Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680032770.01.T01 | PNY01831.1 | 98.182 | 110 | 2 | 0 | 1 | 110 | 1 | 110 | 1.28E-69 | 213 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680032770.01.T01 | Q9M352 | 80 | 110 | 22 | 0 | 1 | 110 | 1 | 110 | 2.15E-56 | 173 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680032770.01.T01 | A0A2K3NFL8 | 98.182 | 110 | 2 | 0 | 1 | 110 | 1 | 110 | 6.10e-70 | 213 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048135.01 | MsG0680032770.01 | 0.815604 | 8.489800e-52 | 5.880351e-49 |
| MsG0080048687.01 | MsG0680032770.01 | 0.846126 | 2.641812e-59 | 4.501025e-56 |
| MsG0080048971.01 | MsG0680032770.01 | 0.883447 | 4.451493e-71 | 2.822755e-67 |
| MsG0180000339.01 | MsG0680032770.01 | 0.855118 | 7.815505e-62 | 1.785072e-58 |
| MsG0180000575.01 | MsG0680032770.01 | 0.893034 | 9.146084e-75 | 8.571845e-71 |
| MsG0180000614.01 | MsG0680032770.01 | 0.857262 | 1.839992e-62 | 4.514222e-59 |
| MsG0180000615.01 | MsG0680032770.01 | 0.870812 | 1.099208e-66 | 4.334021e-63 |
| MsG0180000743.01 | MsG0680032770.01 | 0.867122 | 1.726575e-65 | 5.959964e-62 |
| MsG0180003117.01 | MsG0680032770.01 | 0.811671 | 6.230745e-51 | 3.880360e-48 |
| MsG0180003313.01 | MsG0680032770.01 | 0.873370 | 1.549376e-67 | 6.707388e-64 |
| MsG0180003612.01 | MsG0680032770.01 | 0.843618 | 1.254089e-58 | 1.973502e-55 |
| MsG0180003793.01 | MsG0680032770.01 | 0.877779 | 4.780470e-69 | 2.434141e-65 |
| MsG0180004009.01 | MsG0680032770.01 | 0.812217 | 4.737900e-51 | 2.994668e-48 |
| MsG0180004129.01 | MsG0680032770.01 | 0.849971 | 2.295348e-60 | 4.427937e-57 |
| MsG0180004130.01 | MsG0680032770.01 | 0.849996 | 2.258395e-60 | 4.360128e-57 |
| MsG0180004481.01 | MsG0680032770.01 | 0.810779 | 9.726599e-51 | 5.916790e-48 |
| MsG0180004509.01 | MsG0680032770.01 | 0.856903 | 2.348069e-62 | 5.691352e-59 |
| MsG0180004607.01 | MsG0680032770.01 | 0.809511 | 1.825183e-50 | 1.073682e-47 |
| MsG0180004609.01 | MsG0680032770.01 | 0.816129 | 6.482545e-52 | 4.554769e-49 |
| MsG0180004625.01 | MsG0680032770.01 | 0.840724 | 7.318150e-58 | 1.051729e-54 |
| MsG0180004854.01 | MsG0680032770.01 | 0.835820 | 1.343325e-56 | 1.661516e-53 |
| MsG0180005361.01 | MsG0680032770.01 | 0.837239 | 5.844460e-57 | 7.544967e-54 |
| MsG0180005366.01 | MsG0680032770.01 | 0.852467 | 4.528680e-61 | 9.471211e-58 |
| MsG0180005426.01 | MsG0680032770.01 | 0.878530 | 2.605912e-69 | 1.365446e-65 |
| MsG0180005659.01 | MsG0680032770.01 | 0.814129 | 1.802550e-51 | 1.199401e-48 |
| MsG0180005851.01 | MsG0680032770.01 | 0.801663 | 8.095753e-49 | 3.888167e-46 |
| MsG0180006013.01 | MsG0680032770.01 | 0.824659 | 7.161517e-54 | 6.384675e-51 |
| MsG0280006422.01 | MsG0680032770.01 | 0.807590 | 4.692237e-50 | 2.623684e-47 |
| MsG0280006424.01 | MsG0680032770.01 | 0.920344 | 1.440530e-87 | 4.858422e-83 |
| MsG0280010801.01 | MsG0680032770.01 | 0.898187 | 6.784115e-77 | 7.933853e-73 |
| MsG0280010995.01 | MsG0680032770.01 | 0.841426 | 4.787739e-58 | 7.032558e-55 |
| MsG0280011234.01 | MsG0680032770.01 | 0.852932 | 3.336596e-61 | 7.086076e-58 |
| MsG0280011308.01 | MsG0680032770.01 | 0.820986 | 5.132873e-53 | 4.124087e-50 |
| MsG0380011643.01 | MsG0680032770.01 | 0.843884 | 1.064655e-58 | 1.689391e-55 |
| MsG0380012073.01 | MsG0680032770.01 | 0.905453 | 4.226945e-80 | 6.841400e-76 |
| MsG0680031628.01 | MsG0680032770.01 | 0.808692 | 2.733153e-50 | 1.573086e-47 |
| MsG0680031763.01 | MsG0680032770.01 | 0.870850 | 1.068177e-66 | 4.217835e-63 |
| MsG0680032770.01 | MsG0680035848.01 | 0.919323 | 5.197073e-87 | 1.659908e-82 |
