AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480018252.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480018252.01.T01 MTR_4g008160 94.071 253 5 1 135 387 1 243 5.56e-173 482
MsG0480018252.01.T01 MTR_1g022385 82.101 257 36 1 131 387 29 275 2.50e-154 436
MsG0480018252.01.T01 MTR_2g038250 82.869 251 33 1 137 387 4 244 1.40e-152 430
MsG0480018252.01.T01 MTR_7g059170 44.490 245 125 2 143 387 13 246 6.78e-68 215
MsG0480018252.01.T01 MTR_1g022375 76.250 80 19 0 298 377 77 156 2.14e-37 133
MsG0480018252.01.T01 MTR_1g108785 58.621 58 18 4 328 379 2 59 5.39e-12 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480018252.01.T01 AT3G13580 81.200 250 37 1 138 387 5 244 1.30e-150 426
MsG0480018252.01.T01 AT3G13580 81.200 250 37 1 138 387 5 244 1.30e-150 426
MsG0480018252.01.T01 AT3G13580 81.200 250 37 1 138 387 5 244 1.30e-150 426
MsG0480018252.01.T01 AT3G13580 81.200 250 37 1 138 387 5 244 1.30e-150 426
MsG0480018252.01.T01 AT3G13580 81.200 250 37 1 138 387 5 244 1.30e-150 426
MsG0480018252.01.T01 AT3G13580 81.200 250 37 1 138 387 5 244 1.30e-150 426
MsG0480018252.01.T01 AT3G13580 81.200 250 37 1 138 387 5 244 1.30e-150 426
MsG0480018252.01.T01 AT3G13580 81.200 250 37 1 138 387 5 244 1.30e-150 426
MsG0480018252.01.T01 AT3G13580 81.200 250 37 1 138 387 5 244 1.30e-150 426
MsG0480018252.01.T01 AT2G01250 82.000 250 35 1 138 387 3 242 2.07e-148 420
MsG0480018252.01.T01 AT2G44120 78.400 250 44 1 138 387 3 242 2.81e-142 404
MsG0480018252.01.T01 AT2G44120 77.953 254 45 2 134 387 5 247 3.04e-142 404
MsG0480018252.01.T01 AT2G01250 75.676 185 35 1 138 322 3 177 1.08e-92 276
MsG0480018252.01.T01 AT1G80750 40.551 254 138 3 137 387 4 247 6.49e-55 181

Find 89 sgRNAs with CRISPR-Local

Find 342 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGTTGCTTTGTTAACTTTA+AGG 0.072962 4:+2328831 None:intergenic
TCCCTTACACTCTTCAAATT+TGG 0.097727 4:+2328677 None:intergenic
CAATTGGGTATCTGAAATTT+TGG 0.126096 4:-2328207 MsG0480018252.01.T01:three_prime_UTR
TCATCATGTTCCATTGATTT+AGG 0.229086 4:+2333464 None:intergenic
GATGATTTCTCGCTCCTTCT+TGG 0.260140 4:-2333677 MsG0480018252.01.T01:CDS
CAAAGAGACACTACTTCTTT+TGG 0.265186 4:-2333437 MsG0480018252.01.T01:intron
GGCTATAATTGATGTTGATT+TGG 0.277434 4:-2333630 MsG0480018252.01.T01:CDS
GTTGAGCCTTATGTGACTTA+TGG 0.277993 4:-2328791 MsG0480018252.01.T01:CDS
CAAAAGAAGTAGTGTCTCTT+TGG 0.279892 4:+2333438 None:intergenic
CCCTTACACTCTTCAAATTT+GGG 0.292487 4:+2328678 None:intergenic
AAACCGTCAAAGATAGCTTT+TGG 0.298033 4:-2333812 MsG0480018252.01.T01:CDS
GGCTTTAGATCAAGATCAAT+TGG 0.333078 4:-2328223 MsG0480018252.01.T01:three_prime_UTR
GCTATAATTGATGTTGATTT+GGG 0.360870 4:-2333629 MsG0480018252.01.T01:CDS
TTGAGCCTTATGTGACTTAT+GGG 0.362158 4:-2328790 MsG0480018252.01.T01:intron
CTGTGTTGAAGAAGCAGAAC+AGG 0.363263 4:-2330346 MsG0480018252.01.T01:CDS
CCTTTGGCCGTTCAAGCTTA+AGG 0.366667 4:-2328400 MsG0480018252.01.T01:CDS
AGGAAGCAAACAACTTCCTT+TGG 0.396409 4:-2328416 MsG0480018252.01.T01:CDS
ATTACATAAATGAGCTCATC+AGG 0.405382 4:-2328308 MsG0480018252.01.T01:CDS
GACTGTTGGACCACATTTCA+AGG 0.408463 4:-2328436 MsG0480018252.01.T01:CDS
ATTCGACACATGCTCATTGT+TGG 0.409982 4:+2333589 None:intergenic
ACCCAAATTTGAAGAGTGTA+AGG 0.411117 4:-2328679 MsG0480018252.01.T01:CDS
AACATCAATTATAGCCTTAG+TGG 0.419595 4:+2333637 None:intergenic
CTCATCTACAAACGTGGGTA+TGG 0.426956 4:-2328653 MsG0480018252.01.T01:CDS
TTTCCTTGTCTTGGGGTCCA+TGG 0.427816 4:+2329120 None:intergenic
AGTCCAAAAGCTATCTTTGA+CGG 0.433804 4:+2333809 None:intergenic
GAGAACCGTAAGCTGATCTA+TGG 0.446007 4:-2330263 MsG0480018252.01.T01:CDS
GTTCAAGCTTAAGGCTCCAT+TGG 0.447908 4:-2328391 MsG0480018252.01.T01:CDS
TTCTCAAGAGTATGAGGATA+AGG 0.453623 4:-2330225 MsG0480018252.01.T01:intron
TATGTTGAAGGCGGTGATGC+TGG 0.455644 4:-2328342 MsG0480018252.01.T01:CDS
ATCTGTTGAGCAAACACATA+AGG 0.459436 4:+2328869 None:intergenic
TTCCACTTGTGGTCTATTCG+TGG 0.460936 4:+2333490 None:intergenic
CAGGGAAGAACAATGGGCTT+TGG 0.464957 4:-2330327 MsG0480018252.01.T01:CDS
ACCGTAAGCTGATCTATGGC+AGG 0.465539 4:-2330259 MsG0480018252.01.T01:CDS
GTGGGTATGGAAAGCTAGAC+AGG 0.468462 4:-2328640 MsG0480018252.01.T01:CDS
TTTGATGACCCTCAGGGACT+GGG 0.469200 4:-2328504 MsG0480018252.01.T01:intron
TTCAAGCTTAAGGCTCCATT+GGG 0.471133 4:-2328390 MsG0480018252.01.T01:CDS
GCAACTGTTTCGATTGAGAC+AGG 0.474956 4:-2329092 MsG0480018252.01.T01:intron
ATAAACAAGAGCTTGGCCTC+TGG 0.475047 4:+2330012 None:intergenic
AGTGGAACTTCCTAAATCAA+TGG 0.486319 4:-2333474 MsG0480018252.01.T01:CDS
GCAGAACAGGGAAGAACAAT+GGG 0.492072 4:-2330333 MsG0480018252.01.T01:CDS
TGTTGATTTGGGTGAGATTG+TGG 0.493263 4:-2333618 MsG0480018252.01.T01:CDS
GCGAATAATAAACAAGAGCT+TGG 0.498068 4:+2330005 None:intergenic
GCTTTAGATCAAGATCAATT+GGG 0.500299 4:-2328222 MsG0480018252.01.T01:three_prime_UTR
GCAGTATTCTCAAGAGTATG+AGG 0.504039 4:-2330231 MsG0480018252.01.T01:CDS
