGG - Chr3:58939595-58939614 None:intergenic 25.0%
! TAATAACAAAGTTGAAGTTG+AGG - Chr3:58940686-58940705 None:intergenic 25.0%
! TAATGAAAACAAAGTATACC+TGG - Chr3:58939152-58939171 None:intergenic 25.0%
! TGAATAATGTTAGACTAGTA+AGG + Chr3:58939483-58939502 MsG0380014728.01.T01:intron 25.0%
! TGGTCTCCAAAATATATTTA+TGG - Chr3:58941076-58941095 None:intergenic 25.0%
! TTAGAACTTATGTAAGATTC+TGG - Chr3:58941785-58941804 None:intergenic 25.0%
! TTCTTTATATCTTGAATCTG+TGG + Chr3:58939448-58939467 MsG0380014728.01.T01:intron 25.0%
! TTGTAGGTTATTCAACTTAA+GGG + Chr3:58938160-58938179 MsG0380014728.01.T01:intron 25.0%
! TTTGTAGGTTATTCAACTTA+AGG + Chr3:58938159-58938178 MsG0380014728.01.T01:intron 25.0%
!! AATTTGTGTCTGGATATTTT+TGG + Chr3:58938383-58938402 MsG0380014728.01.T01:intron 25.0%
!! ATCCTTGGATTTATATTTTG+GGG - Chr3:58939390-58939409 None:intergenic 25.0%
!! ATTTGTGTCTGGATATTTTT+GGG + Chr3:58938384-58938403 MsG0380014728.01.T01:intron 25.0%
!! CTATCCTTGGATTTATATTT+TGG - Chr3:58939392-58939411 None:intergenic 25.0%
!!! ATGGTGTTGTAAATTTTTGT+AGG + Chr3:58938144-58938163 MsG0380014728.01.T01:intron 25.0%
!!! GTTTATGTTTTTGTCTTGTT+CGG + Chr3:58938318-58938337 MsG0380014728.01.T01:intron 25.0%
!!! TGGTTTGTTTACAATAGTTA+TGG + Chr3:58938125-58938144 MsG0380014728.01.T01:intron 25.0%
ATAACTCTTGCATCACAATA+TGG + Chr3:58938237-58938256 MsG0380014728.01.T01:intron 30.0%
ATCTTCATAGAGCAGAATTT+AGG - Chr3:58941602-58941621 None:intergenic 30.0%
ATTTGAGAACAGTGAGATTA+GGG + Chr3:58937795-58937814 MsG0380014728.01.T01:intron 30.0%
GTAGTGCATGTTTGAATTAA+CGG - Chr3:58938050-58938069 None:intergenic 30.0%
TAACAAAATGGAAGCAAGAT+AGG - Chr3:58938494-58938513 None:intergenic 30.0%
TAATTATAAGCGTGCATGTT+TGG + Chr3:58937925-58937944 MsG0380014728.01.T01:intron 30.0%
TATACTAAAATAGTGCACCA+TGG + Chr3:58940871-58940890 MsG0380014728.01.T01:intron 30.0%
TATAGAAGAGGAAGTTTACA+AGG + Chr3:58940095-58940114 MsG0380014728.01.T01:CDS 30.0%
TCAAATGCAATCAAAAACCA+AGG - Chr3:58937781-58937800 None:intergenic 30.0%
TCTTATCTGCAGAAATGAAA+TGG - Chr3:58937608-58937627 None:intergenic 30.0%
TGTAGGTTATTCAACTTAAG+GGG + Chr3:58938161-58938180 MsG0380014728.01.T01:intron 30.0%
TTCTCAAGTGCTTGATAAAT+AGG - Chr3:58940237-58940256 None:intergenic 30.0%
TTTACTTTGAGCTTCTTTAC+AGG + Chr3:58941109-58941128 MsG0380014728.01.T01:intron 30.0%
! ATGATTTTCATACCTATCCT+TGG - Chr3:58939405-58939424 None:intergenic 30.0%
!! CTTACATAAGTTCTAAGGAA+GGG + Chr3:58941789-58941808 MsG0380014728.01.T01:CDS 30.0%
!! GTGTAGCTTTGTTAAAACTA+TGG + Chr3:58937997-58938016 MsG0380014728.01.T01:intron 30.0%
!! TCTTACATAAGTTCTAAGGA+AGG + Chr3:58941788-58941807 MsG0380014728.01.T01:CDS 30.0%
!! TGTGTCATTTGCATCATAAA+TGG - Chr3:58940553-58940572 None:intergenic 30.0%
AAACTATACCAACACTTCAG+CGG + Chr3:58938521-58938540 MsG0380014728.01.T01:intron 35.0%
AATGTTAGACTAGTAAGGAC+AGG + Chr3:58939488-58939507 MsG0380014728.01.T01:intron 35.0%