| MsG0680032770.01 | MsG0780036240.01 | 0.861894 | 7.441571e-64 | 2.138021e-60 |
| MsG0680032770.01 | MsG0780036546.01 | 0.811094 | 8.313425e-51 | 5.099652e-48 |
| MsG0680032770.01 | MsG0780036547.01 | 0.865029 | 7.941269e-65 | 2.546902e-61 |
| MsG0680032770.01 | MsG0780036822.01 | 0.882733 | 8.130210e-71 | 5.009962e-67 |
| MsG0680032770.01 | MsG0780038400.01 | 0.873576 | 1.321492e-67 | 5.763508e-64 |
| MsG0680032770.01 | MsG0780038587.01 | 0.910227 | 2.370743e-82 | 4.793149e-78 |
| MsG0680032770.01 | MsG0780038645.01 | 0.807127 | 5.883612e-50 | 3.250503e-47 |
| MsG0680032770.01 | MsG0780039271.01 | 0.859508 | 3.941684e-63 | 1.043435e-59 |
| MsG0680032770.01 | MsG0780039848.01 | 0.818745 | 1.669534e-52 | 1.260334e-49 |
| MsG0680032770.01 | MsG0780040338.01 | 0.860933 | 1.461511e-63 | 4.063338e-60 |
| MsG0680032770.01 | MsG0780040511.01 | 0.830905 | 2.256382e-55 | 2.410310e-52 |
| MsG0680032770.01 | MsG0780040782.01 | 0.878816 | 2.066829e-69 | 1.094347e-65 |
| MsG0680032770.01 | MsG0780040900.01 | 0.892131 | 2.105085e-74 | 1.898759e-70 |
| MsG0680032770.01 | MsG0780041147.01 | 0.873902 | 1.025727e-67 | 4.525714e-64 |
| MsG0680032770.01 | MsG0780041223.01 | 0.860025 | 2.752907e-63 | 7.419499e-60 |
| MsG0680032770.01 | MsG0780041224.01 | 0.844984 | 5.389350e-59 | 8.852137e-56 |
| MsG0680032770.01 | MsG0780041295.01 | 0.861338 | 1.100894e-63 | 3.104773e-60 |
| MsG0680032770.01 | MsG0780041462.01 | 0.858405 | 8.425676e-63 | 2.148072e-59 |
| MsG0680032770.01 | MsG0780041519.01 | 0.816513 | 5.318891e-52 | 3.776569e-49 |
| MsG0680032770.01 | MsG0880041967.01 | 0.869063 | 4.098642e-66 | 1.517060e-62 |
| MsG0680032770.01 | MsG0880042125.01 | 0.904473 | 1.183576e-79 | 1.833825e-75 |
| MsG0680032770.01 | MsG0880043517.01 | 0.851355 | 9.366932e-61 | 1.891015e-57 |
| MsG0680032770.01 | MsG0880043770.01 | 0.872246 | 3.685982e-67 | 1.531523e-63 |
| MsG0680032770.01 | MsG0880044711.01 | 0.832058 | 1.174009e-55 | 1.297579e-52 |
| MsG0680032770.01 | MsG0880045072.01 | 0.826511 | 2.606147e-54 | 2.449147e-51 |
| MsG0680032770.01 | MsG0880046177.01 | 0.883947 | 2.912869e-71 | 1.885053e-67 |
| MsG0680032770.01 | MsG0880046253.01 | 0.801706 | 7.933627e-49 | 3.814457e-46 |
| MsG0680032770.01 | MsG0880046444.01 | 0.915637 | 4.648207e-85 | 1.226938e-80 |
| MsG0680032770.01 | MsG0880046575.01 | 0.840740 | 7.248400e-58 | 1.042208e-54 |
| MsG0680032770.01 | MsG0880046879.01 | 0.916192 | 2.393487e-85 | 6.505510e-81 |
| MsG0680032770.01 | MsG0880046933.01 | 0.836334 | 9.947920e-57 | 1.249858e-53 |
| MsG0680032770.01 | MsG0880047427.01 | 0.810423 | 1.161469e-50 | 6.998021e-48 |
| MsG0480018477.01 | MsG0680032770.01 | 0.883256 | 5.233611e-71 | 3.293364e-67 |
| MsG0480020959.01 | MsG0680032770.01 | 0.844689 | 6.472421e-59 | 1.053169e-55 |
| MsG0480021006.01 | MsG0680032770.01 | 0.846316 | 2.345099e-59 | 4.020150e-56 |
| MsG0480021159.01 | MsG0680032770.01 | 0.842158 | 3.068257e-58 | 4.611078e-55 |
| MsG0480021453.01 | MsG0680032770.01 | 0.813167 | 2.935355e-51 | 1.902686e-48 |
| MsG0480021832.01 | MsG0680032770.01 | 0.817935 | 2.546814e-52 | 1.880168e-49 |
| MsG0480022913.01 | MsG0680032770.01 | 0.812547 | 4.012275e-51 | 2.558569e-48 |
| MsG0480022960.01 | MsG0680032770.01 | 0.829090 | 6.250975e-55 | 6.332730e-52 |
| MsG0480023149.01 | MsG0680032770.01 | 0.906184 | 1.944866e-80 | 3.256265e-76 |
| MsG0480023399.01 | MsG0680032770.01 | 0.902890 | 6.103210e-79 | 8.826433e-75 |
| MsG0480023467.01 | MsG0680032770.01 | 0.919891 | 2.551487e-87 | 8.391326e-83 |
| MsG0480023559.01 | MsG0680032770.01 | 0.819767 | 9.771555e-53 | 7.589123e-50 |