ATTTCTCGCTCCTTCTTGGT+AGG 0.512570 4:-2333673 MsG0480018252.01.T01:CDS
CCCTGCCATAGATCAGCTTA+CGG 0.515436 4:+2330258 None:intergenic
CAACAATGAACATGTTGCAC+AGG 0.520606 4:-2328814 MsG0480018252.01.T01:CDS
AAGAGGAACCACTATGTTGA+AGG 0.523907 4:-2328354 MsG0480018252.01.T01:CDS
AAGCTTAAGGCTCCATTGGG+TGG 0.532905 4:-2328387 MsG0480018252.01.T01:CDS
ACATACCCATAAGTCACATA+AGG 0.533172 4:+2328785 None:intergenic
TGCTTCTTCAACACAGACTC+AGG 0.535401 4:+2330353 None:intergenic
ATCCACGAGATCTTGACTGT+TGG 0.544552 4:-2328450 MsG0480018252.01.T01:CDS
TTCTTCTTTAAGCCACCCAA+TGG 0.546850 4:+2328375 None:intergenic
GTCATTACGTGCCACCACTA+AGG 0.551081 4:-2333651 MsG0480018252.01.T01:CDS
CTGCACCTGCTCAATAATTG+AGG 0.552388 4:+2328595 None:intergenic
GTCGATGCTTCGATAACATA+CGG 0.552691 4:-2333785 MsG0480018252.01.T01:CDS
TGACACCTCAATTATTGAGC+AGG 0.556335 4:-2328600 MsG0480018252.01.T01:intron
CCTCAGGGACTGGGAAAGCA+TGG 0.559473 4:-2328495 MsG0480018252.01.T01:intron
TTGTTTATTATTCGCATACG+AGG 0.561538 4:-2329997 MsG0480018252.01.T01:CDS
AGCAGAACAGGGAAGAACAA+TGG 0.564767 4:-2330334 MsG0480018252.01.T01:CDS
TTGTTTGCTTCCTTGAAATG+TGG 0.570988 4:+2328426 None:intergenic
AACCACGAATAGACCACAAG+TGG 0.572462 4:-2333492 MsG0480018252.01.T01:CDS
GGATAAGATCTTCAATGCAT+AGG 0.579833 4:+2328469 None:intergenic
AAGCGTGAGGCTAAGCTGAA+AGG 0.580752 4:-2330051 MsG0480018252.01.T01:CDS
GATTTAGGAAGTTCCACTTG+TGG 0.581090 4:+2333479 None:intergenic
CCTTAAGCTTGAACGGCCAA+AGG 0.585766 4:+2328400 None:intergenic
GTTGATTAGTTTGAAGCGTG+AGG 0.590721 4:-2330064 MsG0480018252.01.T01:CDS
CACGTAATGACCTACCAAGA+AGG 0.591966 4:+2333663 None:intergenic
AATGGAGCCTTAAGCTTGAA+CGG 0.593439 4:+2328393 None:intergenic
GTCCAACAGTCAAGATCTCG+TGG 0.596847 4:+2328448 None:intergenic
CAACACAGACTCAGGTACAA+TGG 0.604428 4:+2330361 None:intergenic
CATCACCGCCTTCAACATAG+TGG 0.607669 4:+2328346 None:intergenic
TGGGTGGCTTAAAGAAGAAG+AGG 0.609725 4:-2328371 MsG0480018252.01.T01:CDS
CGTGAGGCTAAGCTGAAAGG+TGG 0.613387 4:-2330048 MsG0480018252.01.T01:CDS
AACATACGGTTATAGTGTGG+TGG 0.614907 4:-2333771 MsG0480018252.01.T01:CDS
CCCAAATTTGAAGAGTGTAA+GGG 0.616996 4:-2328678 MsG0480018252.01.T01:CDS
ATAATTGAGGTGTCAGTGAG+AGG 0.618904 4:+2328608 None:intergenic
ATCAATTATAGCCTTAGTGG+TGG 0.625439 4:+2333640 None:intergenic
ATGCCATGGACCCCAAGACA+AGG 0.632973 4:-2329123 MsG0480018252.01.T01:CDS
TATACTACTAAACTTCTACA+TGG 0.633891 4:-2333521 MsG0480018252.01.T01:CDS
TGTTTATTATTCGCATACGA+GGG 0.644515 4:-2329996 MsG0480018252.01.T01:intron
TGTGTTGAAGAAGCAGAACA+GGG 0.649087 4:-2330345 MsG0480018252.01.T01:CDS
AACAATGAACATGTTGCACA+GGG 0.654102 4:-2328813 MsG0480018252.01.T01:CDS
CCGTAAGCTGATCTATGGCA+GGG 0.654899 4:-2330258 MsG0480018252.01.T01:CDS
ATTTGGGTGAGATTGTGGTG+AGG 0.656917 4:-2333613 MsG0480018252.01.T01:CDS
GATAACATACGGTTATAGTG+TGG 0.672242 4:-2333774 MsG0480018252.01.T01:CDS
AGGGAACTCATCTACAAACG+TGG 0.682905 4:-2328659 MsG0480018252.01.T01:CDS
GGGAACTCATCTACAAACGT+GGG 0.687591 4:-2328658 MsG0480018252.01.T01:CDS
AGGAACCACTATGTTGAAGG+CGG 0.698307 4:-2328351 MsG0480018252.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACTAAAAAATAATTAATGA+TGG - Chr4:2330840-2330859 MsG0480018252.01.T01:intron 10.0%
!!! ACATATTATTATTATTTTTC+AGG + Chr4:2329323-2329342 None:intergenic 10.0%
!! AAAAAATAATTAATGATGGT+GGG - Chr4:2330844-2330863 MsG0480018252.01.T01:intron 15.0%
!! AAAATTACAGAAAATCAATA+TGG + Chr4:2328799-2328818 None:intergenic 15.0%
!! AAAGAAAATTAACAGAATAA+AGG + Chr4:2330632-2330651 None:intergenic 15.0%
!! AAATTACAGAAAATCAATAT+GGG + Chr4:2328798-2328817 None:intergenic 15.0%
!! AATATTCCAAAAAATAACAA+TGG - Chr4:2331109-2331128 MsG0480018252.01.T01:intron 15.0%
!! AATGAAAAATCATAAGATAA+TGG + Chr4:2331374-2331393 None:intergenic 15.0%
!! ACAAAAGATAAAATTTAATC+AGG + Chr4:2329246-2329265 None:intergenic 15.0%
!! ATATATTACAAGGTAAATAA+TGG + Chr4:2329098-2329117 None:intergenic 15.0%
!! CAAAAGATAAAATTTAATCA+GGG + Chr4:2329245-2329264 None:intergenic 15.0%
!! GTTCTTTACAAAATTTAATA+AGG - Chr4:2332399-2332418 MsG0480018252.01.T01:intron 15.0%
!! TAAAAAATAATTAATGATGG+TGG - Chr4:2330843-2330862 MsG0480018252.01.T01:intron 15.0%
!! TACAATAAAAAATCTTCAAA+AGG - Chr4:2330330-2330349 MsG0480018252.01.T01:CDS 15.0%
!! TTTCTCAAATATTTAATAGA+AGG + Chr4:2331043-2331062 None:intergenic 15.0%
!!! AAAAACAAAAGCATTATTTT+AGG + Chr4:2329284-2329303 None:intergenic 15.0%
!!! AATTGCATTTTTTTTTTGTT+GGG - Chr4:2331442-2331461 MsG0480018252.01.T01:intron 15.0%
!!! ACAATATCAAATTTTCAAAT+TGG + Chr4:2330374-2330393 None:intergenic 15.0%
!!! GTTAATTTTCTTTTTACTAA+CGG - Chr4:2330639-2330658 MsG0480018252.01.T01:intron 15.0%
!!! GTTTTTTTTTTTTTTTGAAG+AGG + Chr4:2329445-2329464 None:intergenic 15.0%
!!! TAATTGCATTTTTTTTTTGT+TGG - Chr4:2331441-2331460 MsG0480018252.01.T01:intron 15.0%