AATTGCAGAAGATCTTACCT+GGG + Chr3:58940266-58940285 MsG0380014728.01.T01:CDS 35.0%
ACATGCAAAAACAGCTAGAA+TGG + Chr3:58941180-58941199 MsG0380014728.01.T01:CDS 35.0%
AGGAAGTTTACAAGGTTCAA+TGG + Chr3:58940103-58940122 MsG0380014728.01.T01:CDS 35.0%
AGTTGTAAGCTCTATAGAAG+AGG + Chr3:58940083-58940102 MsG0380014728.01.T01:CDS 35.0%
ATCCAGACACAAATTCACAA+GGG - Chr3:58938378-58938397 None:intergenic 35.0%
CAAGCACTTGAGAAAGTTAA+CGG + Chr3:58940243-58940262 MsG0380014728.01.T01:CDS 35.0%
CATAGCAAACTGAAGAAACT+CGG - Chr3:58939527-58939546 None:intergenic 35.0%
CATAGCAAGTTGCTAACAAA+AGG - Chr3:58939232-58939251 None:intergenic 35.0%
CATGTTTCTCAGCATACTTT+CGG - Chr3:58941637-58941656 None:intergenic 35.0%
CATTTGAGAACAGTGAGATT+AGG + Chr3:58937794-58937813 MsG0380014728.01.T01:intron 35.0%
CGAGGCAAAAATGTAGAATT+CGG - Chr3:58938917-58938936 None:intergenic 35.0%
CTTTACAGGTGATGAATGAA+GGG + Chr3:58941123-58941142 MsG0380014728.01.T01:intron 35.0%
GAGGCAAAAATGTAGAATTC+GGG - Chr3:58938916-58938935 None:intergenic 35.0%
GGAAGTTTACAAGGTTCAAT+GGG + Chr3:58940104-58940123 MsG0380014728.01.T01:CDS 35.0%
GTCCCCAAAATATAAATCCA+AGG + Chr3:58939385-58939404 MsG0380014728.01.T01:CDS 35.0%
GTGAAAGTGAATGCAAACAT+TGG + Chr3:58940051-58940070 MsG0380014728.01.T01:CDS 35.0%
TAAGCAAGGAATCATTACTG+AGG + Chr3:58939891-58939910 MsG0380014728.01.T01:CDS 35.0%
TAGTACATCTGAGTGAATCT+TGG - Chr3:58939868-58939887 None:intergenic 35.0%
TATCCAGACACAAATTCACA+AGG - Chr3:58938379-58938398 None:intergenic 35.0%
TCTGTCGTGTCAAAAAGATT+GGG + Chr3:58938435-58938454 MsG0380014728.01.T01:intron 35.0%
TCTTTACAGGTGATGAATGA+AGG + Chr3:58941122-58941141 MsG0380014728.01.T01:intron 35.0%
TGATACAACACTGACACATT+TGG + Chr3:58938568-58938587 MsG0380014728.01.T01:intron 35.0%
TGCATGTTTGAATTAACGGT+GGG - Chr3:58938046-58938065 None:intergenic 35.0%
TTCTATAGAGCTTACAACTG+CGG - Chr3:58940082-58940101 None:intergenic 35.0%
TTCTGTCGTGTCAAAAAGAT+TGG + Chr3:58938434-58938453 MsG0380014728.01.T01:intron 35.0%
TTGATTGAACAAGCTGAACA+AGG + Chr3:58940306-58940325 MsG0380014728.01.T01:CDS 35.0%
TTTGCATCATAAATGGATCC+AGG - Chr3:58940546-58940565 None:intergenic 35.0%
! CGAATTCTACATTTTTGCCT+CGG + Chr3:58938915-58938934 MsG0380014728.01.T01:CDS 35.0%
! GAAAGTATGCTGAGAAACAT+GGG + Chr3:58941636-58941655 MsG0380014728.01.T01:CDS 35.0%
! GTTTTGTCTGCATTAGTTGT+TGG - Chr3:58939037-58939056 None:intergenic 35.0%
! TGTTTTTCCTGAAGTTAGCA+TGG + Chr3:58939672-58939691 MsG0380014728.01.T01:intron 35.0%
! TTGTTCAGCTTGTTCAATCA+AGG - Chr3:58940307-58940326 None:intergenic 35.0%
! TTTGATAACTATGACACCAG+TGG + Chr3:58939363-58939382 MsG0380014728.01.T01:CDS 35.0%
!! ATTTATATTTTGGGGACCAC+TGG - Chr3:58939382-58939401 None:intergenic 35.0%
!! TCATGTTTTTATTCTCGCCA+TGG + Chr3:58939421-58939440 MsG0380014728.01.T01:intron 35.0%
!! TTTTCAGGAATCTTGTGCAT+TGG - Chr3:58941161-58941180 None:intergenic 35.0%
