Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780036822.01.T01 | KAG6761860.1 | 69.466 | 131 | 20 | 1 | 1 | 111 | 1 | 131 | 1.53E-49 | 165 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780036822.01.T01 | O49884 | 98.551 | 69 | 1 | 0 | 1 | 69 | 1 | 69 | 5.60E-42 | 137 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780036822.01.T01 | A0A072U7S2 | 98.551 | 69 | 1 | 0 | 1 | 69 | 1 | 69 | 5.43e-40 | 138 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048687.01 | MsG0780036822.01 | 0.821296 | 4.354771e-53 | 3.528787e-50 |
| MsG0080048971.01 | MsG0780036822.01 | 0.895910 | 6.116363e-76 | 6.467278e-72 |
| MsG0180000339.01 | MsG0780036822.01 | 0.812090 | 5.049054e-51 | 3.180227e-48 |
| MsG0180000575.01 | MsG0780036822.01 | 0.811711 | 6.106235e-51 | 3.806978e-48 |
| MsG0180000614.01 | MsG0780036822.01 | 0.816784 | 4.625197e-52 | 3.308591e-49 |
| MsG0180000615.01 | MsG0780036822.01 | 0.813351 | 2.674765e-51 | 1.742635e-48 |
| MsG0180001102.01 | MsG0780036822.01 | 0.814151 | 1.783040e-51 | 1.187116e-48 |
| MsG0180003115.01 | MsG0780036822.01 | 0.816876 | 4.410631e-52 | 3.163161e-49 |
| MsG0180003117.01 | MsG0780036822.01 | 0.800857 | 1.183671e-48 | 5.570615e-46 |
| MsG0180003313.01 | MsG0780036822.01 | 0.859453 | 4.092187e-63 | 1.081347e-59 |
| MsG0180003612.01 | MsG0780036822.01 | 0.873087 | 1.928996e-67 | 8.265085e-64 |
| MsG0180003793.01 | MsG0780036822.01 | 0.868519 | 6.147892e-66 | 2.230545e-62 |
| MsG0180004009.01 | MsG0780036822.01 | 0.817156 | 3.816344e-52 | 2.757903e-49 |
| MsG0180004129.01 | MsG0780036822.01 | 0.839368 | 1.652655e-57 | 2.277385e-54 |
| MsG0180004130.01 | MsG0780036822.01 | 0.830609 | 2.666492e-55 | 2.823504e-52 |
| MsG0180004607.01 | MsG0780036822.01 | 0.808466 | 3.055407e-50 | 1.748312e-47 |
| MsG0180004609.01 | MsG0780036822.01 | 0.852025 | 6.049863e-61 | 1.247558e-57 |
| MsG0180004622.01 | MsG0780036822.01 | 0.819168 | 1.337807e-52 | 1.021766e-49 |
| MsG0180004625.01 | MsG0780036822.01 | 0.836058 | 1.168984e-56 | 1.456418e-53 |
| MsG0180004854.01 | MsG0780036822.01 | 0.842568 | 2.388599e-58 | 3.636458e-55 |
| MsG0180005361.01 | MsG0780036822.01 | 0.836046 | 1.176754e-56 | 1.465610e-53 |
| MsG0180005366.01 | MsG0780036822.01 | 0.893602 | 5.393184e-75 | 5.173246e-71 |
| MsG0180005426.01 | MsG0780036822.01 | 0.868549 | 6.011244e-66 | 2.183321e-62 |
| MsG0180005659.01 | MsG0780036822.01 | 0.811029 | 8.589585e-51 | 5.260165e-48 |
| MsG0280006424.01 | MsG0780036822.01 | 0.844079 | 9.437996e-59 | 1.506683e-55 |
| MsG0280010801.01 | MsG0780036822.01 | 0.847358 | 1.216728e-59 | 2.157002e-56 |
| MsG0280010995.01 | MsG0780036822.01 | 0.858945 | 5.814606e-63 | 1.509749e-59 |
| MsG0280011234.01 | MsG0780036822.01 | 0.834453 | 2.970997e-56 | 3.527506e-53 |
| MsG0280011308.01 | MsG0780036822.01 | 0.809186 | 2.142938e-50 | 1.249789e-47 |