!!! TATTATGATTTTAAGAACTT+TGG - Chr4:2330150-2330169 MsG0480018252.01.T01:intron 15.0%
!!! TTTTTCTATAATTATCTAGT+AGG - Chr4:2329049-2329068 MsG0480018252.01.T01:intron 15.0%
!! AATAACATTGTGGTTTAATA+GGG - Chr4:2330474-2330493 MsG0480018252.01.T01:intron 20.0%
!! AGATATATGTTTGAGAAAAT+AGG + Chr4:2329725-2329744 None:intergenic 20.0%
!! CTTTAACATCAATAGTTTAA+TGG + Chr4:2328755-2328774 None:intergenic 20.0%
!! GAAATAGAGAGAATAATAAA+TGG + Chr4:2330780-2330799 None:intergenic 20.0%
!! TAACAATGGATCTAAATAAT+CGG - Chr4:2331123-2331142 MsG0480018252.01.T01:intron 20.0%
!! TAACGAGTTTAATAGAAATA+TGG - Chr4:2332240-2332259 MsG0480018252.01.T01:intron 20.0%
!! TGAAAAATCAATCAATAGTA+AGG + Chr4:2332712-2332731 None:intergenic 20.0%
!! TGAAATGAAAAACATACAAA+TGG + Chr4:2331335-2331354 None:intergenic 20.0%
!!! AAAAAAACAAATTTGAGACA+AGG + Chr4:2333814-2333833 None:intergenic 20.0%
!!! ATTGCATTTTTTTTTTGTTG+GGG - Chr4:2331443-2331462 MsG0480018252.01.T01:intron 20.0%
!!! CAATTGATATTTTTTGTTGT+TGG - Chr4:2333617-2333636 MsG0480018252.01.T01:CDS 20.0%
!!! TCAAAACAATCTCTTTAAAA+TGG + Chr4:2330728-2330747 None:intergenic 20.0%
!!! TGGTTTGTTTTTTATTTTGT+AGG - Chr4:2331767-2331786 MsG0480018252.01.T01:intron 20.0%
!!! TTAGATCCATTGTTATTTTT+TGG + Chr4:2331118-2331137 None:intergenic 20.0%
!!! TTATTATTTTTCAGGTCTAT+AGG + Chr4:2329315-2329334 None:intergenic 20.0%
!!! TTTTGAATTGATGGATATAA+AGG - Chr4:2328156-2328175 MsG0480018252.01.T01:three_prime_UTR 20.0%
! AAACTTTGTTCTTTCCATAA+AGG + Chr4:2328480-2328499 None:intergenic 25.0%
! AAAGAGTGAAAGAGAAATTA+GGG + Chr4:2331275-2331294 None:intergenic 25.0%
! AACAATGGATCTAAATAATC+GGG - Chr4:2331124-2331143 MsG0480018252.01.T01:intron 25.0%
! AACATTCTCAATAACATTGA+TGG + Chr4:2330508-2330527 None:intergenic 25.0%
! AAGAGCCAAAAGTAAATAAT+TGG - Chr4:2329574-2329593 MsG0480018252.01.T01:intron 25.0%
! AAGATAAAATTTAATCAGGG+TGG + Chr4:2329242-2329261 None:intergenic 25.0%
! AAGCCTAACAAATTTAAATG+AGG + Chr4:2332826-2332845 None:intergenic 25.0%
! AATAAATGGAGTATGCAATT+TGG + Chr4:2330919-2330938 None:intergenic 25.0%
! AATAATATGTTAACCCTCTT+TGG - Chr4:2329333-2329352 MsG0480018252.01.T01:intron 25.0%
! AATGAAAAACATACAAATGG+TGG + Chr4:2331332-2331351 None:intergenic 25.0%
! ACTCCATTTATTATACCAAA+TGG - Chr4:2330927-2330946 MsG0480018252.01.T01:intron 25.0%
! AGTACTTATAGTAGAAAAGA+CGG - Chr4:2332063-2332082 MsG0480018252.01.T01:intron 25.0%
! AGTGCAACTACATAAAAATA+TGG - Chr4:2328602-2328621 MsG0480018252.01.T01:CDS 25.0%
! ATCATTGCCTTTAAATCAAT+AGG + Chr4:2333116-2333135 None:intergenic 25.0%
! ATCTCTTGATCTTTCTTAAT+AGG + Chr4:2332220-2332239 None:intergenic 25.0%
! CAATAACATTGTGGTTTAAT+AGG - Chr4:2330473-2330492 MsG0480018252.01.T01:intron 25.0%
! CACTTAATTCAATTTCATGT+TGG + Chr4:2331950-2331969 None:intergenic 25.0%
! CTGCAAAATAGAAAAATTGA+CGG - Chr4:2331071-2331090 MsG0480018252.01.T01:intron 25.0%
! GGCATGTTTATCAATAAATT+TGG - Chr4:2330087-2330106 MsG0480018252.01.T01:intron 25.0%
! GTGCAACTACATAAAAATAT+GGG - Chr4:2328603-2328622 MsG0480018252.01.T01:CDS 25.0%
! TAGACACATAAAATAGATAG+TGG + Chr4:2330889-2330908 None:intergenic 25.0%
! TAGAGTAACATATACCTTTA+TGG - Chr4:2328463-2328482 MsG0480018252.01.T01:CDS 25.0%
! TATACTACTAAACTTCTACA+TGG - Chr4:2328340-2328359 MsG0480018252.01.T01:CDS 25.0%
! TCTCCATTTGGTATAATAAA+TGG + Chr4:2330933-2330952 None:intergenic 25.0%
! TGGTATTTGATAGAATAGTA+TGG - Chr4:2332260-2332279 MsG0480018252.01.T01:intron 25.0%
! TTAAGATTAAGCTAAGACAA+TGG + Chr4:2329381-2329400 None:intergenic 25.0%
! TTAGCTTAATCTTAAGATTG+AGG - Chr4:2329386-2329405 MsG0480018252.01.T01:intron 25.0%
! TTCTAAACAATAAGAGAAAC+TGG + Chr4:2332549-2332568 None:intergenic 25.0%
!! ATGTAAAAGCTTTAGTGTTA+CGG + Chr4:2330680-2330699 None:intergenic 25.0%
!! GAAAGAACAAAGTTTAAAGT+TGG - Chr4:2328485-2328504 MsG0480018252.01.T01:CDS 25.0%
!! GCTCATTTATGTAATTTTCA+CGG + Chr4:2333548-2333567 None:intergenic 25.0%
!! GGTAAATAATGGAATGAATT+TGG + Chr4:2329087-2329106 None:intergenic 25.0%
!! GTTGATTCTCTATAGTTTAT+TGG - Chr4:2329164-2329183 MsG0480018252.01.T01:intron 25.0%
!! TAAATAATTGGTCTCCTTAA+CGG - Chr4:2329586-2329605 MsG0480018252.01.T01:intron 25.0%
!! TCACCTCATTTAAATTTGTT+AGG - Chr4:2332820-2332839 MsG0480018252.01.T01:intron 25.0%
!! TGCAGTGTTTAATCTTTTTA+GGG - Chr4:2333593-2333612 MsG0480018252.01.T01:CDS 25.0%
!! TTCTTCTTCTATAAGTGTTT+TGG - Chr4:2332639-2332658 MsG0480018252.01.T01:intron 25.0%
!! TTGCAGTGTTTAATCTTTTT+AGG - Chr4:2333592-2333611 MsG0480018252.01.T01:CDS 25.0%
!! TTTTGTGAAAAGTAGAGTAA+AGG + Chr4:2330602-2330621 None:intergenic 25.0%
!!! AAACAATCTCTTTAAAATGG+TGG + Chr4:2330725-2330744 None:intergenic 25.0%
!!! AACAATCTCTTTAAAATGGT+GGG + Chr4:2330724-2330743 None:intergenic 25.0%
!!! ACTTGTAATTTTTTCCGTTA+AGG + Chr4:2329603-2329622 None:intergenic 25.0%
!!! ATTTTTCAGTATTAATGCCA+TGG - Chr4:2332724-2332743 MsG0480018252.01.T01:intron 25.0%
