AlfalfaGEDB | MsG0180005366.01

M. sativa cultivar ZhongmuNo.1 / MsG0180005366.01

KEGG: K02964
GO: GO:0003676 GO:0003723 GO:0003735 GO:0005622 GO:0005840 GO:0006412
PFAM: PF00416

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180005366.01.T01	XP_003592049.1	100	152	0	0	1	152	1	152	5.57E-108	314

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180005366.01.T01	P34788	92.763	152	11	0	1	152	1	152	1.93E-104	298

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180005366.01.T01	B7FMJ8	100.000	152	0	0	1	152	1	152	2.66e-108	314

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048687.01	MsG0180005366.01	0.831677	1.457335e-55	1.592824e-52
MsG0080048971.01	MsG0180005366.01	0.852475	4.506279e-61	9.426624e-58
MsG0180003115.01	MsG0180005366.01	0.807560	4.762079e-50	2.660725e-47
MsG0180003313.01	MsG0180005366.01	0.844002	9.896517e-59	1.576132e-55
MsG0180003612.01	MsG0180005366.01	0.852917	3.369963e-61	7.153186e-58
MsG0180003729.01	MsG0180005366.01	0.827172	1.811471e-54	1.735318e-51
MsG0180003793.01	MsG0180005366.01	0.844214	8.683881e-59	1.392182e-55
MsG0180004129.01	MsG0180005366.01	0.806346	8.601936e-50	4.657857e-47
MsG0180004130.01	MsG0180005366.01	0.802550	5.319930e-49	2.613347e-46
MsG0180004607.01	MsG0180005366.01	0.891387	4.161694e-74	3.641228e-70
MsG0180004609.01	MsG0180005366.01	0.816818	4.544661e-52	3.253918e-49
MsG0180004622.01	MsG0180005366.01	0.883072	6.112326e-71	3.818111e-67
MsG0180004625.01	MsG0180005366.01	0.827498	1.513049e-54	1.463268e-51
MsG0180005361.01	MsG0180005366.01	0.930445	1.620568e-93	9.607631e-89
MsG0180005366.01	MsG0180005426.01	0.882044	1.448310e-70	8.688296e-67
MsG0180005366.01	MsG0280006741.01	0.820294	7.399413e-53	5.831408e-50
MsG0180005366.01	MsG0280006819.01	0.892693	1.254444e-74	1.158971e-70
MsG0180005366.01	MsG0280006836.01	0.881753	1.846241e-70	1.094688e-66
MsG0180005366.01	MsG0280007643.01	0.822745	2.009424e-53	1.696760e-50
MsG0180005366.01	MsG0280007995.01	0.809513	1.822912e-50	1.072421e-47
MsG0180005366.01	MsG0280008118.01	0.831699	1.439515e-55	1.574405e-52
MsG0180005366.01	MsG0280009375.01	0.812876	3.399777e-51	2.186624e-48
MsG0180005366.01	MsG0280010495.01	0.893126	8.398339e-75	7.901002e-71
MsG0180005366.01	MsG0280010525.01	0.835559	1.563839e-56	1.919155e-53
MsG0180005366.01	MsG0280010801.01	0.857932	1.165114e-62	2.923730e-59
MsG0180005366.01	MsG0280010995.01	0.830800	2.395265e-55	2.550620e-52
MsG0180005366.01	MsG0280011234.01	0.885456	8.004590e-72	5.497540e-68
MsG0180005366.01	MsG0280011308.01	0.826866	2.144031e-54	2.035456e-51
MsG0180005366.01	MsG0380012073.01	0.873605	1.292129e-67	5.640291e-64
MsG0180005366.01	MsG0380015494.01	0.837317	5.581613e-57	7.223102e-54
MsG0180005366.01	MsG0380016577.01	0.848496	5.906151e-60	1.086037e-56
MsG0180005366.01	MsG0380016622.01	0.830004	3.749326e-55	3.900846e-52
MsG0180005366.01	MsG0380016733.01	0.882010	1.490042e-70	8.926591e-67
MsG0180005366.01	MsG0380017382.01	0.809700	1.662340e-50	9.828387e-48
MsG0180005366.01	MsG0380017556.01	0.800382	1.479302e-48	6.878496e-46
MsG0180005366.01	MsG0480018084.01	0.858130	1.017676e-62	2.570487e-59
MsG0180005366.01	MsG0480018252.01	0.818876	1.558787e-52	1.181063e-49
MsG0180005366.01	MsG0480018477.01	0.820370	7.110028e-53	5.615308e-50
MsG0180005366.01	MsG0480020895.01	0.840805	6.970659e-58	1.004316e-54
MsG0180005366.01	MsG0480021159.01	0.873318	1.613006e-67	6.969446e-64
MsG0180005366.01	MsG0480022693.01	0.808094	3.666636e-50	2.077619e-47
MsG0180005366.01	MsG0480022764.01	0.816950	4.246626e-52	3.051814e-49
MsG0180005366.01	MsG0480022789.01	0.862100	6.438058e-64	1.863049e-60
MsG0180005366.01	MsG0480023149.01	0.878585	2.494092e-69	1.309489e-65
MsG0180005366.01	MsG0480023399.01	0.800711	1.267802e-48	5.943972e-46
MsG0180005366.01	MsG0480023467.01	0.930848	8.995047e-94	5.476028e-89
MsG0180005366.01	MsG0480023771.01	0.803435	3.490483e-49	1.753908e-46
MsG0180005366.01	MsG0480023970.01	0.881653	2.007868e-70	1.186073e-66
MsG0180005366.01	MsG0580024369.01	0.917336	6.014213e-86	1.727857e-81
MsG0180005366.01	MsG0580027043.01	0.855866	4.730325e-62	1.107741e-58
MsG0180005366.01	MsG0580029132.01	0.876873	9.874906e-69	4.865402e-65
MsG0180005366.01	MsG0580029702.01	0.854919	8.928011e-62	2.025857e-58
MsG0180005366.01	MsG0580029703.01	0.829962	3.837837e-55	3.988222e-52
MsG0180005366.01	MsG0680030408.01	0.816302	5.931641e-52	4.187667e-49
MsG0180005366.01	MsG0680031763.01	0.893513	5.861972e-75	5.600475e-71
MsG0180005366.01	MsG0680032770.01	0.852467	4.528680e-61	9.471211e-58
MsG0180005366.01	MsG0680035848.01	0.856256	3.638855e-62	8.631791e-59
MsG0180005366.01	MsG0780036547.01	0.802199	6.283414e-49	3.059095e-46
MsG0180005366.01	MsG0780036822.01	0.893602	5.393184e-75	5.173246e-71
MsG0180005366.01	MsG0780038383.01	0.803851	2.861874e-49	1.453553e-46
MsG0180005366.01	MsG0780038400.01	0.805065	1.597904e-49	8.373234e-47
MsG0180005366.01	MsG0780038587.01	0.855678	5.371236e-62	1.250035e-58
MsG0180005366.01	MsG0780040338.01	0.820759	5.787801e-53	4.620559e-50
MsG0180005366.01	MsG0780040782.01	0.870170	1.786093e-66	6.881234e-63
MsG0180005366.01	MsG0780040900.01	0.823791	1.145375e-53	9.961688e-51
MsG0180005366.01	MsG0780041058.01	0.810547	1.091593e-50	6.598898e-48
MsG0180005366.01	MsG0780041147.01	0.935241	1.155118e-96	9.193178e-92
MsG0180005366.01	MsG0780041223.01	0.846306	2.359686e-59	4.043789e-56
MsG0180005366.01	MsG0780041332.01	0.872547	2.925270e-67	1.229181e-63
MsG0180005366.01	MsG0780041519.01	0.822418	2.394496e-53	2.003116e-50
MsG0180005366.01	MsG0880041967.01	0.855620	5.584463e-62	1.297003e-58
MsG0180005366.01	MsG0880042125.01	0.888565	5.277065e-73	4.109715e-69
MsG0180005366.01	MsG0880042209.01	0.803746	3.008565e-49	1.523893e-46
MsG0180005366.01	MsG0880043517.01	0.882013	1.486911e-70	8.908929e-67
MsG0180005366.01	MsG0880043770.01	0.825221	5.274640e-54	4.778413e-51
MsG0180005366.01	MsG0880045072.01	0.844263	8.424097e-59	1.352516e-55
MsG0180005366.01	MsG0880046177.01	0.809022	2.323168e-50	1.348867e-47
MsG0180005366.01	MsG0880046444.01	0.872009	4.419164e-67	1.819457e-63
MsG0180005366.01	MsG0880046879.01	0.849228	3.700009e-60	6.968182e-57
MsG0180005366.01	MsG0880047082.01	0.908502	1.594538e-81	2.966155e-77