!!! AGCTGTTTTTGCATGTTTTC+AGG - Chr3:58941176-58941195 None:intergenic 35.0%
!!! ATCTTTTTTGTAAAGGGGCA+AGG + Chr3:58938279-58938298 MsG0380014728.01.T01:intron 35.0%
AACTATACCAACACTTCAGC+GGG + Chr3:58938522-58938541 MsG0380014728.01.T01:intron 40.0%
AGAATTTCGCTTATGAGCAC+TGG + Chr3:58940457-58940476 MsG0380014728.01.T01:CDS 40.0%
AGGGAGAAATTGAGTTTGCA+TGG + Chr3:58937814-58937833 MsG0380014728.01.T01:intron 40.0%
AGGTCTTAAACCATCACCAA+TGG - Chr3:58940526-58940545 None:intergenic 40.0%
ATGCTGAGAAACATGGGTAT+GGG + Chr3:58941642-58941661 MsG0380014728.01.T01:CDS 40.0%
CAAGTCGTTCATGAAGAAAG+TGG + Chr3:58939285-58939304 MsG0380014728.01.T01:CDS 40.0%
CAGATGTACTATGCTAAGCA+AGG + Chr3:58939877-58939896 MsG0380014728.01.T01:CDS 40.0%
CATCTGCAATCAGTATGATG+TGG + Chr3:58940494-58940513 MsG0380014728.01.T01:CDS 40.0%
CTCTTCAAATGCTTGGAAGA+AGG + Chr3:58938955-58938974 MsG0380014728.01.T01:CDS 40.0%
CTGCTCTATGAAGATAACTG+AGG + Chr3:58941607-58941626 MsG0380014728.01.T01:CDS 40.0%
GAAGAAAATCAGGAGAAGCA+GGG - Chr3:58939084-58939103 None:intergenic 40.0%
GAAGGAAGTGGAAGAAAATC+AGG - Chr3:58939094-58939113 None:intergenic 40.0%
GAATTGCAGAAGATCTTACC+TGG + Chr3:58940265-58940284 MsG0380014728.01.T01:CDS 40.0%
GAATTTCGCTTATGAGCACT+GGG + Chr3:58940458-58940477 MsG0380014728.01.T01:CDS 40.0%
GAGATTCGAATTTCGATGGA+TGG + Chr3:58941472-58941491 MsG0380014728.01.T01:CDS 40.0%
GAGGATCAATTCATGCAAAG+TGG + Chr3:58940415-58940434 MsG0380014728.01.T01:CDS 40.0%
GATCCAATGACAAAGCAAAC+TGG - Chr3:58941499-58941518 None:intergenic 40.0%
GGAACTTTGATTGAGAAGCA+TGG - Chr3:58938895-58938914 None:intergenic 40.0%
GGGGCAATATCAGTTGTTAA+AGG - Chr3:58941236-58941255 None:intergenic 40.0%
GTCATACGCTTTGCAGTTAA+AGG - Chr3:58940378-58940397 None:intergenic 40.0%
GTGACTCCAAAAGAACATCT+CGG + Chr3:58941329-58941348 MsG0380014728.01.T01:CDS 40.0%
GTGCATGTTTGAATTAACGG+TGG - Chr3:58938047-58938066 None:intergenic 40.0%
TAAATAGGTACAGTCCCAAC+TGG - Chr3:58940222-58940241 None:intergenic 40.0%
TAACTCCAAGTGCTTCTTGT+TGG - Chr3:58940001-58940020 None:intergenic 40.0%
TATGATGTGGCACTATCCAT+TGG + Chr3:58940507-58940526 MsG0380014728.01.T01:CDS 40.0%
TATGCTGAGAAACATGGGTA+TGG + Chr3:58941641-58941660 MsG0380014728.01.T01:CDS 40.0%
TCCAGACACAAATTCACAAG+GGG - Chr3:58938377-58938396 None:intergenic 40.0%
TGACTCCAAAAGAACATCTC+GGG + Chr3:58941330-58941349 MsG0380014728.01.T01:CDS 40.0%
TGCTATTCCATGCTAACTTC+AGG - Chr3:58939682-58939701 None:intergenic 40.0%
TGTCAGTGTTGTATCAGTGT+CGG - Chr3:58938564-58938583 None:intergenic 40.0%
TTAACAACTGATATTGCCCC+TGG + Chr3:58941236-58941255 MsG0380014728.01.T01:CDS 40.0%
TTAACTGCAAAGCGTATGAC+CGG + Chr3:58940378-58940397 MsG0380014728.01.T01:CDS 40.0%
TTCTCCTTGTGTCAAAAGCT+CGG - Chr3:58940586-58940605 None:intergenic 40.0%
TTGTCTGCATTAGTTGTTGG+AGG - Chr3:58939034-58939053 None:intergenic 40.0%