| MsG0480023771.01 | MsG0680032770.01 | 0.839096 | 1.944194e-57 | 2.656818e-54 |
| MsG0480023970.01 | MsG0680032770.01 | 0.824566 | 7.528713e-54 | 6.693834e-51 |
| MsG0580024369.01 | MsG0680032770.01 | 0.869266 | 3.522194e-66 | 1.313522e-62 |
| MsG0580024754.01 | MsG0680032770.01 | 0.848013 | 8.034378e-60 | 1.454208e-56 |
| MsG0580025408.01 | MsG0680032770.01 | 0.813521 | 2.454217e-51 | 1.606361e-48 |
| MsG0380015027.01 | MsG0680032770.01 | 0.801925 | 7.152816e-49 | 3.458295e-46 |
| MsG0380016389.01 | MsG0680032770.01 | 0.842654 | 2.266760e-58 | 3.459777e-55 |
| MsG0380016577.01 | MsG0680032770.01 | 0.843015 | 1.816724e-58 | 2.804421e-55 |
| MsG0380016733.01 | MsG0680032770.01 | 0.866339 | 3.065405e-65 | 1.029587e-61 |
| MsG0380016775.01 | MsG0680032770.01 | 0.804904 | 1.726660e-49 | 9.011293e-47 |
| MsG0380017382.01 | MsG0680032770.01 | 0.890070 | 1.373751e-73 | 1.137546e-69 |
| MsG0380017556.01 | MsG0680032770.01 | 0.808030 | 3.783922e-50 | 2.140382e-47 |
| MsG0480018084.01 | MsG0680032770.01 | 0.893023 | 9.242717e-75 | 8.657637e-71 |
| MsG0480018252.01 | MsG0680032770.01 | 0.823633 | 1.246682e-53 | 1.079450e-50 |
| MsG0580026157.01 | MsG0680032770.01 | 0.816074 | 6.669981e-52 | 4.679597e-49 |
| MsG0580027043.01 | MsG0680032770.01 | 0.894211 | 3.053046e-75 | 3.006815e-71 |
| MsG0580029132.01 | MsG0680032770.01 | 0.918133 | 2.269039e-86 | 6.800190e-82 |
| MsG0580029300.01 | MsG0680032770.01 | 0.827574 | 1.451172e-54 | 1.406377e-51 |
| MsG0580029703.01 | MsG0680032770.01 | 0.806244 | 9.038387e-50 | 4.881795e-47 |
| MsG0280006741.01 | MsG0680032770.01 | 0.800761 | 1.238144e-48 | 5.812441e-46 |
| MsG0280006819.01 | MsG0680032770.01 | 0.884333 | 2.097855e-71 | 1.378524e-67 |
| MsG0280006836.01 | MsG0680032770.01 | 0.876775 | 1.067979e-68 | 5.243009e-65 |
| MsG0280006993.01 | MsG0680032770.01 | 0.829977 | 3.806356e-55 | 3.957237e-52 |
| MsG0280007634.01 | MsG0680032770.01 | 0.869198 | 3.705989e-66 | 1.378826e-62 |
| MsG0280008118.01 | MsG0680032770.01 | 0.838350 | 3.029554e-57 | 4.046760e-54 |
| MsG0280009111.01 | MsG0680032770.01 | 0.805878 | 1.078932e-49 | 5.773070e-47 |
| MsG0280009372.01 | MsG0680032770.01 | 0.852897 | 3.414968e-61 | 7.244415e-58 |
| MsG0280009375.01 | MsG0680032770.01 | 0.888952 | 3.737270e-73 | 2.956570e-69 |
| MsG0280009591.01 | MsG0680032770.01 | 0.825385 | 4.824587e-54 | 4.390739e-51 |
| MsG0280010383.01 | MsG0680032770.01 | 0.890214 | 1.205624e-73 | 1.004383e-69 |
| MsG0280010495.01 | MsG0680032770.01 | 0.901795 | 1.865981e-78 | 2.561993e-74 |
| MsG0280010525.01 | MsG0680032770.01 | 0.837793 | 4.213940e-57 | 5.534491e-54 |
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0680032770.01 | MsG0380018056.01 | PPI |
| MsG0680032770.01 | MsG0180005426.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680032770.01.T01 | MTR_1g100960 | 96.396 | 111 | 3 | 1 | 1 | 110 | 1 | 111 | 1.12e-70 | 206 |
| MsG0680032770.01.T01 | MTR_6g053730 | 97.297 | 111 | 2 | 1 | 1 | 110 | 1 | 111 | 3.71e-70 | 205 |
| MsG0680032770.01.T01 | MTR_1g100960 | 97.030 | 101 | 3 | 0 | 1 | 101 | 1 | 101 | 2.80e-66 | 195 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680032770.01.T01 | AT3G53740 | 80.000 | 110 | 22 | 0 | 1 | 110 | 1 | 110 | 2.19e-57 | 173 |
| MsG0680032770.01.T01 | AT3G53740 | 80.000 | 110 | 22 | 0 | 1 | 110 | 1 | 110 | 2.19e-57 | 173 |
| MsG0680032770.01.T01 | AT3G53740 | 80.000 | 110 | 22 | 0 | 1 | 110 | 1 | 110 | 2.19e-57 | 173 |
| MsG0680032770.01.T01 | AT5G02450 | 83.654 | 104 | 17 | 0 | 7 | 110 | 3 | 106 | 5.66e-57 | 172 |
| MsG0680032770.01.T01 | AT2G37600 | 82.692 | 104 | 17 | 1 | 8 | 110 | 8 | 111 | 5.16e-55 | 167 |