PPI

Gene1	Gene2	Type
MsG0180005366.01	MsG0180005361.01	PPI
MsG0180005366.01	MsG0480023627.01	PPI
MsG0780039623.01	MsG0180005366.01	PPI
MsG0180005366.01	MsG0480023627.01	PPI
MsG0180005366.01	MsG0180003897.01	PPI
MsG0180001832.01	MsG0180005366.01	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180005366.01.T01	MTR_1g098170	100.000	152	0	0	1	152	1	152	6.74e-112	314
MsG0180005366.01.T01	MTR_1g098220	100.000	152	0	0	1	152	1	152	6.74e-112	314
MsG0180005366.01.T01	MTR_6g043210	98.684	152	2	0	1	152	1	152	6.99e-111	311
MsG0180005366.01.T01	MTR_1g492710	97.945	146	3	0	1	146	794	939	1.26e-97	303
MsG0180005366.01.T01	MTR_1g098220	99.160	119	1	0	1	119	1	119	2.82e-84	243
MsG0180005366.01.T01	MTR_5g027650	95.098	102	5	0	39	140	11	112	8.25e-69	203
MsG0180005366.01.T01	MTR_5g027580	93.137	102	7	0	39	140	48	149	7.37e-68	202
MsG0180005366.01.T01	MTR_5g027670	94.382	89	5	0	52	140	1	89	2.90e-58	176
MsG0180005366.01.T01	MTR_5g027615	94.382	89	5	0	52	140	1	89	7.28e-58	175
MsG0180005366.01.T01	MTR_5g027605	94.382	89	5	0	52	140	1	89	7.28e-58	175
MsG0180005366.01.T01	MTR_5g027640	94.382	89	5	0	52	140	1	89	7.28e-58	175
MsG0180005366.01.T01	MTR_5g027600	94.382	89	5	0	52	140	1	89	7.28e-58	175
MsG0180005366.01.T01	MTR_1005s0010	94.186	86	5	0	55	140	2	87	2.60e-56	171
MsG0180005366.01.T01	MTR_4g015960	70.270	74	15	2	68	137	10	80	2.40e-27	106

Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180005366.01.T01	AT4G09800	92.763	152	11	1	152	1	152	1.96e-105	298
MsG0180005366.01.T01	AT1G34030	92.763	152	11	1	152	1	152	1.96e-105	298
MsG0180005366.01.T01	AT1G22780	92.763	152	11	1	152	1	152	1.96e-105	298