!!! CATTATTTTAGGCTCAAAAT+TGG + Chr4:2329273-2329292 None:intergenic 25.0%
!!! CTTTCTTCCTATTGATTTAA+AGG - Chr4:2333106-2333125 MsG0480018252.01.T01:intron 25.0%
!!! GCTATAATTGATGTTGATTT+GGG - Chr4:2328232-2328251 MsG0480018252.01.T01:three_prime_UTR 25.0%
!!! GGTATACAAGTTTACTTTTT+TGG - Chr4:2328129-2328148 MsG0480018252.01.T01:three_prime_UTR 25.0%
!!! GTTTGGTTTTTTTAGTTGTT+CGG - Chr4:2331686-2331705 MsG0480018252.01.T01:intron 25.0%
!!! TCAAAAGTGTTGTGATTTAA+GGG - Chr4:2328989-2329008 MsG0480018252.01.T01:intron 25.0%
!!! TGTATACTGGATATTTTTGT+TGG - Chr4:2332949-2332968 MsG0480018252.01.T01:intron 25.0%
!!! TTCAAAAGTGTTGTGATTTA+AGG - Chr4:2328988-2329007 MsG0480018252.01.T01:intron 25.0%
!!! TTGTTGCTTTGTTAACTTTA+AGG + Chr4:2333033-2333052 None:intergenic 25.0%
AAAACATCTAAGAAGACAAC+TGG + Chr4:2332676-2332695 None:intergenic 30.0%
AAACATCTAAGAAGACAACT+GGG + Chr4:2332675-2332694 None:intergenic 30.0%
AAATAGAAAAATTGACGGTG+TGG - Chr4:2331076-2331095 MsG0480018252.01.T01:intron 30.0%
AAGTTGAGTTAGAGGAAAAT+AGG - Chr4:2328680-2328699 MsG0480018252.01.T01:CDS 30.0%
AATAGAAAAATTGACGGTGT+GGG - Chr4:2331077-2331096 MsG0480018252.01.T01:intron 30.0%
AATTAAGTGTAGTAGAGATG+AGG - Chr4:2331961-2331980 MsG0480018252.01.T01:intron 30.0%
ACCAATAGATTGATGCATAA+TGG + Chr4:2328724-2328743 None:intergenic 30.0%
ATGAATCATAGACTTCTCAA+AGG + Chr4:2332908-2332927 None:intergenic 30.0%
ATTACATAAATGAGCTCATC+AGG - Chr4:2333553-2333572 MsG0480018252.01.T01:CDS 30.0%
ATTTCTATGTAACTCCAAAG+AGG + Chr4:2329350-2329369 None:intergenic 30.0%
CAACATTCTCAATAACATTG+TGG - Chr4:2330464-2330483 MsG0480018252.01.T01:intron 30.0%
CACAATGTTATTGAGAATGT+TGG + Chr4:2330466-2330485 None:intergenic 30.0%
CTCATGTGCAATATATTACA+AGG + Chr4:2329108-2329127 None:intergenic 30.0%
GAAACTAGACTTATGTGATT+TGG - Chr4:2332088-2332107 MsG0480018252.01.T01:intron 30.0%
GAAACTGATACAAATCAAAC+AGG + Chr4:2328879-2328898 None:intergenic 30.0%
GAAAGAGTGAAAGAGAAATT+AGG + Chr4:2331276-2331295 None:intergenic 30.0%
GGTTGTTTAGTATATAGACA+AGG - Chr4:2329667-2329686 MsG0480018252.01.T01:intron 30.0%
GTTAGATTACTAGTAGAACT+TGG - Chr4:2329481-2329500 MsG0480018252.01.T01:intron 30.0%
TAGAAATCCATGCAACTATT+TGG + Chr4:2330237-2330256 None:intergenic 30.0%
TCGAAAAGTGAATTTAGTTG+TGG - Chr4:2328962-2328981 MsG0480018252.01.T01:intron 30.0%
TCTGTTCAAATGAAAACACA+AGG - Chr4:2330053-2330072 MsG0480018252.01.T01:CDS 30.0%
TGAAACAATTGAGACGTAAA+TGG - Chr4:2332470-2332489 MsG0480018252.01.T01:intron 30.0%
TGATAAAGACTAGACAAGAT+AGG - Chr4:2332001-2332020 MsG0480018252.01.T01:intron 30.0%
TGTTTATTATTCGCATACGA+GGG - Chr4:2331865-2331884 MsG0480018252.01.T01:intron 30.0%
TTAGAATCTATTCAAGCCTA+TGG - Chr4:2329806-2329825 MsG0480018252.01.T01:intron 30.0%
TTGTTTATTATTCGCATACG+AGG - Chr4:2331864-2331883 MsG0480018252.01.T01:intron 30.0%
TTTCTATGTAACTCCAAAGA+GGG + Chr4:2329349-2329368 None:intergenic 30.0%
! AAACACAAGGTTTTTCTATG+AGG - Chr4:2330066-2330085 MsG0480018252.01.T01:CDS 30.0%
! AACATCAATTATAGCCTTAG+TGG + Chr4:2328227-2328246 None:intergenic 30.0%
! AGTTGTCTTCTTAGATGTTT+TGG - Chr4:2332675-2332694 MsG0480018252.01.T01:intron 30.0%
! ATTTTCCTTCAACACTCAAA+AGG - Chr4:2333139-2333158 MsG0480018252.01.T01:intron 30.0%
! GACATTTTGCTAATGAACTT+TGG + Chr4:2330411-2330430 None:intergenic 30.0%
! GCAGTGTTTAATCTTTTTAG+GGG - Chr4:2333594-2333613 MsG0480018252.01.T01:CDS 30.0%
! GCTTTAGATCAAGATCAATT+GGG - Chr4:2333639-2333658 MsG0480018252.01.T01:CDS 30.0%
! GGAGACCAATTATTTACTTT+TGG + Chr4:2329582-2329601 None:intergenic 30.0%
! GGCTATAATTGATGTTGATT+TGG - Chr4:2328231-2328250 MsG0480018252.01.T01:three_prime_UTR 30.0%
! GTTTTTGATGAAGTTATACG+AGG - Chr4:2332440-2332459 MsG0480018252.01.T01:intron 30.0%
! TCTCTCTATTTCATCCATTT+TGG - Chr4:2330788-2330807 MsG0480018252.01.T01:intron 30.0%
! TGCAAAATTTTCCTTGTCTT+GGG + Chr4:2332752-2332771 None:intergenic 30.0%
! TGTTTTGCAAAGTCTGAATT+TGG - Chr4:2333707-2333726 MsG0480018252.01.T01:CDS 30.0%
! TTGCAAAATTTTCCTTGTCT+TGG + Chr4:2332753-2332772 None:intergenic 30.0%
! TTTGCTCAACAGATTTTCAA+TGG - Chr4:2333001-2333020 MsG0480018252.01.T01:intron 30.0%
!! AAGTAGGGTTTTGTAGTTAT+GGG + Chr4:2331181-2331200 None:intergenic 30.0%
!! ACTAAATTCACTTTTCGACT+TGG + Chr4:2328960-2328979 None:intergenic 30.0%
!! ATGTTAAAGAAGCGTTCATT+GGG - Chr4:2328766-2328785 MsG0480018252.01.T01:intron 30.0%
!! CAATTGGGTATCTGAAATTT+TGG - Chr4:2333654-2333673 MsG0480018252.01.T01:CDS 30.0%
!! TAAGTAGGGTTTTGTAGTTA+TGG + Chr4:2331182-2331201 None:intergenic 30.0%
!! TATCTGTTTCGTGTTTTGTT+TGG - Chr4:2333782-2333801 MsG0480018252.01.T01:CDS 30.0%
!! TCATCATGTTCCATTGATTT+AGG + Chr4:2328400-2328419 None:intergenic 30.0%
!! TTGTTTGTGTTGATTCAGAT+TGG - Chr4:2331899-2331918 MsG0480018252.01.T01:intron 30.0%
!! TTTGGTCGATTTTGAATTGA+TGG - Chr4:2328147-2328166 MsG0480018252.01.T01:three_prime_UTR 30.0%