| MsG0680032770.01.T01 | AT2G37600 | 82.692 | 104 | 17 | 1 | 8 | 110 | 8 | 111 | 5.16e-55 | 167 |
| MsG0680032770.01.T01 | AT3G53740 | 71.818 | 110 | 22 | 1 | 1 | 110 | 1 | 101 | 4.61e-48 | 149 |
Find 47 sgRNAs with CRISPR-Local
Find 129 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTTCTTCTTGGCACGTTTA+TGG | 0.140365 | 6:+49403132 | None:intergenic |
| CTTCTTCTTGGCACGTTTAT+GGG | 0.210182 | 6:+49403133 | None:intergenic |
| TACCTGCGGTAGATTGAATT+AGG | 0.234420 | 6:+49405057 | None:intergenic |
| GAATTTGGGTTTCAGGAAAA+TGG | 0.241395 | 6:-49404900 | MsG0680032770.01.T01:intron |
| TTATTTCATTCCATGTTAAC+TGG | 0.291847 | 6:-49402927 | MsG0680032770.01.T01:three_prime_UTR |
| CATCTCCTCACGCTTCTTCT+TGG | 0.294580 | 6:+49403121 | None:intergenic |
| TCATACCCCTTTACGGTTAG+AGG | 0.313119 | 6:+49404796 | None:intergenic |
| CCTTTACGGTTAGAGGGTTT+AGG | 0.348138 | 6:+49404803 | None:intergenic |
| CTAAACCCTCTAACCGTAAA+GGG | 0.352080 | 6:-49404802 | MsG0680032770.01.T01:CDS |
| TTGCGCAGGGCTGGTGGAGC+AGG | 0.374917 | 6:-49402974 | MsG0680032770.01.T01:intron |
| AAGAGCAATGTTGGATAGAA+AGG | 0.426788 | 6:+49402760 | None:intergenic |
| ATGGGTTCCGAGCTTTCTCT+TGG | 0.449681 | 6:+49403151 | None:intergenic |
| GGCGCCGAAGCAGCCAAGTA+CGG | 0.452682 | 6:-49404879 | MsG0680032770.01.T01:CDS |
| GAAGAGCAAACCTCATCTTT+CGG | 0.452731 | 6:+49403087 | None:intergenic |
| AACCTCATCCGCGAGGTAGC+TGG | 0.486512 | 6:-49403245 | MsG0680032770.01.T01:CDS |
| AGACCCGTACTTGGCTGCTT+CGG | 0.489391 | 6:+49404875 | None:intergenic |
| GCGCCGAAGCAGCCAAGTAC+GGG | 0.490664 | 6:-49404878 | MsG0680032770.01.T01:CDS |
| ATCACTGAATTGCTGAAGGT+TGG | 0.491376 | 6:-49403200 | MsG0680032770.01.T01:CDS |
| TGAAGGTTGGAAAGGATAAG+AGG | 0.498071 | 6:-49403187 | MsG0680032770.01.T01:CDS |
| TGATTTATGAAAAGTACCAT+TGG | 0.498649 | 6:-49402818 | MsG0680032770.01.T01:three_prime_UTR |
| CCTAAACCCTCTAACCGTAA+AGG | 0.502204 | 6:-49404803 | MsG0680032770.01.T01:CDS |
| GCAAGCGTGTGCACTTTGTA+AGG | 0.505489 | 6:-49403268 | MsG0680032770.01.T01:CDS |
| AGCCAGCTACCTCGCGGATG+AGG | 0.509753 | 6:+49403243 | None:intergenic |
| TCAGTGATACGCTTCTCATA+AGG | 0.516197 | 6:+49403215 | None:intergenic |
| TAACAACGCAAGAGCAATGT+TGG | 0.522284 | 6:+49402751 | None:intergenic |
| CATACCCCTTTACGGTTAGA+GGG | 0.527975 | 6:+49404797 | None:intergenic |
| AGAGCAATGTTGGATAGAAA+GGG | 0.548129 | 6:+49402761 | None:intergenic |
| TGTTGTTACTAAGAAGGAGT+TGG | 0.562117 | 6:-49404828 | MsG0680032770.01.T01:CDS |
| ACCCTAATTCAATCTACCGC+AGG | 0.563040 | 6:-49405059 | None:intergenic |
| TGAATTGCTGAAGGTTGGAA+AGG | 0.563716 | 6:-49403195 | MsG0680032770.01.T01:CDS |
| GGGACATGTTGTTACTAAGA+AGG | 0.568112 | 6:-49404834 | MsG0680032770.01.T01:CDS |
| CATTATCATAAGCAATGTCA+AGG | 0.568912 | 6:+49402703 | None:intergenic |
| AAAGTTGCCAAGAGAAAGCT+CGG | 0.571574 | 6:-49403158 | MsG0680032770.01.T01:CDS |
| AAAACTTGTCCTTCAAAACA+TGG | 0.571599 | 6:+49402898 | None:intergenic |
| AATGTCAAGGTTGCAGACAA+AGG | 0.597524 | 6:+49402716 | None:intergenic |
| CCTCATCTTTCGGAGGACGT+TGG | 0.608911 | 6:+49403097 | None:intergenic |
| ATGGGTACATCCAGTTAACA+TGG | 0.610367 | 6:+49402917 | None:intergenic |
| GAAGGTTGGAAAGGATAAGA+GGG | 0.613741 | 6:-49403186 | MsG0680032770.01.T01:CDS |
| GCGTATCACTGAATTGCTGA+AGG | 0.627654 | 6:-49403204 | MsG0680032770.01.T01:CDS |
| CATAAAACAGAATAATCCAA+TGG | 0.631505 | 6:+49402802 | None:intergenic |
| AAACTTGTCCTTCAAAACAT+GGG | 0.648003 | 6:+49402899 | None:intergenic |
| TAAACCCTCTAACCGTAAAG+GGG | 0.650092 | 6:-49404801 | MsG0680032770.01.T01:intron |
