Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180005426.01.T01 | XP_003592267.1 | 100 | 111 | 0 | 0 | 29 | 139 | 1 | 111 | 8.82E-71 | 218 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180005426.01.T01 | Q9M352 | 80.18 | 111 | 22 | 0 | 29 | 139 | 1 | 111 | 7.43E-57 | 175 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180005426.01.T01 | G7IAL7 | 100.000 | 111 | 0 | 0 | 29 | 139 | 1 | 111 | 4.22e-71 | 218 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048135.01 | MsG0180005426.01 | 0.805358 | 1.387102e-49 | 7.323622e-47 |
| MsG0080048687.01 | MsG0180005426.01 | 0.865297 | 6.539145e-65 | 2.116689e-61 |
| MsG0080048971.01 | MsG0180005426.01 | 0.906717 | 1.100750e-80 | 1.888029e-76 |
| MsG0180000139.01 | MsG0180005426.01 | 0.823680 | 1.215926e-53 | 1.054252e-50 |
| MsG0180000339.01 | MsG0180005426.01 | 0.857307 | 1.784100e-62 | 4.383725e-59 |
| MsG0180000575.01 | MsG0180005426.01 | 0.827260 | 1.725513e-54 | 1.657337e-51 |
| MsG0180000614.01 | MsG0180005426.01 | 0.861152 | 1.253565e-63 | 3.512130e-60 |
| MsG0180000615.01 | MsG0180005426.01 | 0.845835 | 3.169568e-59 | 5.350821e-56 |
| MsG0180003115.01 | MsG0180005426.01 | 0.820381 | 7.067596e-53 | 5.583804e-50 |
| MsG0180003117.01 | MsG0180005426.01 | 0.884305 | 2.148032e-71 | 1.410315e-67 |
| MsG0180003313.01 | MsG0180005426.01 | 0.848751 | 5.021261e-60 | 9.309100e-57 |
| MsG0180003612.01 | MsG0180005426.01 | 0.873092 | 1.921505e-67 | 8.234989e-64 |
| MsG0180003793.01 | MsG0180005426.01 | 0.898223 | 6.546234e-77 | 7.666603e-73 |
| MsG0180004009.01 | MsG0180005426.01 | 0.829313 | 5.521419e-55 | 5.631455e-52 |
| MsG0180004129.01 | MsG0180005426.01 | 0.879163 | 1.559639e-69 | 8.367616e-66 |
| MsG0180004130.01 | MsG0180005426.01 | 0.889319 | 2.694474e-73 | 2.163176e-69 |
| MsG0180004509.01 | MsG0180005426.01 | 0.822070 | 2.883176e-53 | 2.387810e-50 |
| MsG0180004607.01 | MsG0180005426.01 | 0.834816 | 2.408283e-56 | 2.890332e-53 |
| MsG0180004622.01 | MsG0180005426.01 | 0.853640 | 2.091050e-61 | 4.548475e-58 |
| MsG0180004854.01 | MsG0180005426.01 | 0.855810 | 4.914216e-62 | 1.148715e-58 |
| MsG0180005361.01 | MsG0180005426.01 | 0.867666 | 1.156380e-65 | 4.070094e-62 |
| MsG0180005366.01 | MsG0180005426.01 | 0.882044 | 1.448310e-70 | 8.688296e-67 |
| MsG0180005426.01 | MsG0180005659.01 | 0.858618 | 7.278030e-63 | 1.868725e-59 |
| MsG0180005426.01 | MsG0180005851.01 | 0.858180 | 9.831615e-63 | 2.487561e-59 |
| MsG0180005426.01 | MsG0280006406.01 | 0.818806 | 1.617004e-52 | 1.222709e-49 |
| MsG0180005426.01 | MsG0280006424.01 | 0.855093 | 7.948368e-62 | 1.814010e-58 |
| MsG0180005426.01 | MsG0280006741.01 | 0.840388 | 8.962225e-58 | 1.274675e-54 |
| MsG0180005426.01 | MsG0280006819.01 | 0.901033 | 4.031324e-78 | 5.345332e-74 |
| MsG0180005426.01 | MsG0280006836.01 | 0.871721 | 5.509315e-67 | 2.245111e-63 |
| MsG0180005426.01 | MsG0280006993.01 | 0.843267 | 1.556097e-58 | 2.421687e-55 |
| MsG0180005426.01 | MsG0280007634.01 | 0.803573 | 3.269074e-49 | 1.648576e-46 |
| MsG0180005426.01 | MsG0280007643.01 | 0.829686 | 4.479867e-55 | 4.618733e-52 |