Find 48 sgRNAs with CRISPR-Local

Find 115 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CTTGGTCGGCTAGTCTAAAA+TGG	0.337255	1:+90873597	MsG0180005366.01.T01:exon
CAGCTTCATGTCAAGTTGAT+TGG	0.350481	1:-90874154	None:intergenic
CATGAAGCTGAGGGATGATT+TGG	0.353151	1:+90874167	MsG0180005366.01.T01:CDS
TTTCCTATACAGACTTTGTA+TGG	0.367358	1:+90875178	MsG0180005366.01.T01:three_prime_UTR
ATCGTGGATTGAGGCACTAC+TGG	0.374036	1:+90875011	MsG0180005366.01.T01:CDS
TCCTCTGCGGCCAGTAGTCT+TGG	0.415117	1:-90875059	None:intergenic
CAACCATACAAAGTCTGTAT+AGG	0.422779	1:-90875181	None:intergenic
TCTTATTTGTTGAATGATGT+TGG	0.434026	1:+90875259	MsG0180005366.01.T01:three_prime_UTR
TACTGGGGCCTTCGTGTTCG+TGG	0.449083	1:+90875028	MsG0180005366.01.T01:CDS
ATGACCTCAATCAAGGGTAT+TGG	0.454252	1:+90873789	MsG0180005366.01.T01:CDS
GTTCGCAATGACCTCAATCA+AGG	0.479686	1:+90873782	MsG0180005366.01.T01:CDS
GTCAATTCAAGGTTCCAGAT+TGG	0.495981	1:+90874079	MsG0180005366.01.T01:CDS
CGCTAACATCTGCTGTAAGA+AGG	0.503592	1:+90873821	MsG0180005366.01.T01:CDS
TGCGAATCCTCGTCAATTCA+AGG	0.503849	1:+90874068	MsG0180005366.01.T01:CDS
TTTCTATGTTAAGAACCAAC+GGG	0.515416	1:-90875290	None:intergenic
TGGAGAGACTCAAGAAGATC+CGG	0.515884	1:+90874187	MsG0180005366.01.T01:CDS
TCGTGGATTGAGGCACTACT+GGG	0.516130	1:+90875012	MsG0180005366.01.T01:CDS
GAACAGAAAGAAGGATTACA+AGG	0.525479	1:+90874107	MsG0180005366.01.T01:CDS
CACAGCGACACACACACCCT+TGG	0.542411	1:+90873547	MsG0180005366.01.T01:five_prime_UTR
CCTTCCAATACCCTTGATTG+AGG	0.543469	1:-90873793	None:intergenic
AGCGACACACACACCCTTGG+CGG	0.551294	1:+90873550	MsG0180005366.01.T01:five_prime_UTR
GGTCAGCATACCAAGACTAC+TGG	0.555192	1:+90875049	MsG0180005366.01.T01:CDS
ATGTTGGTGTTTATTCCCGT+TGG	0.559550	1:+90875275	MsG0180005366.01.T01:three_prime_UTR
CGACCAAGGTTCACTGTGAA+CGG	0.561670	1:-90873582	None:intergenic
AACGGTGATGACTGCCGCCA+AGG	0.561805	1:-90873564	None:intergenic
AGAAAGAAGGATTACAAGGA+TGG	0.565673	1:+90874111	MsG0180005366.01.T01:CDS
CGTTCACAGTGAACCTTGGT+CGG	0.565860	1:+90873583	MsG0180005366.01.T01:five_prime_UTR
ATTTCTATGTTAAGAACCAA+CGG	0.578772	1:-90875291	None:intergenic
TGAATTGAGTGCCGCAGAGT+TGG	0.583506	1:+90874026	MsG0180005366.01.T01:CDS
ACGGTGATGACTGCCGCCAA+GGG	0.587269	1:-90873563	None:intergenic
ATCAACTTGACATGAAGCTG+AGG	0.604543	1:+90874157	MsG0180005366.01.T01:CDS
ACCAAGACTACTGGCCGCAG+AGG	0.620084	1:+90875058	MsG0180005366.01.T01:CDS
GTTGGATAATATTATGACAG+TGG	0.620536	1:+90874044	MsG0180005366.01.T01:CDS
TTCGCAATGACCTCAATCAA+GGG	0.622158	1:+90873783	MsG0180005366.01.T01:CDS
TCACCGTTCACAGTGAACCT+TGG	0.622608	1:+90873579	MsG0180005366.01.T01:five_prime_UTR
GGCCGCAGAGGAAAGACAGT+TGG	0.623790	1:+90875070	MsG0180005366.01.T01:CDS
GTGTTGAACACAAATGTCGA+TGG	0.634706	1:+90873744	MsG0180005366.01.T01:CDS
TCAACTTGACATGAAGCTGA+GGG	0.637423	1:+90874158	MsG0180005366.01.T01:CDS
GCAGTAATCATCGTGGATTG+AGG	0.637806	1:+90875002	MsG0180005366.01.T01:intron
CTGTTATGCAGTAATCATCG+TGG	0.641883	1:+90874995	MsG0180005366.01.T01:intron
CCTCAATCAAGGGTATTGGA+AGG	0.644293	1:+90873793	MsG0180005366.01.T01:CDS
CCTCTTGTTCATGTCAACAT+CGG	0.651019	1:-90873844	None:intergenic
CCGATGTTGACATGAACAAG+AGG	0.658386	1:+90873844	MsG0180005366.01.T01:CDS
TCTGGAACCTTGAATTGACG+AGG	0.669518	1:-90874075	None:intergenic