TTTGGTCAATCGAGAACATG+TGG - Chr3:58939555-58939574 None:intergenic 40.0%
! AAAGGACCAAGAGTGTAGAA+AGG - Chr3:58941218-58941237 None:intergenic 40.0%
! AACGGTGTGCTTCTTTTGTT+TGG - Chr3:58939059-58939078 None:intergenic 40.0%
! ACATCGGTTGTTTGCAAGAA+TGG + Chr3:58938866-58938885 MsG0380014728.01.T01:CDS 40.0%
! ATCCAGTCTTTGCGCAATTT+TGG - Chr3:58939820-58939839 None:intergenic 40.0%
! CAAAGAGCACAAAAGAATCC+AGG + Chr3:58939131-58939150 MsG0380014728.01.T01:CDS 40.0%
! CGAAAGTATGCTGAGAAACA+TGG + Chr3:58941635-58941654 MsG0380014728.01.T01:CDS 40.0%
! CTGGATTCTTTTGTGCTCTT+TGG - Chr3:58939133-58939152 None:intergenic 40.0%
! GATAGTCGGAAGGAACTTTT+TGG + Chr3:58940029-58940048 MsG0380014728.01.T01:CDS 40.0%
! TCCAGTCTTTGCGCAATTTT+GGG - Chr3:58939819-58939838 None:intergenic 40.0%
! TTTGTAGTTCTGCGTTGAGA+TGG + Chr3:58938823-58938842 MsG0380014728.01.T01:intron 40.0%
!! ATTGGTGATGGTTTAAGACC+TGG + Chr3:58940525-58940544 MsG0380014728.01.T01:CDS 40.0%
!! CATTCTTAGGGGTTTTGATG+TGG + Chr3:58938629-58938648 MsG0380014728.01.T01:intron 40.0%
!! GCATCACAATATGGCTTGTT+TGG + Chr3:58938246-58938265 MsG0380014728.01.T01:intron 40.0%
!! GCTATTGGTGCTGCAAATAT+CGG + Chr3:58941278-58941297 MsG0380014728.01.T01:CDS 40.0%
AACAGAGATGATGTGAAGGC+TGG + Chr3:58941359-58941378 MsG0380014728.01.T01:CDS 45.0%
AACATCCACACGCTCAAGAA+TGG + Chr3:58941429-58941448 MsG0380014728.01.T01:CDS 45.0%
AAGTTCCTTCCGACTATCGT+AGG - Chr3:58940027-58940046 None:intergenic 45.0%
ACAGTCATGGATCTCTCAAC+TGG + Chr3:58940147-58940166 MsG0380014728.01.T01:CDS 45.0%
ACATCCACACGCTCAAGAAT+GGG + Chr3:58941430-58941449 MsG0380014728.01.T01:CDS 45.0%
ACATCCATGAAACTCGAGAG+TGG + Chr3:58940175-58940194 MsG0380014728.01.T01:CDS 45.0%
ACCCCTTGTGAATTTGTGTC+TGG + Chr3:58938373-58938392 MsG0380014728.01.T01:intron 45.0%
ACGATCAGTGGAGAACAACA+TGG + Chr3:58941734-58941753 MsG0380014728.01.T01:CDS 45.0%
ACTCTCGAGTTTCATGGATG+TGG - Chr3:58940176-58940195 None:intergenic 45.0%
ACTGAAGAAACTCGGAGACA+AGG - Chr3:58939519-58939538 None:intergenic 45.0%
ACTTCTGACCTCACAAACTC+TGG - Chr3:58939952-58939971 None:intergenic 45.0%
AGAACTCACTCGTAGAGCAT+GGG + Chr3:58940602-58940621 MsG0380014728.01.T01:CDS 45.0%
AGATCCACTCTCGAGTTTCA+TGG - Chr3:58940182-58940201 None:intergenic 45.0%
AGCAGTGGTGAATTGAACAG+TGG - Chr3:58940834-58940853 None:intergenic 45.0%
AGCATGGGAAAAGGATGTAC+AGG + Chr3:58940617-58940636 MsG0380014728.01.T01:CDS 45.0%
AGCGTGCATGTTTGGATTTG+TGG + Chr3:58937933-58937952 MsG0380014728.01.T01:intron 45.0%
AGCTCCATCTTTCATGGCTT+TGG + Chr3:58938982-58939001 MsG0380014728.01.T01:CDS 45.0%
AGGCGAGATTCGAATTTCGA+TGG + Chr3:58941468-58941487 MsG0380014728.01.T01:CDS 45.0%
AGGTGATGTGATCGTAACCA+GGG - Chr3:58941256-58941275 None:intergenic 45.0%
AGGTTCAATGGGCAACTATG+TGG + Chr3:58940115-58940134 MsG0380014728.01.T01:CDS 45.0%
ATGACCGGAATAGTTTCGAG+AGG + Chr3:58940393-58940412 MsG0380014728.01.T01:CDS 45.0%