| CCAACGTCCTCCGAAAGATG+AGG | 0.657638 | 6:-49403097 | MsG0680032770.01.T01:intron |
| GAGCAAACCTCATCTTTCGG+AGG | 0.683152 | 6:+49403090 | None:intergenic |
| GTGCAAAGCCAGCTACCTCG+CGG | 0.704628 | 6:+49403237 | None:intergenic |
| ACGTGCCAAGAAGAAGCGTG+AGG | 0.711062 | 6:-49403126 | MsG0680032770.01.T01:CDS |
| TGTAAGGAACCTCATCCGCG+AGG | 0.767870 | 6:-49403252 | MsG0680032770.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATTTAAAAGACATTATTT+GGG | - | Chr6:49404261-49404280 | MsG0680032770.01.T01:intron | 10.0% |
| !! | CTTATTTAAAAGACATTATT+TGG | - | Chr6:49404260-49404279 | MsG0680032770.01.T01:intron | 15.0% |
| !! | TAAGAAAATTAACGAAAATA+TGG | + | Chr6:49404244-49404263 | None:intergenic | 15.0% |
| !!! | AGAGTAAAATTAAATTGTTT+TGG | - | Chr6:49403806-49403825 | MsG0680032770.01.T01:intron | 15.0% |
| !!! | GGTATGATTTTTTATTTTTA+GGG | - | Chr6:49402982-49403001 | MsG0680032770.01.T01:intron | 15.0% |
| !!! | TTATTATTAAACTTGTTACT+TGG | - | Chr6:49404732-49404751 | MsG0680032770.01.T01:intron | 15.0% |
| !!! | TTTGATTGATTTATGAATTT+GGG | - | Chr6:49402848-49402867 | MsG0680032770.01.T01:three_prime_UTR | 15.0% |
| !!! | TTTTGATTGATTTATGAATT+TGG | - | Chr6:49402847-49402866 | MsG0680032770.01.T01:three_prime_UTR | 15.0% |
| !! | AAATGAATCTAAGAGAAAAA+TGG | + | Chr6:49402807-49402826 | None:intergenic | 20.0% |
| !! | AAGTTTAATAATAAAACACC+TGG | + | Chr6:49404726-49404745 | None:intergenic | 20.0% |
| !! | AATGAAATTGTTGATATTCT+GGG | - | Chr6:49404405-49404424 | MsG0680032770.01.T01:intron | 20.0% |
| !! | AGTTTAATAATAAAACACCT+GGG | + | Chr6:49404725-49404744 | None:intergenic | 20.0% |
| !! | ATAGTACTATGTAATATATC+TGG | - | Chr6:49404292-49404311 | MsG0680032770.01.T01:intron | 20.0% |
| !! | CAATAATCTGAGTAAATTAA+TGG | - | Chr6:49403172-49403191 | MsG0680032770.01.T01:CDS | 20.0% |
| !! | GTTATTAATTGTAATAGTGA+AGG | - | Chr6:49403502-49403521 | MsG0680032770.01.T01:intron | 20.0% |
| !! | TAATGAAATTGTTGATATTC+TGG | - | Chr6:49404404-49404423 | MsG0680032770.01.T01:intron | 20.0% |
| !! | TGGTTAATGTTTGAATTTAT+TGG | - | Chr6:49403377-49403396 | MsG0680032770.01.T01:intron | 20.0% |
| !! | TTTGATGTTTAGTTAACTTT+CGG | - | Chr6:49403419-49403438 | MsG0680032770.01.T01:intron | 20.0% |
| !!! | AATGAGTATCTTTTTTAAGA+TGG | - | Chr6:49403076-49403095 | MsG0680032770.01.T01:intron | 20.0% |
| !!! | AGTTTAGTTTTAAGTTTTGT+TGG | - | Chr6:49403607-49403626 | MsG0680032770.01.T01:intron | 20.0% |
| !!! | ATTGTTCATTTTTCATCTAA+TGG | + | Chr6:49403686-49403705 | None:intergenic | 20.0% |
| !!! | GAGGAATTTTTTTTATAGTT+AGG | - | Chr6:49403707-49403726 | MsG0680032770.01.T01:intron | 20.0% |
| !!! | GGGTATGATTTTTTATTTTT+AGG | - | Chr6:49402981-49403000 | MsG0680032770.01.T01:intron | 20.0% |
| !!! | TCATTTTCAACAAAGAATTT+GGG | - | Chr6:49402821-49402840 | MsG0680032770.01.T01:three_prime_UTR | 20.0% |
| !!! | TTCATTTTCAACAAAGAATT+TGG | - | Chr6:49402820-49402839 | MsG0680032770.01.T01:three_prime_UTR | 20.0% |
| !!! | TTTACAATAACATGGAATTT+TGG | - | Chr6:49404040-49404059 | MsG0680032770.01.T01:intron | 20.0% |
| !!! | TTTTGATTTTCATTTGTGTT+TGG | - | Chr6:49403112-49403131 | MsG0680032770.01.T01:CDS | 20.0% |
| ! | AATAAGTTGTTTATCCAAAC+AGG | + | Chr6:49403734-49403753 | None:intergenic | 25.0% |
| ! | ACATCAAATCACATAACAAA+TGG | + | Chr6:49403992-49404011 | None:intergenic | 25.0% |
| ! | AGATGAAAAATGAACAATTG+AGG | - | Chr6:49403688-49403707 | MsG0680032770.01.T01:intron | 25.0% |
| ! | AGTTTCAATTGAAATCCAAA+GGG | + | Chr6:49404081-49404100 | None:intergenic | 25.0% |
| ! | ATAAGTTGTTTATCCAAACA+GGG | + | Chr6:49403733-49403752 | None:intergenic | 25.0% |