!!! AATGCTTTTGTTTTTGTGAC+AGG - Chr4:2329289-2329308 MsG0480018252.01.T01:intron 30.0%
!!! ATGCTCTCTTTTTTTACTCA+TGG - Chr4:2331006-2331025 MsG0480018252.01.T01:intron 30.0%
!!! ATTTTAGAGCAACTGTATAC+TGG - Chr4:2332936-2332955 MsG0480018252.01.T01:intron 30.0%
AAAATGTCTCGTGTTCGTAA+AGG + Chr4:2329195-2329214 None:intergenic 35.0%
AAATTAGGGTTACATACCGA+GGG + Chr4:2331261-2331280 None:intergenic 35.0%
AACAATGAACATGTTGCACA+GGG - Chr4:2333048-2333067 MsG0480018252.01.T01:intron 35.0%
AAGCCAAAAATAGGGTGATA+TGG - Chr4:2328554-2328573 MsG0480018252.01.T01:intron 35.0%
ACATACCCATAAGTCACATA+AGG + Chr4:2333079-2333098 None:intergenic 35.0%
ACCAAGGTTAATCGTAGTTT+GGG - Chr4:2330015-2330034 MsG0480018252.01.T01:CDS 35.0%
ACCCTAAAAGAATTCAATCG+AGG + Chr4:2329953-2329972 None:intergenic 35.0%
ACTCAATACCAAGACAACAA+GGG + Chr4:2329638-2329657 None:intergenic 35.0%
ACTTATAGTAGAAAAGACGG+TGG - Chr4:2332066-2332085 MsG0480018252.01.T01:intron 35.0%
AGATTGATGCATAATGGCTA+AGG + Chr4:2328718-2328737 None:intergenic 35.0%
AGTCAAATCACTAGATGTAG+AGG - Chr4:2332169-2332188 MsG0480018252.01.T01:intron 35.0%
AGTCCAAAAGCTATCTTTGA+CGG + Chr4:2328055-2328074 None:intergenic 35.0%
AGTGGAACTTCCTAAATCAA+TGG - Chr4:2328387-2328406 MsG0480018252.01.T01:CDS 35.0%
AGTGGATCCTACTATAAAGT+GGG + Chr4:2330871-2330890 None:intergenic 35.0%
ATCTGTTGAGCAAACACATA+AGG + Chr4:2332995-2333014 None:intergenic 35.0%
ATGAGGTTCAAGCCAAAAAT+AGG - Chr4:2328545-2328564 MsG0480018252.01.T01:intron 35.0%
ATGGATCTAAATAATCGGGT+CGG - Chr4:2331128-2331147 MsG0480018252.01.T01:intron 35.0%
ATGGTAAAGTTGTTCTCACA+TGG + Chr4:2330979-2330998 None:intergenic 35.0%
CAAAAGAAGTAGTGTCTCTT+TGG + Chr4:2328426-2328445 None:intergenic 35.0%
CAATTAAACCCAAGCAGTTT+AGG + Chr4:2330554-2330573 None:intergenic 35.0%
CCCTTACACTCTTCAAATTT+GGG + Chr4:2333186-2333205 None:intergenic 35.0%
CGGATTTATAGTGATAGTTC+TGG - Chr4:2331706-2331725 MsG0480018252.01.T01:intron 35.0%
GATAACATACGGTTATAGTG+TGG - Chr4:2328087-2328106 MsG0480018252.01.T01:three_prime_UTR 35.0%
GCCATTATGCATCAATCTAT+TGG - Chr4:2328720-2328739 MsG0480018252.01.T01:intron 35.0%
GCGAATAATAAACAAGAGCT+TGG + Chr4:2331859-2331878 None:intergenic 35.0%
GGAAGGTTTGTGAATAAGTA+GGG + Chr4:2331196-2331215 None:intergenic 35.0%
GGAAGTGGTAAGTTATAAGT+GGG - Chr4:2329973-2329992 MsG0480018252.01.T01:intron 35.0%
GGATAAGATCTTCAATGCAT+AGG + Chr4:2333395-2333414 None:intergenic 35.0%
GGGTAATGAATAACAGAGAT+GGG - Chr4:2331463-2331482 MsG0480018252.01.T01:intron 35.0%
GTGTCTATATCTCTCCAAAA+TGG + Chr4:2330805-2330824 None:intergenic 35.0%
TACTCAATACCAAGACAACA+AGG + Chr4:2329639-2329658 None:intergenic 35.0%
TCCCTTACACTCTTCAAATT+TGG + Chr4:2333187-2333206 None:intergenic 35.0%
TGAGGTTCAAGCCAAAAATA+GGG - Chr4:2328546-2328565 MsG0480018252.01.T01:intron 35.0%
TGCAATTACGCAAACTTTAG+AGG + Chr4:2329768-2329787 None:intergenic 35.0%
TGGAAGTGGTAAGTTATAAG+TGG - Chr4:2329972-2329991 MsG0480018252.01.T01:intron 35.0%
TTAGAGGAAAATAGGCTCAA+AGG - Chr4:2328688-2328707 MsG0480018252.01.T01:intron 35.0%
TTGAATGTCCTAAACTGCTT+GGG - Chr4:2330543-2330562 MsG0480018252.01.T01:intron 35.0%
TTGTTGGTATAAGAGCAGTT+TGG - Chr4:2332965-2332984 MsG0480018252.01.T01:intron 35.0%
TTGTTTGCTTCCTTGAAATG+TGG + Chr4:2333438-2333457 None:intergenic 35.0%
TTTGAATGTCCTAAACTGCT+TGG - Chr4:2330542-2330561 MsG0480018252.01.T01:intron 35.0%
! AAACCGTCAAAGATAGCTTT+TGG - Chr4:2328049-2328068 MsG0480018252.01.T01:three_prime_UTR 35.0%
! ACCCAAATTTGAAGAGTGTA+AGG - Chr4:2333182-2333201 MsG0480018252.01.T01:intron 35.0%
! ACCTCATCTGGAACAAATTA+TGG + Chr4:2328532-2328551 None:intergenic 35.0%
! AGCAGTTTAGGACATTCAAA+AGG + Chr4:2330542-2330561 None:intergenic 35.0%
! AGTCCATATCACCCTATTTT+TGG + Chr4:2328560-2328579 None:intergenic 35.0%
! ATCAATTATAGCCTTAGTGG+TGG + Chr4:2328224-2328243 None:intergenic 35.0%
! CAAACTTTAGAGGTCTTTCA+AGG + Chr4:2329758-2329777 None:intergenic 35.0%
! CAAAGAGACACTACTTCTTT+TGG - Chr4:2328424-2328443 MsG0480018252.01.T01:CDS 35.0%
! CCCAAATTTGAAGAGTGTAA+GGG - Chr4:2333183-2333202 MsG0480018252.01.T01:intron 35.0%
! CTAAAGCTTTTACATGCACA+TGG - Chr4:2330685-2330704 MsG0480018252.01.T01:intron 35.0%
! GCAAAATTTTCCTTGTCTTG+GGG + Chr4:2332751-2332770 None:intergenic 35.0%
! GCAGTTTAGGACATTCAAAA+GGG + Chr4:2330541-2330560 None:intergenic 35.0%
! GCCTCGATTGAATTCTTTTA+GGG - Chr4:2329949-2329968 MsG0480018252.01.T01:intron 35.0%
! TAGTGGATCCTACTATAAAG+TGG + Chr4:2330872-2330891 None:intergenic 35.0%
! TCAGATTGGATTAGAGTGTT+AGG - Chr4:2331913-2331932 MsG0480018252.01.T01:intron 35.0%
! TGCCTCGATTGAATTCTTTT+AGG - Chr4:2329948-2329967 MsG0480018252.01.T01:intron 35.0%
! TGGATTTTATGTTGATCCAG+AGG - Chr4:2331833-2331852 MsG0480018252.01.T01:intron 35.0%
! TTCTCAAGAGTATGAGGATA+AGG - Chr4:2331636-2331655 MsG0480018252.01.T01:intron 35.0%