ATGGGATGATGCCTTAAGCA+AGG + Chr3:58941448-58941467 MsG0380014728.01.T01:CDS 45.0%
ATTGGATCCAATGACAGCCA+TGG + Chr3:58941511-58941530 MsG0380014728.01.T01:CDS 45.0%
ATTTGCAGCACCAATAGCAG+AGG - Chr3:58941276-58941295 None:intergenic 45.0%
CCAAGTGCTTCTTGTTGGAA+GGG - Chr3:58939996-58940015 None:intergenic 45.0%
CCAGTGATTGAGAGAGTGAA+CGG - Chr3:58937585-58937604 None:intergenic 45.0%
CTTCTGACCTCACAAACTCT+GGG - Chr3:58939951-58939970 None:intergenic 45.0%
GACAAGTGAACTCGTCGAAA+TGG - Chr3:58939327-58939346 None:intergenic 45.0%
GAGTTAGAGCCTACGATAGT+CGG + Chr3:58940015-58940034 MsG0380014728.01.T01:CDS 45.0%
GATCACATCACCTCTGCTAT+TGG + Chr3:58941263-58941282 MsG0380014728.01.T01:CDS 45.0%
GATGAAACATTGCCGTCAGA+AGG + Chr3:58941542-58941561 MsG0380014728.01.T01:CDS 45.0%
GATTACTTCACCATCCATGC+AGG + Chr3:58940333-58940352 MsG0380014728.01.T01:CDS 45.0%
GCCAAACAGAGATGATGTGA+AGG + Chr3:58941355-58941374 MsG0380014728.01.T01:CDS 45.0%
GCCTTCACATCATCTCTGTT+TGG - Chr3:58941359-58941378 None:intergenic 45.0%
GGAACTAGCTCCATCTTTCA+TGG + Chr3:58938976-58938995 MsG0380014728.01.T01:CDS 45.0%
GGAAGAAAATCAGGAGAAGC+AGG - Chr3:58939085-58939104 None:intergenic 45.0%
GGGATATCGACAATGATGTG+TGG + Chr3:58938455-58938474 MsG0380014728.01.T01:intron 45.0%
GGTACCAAAGCCATGAAAGA+TGG - Chr3:58938989-58939008 None:intergenic 45.0%
GGTGCATGCTAATGTGACAT+CGG + Chr3:58938850-58938869 MsG0380014728.01.T01:CDS 45.0%
GGTTCAATGGGCAACTATGT+GGG + Chr3:58940116-58940135 MsG0380014728.01.T01:CDS 45.0%
GTTCAATGGGCAACTATGTG+GGG + Chr3:58940117-58940136 MsG0380014728.01.T01:CDS 45.0%
TCCAAGTGCTTCTTGTTGGA+AGG - Chr3:58939997-58940016 None:intergenic 45.0%
TCCCAAAATTGCGCAAAGAC+TGG + Chr3:58939815-58939834 MsG0380014728.01.T01:CDS 45.0%
TCCTCCTCTCGAAACTATTC+CGG - Chr3:58940400-58940419 None:intergenic 45.0%
TCGAATGTCAATGTGGCTCT+AGG - Chr3:58939010-58939029 None:intergenic 45.0%
TGCGCAAAGACTGGATTGAT+AGG + Chr3:58939824-58939843 MsG0380014728.01.T01:CDS 45.0%
TGCTGAGAAACATGGGTATG+GGG + Chr3:58941643-58941662 MsG0380014728.01.T01:CDS 45.0%
TGGAGGATCGAATGTCAATG+TGG - Chr3:58939017-58939036 None:intergenic 45.0%
TTCGAATCTCGCCTTGCTTA+AGG - Chr3:58941462-58941481 None:intergenic 45.0%
TTCTTCATGAACGACTTGCC+TGG - Chr3:58939283-58939302 None:intergenic 45.0%
TTGAGCGTGTGGATGTTGTT+TGG - Chr3:58941426-58941445 None:intergenic 45.0%
TTGGACGCTCTTCAAATGCT+TGG + Chr3:58938948-58938967 MsG0380014728.01.T01:CDS 45.0%
TTGTGCATTGGAACATGTCC+TGG - Chr3:58941149-58941168 None:intergenic 45.0%
TTTCGACGAGTTCACTTGTC+TGG + Chr3:58939327-58939346 MsG0380014728.01.T01:CDS 45.0%
! ATCTTACCTGGGAGGTTTTC+AGG + Chr3:58940277-58940296 MsG0380014728.01.T01:CDS 45.0%
! GCAGATAAGACCAGCTTTTC+AGG + Chr3:58937618-58937637 MsG0380014728.01.T01:five_prime_UTR 45.0%
! GGACCAGTTTGCTTTGTCAT+TGG + Chr3:58941493-58941512 MsG0380014728.01.T01:CDS 45.0%
! TCTTACCTGGGAGGTTTTCA+GGG + Chr3:58940278-58940297 MsG0380014728.01.T01:CDS 45.0%