| ! | ATGAAATTGATTGAAGGAAT+TGG | + | Chr6:49402762-49402781 | None:intergenic | 25.0% |
| ! | CATAAAACAGAATAATCCAA+TGG | + | Chr6:49404963-49404982 | None:intergenic | 25.0% |
| ! | TAAAAAATCATACCCCTTTA+CGG | + | Chr6:49402976-49402995 | None:intergenic | 25.0% |
| ! | TAACTCAAATACATTCAATG+AGG | + | Chr6:49404182-49404201 | None:intergenic | 25.0% |
| ! | TAGTTTCAATTGAAATCCAA+AGG | + | Chr6:49404082-49404101 | None:intergenic | 25.0% |
| ! | TTATCATTGATACTGTTCTT+TGG | - | Chr6:49404433-49404452 | MsG0680032770.01.T01:intron | 25.0% |
| ! | TTATTTCATTCCATGTTAAC+TGG | - | Chr6:49404835-49404854 | MsG0680032770.01.T01:CDS | 25.0% |
| ! | TTGATGTTTAGTTAACTTTC+GGG | - | Chr6:49403420-49403439 | MsG0680032770.01.T01:intron | 25.0% |
| !! | ATATATCTGGAGTCAAAATA+TGG | - | Chr6:49404305-49404324 | MsG0680032770.01.T01:intron | 25.0% |
| !! | ATGATGATGAAATTGATTGA+AGG | + | Chr6:49402768-49402787 | None:intergenic | 25.0% |
| !! | GTTATTGTTCATTTTGTGTT+TGG | - | Chr6:49403050-49403069 | MsG0680032770.01.T01:intron | 25.0% |
| !! | TGAAACTATCTTGTGATTTT+TGG | - | Chr6:49404094-49404113 | MsG0680032770.01.T01:intron | 25.0% |
| !!! | TATCTTTTTAATTTTGCGCA+GGG | - | Chr6:49404775-49404794 | MsG0680032770.01.T01:intron | 25.0% |
| !!! | TGATTTATGAAAAGTACCAT+TGG | - | Chr6:49404944-49404963 | MsG0680032770.01.T01:intron | 25.0% |
| !!! | TTTTGTTTATTATACATCCC+AGG | - | Chr6:49404705-49404724 | MsG0680032770.01.T01:intron | 25.0% |
| AAAACTTGTCCTTCAAAACA+TGG | + | Chr6:49404867-49404886 | None:intergenic | 30.0% | |
| AAACTTGTCCTTCAAAACAT+GGG | + | Chr6:49404866-49404885 | None:intergenic | 30.0% | |
| AAGAGGAGAGAGAAAAAATT+AGG | + | Chr6:49402739-49402758 | None:intergenic | 30.0% | |
| AGAGAGAAAAAATTAGGGTT+TGG | + | Chr6:49402733-49402752 | None:intergenic | 30.0% | |
| AGAGGAGAGAGAAAAAATTA+GGG | + | Chr6:49402738-49402757 | None:intergenic | 30.0% | |
| ATATGAAAATGCAACAGCTT+TGG | - | Chr6:49404207-49404226 | MsG0680032770.01.T01:intron | 30.0% | |
| ATCTAAGAGAAAAATGGTAG+AGG | + | Chr6:49402801-49402820 | None:intergenic | 30.0% | |
| ! | AAGCTGTTGCATTTTCATAT+AGG | + | Chr6:49404207-49404226 | None:intergenic | 30.0% |
| ! | CGTCTTTTGAGCTAATTTTT+GGG | - | Chr6:49403244-49403263 | MsG0680032770.01.T01:CDS | 30.0% |
| ! | CTTTTTGTTGGATTGAACAA+GGG | - | Chr6:49402908-49402927 | MsG0680032770.01.T01:three_prime_UTR | 30.0% |
| ! | GATTTATGAATTTGGGTTTC+AGG | - | Chr6:49402855-49402874 | MsG0680032770.01.T01:three_prime_UTR | 30.0% |
| ! | GTTTAGATTTTGCTTTGTGT+TGG | - | Chr6:49403553-49403572 | MsG0680032770.01.T01:intron | 30.0% |
| ! | TCGTCTTTTGAGCTAATTTT+TGG | - | Chr6:49403243-49403262 | MsG0680032770.01.T01:CDS | 30.0% |
| ! | TCTTTTTGTTGGATTGAACA+AGG | - | Chr6:49402907-49402926 | MsG0680032770.01.T01:three_prime_UTR | 30.0% |
| !! | CTATCTTGTGATTTTTGGAA+TGG | - | Chr6:49404099-49404118 | MsG0680032770.01.T01:intron | 30.0% |
| !! | TTAGATTTTAGTGATGCGTT+TGG | - | Chr6:49403006-49403025 | MsG0680032770.01.T01:intron | 30.0% |
| !!! | AGTCTTTATTTTTTGCCCTT+TGG | - | Chr6:49404063-49404082 | MsG0680032770.01.T01:intron | 30.0% |
| !!! | CTATCTTTTTAATTTTGCGC+AGG | - | Chr6:49404774-49404793 | MsG0680032770.01.T01:intron | 30.0% |
| !!! | GTGACTGTTTGTTTTGATTT+TGG | - | Chr6:49403357-49403376 | MsG0680032770.01.T01:intron | 30.0% |
| !!! | GTTTTTTATTGTCATAGCGA+AGG | - | Chr6:49403321-49403340 | MsG0680032770.01.T01:intron | 30.0% |
| AAGAGCAATGTTGGATAGAA+AGG | + | Chr6:49405005-49405024 | None:intergenic | 35.0% | |
| AGAGCAATGTTGGATAGAAA+GGG | + | Chr6:49405004-49405023 | None:intergenic | 35.0% | |