! TTGAGCCTTATGTGACTTAT+GGG - Chr4:2333071-2333090 MsG0480018252.01.T01:intron 35.0%
! TTGTTGTCTTGGTATTGAGT+AGG - Chr4:2329638-2329657 MsG0480018252.01.T01:intron 35.0%
! TTTGATACTTGAGCCTTTTC+AGG - Chr4:2329216-2329235 MsG0480018252.01.T01:intron 35.0%
!! AAAAGAGAGCATTGATGCAA+TGG + Chr4:2330998-2331017 None:intergenic 35.0%
!! AAATGGTGGATCAAAGATTC+AGG + Chr4:2331318-2331337 None:intergenic 35.0%
!! GATGTTAAAGAAGCGTTCAT+TGG - Chr4:2328765-2328784 MsG0480018252.01.T01:intron 35.0%
!! GGCTTTAGATCAAGATCAAT+TGG - Chr4:2333638-2333657 MsG0480018252.01.T01:CDS 35.0%
!! TCCATAATTTGTTCCAGATG+AGG - Chr4:2328528-2328547 MsG0480018252.01.T01:intron 35.0%
!! TCGATTGAATTCTTTTAGGG+TGG - Chr4:2329952-2329971 MsG0480018252.01.T01:intron 35.0%
!! TGGTATGGTCATTTTACCAT+AGG + Chr4:2329825-2329844 None:intergenic 35.0%
!! TTTTACTACCCTTGTTGTCT+TGG - Chr4:2329627-2329646 MsG0480018252.01.T01:intron 35.0%
AACATACGGTTATAGTGTGG+TGG - Chr4:2328090-2328109 MsG0480018252.01.T01:three_prime_UTR 40.0%
AACTTAGACCGATCCATCTA+AGG - Chr4:2329525-2329544 MsG0480018252.01.T01:intron 40.0%
AAGAGGAACCACTATGTTGA+AGG - Chr4:2333507-2333526 MsG0480018252.01.T01:CDS 40.0%
AATGGAGCCTTAAGCTTGAA+CGG + Chr4:2333471-2333490 None:intergenic 40.0%
ACCACTCAATCAACATGGTA+TGG + Chr4:2329840-2329859 None:intergenic 40.0%
ACCCAAACTACGATTAACCT+TGG + Chr4:2330019-2330038 None:intergenic 40.0%
ACCCAACTACAAACACAACA+AGG + Chr4:2332860-2332879 None:intergenic 40.0%
AGGAAGCAAACAACTTCCTT+TGG - Chr4:2333445-2333464 MsG0480018252.01.T01:CDS 40.0%
AGGAGAGTAGATTAGACAAC+AGG - Chr4:2332145-2332164 MsG0480018252.01.T01:intron 40.0%
ATTCGACACATGCTCATTGT+TGG + Chr4:2328275-2328294 None:intergenic 40.0%
CAAAGCAAGTCAGCAACATA+TGG + Chr4:2333341-2333360 None:intergenic 40.0%
CAACAATGAACATGTTGCAC+AGG - Chr4:2333047-2333066 MsG0480018252.01.T01:intron 40.0%
CACCAAGGTTAATCGTAGTT+TGG - Chr4:2330014-2330033 MsG0480018252.01.T01:CDS 40.0%
CATGGATGAAGTTGAGTTAG+AGG - Chr4:2328672-2328691 MsG0480018252.01.T01:CDS 40.0%
CTCACTAATCAGTTGTGTTG+TGG - Chr4:2331747-2331766 MsG0480018252.01.T01:intron 40.0%
CTTATCCCACTAAGTGAGAT+CGG + Chr4:2332305-2332324 None:intergenic 40.0%
GAAATTAGGGTTACATACCG+AGG + Chr4:2331262-2331281 None:intergenic 40.0%
GAGCTTGGAGTTAAAGATCA+TGG - Chr4:2328654-2328673 MsG0480018252.01.T01:CDS 40.0%
GATTTAGGAAGTTCCACTTG+TGG + Chr4:2328385-2328404 None:intergenic 40.0%
GGAGAGTAGATTAGACAACA+GGG - Chr4:2332146-2332165 MsG0480018252.01.T01:intron 40.0%
GGGAAGGTTTGTGAATAAGT+AGG + Chr4:2331197-2331216 None:intergenic 40.0%
GGGGTAATGAATAACAGAGA+TGG - Chr4:2331462-2331481 MsG0480018252.01.T01:intron 40.0%
GGGTAAAGATCATCTCCATT+TGG + Chr4:2330945-2330964 None:intergenic 40.0%
GTCGATGCTTCGATAACATA+CGG - Chr4:2328076-2328095 MsG0480018252.01.T01:three_prime_UTR 40.0%
TAGATCGACCTTAGATGGAT+CGG + Chr4:2329536-2329555 None:intergenic 40.0%
TAGGGTGATATGGACTTTCA+AGG - Chr4:2328564-2328583 MsG0480018252.01.T01:intron 40.0%
TCACTTAGTGGGATAAGGTT+TGG - Chr4:2332308-2332327 MsG0480018252.01.T01:intron 40.0%
TCTCTCTTAGCAAGTGTGTT+GGG + Chr4:2329865-2329884 None:intergenic 40.0%
TGACACCTCAATTATTGAGC+AGG - Chr4:2333261-2333280 MsG0480018252.01.T01:intron 40.0%
TGATGCGCTTGAAGTTAGAA+AGG - Chr4:2328627-2328646 MsG0480018252.01.T01:CDS 40.0%
TGGATCTAAATAATCGGGTC+GGG - Chr4:2331129-2331148 MsG0480018252.01.T01:intron 40.0%
TGGTAAGTTATAAGTGGGTC+AGG - Chr4:2329978-2329997 MsG0480018252.01.T01:intron 40.0%
TGGTGACAAAGTGATACTCA+AGG - Chr4:2328505-2328524 MsG0480018252.01.T01:intron 40.0%
TGTGTTGAAGAAGCAGAACA+GGG - Chr4:2331516-2331535 MsG0480018252.01.T01:intron 40.0%
TTCAAGCTTAAGGCTCCATT+GGG - Chr4:2333471-2333490 MsG0480018252.01.T01:CDS 40.0%
TTCTCTCTTAGCAAGTGTGT+TGG + Chr4:2329866-2329885 None:intergenic 40.0%
TTCTTCTTTAAGCCACCCAA+TGG + Chr4:2333489-2333508 None:intergenic 40.0%
TTGTGTAGATCGACCTTAGA+TGG + Chr4:2329541-2329560 None:intergenic 40.0%
! ACCATACCATGTTGATTGAG+TGG - Chr4:2329836-2329855 MsG0480018252.01.T01:intron 40.0%
! ATAATTGAGGTGTCAGTGAG+AGG + Chr4:2333256-2333275 None:intergenic 40.0%
! CACACTTGCTAAGAGAGAAT+TGG - Chr4:2329867-2329886 MsG0480018252.01.T01:intron 40.0%
! GCAGTATTCTCAAGAGTATG+AGG - Chr4:2331630-2331649 MsG0480018252.01.T01:intron 40.0%
! GCCTTGTTGTGTTTGTAGTT+GGG - Chr4:2332856-2332875 MsG0480018252.01.T01:intron 40.0%
! GTTGAGCCTTATGTGACTTA+TGG - Chr4:2333070-2333089 MsG0480018252.01.T01:intron 40.0%
! TGCCTTGTTGTGTTTGTAGT+TGG - Chr4:2332855-2332874 MsG0480018252.01.T01:intron 40.0%
! TGTCTTGGTATTGAGTAGGA+AGG - Chr4:2329642-2329661 MsG0480018252.01.T01:intron 40.0%
! TTGGTATTGAGTAGGAAGGT+TGG - Chr4:2329646-2329665 MsG0480018252.01.T01:intron 40.0%
!! ATAAGGCGTTGTTAGCTTAG+CGG - Chr4:2332416-2332435 MsG0480018252.01.T01:intron 40.0%
!! GTTGATTAGTTTGAAGCGTG+AGG - Chr4:2331797-2331816 MsG0480018252.01.T01:intron 40.0%