| MsG0380012073.01 | MsG0780036822.01 | 0.866103 | 3.640242e-65 | 1.212482e-61 |
| MsG0680031628.01 | MsG0780036822.01 | 0.806223 | 9.130325e-50 | 4.928816e-47 |
| MsG0680031763.01 | MsG0780036822.01 | 0.835468 | 1.648639e-56 | 2.017823e-53 |
| MsG0680032770.01 | MsG0780036822.01 | 0.882733 | 8.130210e-71 | 5.009962e-67 |
| MsG0480018477.01 | MsG0780036822.01 | 0.847893 | 8.668507e-60 | 1.563220e-56 |
| MsG0480020895.01 | MsG0780036822.01 | 0.814537 | 1.464555e-51 | 9.853549e-49 |
| MsG0480021006.01 | MsG0780036822.01 | 0.812815 | 3.505445e-51 | 2.250887e-48 |
| MsG0480021159.01 | MsG0780036822.01 | 0.851891 | 6.603140e-61 | 1.355819e-57 |
| MsG0480022693.01 | MsG0780036822.01 | 0.806314 | 8.734373e-50 | 4.725807e-47 |
| MsG0480023149.01 | MsG0780036822.01 | 0.886726 | 2.661855e-72 | 1.923533e-68 |
| MsG0480023399.01 | MsG0780036822.01 | 0.818147 | 2.281219e-52 | 1.693884e-49 |
| MsG0480023467.01 | MsG0780036822.01 | 0.914140 | 2.716609e-84 | 6.651392e-80 |
| MsG0580024369.01 | MsG0780036822.01 | 0.873612 | 1.284575e-67 | 5.609121e-64 |
| MsG0580025348.01 | MsG0780036822.01 | 0.809963 | 1.459128e-50 | 8.686951e-48 |
| MsG0380015494.01 | MsG0780036822.01 | 0.802617 | 5.153951e-49 | 2.536192e-46 |
| MsG0380016389.01 | MsG0780036822.01 | 0.805651 | 1.204553e-49 | 6.407672e-47 |
| MsG0380016577.01 | MsG0780036822.01 | 0.826152 | 3.173018e-54 | 2.951554e-51 |
| MsG0380016733.01 | MsG0780036822.01 | 0.839245 | 1.777804e-57 | 2.440567e-54 |
| MsG0380017382.01 | MsG0780036822.01 | 0.837834 | 4.114681e-57 | 5.410754e-54 |
| MsG0480018084.01 | MsG0780036822.01 | 0.849394 | 3.325897e-60 | 6.295941e-57 |
| MsG0480018252.01 | MsG0780036822.01 | 0.803418 | 3.519549e-49 | 1.767752e-46 |
| MsG0580027043.01 | MsG0780036822.01 | 0.871619 | 5.955423e-67 | 2.418179e-63 |
| MsG0580029132.01 | MsG0780036822.01 | 0.890798 | 7.114441e-74 | 6.074214e-70 |
| MsG0280006664.01 | MsG0780036822.01 | 0.816411 | 5.606090e-52 | 3.969398e-49 |
| MsG0280006741.01 | MsG0780036822.01 | 0.802686 | 4.987117e-49 | 2.458391e-46 |
| MsG0280006819.01 | MsG0780036822.01 | 0.862144 | 6.240701e-64 | 1.808856e-60 |
| MsG0280006836.01 | MsG0780036822.01 | 0.879522 | 1.163859e-69 | 6.328671e-66 |
| MsG0280006993.01 | MsG0780036822.01 | 0.851483 | 8.616465e-61 | 1.746433e-57 |
| MsG0280008118.01 | MsG0780036822.01 | 0.852063 | 5.903565e-61 | 1.218913e-57 |
| MsG0280008283.01 | MsG0780036822.01 | 0.811774 | 5.915834e-51 | 3.694597e-48 |
| MsG0280009372.01 | MsG0780036822.01 | 0.868058 | 8.655581e-66 | 3.088736e-62 |
| MsG0280009375.01 | MsG0780036822.01 | 0.866780 | 2.220240e-65 | 7.574359e-62 |
| MsG0280010383.01 | MsG0780036822.01 | 0.844330 | 8.083333e-59 | 1.300564e-55 |
| MsG0280010495.01 | MsG0780036822.01 | 0.902529 | 8.829337e-79 | 1.255843e-74 |
| MsG0280010525.01 | MsG0780036822.01 | 0.853122 | 2.943622e-61 | 6.292644e-58 |