CATAATATTATCCAACTCTG+CGG	0.698001	1:-90874037	None:intergenic
CACCAACTGTCTTTCCTCTG+CGG	0.707516	1:-90875072	None:intergenic
CGTGGATTGAGGCACTACTG+GGG	0.709284	1:+90875013	MsG0180005366.01.T01:CDS
TATGCTGACCACGAACACGA+AGG	0.739225	1:-90875036	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	GAAGTTAAAAAAAATTATAA+TGG	-	Chr1:90874871-90874890	None:intergenic	10.0%
!!!	ATTTTTGTTGTTAAAATTAA+TGG	+	Chr1:90873907-90873926	MsG0180005366.01.T01:intron	10.0%
!!!	TTTTTGTTGTTAAAATTAAT+GGG	+	Chr1:90873908-90873927	MsG0180005366.01.T01:intron	10.0%
!!	GTTTAAATAAATATCAATCT+AGG	+	Chr1:90874841-90874860	MsG0180005366.01.T01:intron	15.0%
!!	TTTGATATTATTGTTGAAAT+GGG	+	Chr1:90873971-90873990	MsG0180005366.01.T01:intron	15.0%
!!!	TTTTGATATTATTGTTGAAA+TGG	+	Chr1:90873970-90873989	MsG0180005366.01.T01:intron	15.0%
!!	TATTAATTCTATCATCTTTC+TGG	-	Chr1:90874281-90874300	None:intergenic	20.0%
!!!	AAATGACTGATTTATAAAAG+TGG	-	Chr1:90873891-90873910	None:intergenic	20.0%
!!!	AATGACTGATTTATAAAAGT+GGG	-	Chr1:90873890-90873909	None:intergenic	20.0%
!!!	TAATTTATTGCTTTGATAGT+TGG	+	Chr1:90874393-90874412	MsG0180005366.01.T01:intron	20.0%
!!!	TTCTGTTTTCAGTAATATAA+TGG	+	Chr1:90874896-90874915	MsG0180005366.01.T01:intron	20.0%
!!!	TTTGTTGTTGGATTTTTTTA+GGG	+	Chr1:90873999-90874018	MsG0180005366.01.T01:intron	20.0%
!!!	TTTTGTTGTTGGATTTTTTT+AGG	+	Chr1:90873998-90874017	MsG0180005366.01.T01:intron	20.0%
!	AAATAAATATCAATCTAGGC+AGG	+	Chr1:90874845-90874864	MsG0180005366.01.T01:intron	25.0%
!	ATGTTTGGAAATTGATTATC+AGG	+	Chr1:90874609-90874628	MsG0180005366.01.T01:intron	25.0%
!	ATTAAAACTGGTTAGAAAAG+TGG	-	Chr1:90874508-90874527	None:intergenic	25.0%
!	ATTTCTATGTTAAGAACCAA+CGG	-	Chr1:90875294-90875313	None:intergenic	25.0%
!	TATAAGATGAAAACAGTTGA+TGG	+	Chr1:90874759-90874778	MsG0180005366.01.T01:intron	25.0%
!	TCAATTTCCAAACATTATTG+TGG	-	Chr1:90874604-90874623	None:intergenic	25.0%
!	TTTCCCATAAGCTAAAATAT+AGG	+	Chr1:90874664-90874683	MsG0180005366.01.T01:intron	25.0%
!!	TCTTATTTGTTGAATGATGT+TGG	+	Chr1:90875259-90875278	MsG0180005366.01.T01:three_prime_UTR	25.0%
!!!	AATTATTGCTTTGATAGTGT+AGG	+	Chr1:90874300-90874319	MsG0180005366.01.T01:intron	25.0%
!!!	ACTTGTATTTGTTTTTCTCT+TGG	+	Chr1:90874721-90874740	MsG0180005366.01.T01:intron	25.0%
!!!	ATGTAGGAATATTTAAGTTG+AGG	+	Chr1:90874348-90874367	MsG0180005366.01.T01:intron	25.0%
!!!	GGTTACTAAATTTTTTGTTG+CGG	+	Chr1:90874947-90874966	MsG0180005366.01.T01:intron	25.0%
!!!	TAAGCTGTTATGTTTTGATT+TGG	+	Chr1:90875109-90875128	MsG0180005366.01.T01:exon	25.0%
	AAAATATAGGCAGTGAAAAC+TGG	+	Chr1:90874677-90874696	MsG0180005366.01.T01:intron	30.0%
	AAATATAGGCAGTGAAAACT+GGG	+	Chr1:90874678-90874697	MsG0180005366.01.T01:intron	30.0%
	ACGAAAAATAACAGAATCAG+TGG	-	Chr1:90873673-90873692	None:intergenic	30.0%
	AGTGAAGAAAGAGATGAAAT+CGG	-	Chr1:90873636-90873655	None:intergenic	30.0%
	ATGATTACTGCATAACAGAA+AGG	-	Chr1:90874993-90875012	None:intergenic	30.0%
	CATAATATTATCCAACTCTG+CGG	-	Chr1:90874040-90874059	None:intergenic	30.0%
	GTTGGATAATATTATGACAG+TGG	+	Chr1:90874044-90874063	MsG0180005366.01.T01:CDS	30.0%
	TAGCGCATTTCAATTAAAAC+TGG	-	Chr1:90874520-90874539	None:intergenic	30.0%
	TTAGCTTCCACAATAATGTT+TGG	+	Chr1:90874594-90874613	MsG0180005366.01.T01:intron	30.0%
	TTTCCTATACAGACTTTGTA+TGG	+	Chr1:90875178-90875197	MsG0180005366.01.T01:three_prime_UTR	30.0%