| MsG0180005426.01 | MsG0280008118.01 | 0.888404 | 6.083441e-73 | 4.706762e-69 |
| MsG0180005426.01 | MsG0280008283.01 | 0.838164 | 3.382520e-57 | 4.492560e-54 |
| MsG0180005426.01 | MsG0280009141.01 | 0.801342 | 9.418793e-49 | 4.487292e-46 |
| MsG0180005426.01 | MsG0280009372.01 | 0.846082 | 2.715795e-59 | 4.620648e-56 |
| MsG0180005426.01 | MsG0280009375.01 | 0.918785 | 1.014368e-86 | 3.145389e-82 |
| MsG0180005426.01 | MsG0280009591.01 | 0.807801 | 4.233496e-50 | 2.380361e-47 |
| MsG0180005426.01 | MsG0280010258.01 | 0.848882 | 4.618164e-60 | 8.598505e-57 |
| MsG0180005426.01 | MsG0280010383.01 | 0.853531 | 2.246407e-61 | 4.869101e-58 |
| MsG0180005426.01 | MsG0280010495.01 | 0.905960 | 2.468717e-80 | 4.092919e-76 |
| MsG0180005426.01 | MsG0280010525.01 | 0.850526 | 1.603708e-60 | 3.150242e-57 |
| MsG0180005426.01 | MsG0280010776.01 | 0.811258 | 7.658234e-51 | 4.718088e-48 |
| MsG0180005426.01 | MsG0280010801.01 | 0.894237 | 2.978209e-75 | 2.935578e-71 |
| MsG0180005426.01 | MsG0280010995.01 | 0.848155 | 7.339594e-60 | 1.334447e-56 |
| MsG0180005426.01 | MsG0280011234.01 | 0.838478 | 2.807461e-57 | 3.764921e-54 |
| MsG0180005426.01 | MsG0280011387.01 | 0.815519 | 8.870864e-52 | 6.129757e-49 |
| MsG0180005426.01 | MsG0380012073.01 | 0.913370 | 6.661457e-84 | 1.570155e-79 |
| MsG0180005426.01 | MsG0380012108.01 | 0.838701 | 2.459483e-57 | 3.320934e-54 |
| MsG0180005426.01 | MsG0380015027.01 | 0.831497 | 1.614115e-55 | 1.754681e-52 |
| MsG0180005426.01 | MsG0380015494.01 | 0.814493 | 1.497816e-51 | 1.006572e-48 |
| MsG0180005426.01 | MsG0380016577.01 | 0.804435 | 2.162960e-49 | 1.115125e-46 |
| MsG0180005426.01 | MsG0380017382.01 | 0.841616 | 4.266002e-58 | 6.303389e-55 |
| MsG0180005426.01 | MsG0380017556.01 | 0.806405 | 8.358303e-50 | 4.532742e-47 |
| MsG0180005426.01 | MsG0480018084.01 | 0.821017 | 5.047906e-53 | 4.059388e-50 |
| MsG0180005426.01 | MsG0480018252.01 | 0.869365 | 3.270308e-66 | 1.224247e-62 |
| MsG0180005426.01 | MsG0480018477.01 | 0.880258 | 6.363351e-70 | 3.560391e-66 |
| MsG0180005426.01 | MsG0480020959.01 | 0.861269 | 1.154854e-63 | 3.249283e-60 |
| MsG0180005426.01 | MsG0480021006.01 | 0.877620 | 5.431472e-69 | 2.748842e-65 |
| MsG0180005426.01 | MsG0480021159.01 | 0.810158 | 1.324711e-50 | 7.926566e-48 |
| MsG0180005426.01 | MsG0480022913.01 | 0.810136 | 1.339450e-50 | 8.010118e-48 |
| MsG0180005426.01 | MsG0480023149.01 | 0.920689 | 9.301858e-88 | 3.197643e-83 |
| MsG0180005426.01 | MsG0480023399.01 | 0.826239 | 3.025498e-54 | 2.821337e-51 |
| MsG0180005426.01 | MsG0480023467.01 | 0.902610 | 8.130093e-79 | 1.160830e-74 |
| MsG0180005426.01 | MsG0480023559.01 | 0.820423 | 6.914142e-53 | 5.468732e-50 |
| MsG0180005426.01 | MsG0480023968.01 | 0.811210 | 7.846160e-51 | 4.827723e-48 |
| MsG0180005426.01 | MsG0580024369.01 | 0.863490 | 2.398706e-64 | 7.284101e-61 |
| MsG0180005426.01 | MsG0580025400.01 | 0.823646 | 1.238569e-53 | 1.072784e-50 |
| MsG0180005426.01 | MsG0580027043.01 | 0.904838 | 8.073853e-80 | 1.271386e-75 |
| MsG0180005426.01 | MsG0580029132.01 | 0.898932 | 3.264916e-77 | 3.945561e-73 |
| MsG0180005426.01 | MsG0680031628.01 | 0.812321 | 4.495400e-51 | 2.849380e-48 |
| MsG0180005426.01 | MsG0680031763.01 | 0.877625 | 5.408869e-69 | 2.737973e-65 |
| MsG0180005426.01 | MsG0680032430.01 | 0.800188 | 1.620070e-48 | 7.495736e-46 |
| MsG0180005426.01 | MsG0680032770.01 | 0.878530 | 2.605912e-69 | 1.365446e-65 |
| MsG0180005426.01 | MsG0680035848.01 | 0.849684 | 2.761286e-60 | 5.277016e-57 |
| MsG0180005426.01 | MsG0780036240.01 | 0.880343 | 5.936689e-70 | 3.332473e-66 |
| MsG0180005426.01 | MsG0780036546.01 | 0.808128 | 3.606004e-50 | 2.045093e-47 |
| MsG0180005426.01 | MsG0780036547.01 | 0.872341 | 3.425592e-67 | 1.428255e-63 |
| MsG0180005426.01 | MsG0780036822.01 | 0.868549 | 6.011244e-66 | 2.183321e-62 |
| MsG0180005426.01 | MsG0780038400.01 | 0.888814 | 4.227971e-73 | 3.324878e-69 |
| MsG0180005426.01 | MsG0780038587.01 | 0.902327 | 1.086254e-78 | 1.529959e-74 |
| MsG0180005426.01 | MsG0780038645.01 | 0.802646 | 5.083523e-49 | 2.503297e-46 |
| MsG0180005426.01 | MsG0780040338.01 | 0.891867 | 2.683461e-74 | 2.394051e-70 |
| MsG0180005426.01 | MsG0780040782.01 | 0.823112 | 1.650685e-53 | 1.408339e-50 |
| MsG0180005426.01 | MsG0780040900.01 | 0.839768 | 1.300369e-57 | 1.813946e-54 |
| MsG0180005426.01 | MsG0780041058.01 | 0.815449 | 9.191399e-52 | 6.339017e-49 |
| MsG0180005426.01 | MsG0780041147.01 | 0.874093 | 8.837186e-68 | 3.926308e-64 |
| MsG0180005426.01 | MsG0780041223.01 | 0.888784 | 4.343223e-73 | 3.411465e-69 |
| MsG0180005426.01 | MsG0780041224.01 | 0.817608 | 3.019239e-52 | 2.209010e-49 |
| MsG0180005426.01 | MsG0780041295.01 | 0.818561 | 1.837888e-52 | 1.380392e-49 |
| MsG0180005426.01 | MsG0780041332.01 | 0.812996 | 3.200590e-51 | 2.065174e-48 |
| MsG0180005426.01 | MsG0780041461.01 | 0.801566 | 8.475120e-49 | 4.060450e-46 |
| MsG0180005426.01 | MsG0780041519.01 | 0.891771 | 2.929422e-74 | 2.603781e-70 |
| MsG0180005426.01 | MsG0880041967.01 | 0.864689 | 1.014890e-64 | 3.214871e-61 |
| MsG0180005426.01 | MsG0880042125.01 | 0.849616 | 2.884673e-60 | 5.500323e-57 |
| MsG0180005426.01 | MsG0880042581.01 | 0.812986 | 3.216677e-51 | 2.074954e-48 |
| MsG0180005426.01 | MsG0880042604.01 | 0.823000 | 1.753099e-53 | 1.490962e-50 |
| MsG0180005426.01 | MsG0880043517.01 | 0.821121 | 4.778851e-53 | 3.853785e-50 |
| MsG0180005426.01 | MsG0880043770.01 | 0.826000 | 3.449070e-54 | 3.194596e-51 |
| MsG0180005426.01 | MsG0880044711.01 | 0.834507 | 2.879389e-56 | 3.424385e-53 |
| MsG0180005426.01 | MsG0880046177.01 | 0.867758 | 1.080456e-65 | 3.815251e-62 |
| MsG0180005426.01 | MsG0880046444.01 | 0.885668 | 6.668688e-72 | 4.618209e-68 |
| MsG0180005426.01 | MsG0880046575.01 | 0.867451 | 1.355923e-65 | 4.736498e-62 |
| MsG0180005426.01 | MsG0880046879.01 | 0.865617 | 5.185100e-65 | 1.697931e-61 |
| MsG0180005426.01 | MsG0880046933.01 | 0.855422 | 6.377208e-62 | 1.471608e-58 |
| MsG0180005426.01 | MsG0880047082.01 | 0.802185 | 6.326077e-49 | 3.078794e-46 |
| MsG0180005426.01 | MsG0880047427.01 | 0.815272 | 1.006625e-51 | 6.908604e-49 |
| MsG0180005426.01 | MsG0880047448.01 | 0.811799 | 5.842157e-51 | 3.650985e-48 |
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0680032770.01 | MsG0180005426.01 | PPI |
| MsG0380018056.01 | MsG0180005426.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180005426.01.T01 | MTR_1g100960 | 100.000 | 111 | 0 | 0 | 29 | 139 | 1 | 111 | 1.07e-74 | 218 |
| MsG0180005426.01.T01 | MTR_6g053730 | 96.396 | 111 | 4 | 0 | 29 | 139 | 1 | 111 | 5.56e-72 | 211 |
| MsG0180005426.01.T01 | MTR_1g100960 | 100.000 | 101 | 0 | 0 | 29 | 129 | 1 | 101 | 1.06e-67 | 200 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180005426.01.T01 | AT3G53740 | 80.180 | 111 | 22 | 0 | 29 | 139 | 1 | 111 | 7.58e-58 | 175 |
| MsG0180005426.01.T01 | AT3G53740 | 80.180 | 111 | 22 | 0 | 29 | 139 | 1 | 111 | 7.58e-58 | 175 |
| MsG0180005426.01.T01 | AT3G53740 | 80.180 | 111 | 22 | 0 | 29 | 139 | 1 | 111 | 7.58e-58 | 175 |
| MsG0180005426.01.T01 | AT2G37600 | 82.692 | 104 | 18 | 0 | 36 | 139 | 8 | 111 | 5.93e-56 | 171 |
| MsG0180005426.01.T01 | AT2G37600 | 82.692 | 104 | 18 | 0 | 36 | 139 | 8 | 111 | 5.93e-56 | 171 |
| MsG0180005426.01.T01 | AT5G02450 | 83.019 | 106 | 17 | 1 | 35 | 139 | 3 | 108 | 1.23e-55 | 169 |
| MsG0180005426.01.T01 | AT3G53740 | 72.072 | 111 | 22 | 1 | 29 | 139 | 1 | 102 | 1.43e-48 | 151 |
Find 50 sgRNAs with CRISPR-Local
Find 88 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCGCACTCTCTCTGGTGTT+AGG | 0.277881 | 1:+91712318 | MsG0180005426.01.T01:CDS |
| AAACCAGTACTTGGTTGTTT+AGG | 0.306770 | 1:-91712482 | None:intergenic |
| CTTCTTCTTTGCACGTTTGT+GGG | 0.313110 | 1:-91713142 | None:intergenic |
| TCTTCTTCTTTGCACGTTTG+TGG | 0.365751 | 1:-91713143 | None:intergenic |
| TTTATTTGTGACAGGAGAAA+TGG | 0.397262 | 1:+91712457 | MsG0180005426.01.T01:intron |
| AAAAGACAAGAGGGCACTTA+AGG | 0.398330 | 1:+91713098 | MsG0180005426.01.T01:CDS |
| CCGCACTCTCTCTGGTGTTA+GGG | 0.410246 | 1:+91712319 | MsG0180005426.01.T01:CDS |
| CCATTCCACCGCACTCTCTC+TGG | 0.423239 | 1:+91712311 | MsG0180005426.01.T01:CDS |
| TCCACGTCCTTCAGCTCGCA+AGG | 0.427898 | 1:+91712553 | MsG0180005426.01.T01:CDS |
| TGCAGGGCTGGTGGTGGAGC+AGG | 0.430321 | 1:+91713313 | MsG0180005426.01.T01:intron |
| AGCAGGAGATAAGAAGAAAT+AGG | 0.434078 | 1:+91713330 | MsG0180005426.01.T01:CDS |
| CATCGTCACAAAGAAGGAAT+TGG | 0.434230 | 1:+91712529 | MsG0180005426.01.T01:CDS |
| GAAGTGAAGAAGCTAACCTT+AGG | 0.445240 | 1:-91712289 | None:intergenic |
| CCAAGTACTGGTTTGTTCGT+TGG | 0.458873 | 1:+91712491 | MsG0180005426.01.T01:CDS |
| AAGGTTGCAAAGAGAAAGCT+TGG | 0.461674 | 1:+91713117 | MsG0180005426.01.T01:CDS |
| CCAACGAACAAACCAGTACT+TGG | 0.464574 | 1:-91712491 | None:intergenic |
| CCAGAGAGAGTGCGGTGGAA+TGG | 0.480153 | 1:-91712311 | None:intergenic |
| AACCTCATTAGAGAGGTTGC+TGG | 0.487721 | 1:+91713030 | MsG0180005426.01.T01:CDS |
| ATCACTGAGTTGCTCAAGGT+TGG | 0.503868 | 1:+91713075 | MsG0180005426.01.T01:CDS |
| TCAATGTGCAGGGCTGGTGG+TGG | 0.508415 | 1:+91713307 | MsG0180005426.01.T01:intron |
| AGGAGATGTCTAATGTCCTC+AGG | 0.510350 | 1:+91713169 | MsG0180005426.01.T01:CDS |
| ACCTCATTAGAGAGGTTGCT+GGG | 0.511316 | 1:+91713031 | MsG0180005426.01.T01:CDS |
| CCCTTGCGAGCTGAAGGACG+TGG | 0.511446 | 1:-91712554 | None:intergenic |
| TCTGAGATCACCGTCACTAC+AGG | 0.512556 | 1:+91712344 | MsG0180005426.01.T01:CDS |
| TTTGTTATGGCTTCACATGA+TGG | 0.517974 | 1:+91713364 | MsG0180005426.01.T01:three_prime_UTR |
| CCACGTCCTTCAGCTCGCAA+GGG | 0.521414 | 1:+91712554 | MsG0180005426.01.T01:CDS |
| TTGTTATGGCTTCACATGAT+GGG | 0.522554 | 1:+91713365 | MsG0180005426.01.T01:three_prime_UTR |
| AGGCCACATCGTCACAAAGA+AGG | 0.551215 | 1:+91712523 | MsG0180005426.01.T01:CDS |
| GCTCCTAAACAACCAAGTAC+TGG | 0.551611 | 1:+91712479 | MsG0180005426.01.T01:CDS |
| CACGTCCTTCAGCTCGCAAG+GGG | 0.561496 | 1:+91712555 | MsG0180005426.01.T01:CDS |
| ATTCCTTCTTTGTGACGATG+TGG | 0.577252 | 1:-91712526 | None:intergenic |
| TTGTTCGTTGGATTGAACAA+AGG | 0.583526 | 1:+91712503 | MsG0180005426.01.T01:CDS |
| TCAGTGATACGCTTCTCGTA+AGG | 0.584616 | 1:-91713060 | None:intergenic |
| AAGTGAAGAAGCTAACCTTA+GGG | 0.585753 | 1:-91712288 | None:intergenic |
| ACCCAGCAACCTCTCTAATG+AGG | 0.601885 | 1:-91713032 | None:intergenic |
| TGTGAGGAACCTCATTAGAG+AGG | 0.602916 | 1:+91713023 | MsG0180005426.01.T01:CDS |
| TCGTTCAGAAAACAAGCAAG+AGG | 0.606732 | 1:+91712992 | MsG0180005426.01.T01:intron |
| CCCTAACACCAGAGAGAGTG+CGG | 0.614155 | 1:-91712319 | None:intergenic |
| ACGTGCAAAGAAGAAGAGAG+AGG | 0.618868 | 1:+91713149 | MsG0180005426.01.T01:CDS |
| GCAAGAGGGTGCACTTTGTG+AGG | 0.622900 | 1:+91713007 | MsG0180005426.01.T01:CDS |
| GAAATGAATACCTGTAGTGA+CGG | 0.626819 | 1:-91712354 | None:intergenic |
| CTAATGTCCTCAGGAAGATG+AGG | 0.627117 | 1:+91713178 | MsG0180005426.01.T01:CDS |
| CAAGGTTGGAAAAGACAAGA+GGG | 0.628294 | 1:+91713089 | MsG0180005426.01.T01:CDS |
| GCGTATCACTGAGTTGCTCA+AGG | 0.629950 | 1:+91713071 | MsG0180005426.01.T01:CDS |
| CGTTCAGAAAACAAGCAAGA+GGG | 0.632672 | 1:+91712993 | MsG0180005426.01.T01:intron |
| AGATCCTCGAAAGAACCCTA+AGG | 0.650922 | 1:+91712273 | None:intergenic |
| TCAAGGTTGGAAAAGACAAG+AGG | 0.663036 | 1:+91713088 | MsG0180005426.01.T01:CDS |
| GAACAAACCTCATCTTCCTG+AGG | 0.694769 | 1:-91713185 | None:intergenic |
| ACGTCCTTCAGCTCGCAAGG+GGG | 0.706112 | 1:+91712556 | MsG0180005426.01.T01:CDS |
| TAACACCAGAGAGAGTGCGG+TGG | 0.731080 | 1:-91712316 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTAAATCTAACATAAAA+TGG | - | Chr1:91712618-91712637 | None:intergenic | 10.0% |
| !!! | ATTTTATGTTAGATTTAAAT+TGG | + | Chr1:91712617-91712636 | MsG0180005426.01.T01:intron | 10.0% |
| !!! | TAGATATCAAAAGATTTTAT+GGG | + | Chr1:91713528-91713547 | MsG0180005426.01.T01:three_prime_UTR | 15.0% |
| !!! | TTTATGGGTTTATATTTTTA+AGG | + | Chr1:91713543-91713562 | MsG0180005426.01.T01:three_prime_UTR | 15.0% |
| !! | AACGAATAAAAACAATCTTT+AGG | - | Chr1:91712977-91712996 | None:intergenic | 20.0% |
| !! | ACGAATAAAAACAATCTTTA+GGG | - | Chr1:91712976-91712995 | None:intergenic | 20.0% |
| !!! | AAATTGGAATTATTAGCTTA+AGG | + | Chr1:91712633-91712652 | MsG0180005426.01.T01:intron | 20.0% |
| !!! | CTAGATATCAAAAGATTTTA+TGG | + | Chr1:91713527-91713546 | MsG0180005426.01.T01:three_prime_UTR | 20.0% |
| !!! | TTTGTTATTATTGTTATGCT+TGG | + | Chr1:91713215-91713234 | MsG0180005426.01.T01:intron | 20.0% |
| ! | AATAGAAGGAGAAATAATGT+TGG | + | Chr1:91712858-91712877 | MsG0180005426.01.T01:intron | 25.0% |
| ! | ATAGAAGGAGAAATAATGTT+GGG | + | Chr1:91712859-91712878 | MsG0180005426.01.T01:intron | 25.0% |
| ! | ATTAATTCATAAGCTTGTCA+AGG | + | Chr1:91712766-91712785 | MsG0180005426.01.T01:intron | 25.0% |
| ! | CATTATTTCATTCATTCCTA+TGG | - | Chr1:91712907-91712926 | None:intergenic | 25.0% |
| ! | CGAATAAAAACAATCTTTAG+GGG | - | Chr1:91712975-91712994 | None:intergenic | 25.0% |
| ! | GTTATTATGATAAACATTCC+CGG | + | Chr1:91713244-91713263 | MsG0180005426.01.T01:intron | 25.0% |
| ! | TTAAGAAAAAACTGCTTATG+AGG | + | Chr1:91712793-91712812 | MsG0180005426.01.T01:intron | 25.0% |
| ! | TTATGAGGATGATATTTATG+AGG | + | Chr1:91712808-91712827 | MsG0180005426.01.T01:intron | 25.0% |
| ! | TTATTGTTATGCTTGGTATT+TGG | + | Chr1:91713222-91713241 | MsG0180005426.01.T01:intron | 25.0% |
| ! | TTTGTTTGTTTATTTGTGAC+AGG | + | Chr1:91712449-91712468 | MsG0180005426.01.T01:intron | 25.0% |
| !! | TTAGATATTTTCAATGTGCA+GGG | + | Chr1:91713297-91713316 | MsG0180005426.01.T01:intron | 25.0% |
| !! | TTTAGATATTTTCAATGTGC+AGG | + | Chr1:91713296-91713315 | MsG0180005426.01.T01:intron | 25.0% |
| !!! | GGTTTTGTTTACTTTTGTTA+TGG | + | Chr1:91713351-91713370 | MsG0180005426.01.T01:exon | 25.0% |
| CTTTGTATTAAGGATCTGTT+TGG | + | Chr1:91712692-91712711 | MsG0180005426.01.T01:intron | 30.0% | |
| TAGGGAGATATATGAATAGA+AGG | + | Chr1:91712844-91712863 | MsG0180005426.01.T01:intron | 30.0% | |
| TATGCTCGTACTTTGTATTA+AGG | + | Chr1:91712682-91712701 | MsG0180005426.01.T01:intron | 30.0% | |
| TATTAAGGATCTGTTTGGAT+TGG | + | Chr1:91712697-91712716 | MsG0180005426.01.T01:intron | 30.0% | |
| TATTTCATTCATTCCTATGG+TGG | - | Chr1:91712904-91712923 | None:intergenic | 30.0% | |
| TTTATTTGTGACAGGAGAAA+TGG | + | Chr1:91712457-91712476 | MsG0180005426.01.T01:intron | 30.0% | |
| ! | ATGAGGATGACATTTTTGTT+AGG | + | Chr1:91712825-91712844 | MsG0180005426.01.T01:intron | 30.0% |
| ! | TGAGGATGACATTTTTGTTA+GGG | + | Chr1:91712826-91712845 | MsG0180005426.01.T01:intron | 30.0% |
| ! | TTTTTGCATTCTGTTCATCT+TGG | + | Chr1:91712943-91712962 | MsG0180005426.01.T01:intron | 30.0% |
| AAACCAGTACTTGGTTGTTT+AGG | - | Chr1:91712485-91712504 | None:intergenic | 35.0% | |
| AAGTGAAGAAGCTAACCTTA+GGG | - | Chr1:91712291-91712310 | None:intergenic | 35.0% | |
| AGCAGGAGATAAGAAGAAAT+AGG | + | Chr1:91713330-91713349 | MsG0180005426.01.T01:CDS | 35.0% | |
| ATACACTATCTATCCACCAT+AGG | + | Chr1:91712888-91712907 | MsG0180005426.01.T01:intron | 35.0% | |
| ATTGAGATAATCGAAGAACG+AGG | - | Chr1:91712384-91712403 | None:intergenic | 35.0% | |
| CAATAACAAGAACATGTTCC+GGG | - | Chr1:91713265-91713284 | None:intergenic | 35.0% | |
| CCAATAACAAGAACATGTTC+CGG | - | Chr1:91713266-91713285 | None:intergenic | 35.0% | |
| GAAATGAATACCTGTAGTGA+CGG | - | Chr1:91712357-91712376 | None:intergenic | 35.0% | |
| TTGTTATGGCTTCACATGAT+GGG | + | Chr1:91713365-91713384 | MsG0180005426.01.T01:three_prime_UTR | 35.0% | |
| TTGTTCGTTGGATTGAACAA+AGG | + | Chr1:91712503-91712522 | MsG0180005426.01.T01:CDS | 35.0% | |
| ! | TTTGTTATGGCTTCACATGA+TGG | + | Chr1:91713364-91713383 | MsG0180005426.01.T01:three_prime_UTR | 35.0% |
| AAGGTTGCAAAGAGAAAGCT+TGG | + | Chr1:91713117-91713136 | MsG0180005426.01.T01:CDS | 40.0% | |
| ATTCCTTCTTTGTGACGATG+TGG | - | Chr1:91712529-91712548 | None:intergenic | 40.0% | |
| CAAGGTTGGAAAAGACAAGA+GGG | + | Chr1:91713089-91713108 | MsG0180005426.01.T01:CDS | 40.0% | |
| CATCGTCACAAAGAAGGAAT+TGG | + | Chr1:91712529-91712548 | MsG0180005426.01.T01:CDS | 40.0% | |
| CATTCTGTTCATCTTGGATG+TGG | + | Chr1:91712949-91712968 | MsG0180005426.01.T01:intron | 40.0% | |
| CGTTCAGAAAACAAGCAAGA+GGG | + | Chr1:91712993-91713012 | MsG0180005426.01.T01:intron | 40.0% | |
| CTTCTTCTTTGCACGTTTGT+GGG | - | Chr1:91713145-91713164 | None:intergenic | 40.0% | |
| GAAGTGAAGAAGCTAACCTT+AGG | - | Chr1:91712292-91712311 | None:intergenic | 40.0% | |
| TCAAGGTTGGAAAAGACAAG+AGG | + | Chr1:91713088-91713107 | MsG0180005426.01.T01:CDS | 40.0% | |
| TCGTTCAGAAAACAAGCAAG+AGG | + | Chr1:91712992-91713011 | MsG0180005426.01.T01:intron | 40.0% | |
| TCTTCTTCTTTGCACGTTTG+TGG | - | Chr1:91713146-91713165 | None:intergenic | 40.0% | |
| ! | ATATTTTCAATGTGCAGGGC+TGG | + | Chr1:91713301-91713320 | MsG0180005426.01.T01:intron | 40.0% |
| ! | CCGGAACATGTTCTTGTTAT+TGG | + | Chr1:91713263-91713282 | MsG0180005426.01.T01:intron | 40.0% |
| !! | AAAAGACAAGAGGGCACTTA+AGG | + | Chr1:91713098-91713117 | MsG0180005426.01.T01:CDS | 40.0% |
| AACCTCATTAGAGAGGTTGC+TGG | + | Chr1:91713030-91713049 | MsG0180005426.01.T01:CDS | 45.0% | |
| ACCTCATTAGAGAGGTTGCT+GGG | + | Chr1:91713031-91713050 | MsG0180005426.01.T01:CDS | 45.0% | |
| ACGTGCAAAGAAGAAGAGAG+AGG | + | Chr1:91713149-91713168 | MsG0180005426.01.T01:CDS | 45.0% | |
| AGGAGATGTCTAATGTCCTC+AGG | + | Chr1:91713169-91713188 | MsG0180005426.01.T01:CDS | 45.0% | |
| ATCACTGAGTTGCTCAAGGT+TGG | + | Chr1:91713075-91713094 | MsG0180005426.01.T01:CDS | 45.0% | |
| CCAACGAACAAACCAGTACT+TGG | - | Chr1:91712494-91712513 | None:intergenic | 45.0% | |
| CTAATGTCCTCAGGAAGATG+AGG | + | Chr1:91713178-91713197 | MsG0180005426.01.T01:CDS | 45.0% | |
| GAACAAACCTCATCTTCCTG+AGG | - | Chr1:91713188-91713207 | None:intergenic | 45.0% | |
| GCTCCTAAACAACCAAGTAC+TGG | + | Chr1:91712479-91712498 | MsG0180005426.01.T01:CDS | 45.0% | |
| TCAGTGATACGCTTCTCGTA+AGG | - | Chr1:91713063-91713082 | None:intergenic | 45.0% | |
| TGTGAGGAACCTCATTAGAG+AGG | + | Chr1:91713023-91713042 | MsG0180005426.01.T01:CDS | 45.0% | |
| !! | CCAAGTACTGGTTTGTTCGT+TGG | + | Chr1:91712491-91712510 | MsG0180005426.01.T01:CDS | 45.0% |
| ACCCAGCAACCTCTCTAATG+AGG | - | Chr1:91713035-91713054 | None:intergenic | 50.0% | |
| AGGCCACATCGTCACAAAGA+AGG | + | Chr1:91712523-91712542 | MsG0180005426.01.T01:CDS | 50.0% | |
| GCGTATCACTGAGTTGCTCA+AGG | + | Chr1:91713071-91713090 | MsG0180005426.01.T01:CDS | 50.0% | |
| ! | TCTGAGATCACCGTCACTAC+AGG | + | Chr1:91712344-91712363 | MsG0180005426.01.T01:CDS | 50.0% |
| ! | TTTTCAATGTGCAGGGCTGG+TGG | + | Chr1:91713304-91713323 | MsG0180005426.01.T01:intron | 50.0% |
| ACCGCACTCTCTCTGGTGTT+AGG | + | Chr1:91712318-91712337 | MsG0180005426.01.T01:CDS | 55.0% | |
| CCCTAACACCAGAGAGAGTG+CGG | - | Chr1:91712322-91712341 | None:intergenic | 55.0% | |
| ! | CCGCACTCTCTCTGGTGTTA+GGG | + | Chr1:91712319-91712338 | MsG0180005426.01.T01:CDS | 55.0% |
| ! | GCAAGAGGGTGCACTTTGTG+AGG | + | Chr1:91713007-91713026 | MsG0180005426.01.T01:CDS | 55.0% |
| ! | TAACACCAGAGAGAGTGCGG+TGG | - | Chr1:91712319-91712338 | None:intergenic | 55.0% |
| ACGTCCTTCAGCTCGCAAGG+GGG | + | Chr1:91712556-91712575 | MsG0180005426.01.T01:CDS | 60.0% | |
| CACGTCCTTCAGCTCGCAAG+GGG | + | Chr1:91712555-91712574 | MsG0180005426.01.T01:CDS | 60.0% | |
| CCACGTCCTTCAGCTCGCAA+GGG | + | Chr1:91712554-91712573 | MsG0180005426.01.T01:CDS | 60.0% | |
| CCATTCCACCGCACTCTCTC+TGG | + | Chr1:91712311-91712330 | MsG0180005426.01.T01:CDS | 60.0% | |
| TCCACGTCCTTCAGCTCGCA+AGG | + | Chr1:91712553-91712572 | MsG0180005426.01.T01:CDS | 60.0% | |
| ! | CCAGAGAGAGTGCGGTGGAA+TGG | - | Chr1:91712314-91712333 | None:intergenic | 60.0% |
| ! | TCAATGTGCAGGGCTGGTGG+TGG | + | Chr1:91713307-91713326 | MsG0180005426.01.T01:intron | 60.0% |
| CCCTTGCGAGCTGAAGGACG+TGG | - | Chr1:91712557-91712576 | None:intergenic | 65.0% | |
| CTGACCCCCTTGCGAGCTGA+AGG | - | Chr1:91712563-91712582 | None:intergenic | 65.0% | |
| !! | TGCAGGGCTGGTGGTGGAGC+AGG | + | Chr1:91713313-91713332 | MsG0180005426.01.T01:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 91712287 | 91713580 | 91712287 | ID=MsG0180005426.01;Name=MsG0180005426.01 |
| Chr1 | mRNA | 91712287 | 91713580 | 91712287 | ID=MsG0180005426.01.T01;Parent=MsG0180005426.01;Name=MsG0180005426.01.T01;_AED=0.28;_eAED=0.28;_QI=0|1|1|1|0.66|0.5|4|229|139 |
| Chr1 | exon | 91712287 | 91712365 | 91712287 | ID=MsG0180005426.01.T01:exon:48593;Parent=MsG0180005426.01.T01 |
| Chr1 | exon | 91712471 | 91712577 | 91712471 | ID=MsG0180005426.01.T01:exon:48594;Parent=MsG0180005426.01.T01 |
| Chr1 | exon | 91713000 | 91713199 | 91713000 | ID=MsG0180005426.01.T01:exon:48595;Parent=MsG0180005426.01.T01 |
| Chr1 | exon | 91713318 | 91713580 | 91713318 | ID=MsG0180005426.01.T01:exon:48596;Parent=MsG0180005426.01.T01 |
| Chr1 | CDS | 91712287 | 91712365 | 91712287 | ID=MsG0180005426.01.T01:cds;Parent=MsG0180005426.01.T01 |
| Chr1 | CDS | 91712471 | 91712577 | 91712471 | ID=MsG0180005426.01.T01:cds;Parent=MsG0180005426.01.T01 |
| Chr1 | CDS | 91713000 | 91713199 | 91713000 | ID=MsG0180005426.01.T01:cds;Parent=MsG0180005426.01.T01 |
| Chr1 | CDS | 91713318 | 91713351 | 91713318 | ID=MsG0180005426.01.T01:cds;Parent=MsG0180005426.01.T01 |
| Chr1 | three_prime_UTR | 91713352 | 91713580 | 91713352 | ID=MsG0180005426.01.T01:three_prime_utr;Parent=MsG0180005426.01.T01 |
| Gene Sequence |
| Protein sequence |