| MsG0680035848.01 | MsG0780036822.01 | 0.845312 | 4.392305e-59 | 7.290259e-56 |
| MsG0780036240.01 | MsG0780036822.01 | 0.821783 | 3.360225e-53 | 2.760545e-50 |
| MsG0780036547.01 | MsG0780036822.01 | 0.853224 | 2.751710e-61 | 5.903645e-58 |
| MsG0780036822.01 | MsG0780038400.01 | 0.851538 | 8.316581e-61 | 1.688717e-57 |
| MsG0780036822.01 | MsG0780038587.01 | 0.860829 | 1.572380e-63 | 4.356168e-60 |
| MsG0780036822.01 | MsG0780040338.01 | 0.841131 | 5.723387e-58 | 8.329032e-55 |
| MsG0780036822.01 | MsG0780040782.01 | 0.880076 | 7.393328e-70 | 4.108981e-66 |
| MsG0780036822.01 | MsG0780040900.01 | 0.867120 | 1.729775e-65 | 5.970499e-62 |
| MsG0780036822.01 | MsG0780041058.01 | 0.812416 | 4.285653e-51 | 2.723474e-48 |
| MsG0780036822.01 | MsG0780041147.01 | 0.889213 | 2.961681e-73 | 2.367463e-69 |
| MsG0780036822.01 | MsG0780041223.01 | 0.850635 | 1.495147e-60 | 2.947611e-57 |
| MsG0780036822.01 | MsG0780041224.01 | 0.832800 | 7.689174e-56 | 8.687182e-53 |
| MsG0780036822.01 | MsG0780041332.01 | 0.853529 | 2.250152e-61 | 4.876830e-58 |
| MsG0780036822.01 | MsG0780041461.01 | 0.831174 | 1.938890e-55 | 2.087524e-52 |
| MsG0780036822.01 | MsG0780041519.01 | 0.836946 | 6.946301e-57 | 8.888776e-54 |
| MsG0780036822.01 | MsG0880041967.01 | 0.851573 | 8.127604e-61 | 1.652190e-57 |
| MsG0780036822.01 | MsG0880042125.01 | 0.890991 | 5.965684e-74 | 5.134691e-70 |
| MsG0780036822.01 | MsG0880043517.01 | 0.847291 | 1.269160e-59 | 2.245001e-56 |
| MsG0780036822.01 | MsG0880043770.01 | 0.808818 | 2.568840e-50 | 1.483444e-47 |
| MsG0780036822.01 | MsG0880044711.01 | 0.827850 | 1.245816e-54 | 1.217235e-51 |
| MsG0780036822.01 | MsG0880046177.01 | 0.827214 | 1.770433e-54 | 1.698080e-51 |
| MsG0780036822.01 | MsG0880046444.01 | 0.896120 | 5.002818e-76 | 5.338587e-72 |
| MsG0780036822.01 | MsG0880046575.01 | 0.807535 | 4.821009e-50 | 2.691984e-47 |
| MsG0780036822.01 | MsG0880046879.01 | 0.892776 | 1.161652e-74 | 1.076797e-70 |
| MsG0780036822.01 | MsG0880047082.01 | 0.835684 | 1.454240e-56 | 1.791546e-53 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780036822.01.T01 | MTR_7g021030 | 98.551 | 69 | 1 | 0 | 1 | 69 | 1 | 69 | 1.38e-43 | 138 |
| MsG0780036822.01.T01 | MTR_7g021030 | 98.551 | 69 | 1 | 0 | 1 | 69 | 1 | 69 | 4.94e-43 | 137 |
| MsG0780036822.01.T01 | MTR_0024s0220 | 95.652 | 69 | 3 | 0 | 1 | 69 | 1 | 69 | 3.78e-42 | 135 |
| MsG0780036822.01.T01 | MTR_0024s0220 | 95.652 | 69 | 3 | 0 | 1 | 69 | 1 | 69 | 5.06e-42 | 135 |
| MsG0780036822.01.T01 | MTR_5g088740 | 94.203 | 69 | 4 | 0 | 1 | 69 | 1 | 69 | 6.57e-41 | 132 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780036822.01.T01 | AT1G36240 | 86.957 | 69 | 9 | 0 | 1 | 69 | 1 | 69 | 2.03e-38 | 126 |
| MsG0780036822.01.T01 | AT3G18740 | 84.058 | 69 | 11 | 0 | 1 | 69 | 1 | 69 | 7.63e-37 | 122 |
| MsG0780036822.01.T01 | AT1G77940 | 82.609 | 69 | 12 | 0 | 1 | 69 | 1 | 69 | 3.26e-36 | 120 |