	TTTCTATGTTAAGAACCAAC+GGG	-	Chr1:90875293-90875312	None:intergenic	30.0%
	TTTCTGTTCAAAAACCAATC+TGG	-	Chr1:90874096-90874115	None:intergenic	30.0%
!	GTGACGATTTCAATTTTGTT+TGG	+	Chr1:90875213-90875232	MsG0180005366.01.T01:three_prime_UTR	30.0%
!	TTGCATAAGCAAACTGTTTT+GGG	-	Chr1:90874813-90874832	None:intergenic	30.0%
!	TTGGAGATTAGATGATTTTG+AGG	+	Chr1:90875128-90875147	MsG0180005366.01.T01:three_prime_UTR	30.0%
!	TTTGCATAAGCAAACTGTTT+TGG	-	Chr1:90874814-90874833	None:intergenic	30.0%
!!	ACATTTTAACACTGCTATGT+AGG	+	Chr1:90874332-90874351	MsG0180005366.01.T01:intron	30.0%
!!	AGTAATATAATGGATGTGTG+TGG	+	Chr1:90874906-90874925	MsG0180005366.01.T01:intron	30.0%
!!	TTGGTTTTTGAACAGAAAGA+AGG	+	Chr1:90874098-90874117	MsG0180005366.01.T01:CDS	30.0%
!!!	AAATGGGTTGTTTTTGTTGT+TGG	+	Chr1:90873987-90874006	MsG0180005366.01.T01:intron	30.0%
!!!	ACTGCCTATATTTTAGCTTA+TGG	-	Chr1:90874671-90874690	None:intergenic	30.0%
!!!	CTGCCTATATTTTAGCTTAT+GGG	-	Chr1:90874670-90874689	None:intergenic	30.0%
	AGAAAGAAGGATTACAAGGA+TGG	+	Chr1:90874111-90874130	MsG0180005366.01.T01:CDS	35.0%
	AGGGATAATACTAATGTCCA+TGG	+	Chr1:90874551-90874570	MsG0180005366.01.T01:intron	35.0%
	CAACCATACAAAGTCTGTAT+AGG	-	Chr1:90875184-90875203	None:intergenic	35.0%
	CATTAGTATTATCCCTCTTC+TGG	-	Chr1:90874547-90874566	None:intergenic	35.0%
	GAACAGAAAGAAGGATTACA+AGG	+	Chr1:90874107-90874126	MsG0180005366.01.T01:CDS	35.0%
	GATGATGTGATTGTTTGTGT+TGG	+	Chr1:90874255-90874274	MsG0180005366.01.T01:intron	35.0%
	GTGAAGAAAGAGATGAAATC+GGG	-	Chr1:90873635-90873654	None:intergenic	35.0%
	TCGTGATGTATTACAGTCTT+TGG	+	Chr1:90873689-90873708	MsG0180005366.01.T01:intron	35.0%
!	TGCATAAGCAAACTGTTTTG+GGG	-	Chr1:90874812-90874831	None:intergenic	35.0%
!!	TTGTTTTTCTCTTGGCTGTA+TGG	+	Chr1:90874729-90874748	MsG0180005366.01.T01:intron	35.0%
!!!	TTGTTGGATTTTTTTAGGGC+TGG	+	Chr1:90874003-90874022	MsG0180005366.01.T01:intron	35.0%
	AAAGTGGTGAATCATGACAG+CGG	-	Chr1:90874492-90874511	None:intergenic	40.0%
	ACAATGAAGTAGCAACTGAC+CGG	-	Chr1:90874209-90874228	None:intergenic	40.0%
	ATCAACTTGACATGAAGCTG+AGG	+	Chr1:90874157-90874176	MsG0180005366.01.T01:CDS	40.0%
	ATCGAGTTCATACACTGTCA+AGG	-	Chr1:90874437-90874456	None:intergenic	40.0%
	ATGGATGTGTGTGGAGAAAT+TGG	+	Chr1:90874915-90874934	MsG0180005366.01.T01:intron	40.0%
	CCTCTTGTTCATGTCAACAT+CGG	-	Chr1:90873847-90873866	None:intergenic	40.0%
	CTGTTATGCAGTAATCATCG+TGG	+	Chr1:90874995-90875014	MsG0180005366.01.T01:intron	40.0%
	GAAAGAGATGAAATCGGGAT+CGG	-	Chr1:90873630-90873649	None:intergenic	40.0%
	GTCAATTCAAGGTTCCAGAT+TGG	+	Chr1:90874079-90874098	MsG0180005366.01.T01:CDS	40.0%
	GTGTTGAACACAAATGTCGA+TGG	+	Chr1:90873744-90873763	MsG0180005366.01.T01:CDS	40.0%
	TCAACTTGACATGAAGCTGA+GGG	+	Chr1:90874158-90874177	MsG0180005366.01.T01:CDS	40.0%
	TGGATGTGTGTGGAGAAATT+GGG	+	Chr1:90874916-90874935	MsG0180005366.01.T01:intron	40.0%
	TTCGCAATGACCTCAATCAA+GGG	+	Chr1:90873783-90873802	MsG0180005366.01.T01:CDS	40.0%
!	ATGACCTCAATCAAGGGTAT+TGG	+	Chr1:90873789-90873808	MsG0180005366.01.T01:CDS	40.0%
!	ATGTTGGTGTTTATTCCCGT+TGG	+	Chr1:90875275-90875294	MsG0180005366.01.T01:three_prime_UTR	40.0%
!!	CAGCTTCATGTCAAGTTGAT+TGG	-	Chr1:90874157-90874176	None:intergenic	40.0%