! TTTGCCGAGCTTTTGACACA+AGG + Chr3:58940579-58940598 MsG0380014728.01.T01:CDS 45.0%
!! AAGAAGTACTCCTGCATGGA+TGG - Chr3:58940346-58940365 None:intergenic 45.0%
!! ACCTAAGAAGTACTCCTGCA+TGG - Chr3:58940350-58940369 None:intergenic 45.0%
!! CTTTGGAAAGCACTCTTCGA+AGG - Chr3:58939116-58939135 None:intergenic 45.0%
!! GTTGAGGAAGCTTTGAAGCA+GGG + Chr3:58941671-58941690 MsG0380014728.01.T01:CDS 45.0%
!! TCCATGCAGGAGTACTTCTT+AGG + Chr3:58940346-58940365 MsG0380014728.01.T01:CDS 45.0%
!! TGTTGAGGAAGCTTTGAAGC+AGG + Chr3:58941670-58941689 MsG0380014728.01.T01:CDS 45.0%
!! TTGAGGAAGCTTTGAAGCAG+GGG + Chr3:58941672-58941691 MsG0380014728.01.T01:CDS 45.0%
!!! GTTCGGCTTTTCTGAGATGA+AGG + Chr3:58938335-58938354 MsG0380014728.01.T01:intron 45.0%
!! TTAAATATTTAAAAAAAATG+AGG + Chr3:58938203-58938222 MsG0380014728.01.T01:intron 5.0%
!!! ATATATATATTATCAAATTT+TGG + Chr3:58940642-58940661 MsG0380014728.01.T01:intron 5.0%
ACAACTGGATTCAGCAGCAG+TGG - Chr3:58940849-58940868 None:intergenic 50.0%
ACCGGAATAGTTTCGAGAGG+AGG + Chr3:58940396-58940415 MsG0380014728.01.T01:CDS 50.0%
AGCTCAACCCAGAGTTTGTG+AGG + Chr3:58939941-58939960 MsG0380014728.01.T01:CDS 50.0%
AGGTACAGTCCCAACTGGTA+CGG - Chr3:58940217-58940236 None:intergenic 50.0%
ATACCAACACTTCAGCGGGA+AGG + Chr3:58938526-58938545 MsG0380014728.01.T01:intron 50.0%
ATCAGGAGAAGCAGGGTCAA+CGG - Chr3:58939077-58939096 None:intergenic 50.0%
CACTCGTAGAGCATGGGAAA+AGG + Chr3:58940608-58940627 MsG0380014728.01.T01:CDS 50.0%
CACTCTTCGAAGGAAGGAAG+TGG - Chr3:58939106-58939125 None:intergenic 50.0%
CCGTTCACTCTCTCAATCAC+TGG + Chr3:58937582-58937601 MsG0380014728.01.T01:five_prime_UTR 50.0%
CGGCAATGTTTCATCGTGGA+AGG - Chr3:58941537-58941556 None:intergenic 50.0%
CTGACGGCAATGTTTCATCG+TGG - Chr3:58941541-58941560 None:intergenic 50.0%
GAACAACATGGTGAAGCTGG+TGG + Chr3:58941746-58941765 MsG0380014728.01.T01:CDS 50.0%
GAGAACTCACTCGTAGAGCA+TGG + Chr3:58940601-58940620 MsG0380014728.01.T01:CDS 50.0%
GAGAGAGAGACCTGAAAAGC+TGG - Chr3:58937631-58937650 None:intergenic 50.0%
GAGGTGATGTGATCGTAACC+AGG - Chr3:58941257-58941276 None:intergenic 50.0%
GCACATTTCTGCTCGATGTG+TGG + Chr3:58941575-58941594 MsG0380014728.01.T01:CDS 50.0%
GCTGCGAAGAAAACGATCAG+TGG + Chr3:58941722-58941741 MsG0380014728.01.T01:CDS 50.0%
GGAGAACAACATGGTGAAGC+TGG + Chr3:58941743-58941762 MsG0380014728.01.T01:CDS 50.0%
GGTGATGTGATCGTAACCAG+GGG - Chr3:58941255-58941274 None:intergenic 50.0%
GTGGCACTATCCATTGGTGA+TGG + Chr3:58940513-58940532 MsG0380014728.01.T01:CDS 50.0%
TAGAGCCTACGATAGTCGGA+AGG + Chr3:58940019-58940038 MsG0380014728.01.T01:CDS 50.0%
TCATCCCATTCTTGAGCGTG+TGG - Chr3:58941437-58941456 None:intergenic 50.0%
TGAGAAACATGGGTATGGGG+AGG + Chr3:58941646-58941665 MsG0380014728.01.T01:CDS 50.0%
TGCAGAAGATCTTACCTGGG+AGG + Chr3:58940269-58940288 MsG0380014728.01.T01:CDS 50.0%