!! TGTTGATTTGGGTGAGATTG+TGG - Chr4:2328243-2328262 MsG0480018252.01.T01:three_prime_UTR 40.0%
!!! GAAAGCCTTTTGAGTGTTGA+AGG + Chr4:2333147-2333166 None:intergenic 40.0%
!!! GAATTCTTTTAGGGTGGAAG+TGG - Chr4:2329958-2329977 MsG0480018252.01.T01:intron 40.0%
!!! TTTTTGGCTTGAACCTCATC+TGG + Chr4:2328544-2328563 None:intergenic 40.0%
AACCACGAATAGACCACAAG+TGG - Chr4:2328369-2328388 MsG0480018252.01.T01:CDS 45.0%
AATGACTCTGCAGGTGCAAA+GGG + Chr4:2331230-2331249 None:intergenic 45.0%
ACATGTAGAGAGAAGACCTG+TGG - Chr4:2332111-2332130 MsG0480018252.01.T01:intron 45.0%
ACTAAGTGAGATCGGCTACA+TGG + Chr4:2332297-2332316 None:intergenic 45.0%
AGCAGAACAGGGAAGAACAA+TGG - Chr4:2331527-2331546 MsG0480018252.01.T01:intron 45.0%
AGGAACCACTATGTTGAAGG+CGG - Chr4:2333510-2333529 MsG0480018252.01.T01:CDS 45.0%
AGGGAACTCATCTACAAACG+TGG - Chr4:2333202-2333221 MsG0480018252.01.T01:intron 45.0%
AGTTAGAAAGGTGGAGAGCT+TGG - Chr4:2328639-2328658 MsG0480018252.01.T01:CDS 45.0%
ATAAACAAGAGCTTGGCCTC+TGG + Chr4:2331852-2331871 None:intergenic 45.0%
ATCCACGAGATCTTGACTGT+TGG - Chr4:2333411-2333430 MsG0480018252.01.T01:intron 45.0%
ATGTAGCCGATCTCACTTAG+TGG - Chr4:2332296-2332315 MsG0480018252.01.T01:intron 45.0%
ATTTCTCGCTCCTTCTTGGT+AGG - Chr4:2328188-2328207 MsG0480018252.01.T01:three_prime_UTR 45.0%
ATTTGGGTGAGATTGTGGTG+AGG - Chr4:2328248-2328267 MsG0480018252.01.T01:three_prime_UTR 45.0%
CAACACAGACTCAGGTACAA+TGG + Chr4:2331503-2331522 None:intergenic 45.0%
CACGTAATGACCTACCAAGA+AGG + Chr4:2328201-2328220 None:intergenic 45.0%
CGATCTCACTTAGTGGGATA+AGG - Chr4:2332303-2332322 MsG0480018252.01.T01:intron 45.0%
CGCACATCCAAATAGTTGCA+TGG - Chr4:2330227-2330246 MsG0480018252.01.T01:CDS 45.0%
CTCACATGGCTCAAAAGTCA+GGG + Chr4:2330965-2330984 None:intergenic 45.0%
CTCATCTACAAACGTGGGTA+TGG - Chr4:2333208-2333227 MsG0480018252.01.T01:intron 45.0%
CTCCTTGCTACAAAATCCAC+AGG + Chr4:2332130-2332149 None:intergenic 45.0%
CTGCACCTGCTCAATAATTG+AGG + Chr4:2333269-2333288 None:intergenic 45.0%
CTGTGTTGAAGAAGCAGAAC+AGG - Chr4:2331515-2331534 MsG0480018252.01.T01:intron 45.0%
GACTGTTGGACCACATTTCA+AGG - Chr4:2333425-2333444 MsG0480018252.01.T01:intron 45.0%
GAGAACCGTAAGCTGATCTA+TGG - Chr4:2331598-2331617 MsG0480018252.01.T01:intron 45.0%
GATGATTTCTCGCTCCTTCT+TGG - Chr4:2328184-2328203 MsG0480018252.01.T01:three_prime_UTR 45.0%
GCAACTGTTTCGATTGAGAC+AGG - Chr4:2332769-2332788 MsG0480018252.01.T01:intron 45.0%
GCAGAACAGGGAAGAACAAT+GGG - Chr4:2331528-2331547 MsG0480018252.01.T01:intron 45.0%
GGGAACTCATCTACAAACGT+GGG - Chr4:2333203-2333222 MsG0480018252.01.T01:intron 45.0%
GGGTAACCACTCAATCAACA+TGG + Chr4:2329845-2329864 None:intergenic 45.0%
GTTCAAGCTTAAGGCTCCAT+TGG - Chr4:2333470-2333489 MsG0480018252.01.T01:CDS 45.0%
TCTCACATGGCTCAAAAGTC+AGG + Chr4:2330966-2330985 None:intergenic 45.0%
TGCGCTTGAAGTTAGAAAGG+TGG - Chr4:2328630-2328649 MsG0480018252.01.T01:CDS 45.0%
TGCTTCTTCAACACAGACTC+AGG + Chr4:2331511-2331530 None:intergenic 45.0%
TGGGTGGCTTAAAGAAGAAG+AGG - Chr4:2333490-2333509 MsG0480018252.01.T01:CDS 45.0%
TGTAGCCGATCTCACTTAGT+GGG - Chr4:2332297-2332316 MsG0480018252.01.T01:intron 45.0%
TTAATCAGGGTGGCCTGAAA+AGG + Chr4:2329232-2329251 None:intergenic 45.0%
TTCCACTTGTGGTCTATTCG+TGG + Chr4:2328374-2328393 None:intergenic 45.0%
! ACTTGCTTTGATGACCCTCA+GGG - Chr4:2333351-2333370 MsG0480018252.01.T01:intron 45.0%
! GACCTGTGGATTTTGTAGCA+AGG - Chr4:2332125-2332144 MsG0480018252.01.T01:intron 45.0%
! GGTGGATGACGTGCTTTTAA+AGG - Chr4:2328108-2328127 MsG0480018252.01.T01:three_prime_UTR 45.0%
!! CTACGATTAACCTTGGTGCT+CGG + Chr4:2330012-2330031 None:intergenic 45.0%
!!! AGTTTTAAATTTTTTTTATA+TGG + Chr4:2329509-2329528 None:intergenic 5.0%
AAGCGTGAGGCTAAGCTGAA+AGG - Chr4:2331810-2331829 MsG0480018252.01.T01:intron 50.0%
AAGCTTAAGGCTCCATTGGG+TGG - Chr4:2333474-2333493 MsG0480018252.01.T01:CDS 50.0%
ACCGTAAGCTGATCTATGGC+AGG - Chr4:2331602-2331621 MsG0480018252.01.T01:intron 50.0%
CATCACCGCCTTCAACATAG+TGG + Chr4:2333518-2333537 None:intergenic 50.0%
CCCTGCCATAGATCAGCTTA+CGG + Chr4:2331606-2331625 None:intergenic 50.0%
CCGTAAGCTGATCTATGGCA+GGG - Chr4:2331603-2331622 MsG0480018252.01.T01:intron 50.0%
CCTTAAGCTTGAACGGCCAA+AGG + Chr4:2333464-2333483 None:intergenic 50.0%
CCTTTGGCCGTTCAAGCTTA+AGG - Chr4:2333461-2333480 MsG0480018252.01.T01:CDS 50.0%
GAATGACTCTGCAGGTGCAA+AGG + Chr4:2331231-2331250 None:intergenic 50.0%
GAGGAAGTGAATGACTCTGC+AGG + Chr4:2331239-2331258 None:intergenic 50.0%
GAGTCATTCACTTCCTCCCT+CGG - Chr4:2331242-2331261 MsG0480018252.01.T01:intron 50.0%
GGGCTTGTCAGCAAATAGTG+AGG + Chr4:2331161-2331180 None:intergenic 50.0%
GGTGGGACCCACTTTATAGT+AGG - Chr4:2330861-2330880 MsG0480018252.01.T01:intron 50.0%
GTCACTGCAGTGCTCTTGTT+TGG - Chr4:2331669-2331688 MsG0480018252.01.T01:intron 50.0%
GTCATTACGTGCCACCACTA+AGG - Chr4:2328210-2328229 MsG0480018252.01.T01:three_prime_UTR 50.0%