	ACTGGGCTGAAGTTATTTGC+TGG	+	Chr1:90874695-90874714	MsG0180005366.01.T01:intron	45.0%
	CATGAAGCTGAGGGATGATT+TGG	+	Chr1:90874167-90874186	MsG0180005366.01.T01:CDS	45.0%
	CCGATGTTGACATGAACAAG+AGG	+	Chr1:90873844-90873863	MsG0180005366.01.T01:CDS	45.0%
	CCTTCCAATACCCTTGATTG+AGG	-	Chr1:90873796-90873815	None:intergenic	45.0%
	CGCTAACATCTGCTGTAAGA+AGG	+	Chr1:90873821-90873840	MsG0180005366.01.T01:CDS	45.0%
	GTTCGCAATGACCTCAATCA+AGG	+	Chr1:90873782-90873801	MsG0180005366.01.T01:CDS	45.0%
	TGCGAATCCTCGTCAATTCA+AGG	+	Chr1:90874068-90874087	MsG0180005366.01.T01:CDS	45.0%
	TGGAGAGACTCAAGAAGATC+CGG	+	Chr1:90874187-90874206	MsG0180005366.01.T01:CDS	45.0%
	TGTGTGGAGAAATTGGGCAT+TGG	+	Chr1:90874922-90874941	MsG0180005366.01.T01:intron	45.0%
	TTCTCTTGGCTGTATGGTAG+TGG	+	Chr1:90874735-90874754	MsG0180005366.01.T01:intron	45.0%
!	GCAGTAATCATCGTGGATTG+AGG	+	Chr1:90875002-90875021	MsG0180005366.01.T01:intron	45.0%
!	TCTGGAACCTTGAATTGACG+AGG	-	Chr1:90874078-90874097	None:intergenic	45.0%
!!	CATTTTAGACTAGCCGACCA+AGG	-	Chr1:90873599-90873618	None:intergenic	45.0%
!!	CCTCAATCAAGGGTATTGGA+AGG	+	Chr1:90873793-90873812	MsG0180005366.01.T01:CDS	45.0%
!!	CTTGGTCGGCTAGTCTAAAA+TGG	+	Chr1:90873597-90873616	MsG0180005366.01.T01:exon	45.0%
	AATGCGCTAGACACCAGAAG+AGG	+	Chr1:90874531-90874550	MsG0180005366.01.T01:intron	50.0%
	ATGCGCTAGACACCAGAAGA+GGG	+	Chr1:90874532-90874551	MsG0180005366.01.T01:intron	50.0%
	CACCAACTGTCTTTCCTCTG+CGG	-	Chr1:90875075-90875094	None:intergenic	50.0%
	CGACCAAGGTTCACTGTGAA+CGG	-	Chr1:90873585-90873604	None:intergenic	50.0%
	CGTTCACAGTGAACCTTGGT+CGG	+	Chr1:90873583-90873602	MsG0180005366.01.T01:five_prime_UTR	50.0%
	GGTCAGCATACCAAGACTAC+TGG	+	Chr1:90875049-90875068	MsG0180005366.01.T01:CDS	50.0%
	TATGCTGACCACGAACACGA+AGG	-	Chr1:90875039-90875058	None:intergenic	50.0%
	TCACCGTTCACAGTGAACCT+TGG	+	Chr1:90873579-90873598	MsG0180005366.01.T01:five_prime_UTR	50.0%
	TCCACGCACAATCAAAGCCA+TGG	-	Chr1:90874571-90874590	None:intergenic	50.0%
!	ATCGTGGATTGAGGCACTAC+TGG	+	Chr1:90875011-90875030	MsG0180005366.01.T01:CDS	50.0%
!	TCGTGGATTGAGGCACTACT+GGG	+	Chr1:90875012-90875031	MsG0180005366.01.T01:CDS	50.0%
!	TGAATTGAGTGCCGCAGAGT+TGG	+	Chr1:90874026-90874045	MsG0180005366.01.T01:CDS	50.0%
!!	TCCATGGCTTTGATTGTGCG+TGG	+	Chr1:90874567-90874586	MsG0180005366.01.T01:intron	50.0%
!!	TGGAGAAATTGGGCATTGGC+TGG	+	Chr1:90874926-90874945	MsG0180005366.01.T01:intron	50.0%
	GTGGTGAATCATGACAGCGG+AGG	-	Chr1:90874489-90874508	None:intergenic	55.0%
!	ATCATGACAGCGGAGGTGCA+TGG	-	Chr1:90874482-90874501	None:intergenic	55.0%
!	CGTGGATTGAGGCACTACTG+GGG	+	Chr1:90875013-90875032	MsG0180005366.01.T01:CDS	55.0%
	AACGGTGATGACTGCCGCCA+AGG	-	Chr1:90873567-90873586	None:intergenic	60.0%
	ACCAAGACTACTGGCCGCAG+AGG	+	Chr1:90875058-90875077	MsG0180005366.01.T01:CDS	60.0%
	ACGGTGATGACTGCCGCCAA+GGG	-	Chr1:90873566-90873585	None:intergenic	60.0%
	AGCGACACACACACCCTTGG+CGG	+	Chr1:90873550-90873569	MsG0180005366.01.T01:five_prime_UTR	60.0%
	CACAGCGACACACACACCCT+TGG	+	Chr1:90873547-90873566	MsG0180005366.01.T01:five_prime_UTR	60.0%
	GGCCGCAGAGGAAAGACAGT+TGG	+	Chr1:90875070-90875089	MsG0180005366.01.T01:CDS	60.0%
	TACTGGGGCCTTCGTGTTCG+TGG	+	Chr1:90875028-90875047	MsG0180005366.01.T01:CDS	60.0%
	TCCTCTGCGGCCAGTAGTCT+TGG	-	Chr1:90875062-90875081	None:intergenic	60.0%

Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	90873534	90875318	90873534	ID=MsG0180005366.01;Name=MsG0180005366.01
Chr1	mRNA	90873534	90875318	90873534	ID=MsG0180005366.01.T01;Parent=MsG0180005366.01;Name=MsG0180005366.01.T01;_AED=0.49;_eAED=0.49;_QI=82\|1\|1\|1\|1\|1\|4\|207\|152
Chr1	exon	90873534	90873618	90873534	ID=MsG0180005366.01.T01:exon:14714;Parent=MsG0180005366.01.T01
Chr1	exon	90873705	90873865	90873705	ID=MsG0180005366.01.T01:exon:14715;Parent=MsG0180005366.01.T01
Chr1	exon	90874020	90874208	90874020	ID=MsG0180005366.01.T01:exon:14716;Parent=MsG0180005366.01.T01
Chr1	exon	90875006	90875318	90875006	ID=MsG0180005366.01.T01:exon:14717;Parent=MsG0180005366.01.T01
Chr1	five_prime_UTR	90873534	90873615	90873534	ID=MsG0180005366.01.T01:five_prime_utr;Parent=MsG0180005366.01.T01
Chr1	CDS	90873616	90873618	90873616	ID=MsG0180005366.01.T01:cds;Parent=MsG0180005366.01.T01
Chr1	CDS	90873705	90873865	90873705	ID=MsG0180005366.01.T01:cds;Parent=MsG0180005366.01.T01
Chr1	CDS	90874020	90874208	90874020	ID=MsG0180005366.01.T01:cds;Parent=MsG0180005366.01.T01
Chr1	CDS	90875006	90875111	90875006	ID=MsG0180005366.01.T01:cds;Parent=MsG0180005366.01.T01
Chr1	three_prime_UTR	90875112	90875318	90875112	ID=MsG0180005366.01.T01:three_prime_utr;Parent=MsG0180005366.01.T01