TGTTTCATCGTGGAAGGCCA+TGG - Chr3:58941531-58941550 None:intergenic 50.0%
! ATTGCCGTCAGAAGGTGCAA+AGG + Chr3:58941550-58941569 MsG0380014728.01.T01:CDS 50.0%
! GAAGCGCCTTTCTACACTCT+TGG + Chr3:58941209-58941228 MsG0380014728.01.T01:CDS 50.0%
! GGCAACCCGAGATGTTCTTT+TGG - Chr3:58941338-58941357 None:intergenic 50.0%
! TTGCCTCGGTTTGACGTTGT+TGG + Chr3:58938929-58938948 MsG0380014728.01.T01:CDS 50.0%
!! CCCTTCCAACAAGAAGCACT+TGG + Chr3:58939993-58940012 MsG0380014728.01.T01:CDS 50.0%
!! GGAAAGCACTCTTCGAAGGA+AGG - Chr3:58939112-58939131 None:intergenic 50.0%
CAGGTGATGAATGAAGGGCC+AGG + Chr3:58941128-58941147 MsG0380014728.01.T01:intron 55.0%
CGTCCAACAACGTCAAACCG+AGG - Chr3:58938935-58938954 None:intergenic 55.0%
GCAACTCTGCCGTACCAGTT+GGG + Chr3:58940205-58940224 MsG0380014728.01.T01:CDS 55.0%
GCCACCTTTGCACCTTCTGA+CGG - Chr3:58941557-58941576 None:intergenic 55.0%
GCTGCAAATATCGGCGCACT+TGG + Chr3:58941287-58941306 MsG0380014728.01.T01:CDS 55.0%
GTGAGGTCAGAAGTTGCTCG+TGG + Chr3:58939958-58939977 MsG0380014728.01.T01:CDS 55.0%
GTGGGGAGCTGATACAGTCA+TGG + Chr3:58940134-58940153 MsG0380014728.01.T01:CDS 55.0%
GTTCTGCGTTGAGATGGCGT+CGG + Chr3:58938829-58938848 MsG0380014728.01.T01:intron 55.0%
TGGAAGGCCATGGCTGTCAT+TGG - Chr3:58941521-58941540 None:intergenic 55.0%
TGGGTATGGGGAGGATGTTG+AGG + Chr3:58941655-58941674 MsG0380014728.01.T01:CDS 55.0%
ACGCCTTCCCGCTGAAGTGT+TGG - Chr3:58938532-58938551 None:intergenic 60.0%
CGCAACTCTGCCGTACCAGT+TGG + Chr3:58940204-58940223 MsG0380014728.01.T01:CDS 60.0%
GGTGTCCCTGAAAACCTCCC+AGG - Chr3:58940286-58940305 None:intergenic 60.0%
! GCCGTCAGAAGGTGCAAAGG+TGG + Chr3:58941553-58941572 MsG0380014728.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr3 gene 58937579 58941814 58937579 ID=MsG0380014728.01;Name=MsG0380014728.01
Chr3 mRNA 58937579 58941814 58937579 ID=MsG0380014728.01.T01;Parent=MsG0380014728.01;Name=MsG0380014728.01.T01;_AED=0.49;_eAED=0.49;_QI=73|1|0.8|1|0.75|0.6|5|0|649
Chr3 exon 58937579 58937639 58937579 ID=MsG0380014728.01.T01:exon:11410;Parent=MsG0380014728.01.T01
Chr3 exon 58938830 58939152 58938830 ID=MsG0380014728.01.T01:exon:11411;Parent=MsG0380014728.01.T01
Chr3 exon 58939284 58939411 58939284 ID=MsG0380014728.01.T01:exon:11412;Parent=MsG0380014728.01.T01
Chr3 exon 58939812 58940638 58939812 ID=MsG0380014728.01.T01:exon:11413;Parent=MsG0380014728.01.T01
Chr3 exon 58941131 58941814 58941131 ID=MsG0380014728.01.T01:exon:11414;Parent=MsG0380014728.01.T01
Chr3 five_prime_UTR 58937579 58937639 58937579 ID=MsG0380014728.01.T01:five_prime_utr;Parent=MsG0380014728.01.T01
Chr3 five_prime_UTR 58938830 58938841 58938830 ID=MsG0380014728.01.T01:five_prime_utr;Parent=MsG0380014728.01.T01
Chr3 CDS 58938842 58939152 58938842 ID=MsG0380014728.01.T01:cds;Parent=MsG0380014728.01.T01
Chr3 CDS 58939284 58939411 58939284 ID=MsG0380014728.01.T01:cds;Parent=MsG0380014728.01.T01