| TCAAATAAGCTCATCCAAAC+AGG | - | Chr6:49403966-49403985 | MsG0680032770.01.T01:intron | 35.0% | |
| TGTTGTTACTAAGAAGGAGT+TGG | - | Chr6:49402934-49402953 | MsG0680032770.01.T01:three_prime_UTR | 35.0% | |
| TTGATTGAAGGAATTGGAAG+AGG | + | Chr6:49402756-49402775 | None:intergenic | 35.0% | |
| ! | CATTTTCGTTGCAATGCAAA+TGG | - | Chr6:49403653-49403672 | MsG0680032770.01.T01:intron | 35.0% |
| ! | GAATTTGGGTTTCAGGAAAA+TGG | - | Chr6:49402862-49402881 | MsG0680032770.01.T01:three_prime_UTR | 35.0% |
| ! | GGCACTGTTTTACAATAACA+TGG | - | Chr6:49404032-49404051 | MsG0680032770.01.T01:intron | 35.0% |
| ! | TCTGTTTTATGCTAGAAACG+AGG | - | Chr6:49404972-49404991 | MsG0680032770.01.T01:intron | 35.0% |
| ! | TTTTATAGTTAGGCCCTGTT+TGG | - | Chr6:49403717-49403736 | MsG0680032770.01.T01:intron | 35.0% |
| AAAGTTGCCAAGAGAAAGCT+CGG | - | Chr6:49404604-49404623 | MsG0680032770.01.T01:intron | 40.0% | |
| AATGTCAAGGTTGCAGACAA+AGG | + | Chr6:49405049-49405068 | None:intergenic | 40.0% | |
| AGATCGTTTGTGAGACTGTT+TGG | + | Chr6:49403930-49403949 | None:intergenic | 40.0% | |
| ATCACTGAATTGCTGAAGGT+TGG | - | Chr6:49404562-49404581 | MsG0680032770.01.T01:intron | 40.0% | |
| ATGGGTACATCCAGTTAACA+TGG | + | Chr6:49404848-49404867 | None:intergenic | 40.0% | |
| CACATAACAAATGGCCTGTT+TGG | + | Chr6:49403983-49404002 | None:intergenic | 40.0% | |
| CTAAACCCTCTAACCGTAAA+GGG | - | Chr6:49402960-49402979 | MsG0680032770.01.T01:CDS | 40.0% | |
| CTTCTTCTTGGCACGTTTAT+GGG | + | Chr6:49404632-49404651 | None:intergenic | 40.0% | |
| GAAGAGCAAACCTCATCTTT+CGG | + | Chr6:49404678-49404697 | None:intergenic | 40.0% | |
| GAAGGTTGGAAAGGATAAGA+GGG | - | Chr6:49404576-49404595 | MsG0680032770.01.T01:intron | 40.0% | |
| GAGATTAGTGATGCATTTGC+TGG | - | Chr6:49403447-49403466 | MsG0680032770.01.T01:intron | 40.0% | |
| GATCGTTTGTGAGACTGTTT+GGG | + | Chr6:49403929-49403948 | None:intergenic | 40.0% | |
| GGGACATGTTGTTACTAAGA+AGG | - | Chr6:49402928-49402947 | MsG0680032770.01.T01:three_prime_UTR | 40.0% | |
| TAAACCCTCTAACCGTAAAG+GGG | - | Chr6:49402961-49402980 | MsG0680032770.01.T01:CDS | 40.0% | |
| TAACAACGCAAGAGCAATGT+TGG | + | Chr6:49405014-49405033 | None:intergenic | 40.0% | |
| TCAGTGATACGCTTCTCATA+AGG | + | Chr6:49404550-49404569 | None:intergenic | 40.0% | |
| TGAAGGTTGGAAAGGATAAG+AGG | - | Chr6:49404575-49404594 | MsG0680032770.01.T01:intron | 40.0% | |
| TGAATTGCTGAAGGTTGGAA+AGG | - | Chr6:49404567-49404586 | MsG0680032770.01.T01:intron | 40.0% | |
| TTGGTCCTAGTCCTAATATG+CGG | - | Chr6:49404452-49404471 | MsG0680032770.01.T01:intron | 40.0% | |
| ! | ATTAGGGTTTGGTTTACCTG+CGG | + | Chr6:49402722-49402741 | None:intergenic | 40.0% |
| ! | TGAGTTGAGTTGTAGAATGC+AGG | - | Chr6:49404011-49404030 | MsG0680032770.01.T01:intron | 40.0% |
| !! | GCTGTTTTCATGAGCTGTTT+TGG | - | Chr6:49403841-49403860 | MsG0680032770.01.T01:intron | 40.0% |
| !! | TGGATGTACCCATGTTTTGA+AGG | - | Chr6:49404855-49404874 | MsG0680032770.01.T01:CDS | 40.0% |
| !!! | GAGCTAATTTTTGGGTTCAG+AGG | - | Chr6:49403252-49403271 | MsG0680032770.01.T01:CDS | 40.0% |
| !!! | GCTTGCTAGTTTTCTGTTCA+AGG | + | Chr6:49404480-49404499 | None:intergenic | 40.0% |
| !!! | TTTTTAATTTTGCGCAGGGC+TGG | - | Chr6:49404779-49404798 | MsG0680032770.01.T01:intron | 40.0% |
| CATACCCCTTTACGGTTAGA+GGG | + | Chr6:49402968-49402987 | None:intergenic | 45.0% | |
| CCAACAAAAAGACCCGTACT+TGG | + | Chr6:49402899-49402918 | None:intergenic | 45.0% | |
| CCTAAACCCTCTAACCGTAA+AGG | - | Chr6:49402959-49402978 | MsG0680032770.01.T01:CDS | 45.0% | |
| CCTTTACGGTTAGAGGGTTT+AGG | + | Chr6:49402962-49402981 | None:intergenic | 45.0% | |