Find 38 sgRNAs with CRISPR-Local
Find 99 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAACTAAATTGATACTATT+GGG | 0.264694 | 7:-14455860 | None:intergenic |
| GTTCAGTGGATTAATGAGTA+TGG | 0.286367 | 7:+14455878 | MsG0780036822.01.T01:three_prime_UTR |
| CTGAACTAAATTGATACTAT+TGG | 0.303827 | 7:-14455861 | None:intergenic |
| ATGGTGTACGATGCGTATTT+TGG | 0.316239 | 7:+14455685 | MsG0780036822.01.T01:three_prime_UTR |
| CTATGCTATGTTGGCTAAGT+TGG | 0.356019 | 7:+14454481 | MsG0780036822.01.T01:CDS |
| CTAACAACTGTCCTCCTTTG+AGG | 0.365472 | 7:+14454441 | MsG0780036822.01.T01:CDS |
| GACATCATCAAGACAATTCC+TGG | 0.382525 | 7:+14455573 | MsG0780036822.01.T01:CDS |
| AAAATTCTAGTTGTAGACTA+TGG | 0.397229 | 7:+14455666 | MsG0780036822.01.T01:exon |
| ACAACTTACTTCCATTGTAA+TGG | 0.400094 | 7:-14454510 | None:intergenic |
| GGCCACCATTGTTGAATGTT+TGG | 0.411363 | 7:-14453897 | None:intergenic |
| TACTGCGTTTACTGATCTCC+AGG | 0.439400 | 7:-14455591 | None:intergenic |
| CTCATGAGAGCATCAACAAC+AGG | 0.462326 | 7:+14454038 | MsG0780036822.01.T01:CDS |
| TGCCTCAGCATTGTTGATCC+TGG | 0.466033 | 7:+14455459 | MsG0780036822.01.T01:CDS |
| GAAGCTTACGGTCTTCTTTG+CGG | 0.470686 | 7:-14453918 | None:intergenic |
| TTACTCAATGCTCAATCAGC+GGG | 0.500250 | 7:-14455712 | None:intergenic |
| AAGAGTGGAAAATATACCCT+TGG | 0.505811 | 7:+14454076 | MsG0780036822.01.T01:CDS |
| AAATCCCTCAGGAGTTCTAA+AGG | 0.506686 | 7:+14454115 | MsG0780036822.01.T01:CDS |
| ATAGTATCAATTTAGTTCAG+TGG | 0.510268 | 7:+14455864 | MsG0780036822.01.T01:three_prime_UTR |
| ACATAGAATTGAAAACATCA+TGG | 0.511457 | 7:-14455623 | None:intergenic |
| CTTGCTCTTGTTATGAAGAG+TGG | 0.524886 | 7:+14454061 | MsG0780036822.01.T01:CDS |
| GAACTAAATTGATACTATTG+GGG | 0.534174 | 7:-14455859 | None:intergenic |
| ATTACCTTTAGAACTCCTGA+GGG | 0.545765 | 7:-14454119 | None:intergenic |
| AATTGAGTACTATGCTATGT+TGG | 0.552970 | 7:+14454472 | MsG0780036822.01.T01:CDS |
| AGAGTGGAAAATATACCCTT+GGG | 0.553555 | 7:+14454077 | MsG0780036822.01.T01:CDS |
| AAACTGTTCTCAAATCCCTC+AGG | 0.565600 | 7:+14454104 | MsG0780036822.01.T01:CDS |
| GTTGACCTTGGCACTGCTTG+CGG | 0.567329 | 7:+14455417 | MsG0780036822.01.T01:CDS |
| ATCATAGACAATGTTGACCT+TGG | 0.573586 | 7:+14455405 | MsG0780036822.01.T01:intron |
| CATAGAATTGAAAACATCAT+GGG | 0.585069 | 7:-14455622 | None:intergenic |
| ATTTCAGACTTCCTCAAAGG+AGG | 0.587118 | 7:-14454452 | None:intergenic |
| TCAATTTCAGACTTCCTCAA+AGG | 0.597003 | 7:-14454455 | None:intergenic |
| GTTGGAGTTCACCATTACAA+TGG | 0.600433 | 7:+14454499 | MsG0780036822.01.T01:CDS |
| AATTACCTTTAGAACTCCTG+AGG | 0.601529 | 7:-14454120 | None:intergenic |
| AGGAATTGTCTTGATGATGT+CGG | 0.611366 | 7:-14455571 | None:intergenic |
| ACTTTCCGCAAGCAGTGCCA+AGG | 0.618915 | 7:-14455422 | None:intergenic |
| CACCAAACATTCAACAATGG+TGG | 0.629371 | 7:+14453895 | MsG0780036822.01.T01:exon |
| ATTACTCAATGCTCAATCAG+CGG | 0.635785 | 7:-14455713 | None:intergenic |
| TACCAGGATCAACAATGCTG+AGG | 0.662178 | 7:-14455461 | None:intergenic |
| TCACACCAAACATTCAACAA+TGG | 0.690217 | 7:+14453892 | MsG0780036822.01.T01:exon |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAAATAACAAATAAAATTAG+AGG | - | Chr7:14455535-14455554 | None:intergenic | 15.0% |
| !!! | CTCTAATTTTATTTGTTATT+TGG | + | Chr7:14455533-14455552 | MsG0780036822.01.T01:intron | 15.0% |
| !! | TATAATTATCTATCAGTAGT+TGG | + | Chr7:14455093-14455112 | MsG0780036822.01.T01:intron | 20.0% |
| !! | TGAACTAAATTGATACTATT+GGG | - | Chr7:14455863-14455882 | None:intergenic | 20.0% |
| !! | TGACTTAACTTTATAAGATT+TGG | + | Chr7:14454991-14455010 | MsG0780036822.01.T01:intron | 20.0% |
| !!! | AAGCTAGTTATACTTTAAAA+TGG | + | Chr7:14454733-14454752 | MsG0780036822.01.T01:intron | 20.0% |
| !!! | TTGATTGAATTAAGTGATTT+TGG | + | Chr7:14454342-14454361 | MsG0780036822.01.T01:intron | 20.0% |
| !!! | TTGTGTTGATTAATGATATA+GGG | - | Chr7:14454789-14454808 | None:intergenic | 20.0% |
| !!! | TTTGATTTGATTATTCTGTA+GGG | + | Chr7:14454402-14454421 | MsG0780036822.01.T01:intron | 20.0% |
| !!! | TTTGTGTTGATTAATGATAT+AGG | - | Chr7:14454790-14454809 | None:intergenic | 20.0% |
| !!! | TTTTGATTTGATTATTCTGT+AGG | + | Chr7:14454401-14454420 | MsG0780036822.01.T01:intron | 20.0% |
| ! | AAATAAGTGATTAGTGAAAG+TGG | + | Chr7:14454296-14454315 | MsG0780036822.01.T01:intron | 25.0% |
| ! | AATTGTGTATGTATACCTTA+GGG | + | Chr7:14454828-14454847 | MsG0780036822.01.T01:intron | 25.0% |
| ! | ACATAGAATTGAAAACATCA+TGG | - | Chr7:14455626-14455645 | None:intergenic | 25.0% |
| ! | ATGATTTCGTTTCAGATTTA+GGG | + | Chr7:14453969-14453988 | MsG0780036822.01.T01:intron | 25.0% |
| ! | CATAGAATTGAAAACATCAT+GGG | - | Chr7:14455625-14455644 | None:intergenic | 25.0% |
| ! | CTGAACTAAATTGATACTAT+TGG | - | Chr7:14455864-14455883 | None:intergenic | 25.0% |
| ! | GAACTAAATTGATACTATTG+GGG | - | Chr7:14455862-14455881 | None:intergenic | 25.0% |
| ! | GTACTGAAAAATATTATACG+TGG | + | Chr7:14454937-14454956 | MsG0780036822.01.T01:intron | 25.0% |
| ! | TAAGAAGAATTCCAACAATT+TGG | - | Chr7:14455289-14455308 | None:intergenic | 25.0% |
| ! | TAATTGTGTATGTATACCTT+AGG | + | Chr7:14454827-14454846 | MsG0780036822.01.T01:intron | 25.0% |
| ! | TACACATTTCAACAACAAAA+TGG | - | Chr7:14454153-14454172 | None:intergenic | 25.0% |
| ! | TATGATTTCGTTTCAGATTT+AGG | + | Chr7:14453968-14453987 | MsG0780036822.01.T01:intron | 25.0% |
| ! | TCATGTTGAAGAATTATACA+TGG | + | Chr7:14454887-14454906 | MsG0780036822.01.T01:intron | 25.0% |
| ! | TTAGATTAGATTAGATTGCA+AGG | + | Chr7:14454211-14454230 | MsG0780036822.01.T01:intron | 25.0% |
| !! | AAAATTCTAGTTGTAGACTA+TGG | + | Chr7:14455666-14455685 | MsG0780036822.01.T01:exon | 25.0% |
| !! | ATACATAACAGAAGCATATT+TGG | - | Chr7:14455151-14455170 | None:intergenic | 25.0% |
| !! | ATAGTATCAATTTAGTTCAG+TGG | + | Chr7:14455864-14455883 | MsG0780036822.01.T01:three_prime_UTR | 25.0% |
| !! | CTACAACTAGAATTTTCTTT+CGG | - | Chr7:14455662-14455681 | None:intergenic | 25.0% |
| !! | TTGTTGTTGAAATGTGTATT+GGG | + | Chr7:14454155-14454174 | MsG0780036822.01.T01:intron | 25.0% |
| !!! | ATAATATTTTTCAGTACGAC+AGG | - | Chr7:14454934-14454953 | None:intergenic | 25.0% |
| !!! | ATTTGTTATTTGGTGTTTTC+AGG | + | Chr7:14455543-14455562 | MsG0780036822.01.T01:intron | 25.0% |
| !!! | TAATATTTTTCAGTACGACA+GGG | - | Chr7:14454933-14454952 | None:intergenic | 25.0% |
| !!! | TTTGTTGTTGAAATGTGTAT+TGG | + | Chr7:14454154-14454173 | MsG0780036822.01.T01:intron | 25.0% |
| AATTGAGTACTATGCTATGT+TGG | + | Chr7:14454472-14454491 | MsG0780036822.01.T01:CDS | 30.0% | |
| ACAACTTACTTCCATTGTAA+TGG | - | Chr7:14454513-14454532 | None:intergenic | 30.0% | |
| TAGAATGATATGAAATGCAG+TGG | + | Chr7:14454694-14454713 | MsG0780036822.01.T01:intron | 30.0% | |
| TTAATGACACAGAGAAGTAA+AGG | - | Chr7:14454547-14454566 | None:intergenic | 30.0% | |
| TTCAATGTTGATATGCATCA+GGG | + | Chr7:14454570-14454589 | MsG0780036822.01.T01:intron | 30.0% | |
| TTTCAATGTTGATATGCATC+AGG | + | Chr7:14454569-14454588 | MsG0780036822.01.T01:intron | 30.0% | |
| ! | TGTTGATTAATGATATAGGG+TGG | - | Chr7:14454786-14454805 | None:intergenic | 30.0% |
| !! | GTTGTAGATTGATTTTGTAG+TGG | + | Chr7:14454273-14454292 | MsG0780036822.01.T01:intron | 30.0% |
| !! | TGAAATGCAGTGGATTAAAA+TGG | + | Chr7:14454704-14454723 | MsG0780036822.01.T01:intron | 30.0% |
| !! | TTGTTGTTTCTCCAAATTGT+TGG | + | Chr7:14455275-14455294 | MsG0780036822.01.T01:intron | 30.0% |
| !! | TTTGAATGTTGATTTGGTAG+TGG | + | Chr7:14454368-14454387 | MsG0780036822.01.T01:intron | 30.0% |
| !!! | TGGAGTTTTGAATGTTGATT+TGG | + | Chr7:14454362-14454381 | MsG0780036822.01.T01:intron | 30.0% |
| AAGAGTGGAAAATATACCCT+TGG | + | Chr7:14454076-14454095 | MsG0780036822.01.T01:CDS | 35.0% | |
| AATTATTACACGTGACCCTA+AGG | - | Chr7:14454846-14454865 | None:intergenic | 35.0% | |
| AGAGTGGAAAATATACCCTT+GGG | + | Chr7:14454077-14454096 | MsG0780036822.01.T01:CDS | 35.0% | |
| ATCATAGACAATGTTGACCT+TGG | + | Chr7:14455405-14455424 | MsG0780036822.01.T01:intron | 35.0% | |
| ATTACTCAATGCTCAATCAG+CGG | - | Chr7:14455716-14455735 | None:intergenic | 35.0% | |
| ATTTGATCTTACGCTGATGT+GGG | + | Chr7:14455029-14455048 | MsG0780036822.01.T01:intron | 35.0% | |
| TATCTATCAGTAGTTGGATG+TGG | + | Chr7:14455099-14455118 | MsG0780036822.01.T01:intron | 35.0% | |
| TCAATTTCAGACTTCCTCAA+AGG | - | Chr7:14454458-14454477 | None:intergenic | 35.0% | |
| TCACACCAAACATTCAACAA+TGG | + | Chr7:14453892-14453911 | MsG0780036822.01.T01:exon | 35.0% | |
| TGAAGAAAGCAACATATACC+AGG | - | Chr7:14455480-14455499 | None:intergenic | 35.0% | |
| TGCTGAATGAAAGAAGCTTA+CGG | - | Chr7:14453933-14453952 | None:intergenic | 35.0% | |
| ! | ATGGCTTAGTTTGATGATTG+TGG | + | Chr7:14455202-14455221 | MsG0780036822.01.T01:intron | 35.0% |
| ! | TACTGCATATGCTAGTTTGA+TGG | + | Chr7:14455183-14455202 | MsG0780036822.01.T01:intron | 35.0% |
| ! | TCTGTTATCAGTTGACTCTA+AGG | + | Chr7:14455329-14455348 | MsG0780036822.01.T01:intron | 35.0% |
| !! | AATTACCTTTAGAACTCCTG+AGG | - | Chr7:14454123-14454142 | None:intergenic | 35.0% |
| !! | AGGAATTGTCTTGATGATGT+CGG | - | Chr7:14455574-14455593 | None:intergenic | 35.0% |
| !! | ATTACCTTTAGAACTCCTGA+GGG | - | Chr7:14454122-14454141 | None:intergenic | 35.0% |
| !! | GAGAACAGTTTTATACCCAA+GGG | - | Chr7:14454095-14454114 | None:intergenic | 35.0% |
| !! | GTTCAGTGGATTAATGAGTA+TGG | + | Chr7:14455878-14455897 | MsG0780036822.01.T01:three_prime_UTR | 35.0% |
| !! | TGAGAACAGTTTTATACCCA+AGG | - | Chr7:14454096-14454115 | None:intergenic | 35.0% |
| AAACTGTTCTCAAATCCCTC+AGG | + | Chr7:14454104-14454123 | MsG0780036822.01.T01:CDS | 40.0% | |
| ATGACACTACTGTACGATAC+AGG | - | Chr7:14454971-14454990 | None:intergenic | 40.0% | |
| ATGCGCAGAGAAGAAAAATG+CGG | - | Chr7:14453871-14453890 | None:intergenic | 40.0% | |
| ATTTCAGACTTCCTCAAAGG+AGG | - | Chr7:14454455-14454474 | None:intergenic | 40.0% | |
| CACCAAACATTCAACAATGG+TGG | + | Chr7:14453895-14453914 | MsG0780036822.01.T01:exon | 40.0% | |
| CACTGATACACACTAAAGCT+CGG | - | Chr7:14454671-14454690 | None:intergenic | 40.0% | |
| GACATCATCAAGACAATTCC+TGG | + | Chr7:14455573-14455592 | MsG0780036822.01.T01:CDS | 40.0% | |
| GATTTGATCTTACGCTGATG+TGG | + | Chr7:14455028-14455047 | MsG0780036822.01.T01:intron | 40.0% | |
| GTTGGAGTTCACCATTACAA+TGG | + | Chr7:14454499-14454518 | MsG0780036822.01.T01:CDS | 40.0% | |
| TATGCATCAGGGATTGTTTC+AGG | + | Chr7:14454581-14454600 | MsG0780036822.01.T01:intron | 40.0% | |
| TCGGCTAGATAGAATCAATC+AGG | - | Chr7:14454652-14454671 | None:intergenic | 40.0% | |
| TGACACTACTGTACGATACA+GGG | - | Chr7:14454970-14454989 | None:intergenic | 40.0% | |
| TGATATAGGGTGGAATAGAG+TGG | - | Chr7:14454776-14454795 | None:intergenic | 40.0% | |
| TTACTCAATGCTCAATCAGC+GGG | - | Chr7:14455715-14455734 | None:intergenic | 40.0% | |
| ! | AAATCCCTCAGGAGTTCTAA+AGG | + | Chr7:14454115-14454134 | MsG0780036822.01.T01:CDS | 40.0% |
| ! | ATGGTGTACGATGCGTATTT+TGG | + | Chr7:14455685-14455704 | MsG0780036822.01.T01:three_prime_UTR | 40.0% |
| ! | CTATGCTATGTTGGCTAAGT+TGG | + | Chr7:14454481-14454500 | MsG0780036822.01.T01:CDS | 40.0% |
| ! | CTTGCTCTTGTTATGAAGAG+TGG | + | Chr7:14454061-14454080 | MsG0780036822.01.T01:CDS | 40.0% |
| ! | GATTGTGGATATGCTTTTGC+TGG | + | Chr7:14455217-14455236 | MsG0780036822.01.T01:intron | 40.0% |
| ! | GTTGCTTTCTTCAACTGTCT+TGG | + | Chr7:14455487-14455506 | MsG0780036822.01.T01:intron | 40.0% |
| ! | TGGTGTACGATGCGTATTTT+GGG | + | Chr7:14455686-14455705 | MsG0780036822.01.T01:three_prime_UTR | 40.0% |
| !! | GAACAAAACAAGTGCTGATC+AGG | - | Chr7:14455247-14455266 | None:intergenic | 40.0% |
| CTAACAACTGTCCTCCTTTG+AGG | + | Chr7:14454441-14454460 | MsG0780036822.01.T01:CDS | 45.0% | |
| GAAGCTTACGGTCTTCTTTG+CGG | - | Chr7:14453921-14453940 | None:intergenic | 45.0% | |
| GGCCACCATTGTTGAATGTT+TGG | - | Chr7:14453900-14453919 | None:intergenic | 45.0% | |
| TACCAGGATCAACAATGCTG+AGG | - | Chr7:14455464-14455483 | None:intergenic | 45.0% | |
| TACTGCGTTTACTGATCTCC+AGG | - | Chr7:14455594-14455613 | None:intergenic | 45.0% | |
| ! | CGAGCTTTAGTGTGTATCAG+TGG | + | Chr7:14454669-14454688 | MsG0780036822.01.T01:intron | 45.0% |
| !! | CTCATGAGAGCATCAACAAC+AGG | + | Chr7:14454038-14454057 | MsG0780036822.01.T01:CDS | 45.0% |
| GAGAAGAAAAATGCGGCGAG+TGG | - | Chr7:14453864-14453883 | None:intergenic | 50.0% | |
| TGCCTCAGCATTGTTGATCC+TGG | + | Chr7:14455459-14455478 | MsG0780036822.01.T01:CDS | 50.0% | |
| ACTTTCCGCAAGCAGTGCCA+AGG | - | Chr7:14455425-14455444 | None:intergenic | 55.0% | |
| GTTGACCTTGGCACTGCTTG+CGG | + | Chr7:14455417-14455436 | MsG0780036822.01.T01:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr7 | gene | 14453832 | 14455916 | 14453832 | ID=MsG0780036822.01;Name=MsG0780036822.01 |
| Chr7 | mRNA | 14453832 | 14455916 | 14453832 | ID=MsG0780036822.01.T01;Parent=MsG0780036822.01;Name=MsG0780036822.01.T01;_AED=0.33;_eAED=0.33;_QI=79|1|1|1|0.75|0.6|5|241|135 |
| Chr7 | exon | 14453832 | 14453931 | 14453832 | ID=MsG0780036822.01.T01:exon:2285;Parent=MsG0780036822.01.T01 |
| Chr7 | exon | 14454031 | 14454136 | 14454031 | ID=MsG0780036822.01.T01:exon:2286;Parent=MsG0780036822.01.T01 |
| Chr7 | exon | 14454423 | 14454523 | 14454423 | ID=MsG0780036822.01.T01:exon:2287;Parent=MsG0780036822.01.T01 |
| Chr7 | exon | 14455412 | 14455480 | 14455412 | ID=MsG0780036822.01.T01:exon:2288;Parent=MsG0780036822.01.T01 |
| Chr7 | exon | 14455565 | 14455916 | 14455565 | ID=MsG0780036822.01.T01:exon:2289;Parent=MsG0780036822.01.T01 |
| Chr7 | five_prime_UTR | 14453832 | 14453910 | 14453832 | ID=MsG0780036822.01.T01:five_prime_utr;Parent=MsG0780036822.01.T01 |
| Chr7 | CDS | 14453911 | 14453931 | 14453911 | ID=MsG0780036822.01.T01:cds;Parent=MsG0780036822.01.T01 |
| Chr7 | CDS | 14454031 | 14454136 | 14454031 | ID=MsG0780036822.01.T01:cds;Parent=MsG0780036822.01.T01 |
| Chr7 | CDS | 14454423 | 14454523 | 14454423 | ID=MsG0780036822.01.T01:cds;Parent=MsG0780036822.01.T01 |
| Chr7 | CDS | 14455412 | 14455480 | 14455412 | ID=MsG0780036822.01.T01:cds;Parent=MsG0780036822.01.T01 |
| Chr7 | CDS | 14455565 | 14455675 | 14455565 | ID=MsG0780036822.01.T01:cds;Parent=MsG0780036822.01.T01 |
| Chr7 | three_prime_UTR | 14455676 | 14455916 | 14455676 | ID=MsG0780036822.01.T01:three_prime_utr;Parent=MsG0780036822.01.T01 |
| Gene Sequence |
| Protein sequence |