Chr3 CDS 58939812 58940638 58939812 ID=MsG0380014728.01.T01:cds;Parent=MsG0380014728.01.T01
Chr3 CDS 58941131 58941814 58941131 ID=MsG0380014728.01.T01:cds;Parent=MsG0380014728.01.T01
Gene Sequence

>MsG0380014728.01.T01

ATGGCGTCGGTGCATGCTAATGTGACATCGGTTGTTTGCAAGAATGGTAACCATGCTTCTCAATCAAAGTTCCCGAATTCTACATTTTTGCCTCGGTTTGACGTTGTTGGACGCTCTTCAAATGCTTGGAAGAAGGAACTAGCTCCATCTTTCATGGCTTTGGTACCTAGAGCCACATTGACATTCGATCCTCCAACAACTAATGCAGACAAAACCAAACAAAAGAAGCACACCGTTGACCCTGCTTCTCCTGATTTTCTTCCACTTCCTTCCTTCGAAGAGTGCTTTCCAAAGAGCACAAAAGAATCCAGGCAAGTCGTTCATGAAGAAAGTGGTCATGTGCTCAAAGTTCCATTTCGACGAGTTCACTTGTCTGGTGATGAATCACACTTTGATAACTATGACACCAGTGGTCCCCAAAATATAAATCCAAGGATAGGACTCCCAAAATTGCGCAAAGACTGGATTGATAGGAGAGAAAAAATCGGTGCTCCAAGATTCACTCAGATGTACTATGCTAAGCAAGGAATCATTACTGAGGAGATGCTTTATTGCGCGACTCGCGAGAAGCTCAACCCAGAGTTTGTGAGGTCAGAAGTTGCTCGTGGACGAGCTATCATCCCTTCCAACAAGAAGCACTTGGAGTTAGAGCCTACGATAGTCGGAAGGAACTTTTTGGTGAAAGTGAATGCAAACATTGGAAATTCCGCAGTTGTAAGCTCTATAGAAGAGGAAGTTTACAAGGTTCAATGGGCAACTATGTGGGGAGCTGATACAGTCATGGATCTCTCAACTGGTCGCCACATCCATGAAACTCGAGAGTGGATCTTGCGCAACTCTGCCGTACCAGTTGGGACTGTACCTATTTATCAAGCACTTGAGAAAGTTAACGGAATTGCAGAAGATCTTACCTGGGAGGTTTTCAGGGACACCTTGATTGAACAAGCTGAACAAGGTGTTGATTACTTCACCATCCATGCAGGAGTACTTCTTAGGTATATTCCTTTAACTGCAAAGCGTATGACCGGAATAGTTTCGAGAGGAGGATCAATTCATGCAAAGTGGTGCTTAGCTTATCACAAAGAGAATTTCGCTTATGAGCACTGGGATGACATACTCGACATCTGCAATCAGTATGATGTGGCACTATCCATTGGTGATGGTTTAAGACCTGGATCCATTTATGATGCAAATGACACAGCTCAGTTTGCCGAGCTTTTGACACAAGGAGAACTCACTCGTAGAGCATGGGAAAAGGATGTACAGGTGATGAATGAAGGGCCAGGACATGTTCCAATGCACAAGATTCCTGAAAACATGCAAAAACAGCTAGAATGGTGTAATGAAGCGCCTTTCTACACTCTTGGTCCTTTAACAACTGATATTGCCCCTGGTTACGATCACATCACCTCTGCTATTGGTGCTGCAAATATCGGCGCACTTGGTACTGCTCTTCTCTGTTATGTGACTCCAAAAGAACATCTCGGGTTGCCAAACAGAGATGATGTGAAGGCTGGAGTTATAGCTTACAAGATTGCTGCTCATGCTGCTGATTTAGCCAAACAACATCCACACGCTCAAGAATGGGATGATGCCTTAAGCAAGGCGAGATTCGAATTTCGATGGATGGACCAGTTTGCTTTGTCATTGGATCCAATGACAGCCATGGCCTTCCACGATGAAACATTGCCGTCAGAAGGTGCAAAGGTGGCACATTTCTGCTCGATGTGTGGTCCTAAATTCTGCTCTATGAAGATAACTGAGGATGTCCGAAAGTATGCTGAGAAACATGGGTATGGGGAGGATGTTGAGGAAGCTTTGAAGCAGGGGATGAATGCTATGAGTGCAGAATTTCTTGCTGCGAAGAAAACGATCAGTGGAGAACAACATGGTGAAGCTGGTGGAGAGATTTACTTGCCAGAATCTTACATAAGTTCTAAGGAAGGGTAA

Protein sequence

>MsG0380014728.01.T01

MASVHANVTSVVCKNGNHASQSKFPNSTFLPRFDVVGRSSNAWKKELAPSFMALVPRATLTFDPPTTNADKTKQKKHTVDPASPDFLPLPSFEECFPKSTKESRQVVHEESGHVLKVPFRRVHLSGDESHFDNYDTSGPQNINPRIGLPKLRKDWIDRREKIGAPRFTQMYYAKQGIITEEMLYCATREKLNPEFVRSEVARGRAIIPSNKKHLELEPTIVGRNFLVKVNANIGNSAVVSSIEEEVYKVQWATMWGADTVMDLSTGRHIHETREWILRNSAVPVGTVPIYQALEKVNGIAEDLTWEVFRDTLIEQAEQGVDYFTIHAGVLLRYIPLTAKRMTGIVSRGGSIHAKWCLAYHKENFAYEHWDDILDICNQYDVALSIGDGLRPGSIYDANDTAQFAELLTQGELTRRAWEKDVQVMNEGPGHVPMHKIPENMQKQLEWCNEAPFYTLGPLTTDIAPGYDHITSAIGAANIGALGTALLCYVTPKEHLGLPNRDDVKAGVIAYKIAAHAADLAKQHPHAQEWDDALSKARFEFRWMDQFALSLDPMTAMAFHDETLPSEGAKVAHFCSMCGPKFCSMKITEDVRKYAEKHGYGEDVEEALKQGMNAMSAEFLAAKKTISGEQHGEAGGEIYLPESYISSKEG*