| GCGTATCACTGAATTGCTGA+AGG | - | Chr6:49404558-49404577 | MsG0680032770.01.T01:intron | 45.0% | |
| GCTTCTTCTTGGCACGTTTA+TGG | + | Chr6:49404633-49404652 | None:intergenic | 45.0% | |
| TCATACCCCTTTACGGTTAG+AGG | + | Chr6:49402969-49402988 | None:intergenic | 45.0% | |
| ! | CCAAGTACGGGTCTTTTTGT+TGG | - | Chr6:49402896-49402915 | MsG0680032770.01.T01:three_prime_UTR | 45.0% |
| !! | TGTTCAAGGCACCGCATATT+AGG | + | Chr6:49404466-49404485 | None:intergenic | 45.0% |
| ATGGGTTCCGAGCTTTCTCT+TGG | + | Chr6:49404614-49404633 | None:intergenic | 50.0% | |
| CATCTCCTCACGCTTCTTCT+TGG | + | Chr6:49404644-49404663 | None:intergenic | 50.0% | |
| GAGCAAACCTCATCTTTCGG+AGG | + | Chr6:49404675-49404694 | None:intergenic | 50.0% | |
| GCAAGCGTGTGCACTTTGTA+AGG | - | Chr6:49404494-49404513 | MsG0680032770.01.T01:intron | 50.0% | |
| ! | AGGCACCGCATATTAGGACT+AGG | + | Chr6:49404460-49404479 | None:intergenic | 50.0% |
| ! | TTAATTTTGCGCAGGGCTGG+TGG | - | Chr6:49404782-49404801 | MsG0680032770.01.T01:intron | 50.0% |
| AGACCCGTACTTGGCTGCTT+CGG | + | Chr6:49402890-49402909 | None:intergenic | 55.0% | |
| CCAACGTCCTCCGAAAGATG+AGG | - | Chr6:49404665-49404684 | MsG0680032770.01.T01:intron | 55.0% | |
| CCTCATCTTTCGGAGGACGT+TGG | + | Chr6:49404668-49404687 | None:intergenic | 55.0% | |
| TGTAAGGAACCTCATCCGCG+AGG | - | Chr6:49404510-49404529 | MsG0680032770.01.T01:intron | 55.0% | |
| ! | ACGTGCCAAGAAGAAGCGTG+AGG | - | Chr6:49404636-49404655 | MsG0680032770.01.T01:intron | 55.0% |
| AACCTCATCCGCGAGGTAGC+TGG | - | Chr6:49404517-49404536 | MsG0680032770.01.T01:intron | 60.0% | |
| GTGCAAAGCCAGCTACCTCG+CGG | + | Chr6:49404528-49404547 | None:intergenic | 60.0% | |
| AGCCAGCTACCTCGCGGATG+AGG | + | Chr6:49404522-49404541 | None:intergenic | 65.0% | |
| GCGCCGAAGCAGCCAAGTAC+GGG | - | Chr6:49402884-49402903 | MsG0680032770.01.T01:three_prime_UTR | 65.0% | |
| ! | GGCGCCGAAGCAGCCAAGTA+CGG | - | Chr6:49402883-49402902 | MsG0680032770.01.T01:three_prime_UTR | 65.0% |
| ! | TTGCGCAGGGCTGGTGGAGC+AGG | - | Chr6:49404788-49404807 | MsG0680032770.01.T01:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr6 | gene | 49402708 | 49405076 | 49402708 | ID=MsG0680032770.01;Name=MsG0680032770.01 |
| Chr6 | mRNA | 49402708 | 49405076 | 49402708 | ID=MsG0680032770.01.T01;Parent=MsG0680032770.01;Name=MsG0680032770.01.T01;_AED=0.46;_eAED=0.46;_QI=21|1|1|1|0.66|0.75|4|250|110 |
| Chr6 | exon | 49405060 | 49405076 | 49405060 | ID=MsG0680032770.01.T01:exon:13922;Parent=MsG0680032770.01.T01 |
| Chr6 | exon | 49404802 | 49404907 | 49404802 | ID=MsG0680032770.01.T01:exon:13923;Parent=MsG0680032770.01.T01 |
| Chr6 | exon | 49403098 | 49403297 | 49403098 | ID=MsG0680032770.01.T01:exon:13924;Parent=MsG0680032770.01.T01 |
| Chr6 | exon | 49402708 | 49402988 | 49402708 | ID=MsG0680032770.01.T01:exon:13925;Parent=MsG0680032770.01.T01 |
| Chr6 | five_prime_UTR | 49405060 | 49405076 | 49405060 | ID=MsG0680032770.01.T01:five_prime_utr;Parent=MsG0680032770.01.T01 |
| Chr6 | five_prime_UTR | 49404904 | 49404907 | 49404904 | ID=MsG0680032770.01.T01:five_prime_utr;Parent=MsG0680032770.01.T01 |
| Chr6 | CDS | 49404802 | 49404903 | 49404802 | ID=MsG0680032770.01.T01:cds;Parent=MsG0680032770.01.T01 |
| Chr6 | CDS | 49403098 | 49403297 | 49403098 | ID=MsG0680032770.01.T01:cds;Parent=MsG0680032770.01.T01 |
| Chr6 | CDS | 49402958 | 49402988 | 49402958 | ID=MsG0680032770.01.T01:cds;Parent=MsG0680032770.01.T01 |
| Chr6 | three_prime_UTR | 49402708 | 49402957 | 49402708 | ID=MsG0680032770.01.T01:three_prime_utr;Parent=MsG0680032770.01.T01 |
| Gene Sequence |
| Protein sequence |