GTCCAACAGTCAAGATCTCG+TGG + Chr4:2333416-2333435 None:intergenic 50.0%
GTGGGTATGGAAAGCTAGAC+AGG - Chr4:2333221-2333240 MsG0480018252.01.T01:intron 50.0%
TATGTTGAAGGCGGTGATGC+TGG - Chr4:2333519-2333538 MsG0480018252.01.T01:CDS 50.0%
TTAGGGTTACATACCGAGGG+AGG + Chr4:2331258-2331277 None:intergenic 50.0%
TTTCCTTGTCTTGGGGTCCA+TGG + Chr4:2332744-2332763 None:intergenic 50.0%
! CAGGGAAGAACAATGGGCTT+TGG - Chr4:2331534-2331553 MsG0480018252.01.T01:intron 50.0%
! GACTTGCTTTGATGACCCTC+AGG - Chr4:2333350-2333369 MsG0480018252.01.T01:intron 50.0%
! TTTGATGACCCTCAGGGACT+GGG - Chr4:2333357-2333376 MsG0480018252.01.T01:intron 50.0%
ATGCCATGGACCCCAAGACA+AGG - Chr4:2332738-2332757 MsG0480018252.01.T01:intron 55.0%
CATGCTTTCCCAGTCCCTGA+GGG + Chr4:2333368-2333387 None:intergenic 55.0%
CGTGAGGCTAAGCTGAAAGG+TGG - Chr4:2331813-2331832 MsG0480018252.01.T01:intron 55.0%
! AAAGGGTTTTCGCTGCGGGA+AGG + Chr4:2331213-2331232 None:intergenic 55.0%
! CTTTGATGACCCTCAGGGAC+TGG - Chr4:2333356-2333375 MsG0480018252.01.T01:intron 55.0%
! GGTGCAAAGGGTTTTCGCTG+CGG + Chr4:2331218-2331237 None:intergenic 55.0%
! GTGCAAAGGGTTTTCGCTGC+GGG + Chr4:2331217-2331236 None:intergenic 55.0%
CCATGCTTTCCCAGTCCCTG+AGG + Chr4:2333369-2333388 None:intergenic 60.0%
CCTCAGGGACTGGGAAAGCA+TGG - Chr4:2333366-2333385 MsG0480018252.01.T01:intron 60.0%
GGACGATGATCCGAGCACCA+AGG - Chr4:2329999-2330018 MsG0480018252.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr4 gene 2328046 2333837 2328046 ID=MsG0480018252.01;Name=MsG0480018252.01
Chr4 mRNA 2328046 2333837 2328046 ID=MsG0480018252.01.T01;Parent=MsG0480018252.01;Name=MsG0480018252.01.T01;_AED=0.34;_eAED=0.35;_QI=0|0.66|0.71|1|1|1|7|250|387
Chr4 exon 2328046 2328511 2328046 ID=MsG0480018252.01.T01:exon:1189;Parent=MsG0480018252.01.T01
Chr4 exon 2328601 2328703 2328601 ID=MsG0480018252.01.T01:exon:1188;Parent=MsG0480018252.01.T01
Chr4 exon 2328791 2328900 2328791 ID=MsG0480018252.01.T01:exon:1187;Parent=MsG0480018252.01.T01
Chr4 exon 2329093 2329150 2329093 ID=MsG0480018252.01.T01:exon:1186;Parent=MsG0480018252.01.T01
Chr4 exon 2329997 2330094 2329997 ID=MsG0480018252.01.T01:exon:1185;Parent=MsG0480018252.01.T01
Chr4 exon 2330226 2330404 2330226 ID=MsG0480018252.01.T01:exon:1184;Parent=MsG0480018252.01.T01
Chr4 exon 2333438 2333837 2333438 ID=MsG0480018252.01.T01:exon:1183;Parent=MsG0480018252.01.T01
Chr4 CDS 2333438 2333837 2333438 ID=MsG0480018252.01.T01:cds;Parent=MsG0480018252.01.T01
Chr4 CDS 2330226 2330404 2330226 ID=MsG0480018252.01.T01:cds;Parent=MsG0480018252.01.T01
Chr4 CDS 2329997 2330094 2329997 ID=MsG0480018252.01.T01:cds;Parent=MsG0480018252.01.T01
Chr4 CDS 2329093 2329150 2329093 ID=MsG0480018252.01.T01:cds;Parent=MsG0480018252.01.T01
Chr4 CDS 2328791 2328900 2328791 ID=MsG0480018252.01.T01:cds;Parent=MsG0480018252.01.T01
Chr4 CDS 2328601 2328703 2328601 ID=MsG0480018252.01.T01:cds;Parent=MsG0480018252.01.T01
Chr4 CDS 2328296 2328511 2328296 ID=MsG0480018252.01.T01:cds;Parent=MsG0480018252.01.T01
Chr4 three_prime_UTR 2328046 2328295 2328046 ID=MsG0480018252.01.T01:three_prime_utr;Parent=MsG0480018252.01.T01
Gene Sequence

>MsG0480018252.01.T01

ATGAAACCGTCAAAGATAGCTTTTGGACTTGTCGATGCTTCGATAACATACGGTTATAGTGTGGTGGATGACGTGCTTTTAAAGGTATACAAGTTTACTTTTTTGGTCGATTTTGAATTGATGGATATAAAGGACGACGATGATTTCTCGCTCCTTCTTGGTAGGTCATTACGTGCCACCACTAAGGCTATAATTGATGTTGATTTGGGTGAGATTGTGGTGAGGTCCAACAATGAGCATGTGTCGAATAATATCTTCAACTTCGTGCAGAGTAATGATGAAAATGTTCAATGTTATACTACTAAACTTCTACATGGAGTCGAAACCACGAATAGACCACAAGTGGAACTTCCTAAATCAATGGAACATGATGAAAACCAAAGAGACACTACTTCTTTTGAGATGGGTGAAGAAGTGAAATCCATTGTACCTGAGTCTGTGTTGAAGAAGCAGAACAGGGAAGAACAATGGGCTTTGGCTAAAACTCAAGAATTTGAAGCTGCTAAGAAGAAAAGAGCTGAGAACCGTAAGCTGATCTATGGCAGGGCTAAGCAGTATTCTCAAGAGTATGAGGATAAGGAAAGAGAGTTGATTAGTTTGAAGCGTGAGGCTAAGCTGAAAGGTGGATTTTATGTTGATCCAGAGGCCAAGCTCTTGTTTATTATTCGCATACGAGGTATTAATGCCATGGACCCCAAGACAAGGAAAATTTTGCAACTGTTTCGATTGAGACAGTTTGGTGATCCTTATGTGTTTGCTCAACAGATTTTCAATGGTGTTTTCCTTAAAGTTAACAAAGCAACAATGAACATGTTGCACAGGGTTGAGCCTTATGTGACTTATGGATACCCAAATTTGAAGAGTGTAAGGGAACTCATCTACAAACGTGGGTATGGAAAGCTAGACAGGCAGCGAACTCCTCTCACTGACACCTCAATTATTGAGCAGGGACTGGGAAAGCATGGTATCCTATGCATTGAAGATCTTATCCACGAGATCTTGACTGTTGGACCACATTTCAAGGAAGCAAACAACTTCCTTTGGCCGTTCAAGCTTAAGGCTCCATTGGGTGGCTTAAAGAAGAAGAGGAACCACTATGTTGAAGGCGGTGATGCTGGAAACCGTGAAAATTACATAAATGAGCTCATCAGGAGAATGAATTAA
Protein sequence

>MsG0480018252.01.T01

MKPSKIAFGLVDASITYGYSVVDDVLLKVYKFTFLVDFELMDIKDDDDFSLLLGRSLRATTKAIIDVDLGEIVVRSNNEHVSNNIFNFVQSNDENVQCYTTKLLHGVETTNRPQVELPKSMEHDENQRDTTSFEMGEEVKSIVPESVLKKQNREEQWALAKTQEFEAAKKKRAENRKLIYGRAKQYSQEYEDKERELISLKREAKLKGGFYVDPEAKLLFIIRIRGINAMDPKTRKILQLFRLRQFGDPYVFAQQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLDRQRTPLTDTSIIEQGLGKHGILCIEDLIHEILTVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNRENYINELIRRMN*