Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180005361.01.T01 | XP_003592049.1 | 100 | 152 | 0 | 0 | 1 | 152 | 1 | 152 | 5.57E-108 | 314 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180005361.01.T01 | P34788 | 92.763 | 152 | 11 | 0 | 1 | 152 | 1 | 152 | 1.93E-104 | 298 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180005361.01.T01 | B7FMJ8 | 100.000 | 152 | 0 | 0 | 1 | 152 | 1 | 152 | 2.66e-108 | 314 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048687.01 | MsG0180005361.01 | 0.827786 | 1.290910e-54 | 1.258839e-51 |
| MsG0080048971.01 | MsG0180005361.01 | 0.852729 | 3.812806e-61 | 8.042428e-58 |
| MsG0180003313.01 | MsG0180005361.01 | 0.858228 | 9.514459e-63 | 2.411066e-59 |
| MsG0180003729.01 | MsG0180005361.01 | 0.827325 | 1.665438e-54 | 1.602646e-51 |
| MsG0180003793.01 | MsG0180005361.01 | 0.803850 | 2.863599e-49 | 1.454377e-46 |
| MsG0180004607.01 | MsG0180005361.01 | 0.899299 | 2.274228e-77 | 2.795254e-73 |
| MsG0180004609.01 | MsG0180005361.01 | 0.806971 | 6.348844e-50 | 3.493473e-47 |
| MsG0180004622.01 | MsG0180005361.01 | 0.898580 | 4.617492e-77 | 5.490622e-73 |
| MsG0180004625.01 | MsG0180005361.01 | 0.845717 | 3.413032e-59 | 5.739712e-56 |
| MsG0180005361.01 | MsG0180005366.01 | 0.930445 | 1.620568e-93 | 9.607631e-89 |
| MsG0180005361.01 | MsG0180005426.01 | 0.867666 | 1.156380e-65 | 4.070094e-62 |
| MsG0180005361.01 | MsG0280006819.01 | 0.866620 | 2.496259e-65 | 8.468065e-62 |
| MsG0180005361.01 | MsG0280006836.01 | 0.819789 | 9.655699e-53 | 7.503867e-50 |
| MsG0180005361.01 | MsG0280007643.01 | 0.816697 | 4.837475e-52 | 3.452051e-49 |
| MsG0180005361.01 | MsG0280007995.01 | 0.821438 | 4.037604e-53 | 3.284772e-50 |
| MsG0180005361.01 | MsG0280010002.01 | 0.807137 | 5.854781e-50 | 3.235476e-47 |
| MsG0180005361.01 | MsG0280010495.01 | 0.872239 | 3.703827e-67 | 1.538561e-63 |
| MsG0180005361.01 | MsG0280010525.01 | 0.838962 | 2.105313e-57 | 2.865136e-54 |
| MsG0180005361.01 | MsG0280010801.01 | 0.851450 | 8.808241e-61 | 1.783527e-57 |
| MsG0180005361.01 | MsG0280011149.01 | 0.815429 | 9.286777e-52 | 6.401263e-49 |
| MsG0180005361.01 | MsG0280011234.01 | 0.865676 | 4.966877e-65 | 1.629989e-61 |
| MsG0180005361.01 | MsG0380012073.01 | 0.868591 | 5.828244e-66 | 2.119946e-62 |
| MsG0180005361.01 | MsG0380015494.01 | 0.803960 | 2.715697e-49 | 1.383197e-46 |
| MsG0180005361.01 | MsG0380016389.01 | 0.819922 | 9.006436e-53 | 7.025227e-50 |
| MsG0180005361.01 | MsG0380016577.01 | 0.831400 | 1.705324e-55 | 1.848444e-52 |
| MsG0180005361.01 | MsG0380016733.01 | 0.878535 | 2.595304e-69 | 1.360139e-65 |
| MsG0180005361.01 | MsG0480018084.01 | 0.861797 | 7.967967e-64 | 2.281535e-60 |
| MsG0180005361.01 | MsG0480018252.01 | 0.820014 | 8.579494e-53 | 6.709555e-50 |
| MsG0180005361.01 | MsG0480018477.01 | 0.808303 | 3.309200e-50 | 1.885423e-47 |
| MsG0180005361.01 | MsG0480019632.01 | 0.807219 | 5.625649e-50 | 3.115613e-47 |
| MsG0180005361.01 | MsG0480020895.01 | 0.858674 | 7.005973e-63 | 1.802322e-59 |
| MsG0180005361.01 | MsG0480021159.01 | 0.822412 | 2.402242e-53 | 2.009292e-50 |
| MsG0180005361.01 | MsG0480022789.01 | 0.857436 | 1.634694e-62 | 4.034173e-59 |
| MsG0180005361.01 | MsG0480023149.01 | 0.858040 | 1.081915e-62 | 2.724545e-59 |
| MsG0180005361.01 | MsG0480023467.01 | 0.906236 | 1.840747e-80 | 3.087795e-76 |
| MsG0180005361.01 | MsG0480023559.01 | 0.812877 | 3.397618e-51 | 2.185323e-48 |
| MsG0180005361.01 | MsG0480023970.01 | 0.888000 | 8.696606e-73 | 6.618076e-69 |
| MsG0180005361.01 | MsG0580024369.01 | 0.866928 | 1.990937e-65 | 6.827963e-62 |
| MsG0180005361.01 | MsG0580025408.01 | 0.803636 | 3.172209e-49 | 1.602211e-46 |
| MsG0180005361.01 | MsG0580026157.01 | 0.821585 | 3.733264e-53 | 3.049597e-50 |
| MsG0180005361.01 | MsG0580027043.01 | 0.812133 | 4.941652e-51 | 3.116216e-48 |
| MsG0180005361.01 | MsG0580029132.01 | 0.852432 | 4.634682e-61 | 9.682507e-58 |
| MsG0180005361.01 | MsG0580029702.01 | 0.845491 | 3.928882e-59 | 6.558451e-56 |
| MsG0180005361.01 | MsG0580029703.01 | 0.853104 | 2.978043e-61 | 6.362166e-58 |
| MsG0180005361.01 | MsG0580030073.01 | 0.802400 | 5.712422e-49 | 2.795607e-46 |
| MsG0180005361.01 | MsG0680030408.01 | 0.813973 | 1.951383e-51 | 1.292922e-48 |
| MsG0180005361.01 | MsG0680031763.01 | 0.856297 | 3.538165e-62 | 8.404291e-59 |
| MsG0180005361.01 | MsG0680032770.01 | 0.837239 | 5.844460e-57 | 7.544967e-54 |
| MsG0180005361.01 | MsG0680035848.01 | 0.845830 | 3.179569e-59 | 5.366798e-56 |
| MsG0180005361.01 | MsG0780036822.01 | 0.836046 | 1.176754e-56 | 1.465610e-53 |
| MsG0180005361.01 | MsG0780038587.01 | 0.848534 | 5.765589e-60 | 1.061372e-56 |
| MsG0180005361.01 | MsG0780040338.01 | 0.806001 | 1.016846e-49 | 5.458214e-47 |
| MsG0180005361.01 | MsG0780040782.01 | 0.815103 | 1.097395e-51 | 7.496287e-49 |
| MsG0180005361.01 | MsG0780041147.01 | 0.884967 | 1.218668e-71 | 8.211919e-68 |
| MsG0180005361.01 | MsG0780041332.01 | 0.853059 | 3.068393e-61 | 6.545229e-58 |
| MsG0180005361.01 | MsG0880042125.01 | 0.874840 | 4.929626e-68 | 2.253153e-64 |
| MsG0180005361.01 | MsG0880042688.01 | 0.823744 | 1.174367e-53 | 1.020090e-50 |
| MsG0180005361.01 | MsG0880042860.01 | 0.819777 | 9.719895e-53 | 7.551106e-50 |
| MsG0180005361.01 | MsG0880043517.01 | 0.860082 | 2.646581e-63 | 7.147358e-60 |
| MsG0180005361.01 | MsG0880043770.01 | 0.831988 | 1.221203e-55 | 1.347081e-52 |
| MsG0180005361.01 | MsG0880045072.01 | 0.841257 | 5.303263e-58 | 7.747660e-55 |
| MsG0180005361.01 | MsG0880046177.01 | 0.809568 | 1.774742e-50 | 1.045630e-47 |
| MsG0180005361.01 | MsG0880046444.01 | 0.874937 | 4.568548e-68 | 2.095119e-64 |
| MsG0180005361.01 | MsG0880047082.01 | 0.888624 | 5.006838e-73 | 3.908354e-69 |
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0180005366.01 | MsG0180005361.01 | PPI |
| MsG0780039623.01 | MsG0180005361.01 | PPI |
| MsG0180001832.01 | MsG0180005361.01 | PPI |
| MsG0480023627.01 | MsG0180005361.01 | PPI |
| MsG0480023627.01 | MsG0180005361.01 | PPI |
| MsG0180003897.01 | MsG0180005361.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180005361.01.T01 | MTR_1g098170 | 100.000 | 152 | 0 | 0 | 1 | 152 | 1 | 152 | 6.74e-112 | 314 |
| MsG0180005361.01.T01 | MTR_1g098220 | 100.000 | 152 | 0 | 0 | 1 | 152 | 1 | 152 | 6.74e-112 | 314 |
| MsG0180005361.01.T01 | MTR_6g043210 | 98.684 | 152 | 2 | 0 | 1 | 152 | 1 | 152 | 6.99e-111 | 311 |
| MsG0180005361.01.T01 | MTR_1g492710 | 97.945 | 146 | 3 | 0 | 1 | 146 | 794 | 939 | 1.26e-97 | 303 |
| MsG0180005361.01.T01 | MTR_1g098220 | 99.160 | 119 | 1 | 0 | 1 | 119 | 1 | 119 | 2.82e-84 | 243 |
| MsG0180005361.01.T01 | MTR_5g027650 | 95.098 | 102 | 5 | 0 | 39 | 140 | 11 | 112 | 8.25e-69 | 203 |
| MsG0180005361.01.T01 | MTR_5g027580 | 93.137 | 102 | 7 | 0 | 39 | 140 | 48 | 149 | 7.37e-68 | 202 |
| MsG0180005361.01.T01 | MTR_5g027670 | 94.382 | 89 | 5 | 0 | 52 | 140 | 1 | 89 | 2.90e-58 | 176 |
| MsG0180005361.01.T01 | MTR_5g027615 | 94.382 | 89 | 5 | 0 | 52 | 140 | 1 | 89 | 7.28e-58 | 175 |
| MsG0180005361.01.T01 | MTR_5g027605 | 94.382 | 89 | 5 | 0 | 52 | 140 | 1 | 89 | 7.28e-58 | 175 |
| MsG0180005361.01.T01 | MTR_5g027640 | 94.382 | 89 | 5 | 0 | 52 | 140 | 1 | 89 | 7.28e-58 | 175 |
| MsG0180005361.01.T01 | MTR_5g027600 | 94.382 | 89 | 5 | 0 | 52 | 140 | 1 | 89 | 7.28e-58 | 175 |
| MsG0180005361.01.T01 | MTR_1005s0010 | 94.186 | 86 | 5 | 0 | 55 | 140 | 2 | 87 | 2.60e-56 | 171 |
| MsG0180005361.01.T01 | MTR_4g015960 | 70.270 | 74 | 15 | 2 | 68 | 137 | 10 | 80 | 2.40e-27 | 106 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180005361.01.T01 | AT4G09800 | 92.763 | 152 | 11 | 0 | 1 | 152 | 1 | 152 | 1.96e-105 | 298 |
| MsG0180005361.01.T01 | AT1G34030 | 92.763 | 152 | 11 | 0 | 1 | 152 | 1 | 152 | 1.96e-105 | 298 |
| MsG0180005361.01.T01 | AT1G22780 | 92.763 | 152 | 11 | 0 | 1 | 152 | 1 | 152 | 1.96e-105 | 298 |
Find 52 sgRNAs with CRISPR-Local
Find 123 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATGAAGTTGAGAGATGATT+TGG | 0.279609 | 1:+90847497 | MsG0180005361.01.T01:CDS |
| CAACTTCATGTCGAGTTGAT+TGG | 0.309472 | 1:-90847484 | None:intergenic |
| CTTAAGGCTGTATGTCGCTC+TGG | 0.322517 | 1:-90846880 | None:intergenic |
| CGTCCGCAGTTAGGTTAAAA+TGG | 0.345502 | 1:+90846933 | MsG0180005361.01.T01:exon |
| TTAAGCGTGATGTACTGTTT+TGG | 0.369558 | 1:+90848593 | MsG0180005361.01.T01:exon |
| ACCGGGGTTTGAGGCACTAC+TGG | 0.376368 | 1:+90848496 | MsG0180005361.01.T01:CDS |
| TCCCCTGCGGCCTGTAGTCT+TGG | 0.394682 | 1:-90848544 | None:intergenic |
| CCAACACCATTCAACTAATC+AGG | 0.407303 | 1:-90848737 | None:intergenic |
| TTTCATATACCGAGTTTGTA+TGG | 0.407920 | 1:+90848659 | MsG0180005361.01.T01:three_prime_UTR |
| CCGGGGTTTGAGGCACTACT+GGG | 0.411270 | 1:+90848497 | MsG0180005361.01.T01:CDS |
| AAAATCCTCCGTCCGCAGTT+AGG | 0.418193 | 1:+90846924 | MsG0180005361.01.T01:five_prime_UTR |
| TTCTGTTATGCAGTAATCAC+CGG | 0.438670 | 1:+90848478 | MsG0180005361.01.T01:intron |
| TACTGGGGCCTTCGTGTTCG+TGG | 0.449083 | 1:+90848513 | MsG0180005361.01.T01:CDS |
| GTGTTGAACACAAATGTTGA+TGG | 0.456259 | 1:+90847074 | MsG0180005361.01.T01:CDS |
| TGATTGAGGTCATTGCGAAC+TGG | 0.463060 | 1:-90847109 | None:intergenic |
| AGAGGGGTAATTGCCGCTTA+AGG | 0.471260 | 1:-90846896 | None:intergenic |
| GTTCGCAATGACCTCAATCA+AGG | 0.484324 | 1:+90847112 | MsG0180005361.01.T01:CDS |
| CAAGGATGGCAAATTCTCTC+AGG | 0.484690 | 1:+90847455 | MsG0180005361.01.T01:CDS |
| ATGACCTCAATCAAGGGTAT+TGG | 0.493197 | 1:+90847119 | MsG0180005361.01.T01:CDS |
| GTCAATTCAAGGTTCCAGAT+TGG | 0.495981 | 1:+90847409 | MsG0180005361.01.T01:CDS |
| CAAGTGCCTGATTAGTTGAA+TGG | 0.501343 | 1:+90848731 | MsG0180005361.01.T01:three_prime_UTR |
| CGCTAACATCTGCTGTAAGA+AGG | 0.503592 | 1:+90847151 | MsG0180005361.01.T01:CDS |
| TGCGAATCCTCGTCAATTCA+AGG | 0.503849 | 1:+90847398 | MsG0180005361.01.T01:CDS |
| CCCAGTAGTGCCTCAAACCC+CGG | 0.505879 | 1:-90848497 | None:intergenic |
| TGGAGAGACTCAAGAAGATC+CGG | 0.512286 | 1:+90847517 | MsG0180005361.01.T01:CDS |
| TTAAGGCTGTATGTCGCTCT+GGG | 0.524110 | 1:-90846879 | None:intergenic |
| GAACAGAAAGAAGGATTACA+AGG | 0.525479 | 1:+90847437 | MsG0180005361.01.T01:CDS |
| GCAGTAATCACCGGGGTTTG+AGG | 0.529690 | 1:+90848487 | MsG0180005361.01.T01:intron |
| TGATGTGTTATAGTCTTTGG+TGG | 0.546379 | 1:+90847022 | MsG0180005361.01.T01:intron |
| CCTGATTAGTTGAATGGTGT+TGG | 0.562322 | 1:+90848737 | MsG0180005361.01.T01:three_prime_UTR |
| AGAAAGAAGGATTACAAGGA+TGG | 0.565673 | 1:+90847441 | MsG0180005361.01.T01:CDS |
| GGTCAGCATACCAAGACTAC+AGG | 0.569467 | 1:+90848534 | MsG0180005361.01.T01:CDS |
| TACCAAGACTACAGGCCGCA+GGG | 0.580402 | 1:+90848542 | MsG0180005361.01.T01:CDS |
| TGAATTGAGTGCCGCAGAGT+TGG | 0.583506 | 1:+90847356 | MsG0180005361.01.T01:CDS |
| CCTACCAATACCCTTGATTG+AGG | 0.590405 | 1:-90847123 | None:intergenic |
| ATACCAAGACTACAGGCCGC+AGG | 0.594524 | 1:+90848541 | MsG0180005361.01.T01:CDS |
| TCTGTTATGCAGTAATCACC+GGG | 0.594587 | 1:+90848479 | MsG0180005361.01.T01:intron |
| GGCCGCAGGGGAAAGACTGT+TGG | 0.608087 | 1:+90848555 | MsG0180005361.01.T01:CDS |
| GAGCGACATACAGCCTTAAG+CGG | 0.620202 | 1:+90846883 | MsG0180005361.01.T01:five_prime_UTR |
| GTTGGATAATATTATGACAG+TGG | 0.620536 | 1:+90847374 | MsG0180005361.01.T01:CDS |
| TTCGCAATGACCTCAATCAA+GGG | 0.622158 | 1:+90847113 | MsG0180005361.01.T01:CDS |
| CCTCAATCAAGGGTATTGGT+AGG | 0.631523 | 1:+90847123 | MsG0180005361.01.T01:CDS |
| CCTCTTGTTCATGTCAACAT+CGG | 0.651019 | 1:-90847174 | None:intergenic |
| TTTAACCTAACTGCGGACGG+AGG | 0.653943 | 1:-90846929 | None:intergenic |
| ACCAAGACTACAGGCCGCAG+GGG | 0.654823 | 1:+90848543 | MsG0180005361.01.T01:CDS |
| CCGATGTTGACATGAACAAG+AGG | 0.658386 | 1:+90847174 | MsG0180005361.01.T01:CDS |
| TCTGGAACCTTGAATTGACG+AGG | 0.669518 | 1:-90847405 | None:intergenic |
| CGGGGTTTGAGGCACTACTG+GGG | 0.682879 | 1:+90848498 | MsG0180005361.01.T01:CDS |
| CATAATATTATCCAACTCTG+CGG | 0.698001 | 1:-90847367 | None:intergenic |
| CTGTTATGCAGTAATCACCG+GGG | 0.730953 | 1:+90848480 | MsG0180005361.01.T01:intron |
| TATGCTGACCACGAACACGA+AGG | 0.739225 | 1:-90848521 | None:intergenic |
| CACCAACAGTCTTTCCCCTG+CGG | 0.740988 | 1:-90848557 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTCAATTCAATAATATAA+TGG | + | Chr1:90848401-90848420 | MsG0180005361.01.T01:intron | 10.0% |
| !!! | ATTTTTGTTGTTAAAATTAA+TGG | + | Chr1:90847237-90847256 | MsG0180005361.01.T01:intron | 10.0% |
| !!! | TTTTTGTTGTTAAAATTAAT+GGG | + | Chr1:90847238-90847257 | MsG0180005361.01.T01:intron | 10.0% |
| !! | TTTGAGTAGTAAAAAAATAA+TGG | - | Chr1:90848327-90848346 | None:intergenic | 15.0% |
| !! | AATACATAGTAAAAAATGCA+AGG | - | Chr1:90848032-90848051 | None:intergenic | 20.0% |
| !! | AATTAAAAACCATACAAACT+CGG | - | Chr1:90848671-90848690 | None:intergenic | 20.0% |
| !! | AGTTTAAATAAATCCTATCT+AGG | + | Chr1:90848297-90848316 | MsG0180005361.01.T01:intron | 20.0% |
| !! | ATCATCTTTATAGTTAACAA+AGG | - | Chr1:90847580-90847599 | None:intergenic | 20.0% |
| !! | ATGATATTCATGTTGATATA+GGG | + | Chr1:90848069-90848088 | MsG0180005361.01.T01:intron | 20.0% |
| !! | TAAGATGAAAACAGTTTATA+TGG | + | Chr1:90848217-90848236 | MsG0180005361.01.T01:intron | 20.0% |
| !! | TATGATATTCATGTTGATAT+AGG | + | Chr1:90848068-90848087 | MsG0180005361.01.T01:intron | 20.0% |
| !! | TTCTGTATTCAATAATACAA+TGG | + | Chr1:90848347-90848366 | MsG0180005361.01.T01:intron | 20.0% |
| !!! | AAATGACTGATTTATAAAAG+TGG | - | Chr1:90847221-90847240 | None:intergenic | 20.0% |
| !!! | AATAATATAATGGATGTATG+TGG | + | Chr1:90848411-90848430 | MsG0180005361.01.T01:intron | 20.0% |
| !!! | AATGACTGATTTATAAAAGT+GGG | - | Chr1:90847220-90847239 | None:intergenic | 20.0% |
| !!! | CAATAAAATTTTAGACTGTT+TGG | + | Chr1:90848119-90848138 | MsG0180005361.01.T01:intron | 20.0% |
| !!! | TTTGATATTGTTGTTGAAAT+GGG | + | Chr1:90847301-90847320 | MsG0180005361.01.T01:intron | 20.0% |
| !!! | TTTGATTTTTAAATGTGAGA+TGG | - | Chr1:90847279-90847298 | None:intergenic | 20.0% |
| !!! | TTTGTTGTTGGATTTTTTTA+GGG | + | Chr1:90847329-90847348 | MsG0180005361.01.T01:intron | 20.0% |
| !!! | TTTTGATATTGTTGTTGAAA+TGG | + | Chr1:90847300-90847319 | MsG0180005361.01.T01:intron | 20.0% |
| !!! | TTTTGTTGTTGGATTTTTTT+AGG | + | Chr1:90847328-90847347 | MsG0180005361.01.T01:intron | 20.0% |
| ! | AATAATACAATGGATGTATG+TGG | + | Chr1:90848357-90848376 | MsG0180005361.01.T01:intron | 25.0% |
| ! | ACAGTTTAATTAAGCACTTA+TGG | + | Chr1:90848146-90848165 | MsG0180005361.01.T01:intron | 25.0% |
| ! | GAAAACAAAATACAAGTCAT+TGG | - | Chr1:90847981-90848000 | None:intergenic | 25.0% |
| !!! | ACTTGTATTTTGTTTTCTCT+TGG | + | Chr1:90847984-90848003 | MsG0180005361.01.T01:intron | 25.0% |
| !!! | TGGTTTTTAATTGAATGCAT+TGG | + | Chr1:90848679-90848698 | MsG0180005361.01.T01:three_prime_UTR | 25.0% |
| AATCAAATGTTTCCCATAAG+CGG | + | Chr1:90847911-90847930 | MsG0180005361.01.T01:intron | 30.0% | |
| ACATTTCAACACTACTATGT+AGG | + | Chr1:90847637-90847656 | MsG0180005361.01.T01:intron | 30.0% | |
| AGATGTAGTAGTAAGATGAT+AGG | + | Chr1:90847673-90847692 | MsG0180005361.01.T01:intron | 30.0% | |
| AGTGTTTGAAAATAGAACAG+TGG | + | Chr1:90847864-90847883 | MsG0180005361.01.T01:intron | 30.0% | |
| CATAATATTATCCAACTCTG+CGG | - | Chr1:90847370-90847389 | None:intergenic | 30.0% | |
| GAAAACAGTTTATATGGACA+TGG | + | Chr1:90848223-90848242 | MsG0180005361.01.T01:intron | 30.0% | |
| GTGTTTGAAAATAGAACAGT+GGG | + | Chr1:90847865-90847884 | MsG0180005361.01.T01:intron | 30.0% | |
| GTTGGATAATATTATGACAG+TGG | + | Chr1:90847374-90847393 | MsG0180005361.01.T01:CDS | 30.0% | |
| TTGTGATGTGTTATAGTCTT+TGG | + | Chr1:90847019-90847038 | MsG0180005361.01.T01:intron | 30.0% | |
| TTTCATATACCGAGTTTGTA+TGG | + | Chr1:90848659-90848678 | MsG0180005361.01.T01:three_prime_UTR | 30.0% | |
| TTTCTGTTCAAAAACCAATC+TGG | - | Chr1:90847426-90847445 | None:intergenic | 30.0% | |
| ! | TTGGAGATTAGATGATTTTG+AGG | + | Chr1:90848612-90848631 | MsG0180005361.01.T01:three_prime_UTR | 30.0% |
| ! | TTGGCAATTTCAATTTTGTC+TGG | + | Chr1:90848698-90848717 | MsG0180005361.01.T01:three_prime_UTR | 30.0% |
| !! | ATACCATTTTAACCTAACTG+CGG | - | Chr1:90846939-90846958 | None:intergenic | 30.0% |
| !! | TTGGTTTTTGAACAGAAAGA+AGG | + | Chr1:90847428-90847447 | MsG0180005361.01.T01:CDS | 30.0% |
| !!! | AAATGGGTTGTTTTTGTTGT+TGG | + | Chr1:90847317-90847336 | MsG0180005361.01.T01:intron | 30.0% |
| !!! | CTCAGTTGGTTTTTTAGTAT+AGG | + | Chr1:90847605-90847624 | MsG0180005361.01.T01:intron | 30.0% |
| AAAGATGATTCTCACTCAGT+TGG | + | Chr1:90847591-90847610 | MsG0180005361.01.T01:intron | 35.0% | |
| AAATAATGGCATGCCTAGAT+AGG | - | Chr1:90848313-90848332 | None:intergenic | 35.0% | |
| ACAATGAAGTAGCATCTTAC+CGG | - | Chr1:90847539-90847558 | None:intergenic | 35.0% | |
| ACAGAACGAGAATTCACTAT+TGG | + | Chr1:90847760-90847779 | MsG0180005361.01.T01:intron | 35.0% | |
| ACTAATAACCATTGCTTCGA+TGG | + | Chr1:90847696-90847715 | MsG0180005361.01.T01:intron | 35.0% | |
| AGAAAGAAGGATTACAAGGA+TGG | + | Chr1:90847441-90847460 | MsG0180005361.01.T01:CDS | 35.0% | |
| ATGGATGTATGTGGAGAAAT+TGG | + | Chr1:90848420-90848439 | MsG0180005361.01.T01:intron | 35.0% | |
| ATTTGCATAAGCAGACTGTT+TGG | - | Chr1:90848272-90848291 | None:intergenic | 35.0% | |
| CATGAAGTTGAGAGATGATT+TGG | + | Chr1:90847497-90847516 | MsG0180005361.01.T01:CDS | 35.0% | |
| CTGTTATTCAAACACTATCG+AGG | - | Chr1:90847744-90847763 | None:intergenic | 35.0% | |
| GAACAGAAAGAAGGATTACA+AGG | + | Chr1:90847437-90847456 | MsG0180005361.01.T01:CDS | 35.0% | |
| GAATTGGACCAAAAAGTAAC+TGG | + | Chr1:90847948-90847967 | MsG0180005361.01.T01:intron | 35.0% | |
| GTGATTACTGCATAACAGAA+AGG | - | Chr1:90848478-90848497 | None:intergenic | 35.0% | |
| GTGTTGAACACAAATGTTGA+TGG | + | Chr1:90847074-90847093 | MsG0180005361.01.T01:CDS | 35.0% | |
| TGATGTGTTATAGTCTTTGG+TGG | + | Chr1:90847022-90847041 | MsG0180005361.01.T01:intron | 35.0% | |
| TGGATGTATGTGGAGAAATT+GGG | + | Chr1:90848421-90848440 | MsG0180005361.01.T01:intron | 35.0% | |
| TTCTGTTATGCAGTAATCAC+CGG | + | Chr1:90848478-90848497 | MsG0180005361.01.T01:intron | 35.0% | |
| TTTGCATAAGCAGACTGTTT+GGG | - | Chr1:90848271-90848290 | None:intergenic | 35.0% | |
| ! | TTAAGCGTGATGTACTGTTT+TGG | + | Chr1:90848593-90848612 | MsG0180005361.01.T01:exon | 35.0% |
| !!! | GATAAGAGCCAGTTACTTTT+TGG | - | Chr1:90847959-90847978 | None:intergenic | 35.0% |
| !!! | TTGTTGGATTTTTTTAGGGC+TGG | + | Chr1:90847333-90847352 | MsG0180005361.01.T01:intron | 35.0% |
| ATAACCATTGCTTCGATGGT+TGG | + | Chr1:90847700-90847719 | MsG0180005361.01.T01:intron | 40.0% | |
| CCAACACCATTCAACTAATC+AGG | - | Chr1:90848740-90848759 | None:intergenic | 40.0% | |
| CCTCTTGTTCATGTCAACAT+CGG | - | Chr1:90847177-90847196 | None:intergenic | 40.0% | |
| GGAAATACGGGCAATAGAAT+TGG | + | Chr1:90847932-90847951 | MsG0180005361.01.T01:intron | 40.0% | |
| GTCAATTCAAGGTTCCAGAT+TGG | + | Chr1:90847409-90847428 | MsG0180005361.01.T01:CDS | 40.0% | |
| GTTTCCCATAAGCGGAAATA+CGG | + | Chr1:90847919-90847938 | MsG0180005361.01.T01:intron | 40.0% | |
| TATGTGGAGAAATTGGGCAT+TGG | + | Chr1:90848427-90848446 | MsG0180005361.01.T01:intron | 40.0% | |
| TCTGTTATGCAGTAATCACC+GGG | + | Chr1:90848479-90848498 | MsG0180005361.01.T01:intron | 40.0% | |
| TTCGCAATGACCTCAATCAA+GGG | + | Chr1:90847113-90847132 | MsG0180005361.01.T01:CDS | 40.0% | |
| TTGCATAAGCAGACTGTTTG+GGG | - | Chr1:90848270-90848289 | None:intergenic | 40.0% | |
| TTTCCCATAAGCGGAAATAC+GGG | + | Chr1:90847920-90847939 | MsG0180005361.01.T01:intron | 40.0% | |
| ! | ACGGAGGATTTTGTTGAAGA+GGG | - | Chr1:90846916-90846935 | None:intergenic | 40.0% |
| ! | ATGACCTCAATCAAGGGTAT+TGG | + | Chr1:90847119-90847138 | MsG0180005361.01.T01:CDS | 40.0% |
| ! | CAAGTGCCTGATTAGTTGAA+TGG | + | Chr1:90848731-90848750 | MsG0180005361.01.T01:three_prime_UTR | 40.0% |
| ! | CCTGATTAGTTGAATGGTGT+TGG | + | Chr1:90848737-90848756 | MsG0180005361.01.T01:three_prime_UTR | 40.0% |
| !! | CAACTTCATGTCGAGTTGAT+TGG | - | Chr1:90847487-90847506 | None:intergenic | 40.0% |
| !! | CATTTTAACCTAACTGCGGA+CGG | - | Chr1:90846935-90846954 | None:intergenic | 40.0% |
| ACACGATCAAAGCAATGCAG+TGG | - | Chr1:90847822-90847841 | None:intergenic | 45.0% | |
| ATTGCCCGTATTTCCGCTTA+TGG | - | Chr1:90847927-90847946 | None:intergenic | 45.0% | |
| CAAGGATGGCAAATTCTCTC+AGG | + | Chr1:90847455-90847474 | MsG0180005361.01.T01:CDS | 45.0% | |
| CCGATGTTGACATGAACAAG+AGG | + | Chr1:90847174-90847193 | MsG0180005361.01.T01:CDS | 45.0% | |
| CCTACCAATACCCTTGATTG+AGG | - | Chr1:90847126-90847145 | None:intergenic | 45.0% | |
| CGCTAACATCTGCTGTAAGA+AGG | + | Chr1:90847151-90847170 | MsG0180005361.01.T01:CDS | 45.0% | |
| CGTCCGCAGTTAGGTTAAAA+TGG | + | Chr1:90846933-90846952 | MsG0180005361.01.T01:exon | 45.0% | |
| CTGTTATGCAGTAATCACCG+GGG | + | Chr1:90848480-90848499 | MsG0180005361.01.T01:intron | 45.0% | |
| GTTCGCAATGACCTCAATCA+AGG | + | Chr1:90847112-90847131 | MsG0180005361.01.T01:CDS | 45.0% | |
| TGATTGAGGTCATTGCGAAC+TGG | - | Chr1:90847112-90847131 | None:intergenic | 45.0% | |
| TGCGAATCCTCGTCAATTCA+AGG | + | Chr1:90847398-90847417 | MsG0180005361.01.T01:CDS | 45.0% | |
| TGGAGAGACTCAAGAAGATC+CGG | + | Chr1:90847517-90847536 | MsG0180005361.01.T01:CDS | 45.0% | |
| TTAAGGCTGTATGTCGCTCT+GGG | - | Chr1:90846882-90846901 | None:intergenic | 45.0% | |
| TTGCCCGTATTTCCGCTTAT+GGG | - | Chr1:90847926-90847945 | None:intergenic | 45.0% | |
| ! | CGGAGGATTTTGTTGAAGAG+GGG | - | Chr1:90846915-90846934 | None:intergenic | 45.0% |
| ! | GACGGAGGATTTTGTTGAAG+AGG | - | Chr1:90846917-90846936 | None:intergenic | 45.0% |
| ! | TCTGGAACCTTGAATTGACG+AGG | - | Chr1:90847408-90847427 | None:intergenic | 45.0% |
| !! | CCTCAATCAAGGGTATTGGT+AGG | + | Chr1:90847123-90847142 | MsG0180005361.01.T01:CDS | 45.0% |
| AAAATCCTCCGTCCGCAGTT+AGG | + | Chr1:90846924-90846943 | MsG0180005361.01.T01:five_prime_UTR | 50.0% | |
| AGCACCAACCATCGAAGCAA+TGG | - | Chr1:90847707-90847726 | None:intergenic | 50.0% | |
| CGATCAAAGCAATGCAGTGG+TGG | - | Chr1:90847819-90847838 | None:intergenic | 50.0% | |
| CTTAAGGCTGTATGTCGCTC+TGG | - | Chr1:90846883-90846902 | None:intergenic | 50.0% | |
| GAGCGACATACAGCCTTAAG+CGG | + | Chr1:90846883-90846902 | MsG0180005361.01.T01:five_prime_UTR | 50.0% | |
| GGTCAGCATACCAAGACTAC+AGG | + | Chr1:90848534-90848553 | MsG0180005361.01.T01:CDS | 50.0% | |
| TATGCTGACCACGAACACGA+AGG | - | Chr1:90848524-90848543 | None:intergenic | 50.0% | |
| TTTAACCTAACTGCGGACGG+AGG | - | Chr1:90846932-90846951 | None:intergenic | 50.0% | |
| ! | AGAGGGGTAATTGCCGCTTA+AGG | - | Chr1:90846899-90846918 | None:intergenic | 50.0% |
| ! | TGAATTGAGTGCCGCAGAGT+TGG | + | Chr1:90847356-90847375 | MsG0180005361.01.T01:CDS | 50.0% |
| !! | TGGAGAAATTGGGCATTGGC+TGG | + | Chr1:90848431-90848450 | MsG0180005361.01.T01:intron | 50.0% |
| ATACCAAGACTACAGGCCGC+AGG | + | Chr1:90848541-90848560 | MsG0180005361.01.T01:CDS | 55.0% | |
| CACCAACAGTCTTTCCCCTG+CGG | - | Chr1:90848560-90848579 | None:intergenic | 55.0% | |
| GCAGTAATCACCGGGGTTTG+AGG | + | Chr1:90848487-90848506 | MsG0180005361.01.T01:intron | 55.0% | |
| TACCAAGACTACAGGCCGCA+GGG | + | Chr1:90848542-90848561 | MsG0180005361.01.T01:CDS | 55.0% | |
| ! | ATGCAGTGGTGGTGCATCAG+CGG | - | Chr1:90847808-90847827 | None:intergenic | 55.0% |
| ACCAAGACTACAGGCCGCAG+GGG | + | Chr1:90848543-90848562 | MsG0180005361.01.T01:CDS | 60.0% | |
| CCCAGTAGTGCCTCAAACCC+CGG | - | Chr1:90848500-90848519 | None:intergenic | 60.0% | |
| TACTGGGGCCTTCGTGTTCG+TGG | + | Chr1:90848513-90848532 | MsG0180005361.01.T01:CDS | 60.0% | |
| ! | ACCGGGGTTTGAGGCACTAC+TGG | + | Chr1:90848496-90848515 | MsG0180005361.01.T01:CDS | 60.0% |
| ! | CCGGGGTTTGAGGCACTACT+GGG | + | Chr1:90848497-90848516 | MsG0180005361.01.T01:CDS | 60.0% |
| ! | CGGGGTTTGAGGCACTACTG+GGG | + | Chr1:90848498-90848517 | MsG0180005361.01.T01:CDS | 60.0% |
| GGCCGCAGGGGAAAGACTGT+TGG | + | Chr1:90848555-90848574 | MsG0180005361.01.T01:CDS | 65.0% | |
| TCCCCTGCGGCCTGTAGTCT+TGG | - | Chr1:90848547-90848566 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 90846868 | 90848776 | 90846868 | ID=MsG0180005361.01;Name=MsG0180005361.01 |
| Chr1 | mRNA | 90846868 | 90848776 | 90846868 | ID=MsG0180005361.01.T01;Parent=MsG0180005361.01;Name=MsG0180005361.01.T01;_AED=0.49;_eAED=0.49;_QI=84|1|1|1|0.66|0.5|4|180|152 |
| Chr1 | exon | 90846868 | 90846954 | 90846868 | ID=MsG0180005361.01.T01:exon:14710;Parent=MsG0180005361.01.T01 |
| Chr1 | exon | 90847035 | 90847195 | 90847035 | ID=MsG0180005361.01.T01:exon:14711;Parent=MsG0180005361.01.T01 |
| Chr1 | exon | 90847350 | 90847538 | 90847350 | ID=MsG0180005361.01.T01:exon:14712;Parent=MsG0180005361.01.T01 |
| Chr1 | exon | 90848491 | 90848776 | 90848491 | ID=MsG0180005361.01.T01:exon:14713;Parent=MsG0180005361.01.T01 |
| Chr1 | five_prime_UTR | 90846868 | 90846951 | 90846868 | ID=MsG0180005361.01.T01:five_prime_utr;Parent=MsG0180005361.01.T01 |
| Chr1 | CDS | 90846952 | 90846954 | 90846952 | ID=MsG0180005361.01.T01:cds;Parent=MsG0180005361.01.T01 |
| Chr1 | CDS | 90847035 | 90847195 | 90847035 | ID=MsG0180005361.01.T01:cds;Parent=MsG0180005361.01.T01 |
| Chr1 | CDS | 90847350 | 90847538 | 90847350 | ID=MsG0180005361.01.T01:cds;Parent=MsG0180005361.01.T01 |
| Chr1 | CDS | 90848491 | 90848596 | 90848491 | ID=MsG0180005361.01.T01:cds;Parent=MsG0180005361.01.T01 |
| Chr1 | three_prime_UTR | 90848597 | 90848776 | 90848597 | ID=MsG0180005361.01.T01:three_prime_utr;Parent=MsG0180005361.01.T01 |
| Gene Sequence |
| Protein sequence |