Gene Sequence

>MsG0180005366.01.T01

ATGTCTTTGGTTGCGAACGAAGAATTTCAGCACATTTTGCGTGTGTTGAACACAAATGTCGATGGAAAGCAGAAGATTCAGTTCGCAATGACCTCAATCAAGGGTATTGGAAGGAGATTCGCTAACATCTGCTGTAAGAAGGCCGATGTTGACATGAACAAGAGGGCTGGTGAATTGAGTGCCGCAGAGTTGGATAATATTATGACAGTGGTTGCGAATCCTCGTCAATTCAAGGTTCCAGATTGGTTTTTGAACAGAAAGAAGGATTACAAGGATGGCAAATTCTCTCAAGTTGTATCCAATCAACTTGACATGAAGCTGAGGGATGATTTGGAGAGACTCAAGAAGATCCGTAATCATCGTGGATTGAGGCACTACTGGGGCCTTCGTGTTCGTGGTCAGCATACCAAGACTACTGGCCGCAGAGGAAAGACAGTTGGTGTGTCAAAGAAGCGTTAA

Protein sequence

>MsG0180005366.01.T01

MSLVANEEFQHILRVLNTNVDGKQKIQFAMTSIKGIGRRFANICCKKADVDMNKRAGELSAAELDNIMTVVANPRQFKVPDWFLNRKKDYKDGKFSQVVSNQLDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR*