AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0080048431.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080048431.01.T01 MTR_5g078250 55.094 481 177 6 1 444 1 479 0.0 525
MsG0080048431.01.T01 MTR_8g062030 55.452 431 162 2 1 401 1 431 4.69e-166 484
MsG0080048431.01.T01 MTR_1g075850 46.850 508 174 10 1 473 1 447 1.65e-149 440
MsG0080048431.01.T01 MTR_4g046077 48.947 380 135 8 103 465 1 338 2.73e-102 314
MsG0080048431.01.T01 MTR_6g051890 45.317 331 122 5 1 331 5 276 1.25e-88 279
MsG0080048431.01.T01 MTR_2g048560 33.556 450 267 4 1 418 1 450 1.66e-86 278
MsG0080048431.01.T01 MTR_4g036240 34.884 430 244 6 1 398 1 426 1.27e-84 273
MsG0080048431.01.T01 MTR_0042s0170 40.659 455 175 13 103 534 1 383 2.59e-84 268
MsG0080048431.01.T01 MTR_8g479260 31.294 425 256 5 8 398 10 432 2.80e-73 243
MsG0080048431.01.T01 MTR_2g008650 31.294 425 256 5 8 398 10 432 5.71e-73 243
MsG0080048431.01.T01 MTR_6g052340 53.036 247 74 5 1 211 1 241 6.43e-73 245
MsG0080048431.01.T01 MTR_3g056270 31.936 501 279 14 29 488 186 665 5.63e-70 238
MsG0080048431.01.T01 MTR_3g056270 37.500 192 109 1 1 181 1 192 5.02e-36 143
MsG0080048431.01.T01 MTR_8g059025 69.565 138 42 0 1 138 1 138 6.15e-67 213
MsG0080048431.01.T01 MTR_4g036240 34.000 350 195 6 81 398 1 346 1.98e-61 210
MsG0080048431.01.T01 MTR_8g467450 64.029 139 50 0 1 139 1 139 1.12e-58 192
MsG0080048431.01.T01 MTR_3g081610 51.596 188 61 3 211 398 10 167 1.63e-58 194
MsG0080048431.01.T01 MTR_2g048550 28.670 436 266 6 1 398 1 429 1.66e-49 178
MsG0080048431.01.T01 MTR_4g036240 32.753 287 157 6 144 398 1 283 2.58e-46 168
MsG0080048431.01.T01 MTR_8g062060 28.571 420 257 7 13 398 13 423 1.12e-45 169
MsG0080048431.01.T01 MTR_1g094230 33.447 293 167 5 1 267 1 291 1.17e-41 152
MsG0080048431.01.T01 MTR_8g463820 34.815 270 154 4 1 250 1 268 4.35e-41 150
MsG0080048431.01.T01 MTR_6g039240 33.333 291 166 5 1 265 1 289 1.08e-40 149
MsG0080048431.01.T01 MTR_4g134870 45.395 152 76 1 211 362 117 261 1.98e-39 149
MsG0080048431.01.T01 MTR_6g445520 29.492 295 169 3 142 398 1 294 3.91e-39 148
MsG0080048431.01.T01 MTR_3g056240 37.696 191 108 1 1 180 1 191 4.30e-38 143
MsG0080048431.01.T01 MTR_7g089660 36.652 221 131 4 1 219 1 214 1.80e-37 139
MsG0080048431.01.T01 MTR_1g105785 24.169 451 291 11 11 426 11 445 3.26e-37 145
MsG0080048431.01.T01 MTR_8g088810 31.126 302 170 3 1 264 1 302 2.67e-36 137
MsG0080048431.01.T01 MTR_2g054710 32.258 217 134 2 8 213 10 224 4.85e-36 135
MsG0080048431.01.T01 MTR_7g110100 24.882 422 280 7 11 398 11 429 3.20e-35 139
MsG0080048431.01.T01 MTR_3g095950 40.491 163 97 0 1 163 1 163 3.07e-34 127
MsG0080048431.01.T01 MTR_1g036740 41.104 163 96 0 1 163 1 163 4.55e-34 127
MsG0080048431.01.T01 MTR_8g096680 41.104 163 96 0 1 163 1 163 4.55e-34 127
MsG0080048431.01.T01 MTR_5g055160 32.411 253 144 2 1 253 1 226 8.66e-34 129
MsG0080048431.01.T01 MTR_4g471610 40.491 163 97 0 1 163 1 163 9.29e-34 126
MsG0080048431.01.T01 MTR_3g078440 40.491 163 97 0 1 163 1 163 9.29e-34 126
MsG0080048431.01.T01 MTR_8g036090 40.491 163 97 0 1 163 1 163 9.29e-34 126
MsG0080048431.01.T01 MTR_8g469510 63.218 87 32 0 20 106 3 89 3.62e-33 122
MsG0080048431.01.T01 MTR_3g116750 41.667 156 91 0 8 163 8 163 4.07e-33 124
MsG0080048431.01.T01 MTR_7g093810 39.877 163 98 0 1 163 1 163 4.69e-33 124
MsG0080048431.01.T01 MTR_2g062200 47.403 154 67 4 44 185 1 152 6.31e-33 124
MsG0080048431.01.T01 MTR_1g050500 27.248 367 213 9 78 408 2 350 2.74e-32 130
MsG0080048431.01.T01 MTR_6g069230 34.513 226 116 4 14 209 110 333 1.07e-31 126
MsG0080048431.01.T01 MTR_5g070620 67.532 77 25 0 2 78 27 103 2.17e-31 117
MsG0080048431.01.T01 MTR_4g028320 43.662 142 80 0 22 163 3 144 1.52e-30 117
MsG0080048431.01.T01 MTR_7g051400 23.598 428 300 12 11 426 11 423 2.77e-30 125
MsG0080048431.01.T01 MTR_5g085220 38.650 163 100 0 1 163 1 163 4.92e-30 116
MsG0080048431.01.T01 MTR_3g044760 27.907 301 182 5 1 272 1 295 2.61e-28 118
MsG0080048431.01.T01 MTR_6g033945 34.146 205 65 4 128 270 28 224 5.24e-27 109
MsG0080048431.01.T01 MTR_6g013455 30.739 257 165 4 1 250 1 251 6.38e-27 110
MsG0080048431.01.T01 MTR_5g056060 30.709 254 144 4 1 253 1 223 7.20e-26 107
MsG0080048431.01.T01 MTR_7g104000 29.412 272 155 5 1 265 1 242 9.86e-26 106
MsG0080048431.01.T01 MTR_2g032570 37.576 165 101 1 1 163 1 165 1.03e-25 104
MsG0080048431.01.T01 MTR_4g016120 43.478 115 65 0 49 163 40 154 6.43e-24 99.0
MsG0080048431.01.T01 MTR_6g465570 34.839 155 100 1 14 168 10 163 7.18e-24 99.0
MsG0080048431.01.T01 MTR_5g007120 32.579 221 123 2 50 269 19 214 8.08e-24 100
MsG0080048431.01.T01 MTR_2g058350 30.216 278 154 6 14 290 14 252 1.50e-23 103
MsG0080048431.01.T01 MTR_3g084550 42.623 122 70 0 42 163 1 122 1.59e-23 96.7
MsG0080048431.01.T01 MTR_1g072220 41.803 122 71 0 42 163 1 122 2.33e-23 96.3
MsG0080048431.01.T01 MTR_7g032985 59.420 69 28 0 100 168 1 69 1.80e-22 91.7
MsG0080048431.01.T01 MTR_8g461360 41.007 139 70 2 58 185 1 138 2.95e-22 95.9
MsG0080048431.01.T01 MTR_4g040040 33.099 142 90 2 260 398 3 142 1.13e-21 92.4
MsG0080048431.01.T01 MTR_2g099880 43.443 122 69 0 42 163 7 128 2.47e-21 90.5
MsG0080048431.01.T01 MTR_1g060700 35.057 174 51 2 103 214 1 174 6.31e-21 96.3
MsG0080048431.01.T01 MTR_1788s0010 36.923 130 82 0 10 139 10 139 9.25e-21 89.0
MsG0080048431.01.T01 MTR_7g117425 45.946 111 54 1 6 116 6 110 1.21e-20 92.0
MsG0080048431.01.T01 MTR_4g022520 42.478 113 65 0 51 163 11 123 2.78e-20 89.7
MsG0080048431.01.T01 MTR_6g051880 28.378 222 130 4 70 275 2 210 8.50e-20 92.4
MsG0080048431.01.T01 MTR_5g068430 33.117 154 96 1 1 154 1 147 3.14e-19 86.3
MsG0080048431.01.T01 MTR_5g032920 43.750 96 54 0 1 96 1 96 9.04e-19 82.0
MsG0080048431.01.T01 MTR_8g005940 25.664 226 166 2 14 239 14 237 5.16e-18 85.1
MsG0080048431.01.T01 MTR_7g451880 27.368 190 125 2 14 191 15 203 7.94e-18 85.1
MsG0080048431.01.T01 MTR_3g452170 22.254 346 226 8 11 320 11 349 1.32e-17 85.9
MsG0080048431.01.T01 MTR_4g058660 26.842 190 126 2 14 191 14 202 7.88e-17 82.0
MsG0080048431.01.T01 MTR_8g078450 37.086 151 78 3 75 213 2 147 1.77e-16 77.4
MsG0080048431.01.T01 MTR_1g082860 25.789 190 119 2 14 191 14 193 4.90e-16 79.0
MsG0080048431.01.T01 MTR_1g011490 22.481 258 158 3 14 239 14 261 7.71e-16 79.0
MsG0080048431.01.T01 MTR_8g465040 29.747 158 110 1 11 168 11 167 1.32e-15 75.1
MsG0080048431.01.T01 MTR_3g015660 25.263 190 129 2 14 191 14 202 1.74e-15 76.6
MsG0080048431.01.T01 MTR_4g032585 28.283 198 135 5 237 428 11 207 1.97e-15 77.4
MsG0080048431.01.T01 MTR_1g051235 26.994 163 109 3 11 168 11 168 3.73e-15 73.9
MsG0080048431.01.T01 MTR_4g032565 28.426 197 134 5 237 427 11 206 5.34e-15 76.3
MsG0080048431.01.T01 MTR_7g074180 25.389 193 131 2 11 191 11 202 5.83e-15 76.6
MsG0080048431.01.T01 MTR_1g091180 38.776 98 60 0 24 121 2 99 9.12e-15 71.2
MsG0080048431.01.T01 MTR_7g045450 24.082 245 165 5 11 236 11 253 9.16e-15 74.7
MsG0080048431.01.T01 MTR_6g073570 24.082 245 165 5 11 236 11 253 9.16e-15 74.7
MsG0080048431.01.T01 MTR_1g023370 25.263 190 129 2 14 191 14 202 1.35e-14 75.1
MsG0080048431.01.T01 MTR_5g030110 25.263 190 129 2 14 191 14 202 1.40e-14 75.5
MsG0080048431.01.T01 MTR_2g007410 25.263 190 129 2 14 191 14 202 1.40e-14 75.5
MsG0080048431.01.T01 MTR_7g024060 25.263 190 129 2 14 191 14 202 1.76e-14 75.1
MsG0080048431.01.T01 MTR_6g087820 25.263 190 129 2 14 191 14 202 1.76e-14 75.1
MsG0080048431.01.T01 MTR_5g081190 25.263 190 129 2 14 191 14 202 1.76e-14 75.1
MsG0080048431.01.T01 MTR_5g091480 25.263 190 129 2 14 191 14 202 1.76e-14 75.1
MsG0080048431.01.T01 MTR_5g056290 25.263 190 129 2 14 191 14 202 1.76e-14 75.1
MsG0080048431.01.T01 MTR_3g031190 25.263 190 129 2 14 191 14 202 1.76e-14 75.1
MsG0080048431.01.T01 MTR_2g005490 25.263 190 129 2 14 191 14 202 1.76e-14 75.1
MsG0080048431.01.T01 MTR_2g010570 25.263 190 129 2 14 191 14 202 1.76e-14 75.1
MsG0080048431.01.T01 MTR_3g032190 41.667 84 49 0 1 84 1 84 2.60e-14 69.7
MsG0080048431.01.T01 MTR_5g060920 43.038 79 45 0 6 84 8 86 2.61e-14 69.7
MsG0080048431.01.T01 MTR_0032s0020 35.135 111 72 0 13 123 13 123 2.05e-13 73.2
MsG0080048431.01.T01 MTR_0032s0020 29.870 154 91 3 238 391 173 309 9.29e-13 71.2
MsG0080048431.01.T01 MTR_8g446640 25.275 182 123 2 22 191 3 183 2.89e-13 71.2
MsG0080048431.01.T01 MTR_2g010270 22.093 258 161 4 22 239 3 260 2.91e-13 71.2
MsG0080048431.01.T01 MTR_1g096860 44.444 72 40 0 42 113 1 72 7.12e-13 64.3
MsG0080048431.01.T01 MTR_5g054640 36.735 98 62 0 24 121 2 99 1.16e-12 65.9
MsG0080048431.01.T01 MTR_2g450060 21.687 415 270 13 1 370 5 409 1.33e-12 70.9
MsG0080048431.01.T01 MTR_1g056650 43.056 72 41 0 42 113 1 72 3.33e-12 62.4
MsG0080048431.01.T01 MTR_5g004860 22.518 413 269 10 1 370 1 405 3.58e-12 69.3
MsG0080048431.01.T01 MTR_4g071730 31.757 148 77 4 127 253 9 153 4.31e-12 64.7
MsG0080048431.01.T01 MTR_0048s0080 21.933 269 161 9 137 371 2 255 1.12e-11 66.6
MsG0080048431.01.T01 MTR_5g045850 24.737 190 115 3 14 191 14 187 1.14e-11 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080048431.01.T01 AT1G52950 23.834 386 236 10 10 348 12 386 3.04e-28 119
MsG0080048431.01.T01 AT2G05642 22.593 509 331 14 19 479 19 512 3.11e-28 119

Find 173 sgRNAs with CRISPR-Local

Find 282 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAATCTCCCTCTGGGTTTA+TGG 0.130491 contig316end:+10739 MsG0080048431.01.T01:three_prime_UTR
CACCGCTGATTATGATTATT+TGG 0.171120 contig316end:+7909 MsG0080048431.01.T01:CDS
ATTTGAAATATCAGCTTATA+TGG 0.194564 contig316end:-7802 MsG0080048431.01.T01:intergenic
TTATGAACACGACTAGAATT+TGG 0.216990 contig316end:+8418 MsG0080048431.01.T01:CDS
GGGAAGGATGATGTTGTTTA+AGG 0.226381 contig316end:+9240 MsG0080048431.01.T01:CDS
TCATGTTTGATGGATCTTAT+AGG 0.299693 contig316end:+9287 MsG0080048431.01.T01:CDS
AACTCAATCCAGATCAAGTT+TGG 0.306008 contig316end:-10588 MsG0080048431.01.T01:intergenic
CTTCGCTTGGTCCTCGCATT+AGG 0.310386 contig316end:+8647 MsG0080048431.01.T01:CDS
CATTTCCTAAAATCTCCCTC+TGG 0.337579 contig316end:+10731 MsG0080048431.01.T01:three_prime_UTR
TAGTGATTTGGTAGAGGATC+TGG 0.342831 contig316end:+9488 MsG0080048431.01.T01:CDS
CTGTGCTGTTGTGGAAGGTT+TGG 0.342880 contig316end:+8759 MsG0080048431.01.T01:CDS
CAGTAATATGCACCAGAATC+AGG 0.344639 contig316end:-8835 MsG0080048431.01.T01:intergenic
TTTCAGAAGAAGTTGGTAGA+AGG 0.346459 contig316end:+7712 MsG0080048431.01.T01:CDS
CGGTGTGGGCGCAAACTTCT+TGG 0.348141 contig316end:-7891 MsG0080048431.01.T01:intergenic
AAATCTCCCTCTGGGTTTAT+GGG 0.351497 contig316end:+10740 MsG0080048431.01.T01:three_prime_UTR
CAAACTTCTTGGATCTTAAT+CGG 0.352336 contig316end:-7880 MsG0080048431.01.T01:intergenic
GGAAGCTGGGGAAGGATTGC+CGG 0.355817 contig316end:+8258 MsG0080048431.01.T01:CDS
GTTGTGGAAGGTTTGGTTGA+GGG 0.360112 contig316end:+8766 MsG0080048431.01.T01:CDS
CAGAATTCCTCAACAATAGA+TGG 0.369411 contig316end:-9331 MsG0080048431.01.T01:intergenic
CATGTTTGATGGATCTTATA+GGG 0.370520 contig316end:+9288 MsG0080048431.01.T01:CDS
CTTCCGAGAGAGAGTACGTT+AGG 0.377349 contig316end:+8042 MsG0080048431.01.T01:CDS
AATATAACCTTGGAACCATA+TGG 0.377849 contig316end:-8882 MsG0080048431.01.T01:intergenic
GGATGCTGAGTTGAGTGAAT+TGG 0.378551 contig316end:+10108 MsG0080048431.01.T01:CDS
AGGAGTGTTACTCCTGATTC+TGG 0.380403 contig316end:+8823 MsG0080048431.01.T01:CDS
AATTATGTGTTGTAGGTATA+AGG 0.382305 contig316end:+8961 MsG0080048431.01.T01:intron
GGTGACATGCAACTGTTTCT+TGG 0.386320 contig316end:+9037 MsG0080048431.01.T01:CDS
CAAGGCTCCCAAACTTGATC+TGG 0.387928 contig316end:+10580 MsG0080048431.01.T01:CDS
AGCCTGATCAGGTTTCAAAA+AGG 0.390572 contig316end:-7477 MsG0080048431.01.T01:intergenic
GGTCGTGTGTCTGATACATC+TGG 0.392611 contig316end:+10202 MsG0080048431.01.T01:CDS
GATGTTGTTGGTTTGATGAC+TGG 0.398535 contig316end:+8014 MsG0080048431.01.T01:intron
ATACAACAATTGCCTTCTAA+TGG 0.399641 contig316end:-7686 MsG0080048431.01.T01:intergenic
CAGATCAAGTTTGGGAGCCT+TGG 0.400511 contig316end:-10579 MsG0080048431.01.T01:intergenic
AAGGTTGAGTGTGCGTTGTT+TGG 0.400585 contig316end:+8202 MsG0080048431.01.T01:intron
GCAGTGTTTGTGATGTTTGA+TGG 0.403092 contig316end:+9016 MsG0080048431.01.T01:CDS
TGTTTGTGTGATATTGTTCC+TGG 0.404785 contig316end:+7401 MsG0080048431.01.T01:CDS
AAATACTGCTCCAGTTCTTA+AGG 0.409409 contig316end:+10231 MsG0080048431.01.T01:CDS
CAAAATGTTACCTTAAGAAC+TGG 0.411162 contig316end:-10241 MsG0080048431.01.T01:intergenic
TTGTGGAAGGTTTGGTTGAG+GGG 0.411929 contig316end:+8767 MsG0080048431.01.T01:CDS
TTACAAAGCATAAAGTCTAA+TGG 0.418387 contig316end:-10662 MsG0080048431.01.T01:intergenic
TATGAACACGACTAGAATTT+GGG 0.418474 contig316end:+8419 MsG0080048431.01.T01:CDS
GGGTTCTGAGGTTAGTGATT+TGG 0.419541 contig316end:+9476 MsG0080048431.01.T01:CDS
TCCTGAGATTGTTAGTTTGA+AGG 0.424223 contig316end:+9219 MsG0080048431.01.T01:CDS
TCAACAGAGTTAGCCTGATC+AGG 0.429762 contig316end:-7488 MsG0080048431.01.T01:intergenic
CGCAAGGCATTTGACGCAGT+TGG 0.430086 contig316end:+10527 MsG0080048431.01.T01:CDS
TAATTCTGTGTAGATGTTGT+TGG 0.433961 contig316end:+8002 MsG0080048431.01.T01:intron
TCTAGTGTTGTTCCTTCGCT+TGG 0.436276 contig316end:+8634 MsG0080048431.01.T01:CDS
TTTGCAGTTGCCCCTGGTGT+TGG 0.441612 contig316end:+7757 MsG0080048431.01.T01:CDS
CCCTTCAAACTAACAATCTC+AGG 0.442351 contig316end:-9220 MsG0080048431.01.T01:intergenic
CTACTGCTGCTGAGAAGAAT+GGG 0.445703 contig316end:+10477 MsG0080048431.01.T01:CDS
CAGACCCTAGCTGTGGATCC+TGG 0.446283 contig316end:+10392 MsG0080048431.01.T01:intron
CAGAAGAAGTTGGTAGAAGG+AGG 0.447420 contig316end:+7715 MsG0080048431.01.T01:CDS
TGTGTCTCCTCAACAACCTC+TGG 0.450330 contig316end:-10139 MsG0080048431.01.T01:intergenic
GATGCTGAGTTGAGTGAATT+GGG 0.450630 contig316end:+10109 MsG0080048431.01.T01:CDS
GTCGAGAAGACTGCATCTGC+AGG 0.453268 contig316end:+9262 MsG0080048431.01.T01:CDS
AGCGAAGGAACAACACTAGA+AGG 0.454161 contig316end:-8631 MsG0080048431.01.T01:intergenic
GCTACTGCTGCTGAGAAGAA+TGG 0.456853 contig316end:+10476 MsG0080048431.01.T01:CDS
AGATTCATGCCACCATTAGA+AGG 0.458064 contig316end:+7674 MsG0080048431.01.T01:CDS
GCAGTAGCTCCTGACAGGTC+TGG 0.460741 contig316end:-10461 MsG0080048431.01.T01:intergenic
TCTGCAGGGGTCATGTTTGA+TGG 0.461394 contig316end:+9277 MsG0080048431.01.T01:CDS
ATGTTGTTGGTTTGATGACT+GGG 0.464793 contig316end:+8015 MsG0080048431.01.T01:CDS
AATATCACACAAACAATCAA+TGG 0.466623 contig316end:-7393 MsG0080048431.01.T01:intergenic
AACATAGATACTCATACAAT+AGG 0.466758 contig316end:-10818 MsG0080048431.01.T01:intergenic
TGGATGTGAGGCTGTAAGTT+TGG 0.469171 contig316end:+10412 MsG0080048431.01.T01:CDS
ATCCTGCGCGTCGTTGTCAT+AGG 0.469694 contig316end:+8803 MsG0080048431.01.T01:CDS
CCTGAGATTGTTAGTTTGAA+GGG 0.471203 contig316end:+9220 MsG0080048431.01.T01:CDS
ATTTCCTAAAATCTCCCTCT+GGG 0.472904 contig316end:+10732 MsG0080048431.01.T01:three_prime_UTR
GGATGGAAAGGTTACTAAGA+TGG 0.473621 contig316end:+8064 MsG0080048431.01.T01:CDS
AGAGTACGTTAGGGATGGAA+AGG 0.475235 contig316end:+8052 MsG0080048431.01.T01:CDS
AATTTCACAGCCTCTTCAAA+AGG 0.476523 contig316end:-8450 MsG0080048431.01.T01:intergenic
TCATACTTTGCAGTTGCCCC+TGG 0.477173 contig316end:+7751 MsG0080048431.01.T01:CDS
CTCTGATGTTGTGGGTTCTG+AGG 0.483251 contig316end:+9464 MsG0080048431.01.T01:CDS
TGTGGAAGGTTTGGTTGAGG+GGG 0.488124 contig316end:+8768 MsG0080048431.01.T01:CDS
TGTTGTGGAAGGTTTGGTTG+AGG 0.488730 contig316end:+8765 MsG0080048431.01.T01:CDS
GGTTGTCTACTATGTTGTGT+TGG 0.491458 contig316end:+10634 MsG0080048431.01.T01:three_prime_UTR
TGGATCTTATAGGGTGAAGA+GGG 0.492867 contig316end:+9297 MsG0080048431.01.T01:CDS
GTTGTCTGTGCTGTTGTGGA+AGG 0.494419 contig316end:+8754 MsG0080048431.01.T01:CDS
GGATCAAGGTGCGTGTGCTT+AGG 0.496137 contig316end:+7438 MsG0080048431.01.T01:CDS
AATGTGCAGTTTGTGTCTGA+TGG 0.498589 contig316end:+10082 MsG0080048431.01.T01:intron
CTCTGTTAGACTGAAAATGC+TGG 0.501150 contig316end:+9187 MsG0080048431.01.T01:intron
GCTGATTATGATTATTTGGT+TGG 0.504058 contig316end:+7913 MsG0080048431.01.T01:CDS
TGAGGTTAGTGATTTGGTAG+AGG 0.506036 contig316end:+9482 MsG0080048431.01.T01:CDS
ACTCAATCCAGATCAAGTTT+GGG 0.509725 contig316end:-10587 MsG0080048431.01.T01:intergenic
TATCAGCTTATATGGATGAA+TGG 0.512952 contig316end:-7794 MsG0080048431.01.T01:intergenic
TGTTGAGGAGACACAAATTG+AGG 0.516639 contig316end:+10147 MsG0080048431.01.T01:CDS
CATTAGGCCTTCGATTGAAG+AGG 0.522179 contig316end:+8663 MsG0080048431.01.T01:CDS
CTGGATTGAGTTCACCTGTA+GGG 0.523875 contig316end:+10599 MsG0080048431.01.T01:exon
AATATCAGTGTTGCAATCCA+TGG 0.525062 contig316end:+8601 MsG0080048431.01.T01:intron
CAGCAGCAGTAGCTCCTGAC+AGG 0.525221 contig316end:-10466 MsG0080048431.01.T01:intergenic
TGATTCTCTCCAGAAGATGA+TGG 0.528400 contig316end:+8234 MsG0080048431.01.T01:CDS
CACTAGAAGGTTCAATGCCA+TGG 0.529130 contig316end:-8618 MsG0080048431.01.T01:intergenic
ATCCTCCATGACTCTCTACC+AGG 0.529476 contig316end:-7419 MsG0080048431.01.T01:intergenic
AGATTGTTAGTTTGAAGGGA+AGG 0.530656 contig316end:+9224 MsG0080048431.01.T01:CDS
AATGTTGTTGTTACTCCAGT+GGG 0.530779 contig316end:+10181 MsG0080048431.01.T01:CDS
GTACGGTATGAGCCAACACC+AGG 0.531748 contig316end:-7769 MsG0080048431.01.T01:intergenic
TTTAAAAGTCCAGACCTGTC+AGG 0.532245 contig316end:+10452 MsG0080048431.01.T01:CDS
ATAAATATACACACCTTGGC+CGG 0.532251 contig316end:-9528 MsG0080048431.01.T01:intergenic
ATCGGAGAAAGTCCATGCAC+AGG 0.532897 contig316end:-7862 MsG0080048431.01.T01:intergenic
TTCACAGCCTCTTCAAAAGG+AGG 0.533603 contig316end:-8447 MsG0080048431.01.T01:intergenic
GATTCTCTCCAGAAGATGAT+GGG 0.535338 contig316end:+8235 MsG0080048431.01.T01:CDS
TGTGAAGCATGTGTTCCATA+TGG 0.535840 contig316end:+8867 MsG0080048431.01.T01:CDS
ATCCCTAACGTACTCTCTCT+CGG 0.537768 contig316end:-8045 MsG0080048431.01.T01:intergenic
GACACAAATTGAGGATTTCG+TGG 0.538543 contig316end:+10156 MsG0080048431.01.T01:CDS
TTGAATGCCATTGTGGAGGA+TGG 0.542450 contig316end:+8724 MsG0080048431.01.T01:CDS
AAACTTACAGCCTCACATCC+AGG 0.544375 contig316end:-10410 MsG0080048431.01.T01:intergenic
GCTGTAAGTTTGGCGGATGA+TGG 0.546225 contig316end:+10422 MsG0080048431.01.T01:CDS
TTATGTTGTCTGTGCTGTTG+TGG 0.548070 contig316end:+8750 MsG0080048431.01.T01:CDS
TTCCGAGAGAGAGTACGTTA+GGG 0.549663 contig316end:+8043 MsG0080048431.01.T01:CDS
CACATCCAGGATCCACAGCT+AGG 0.550757 contig316end:-10397 MsG0080048431.01.T01:intergenic
GTATCAGACACACGACCCAC+TGG 0.552972 contig316end:-10196 MsG0080048431.01.T01:intergenic
TAGAGAGTCATGGAGGATCA+AGG 0.553834 contig316end:+7424 MsG0080048431.01.T01:CDS
TTCTGGTGCATATTACTGCA+AGG 0.555168 contig316end:+8840 MsG0080048431.01.T01:CDS
TCAGGCTAACTCTGTTGAGA+TGG 0.555939 contig316end:+7493 MsG0080048431.01.T01:CDS
CTCCTATGACAACGACGCGC+AGG 0.556082 contig316end:-8805 MsG0080048431.01.T01:intergenic
GGAATTCTGCACTTCTGTCA+AGG 0.559554 contig316end:+9345 MsG0080048431.01.T01:CDS
ATGGATCTTATAGGGTGAAG+AGG 0.564607 contig316end:+9296 MsG0080048431.01.T01:CDS
ATGTGTTCCATATGGTTCCA+AGG 0.573536 contig316end:+8875 MsG0080048431.01.T01:CDS
AAGAAATCCTCTTCAATCGA+AGG 0.574744 contig316end:-8670 MsG0080048431.01.T01:intergenic
GCAGTTTGTGTCTGATGGTG+TGG 0.575103 contig316end:+10087 MsG0080048431.01.T01:intron
TAATGTTGTTGTTACTCCAG+TGG 0.578117 contig316end:+10180 MsG0080048431.01.T01:CDS
TATATGGATGAATGGTAGTA+CGG 0.578247 contig316end:-7786 MsG0080048431.01.T01:intergenic
TCTGGATTGAGTTCACCTGT+AGG 0.578340 contig316end:+10598 MsG0080048431.01.T01:exon
AATGAAGACAAAGGTGGAGA+GGG 0.584507 contig316end:+7822 MsG0080048431.01.T01:CDS
AGCTGTGGATCCTGGATGTG+AGG 0.585040 contig316end:+10400 MsG0080048431.01.T01:CDS
CCACACAGTCTCAACCCTAC+AGG 0.585086 contig316end:-10613 MsG0080048431.01.T01:intergenic
TTGTTCCTGGTAGAGAGTCA+TGG 0.586636 contig316end:+7414 MsG0080048431.01.T01:CDS
TGAGGATCCAGAGGTTGTTG+AGG 0.588057 contig316end:+10132 MsG0080048431.01.T01:CDS
ATAATCATAATCAGCGGTGT+GGG 0.589439 contig316end:-7905 MsG0080048431.01.T01:intergenic
GAGAGAGAGTACGTTAGGGA+TGG 0.590043 contig316end:+8047 MsG0080048431.01.T01:CDS
TGAATGCCATTGTGGAGGAT+GGG 0.592525 contig316end:+8725 MsG0080048431.01.T01:CDS
GGTGCGTGTGCTTAGGATGT+GGG 0.592953 contig316end:+7445 MsG0080048431.01.T01:CDS
TGTTGATCCATCTATTGTTG+AGG 0.594848 contig316end:+9324 MsG0080048431.01.T01:CDS
TGCTAAAGAGACACCGGCCA+AGG 0.594898 contig316end:+9515 MsG0080048431.01.T01:CDS
TCGAGAAGACTGCATCTGCA+GGG 0.595551 contig316end:+9263 MsG0080048431.01.T01:CDS
CAACAATTGCCTTCTAATGG+TGG 0.596619 contig316end:-7683 MsG0080048431.01.T01:intergenic
AGGTGCGTGTGCTTAGGATG+TGG 0.597101 contig316end:+7444 MsG0080048431.01.T01:CDS
GAGGCTGTGAAATTTAGAGA+AGG 0.598448 contig316end:+8459 MsG0080048431.01.T01:CDS
AGGCTGTGAAATTTAGAGAA+GGG 0.600321 contig316end:+8460 MsG0080048431.01.T01:CDS
ATGTGAGGCTGTAAGTTTGG+CGG 0.600972 contig316end:+10415 MsG0080048431.01.T01:CDS
ACATCCAGGATCCACAGCTA+GGG 0.605603 contig316end:-10396 MsG0080048431.01.T01:intergenic
AAATGAAGACAAAGGTGGAG+AGG 0.612097 contig316end:+7821 MsG0080048431.01.T01:CDS
AGTTCACTTATCCCTGTGCA+TGG 0.617904 contig316end:+7850 MsG0080048431.01.T01:CDS
TCTGGTGCATATTACTGCAA+GGG 0.618450 contig316end:+8841 MsG0080048431.01.T01:CDS
AATAATCATAATCAGCGGTG+TGG 0.624084 contig316end:-7906 MsG0080048431.01.T01:intergenic
AGCTAAGAGAAATTTGCGCA+AGG 0.625659 contig316end:+10511 MsG0080048431.01.T01:CDS
CGAGAAGACTGCATCTGCAG+GGG 0.629581 contig316end:+9264 MsG0080048431.01.T01:CDS
GCATTGATGTTATGTCGTTG+TGG 0.630137 contig316end:+10774 MsG0080048431.01.T01:three_prime_UTR
CTGGTGCATATTACTGCAAG+GGG 0.631078 contig316end:+8842 MsG0080048431.01.T01:CDS
TCGGAGAAAGTCCATGCACA+GGG 0.632550 contig316end:-7861 MsG0080048431.01.T01:intergenic
ATTTCAAATGAAGACAAAGG+TGG 0.632682 contig316end:+7816 MsG0080048431.01.T01:CDS
GATATTTCAAATGAAGACAA+AGG 0.634663 contig316end:+7813 MsG0080048431.01.T01:CDS
ATTCTCTCCAGAAGATGATG+GGG 0.636639 contig316end:+8236 MsG0080048431.01.T01:CDS
CTATGAGTTGAATGCCATTG+TGG 0.639853 contig316end:+8717 MsG0080048431.01.T01:CDS
GTCGTGTGTCTGATACATCT+GGG 0.644547 contig316end:+10203 MsG0080048431.01.T01:CDS
CTAATGCGAGGACCAAGCGA+AGG 0.655277 contig316end:-8646 MsG0080048431.01.T01:intergenic
GGATGTTGCTAAAGAGACAC+CGG 0.657933 contig316end:+9509 MsG0080048431.01.T01:CDS
AACCAAATAATCATAATCAG+CGG 0.658464 contig316end:-7911 MsG0080048431.01.T01:intergenic
AATACTCCCATAAACCCAGA+GGG 0.663322 contig316end:-10746 MsG0080048431.01.T01:intergenic
TTCAAACTAACAATCTCAGG+AGG 0.664295 contig316end:-9217 MsG0080048431.01.T01:intergenic
TTTGCAGCAGACCCTAGCTG+TGG 0.668538 contig316end:+10385 MsG0080048431.01.T01:intron
TGAGTTGAGTGAATTGGGTG+AGG 0.670731 contig316end:+10114 MsG0080048431.01.T01:CDS
ATAAATCCCATCCTCCACAA+TGG 0.672201 contig316end:-8731 MsG0080048431.01.T01:intergenic
TCAATCGAAGGCCTAATGCG+AGG 0.683338 contig316end:-8658 MsG0080048431.01.T01:intergenic
CCTGTAGGGTTGAGACTGTG+TGG 0.692195 contig316end:+10613 MsG0080048431.01.T01:three_prime_UTR
TGAATTGGGTGAGGATCCAG+AGG 0.695337 contig316end:+10123 MsG0080048431.01.T01:CDS
CACTACCACCAAGAAAACCA+AGG 0.705071 contig316end:+10562 MsG0080048431.01.T01:CDS
TACTGCTGCTGAGAAGAATG+GGG 0.711790 contig316end:+10478 MsG0080048431.01.T01:CDS
TACGGTATGAGCCAACACCA+GGG 0.713804 contig316end:-7768 MsG0080048431.01.T01:intergenic
TTCTCTCCAGAAGATGATGG+GGG 0.715015 contig316end:+8237 MsG0080048431.01.T01:CDS
GCGTGTGCTTAGGATGTGGG+AGG 0.715566 contig316end:+7448 MsG0080048431.01.T01:CDS
TGAGTTGAATGCCATTGTGG+AGG 0.719334 contig316end:+8720 MsG0080048431.01.T01:CDS
ACGGTATGAGCCAACACCAG+GGG 0.725542 contig316end:-7767 MsG0080048431.01.T01:intergenic
AAATACTCCCATAAACCCAG+AGG 0.730541 contig316end:-10747 MsG0080048431.01.T01:intergenic
TTCCTGGTAGAGAGTCATGG+AGG 0.748573 contig316end:+7417 MsG0080048431.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACAAATTTTAAAATTAAAAC+AGG - contig316end:7976-7995 MsG0080048431.01.T01:intergenic 10.0%
!! GTGTATATTTATTCTATTAA+CGG + contig316end:9539-9558 MsG0080048431.01.T01:intron 15.0%
!!! ATCAATATATTTTTCAGAAA+AGG - contig316end:9986-10005 MsG0080048431.01.T01:intergenic 15.0%
!!! ATTTGCATTTTGTAATTTAT+GGG + contig316end:8350-8369 MsG0080048431.01.T01:intron 15.0%
!!! GGTTTATATAAATTTAGAAT+AGG + contig316end:10282-10301 MsG0080048431.01.T01:intron 15.0%
!!! TATTTGCATTTTGTAATTTA+TGG + contig316end:8349-8368 MsG0080048431.01.T01:intron 15.0%
!!! TGTTATTCAAATATTTTGTA+TGG + contig316end:8921-8940 MsG0080048431.01.T01:intron 15.0%
!!! TTATATAAATTTAGAATAGG+AGG + contig316end:10285-10304 MsG0080048431.01.T01:intron 15.0%
!! AAGAATTTATGCAACAATTA+AGG - contig316end:10362-10381 MsG0080048431.01.T01:intergenic 20.0%
!! ATTAACGGAAAATTTATGTT+AGG + contig316end:9554-9573 MsG0080048431.01.T01:intron 20.0%
!! ATTACAAAATGCAAATAAAC+AGG - contig316end:8346-8365 MsG0080048431.01.T01:intergenic 20.0%
!! TATAAATTTCTCAATAGTAC+AGG - contig316end:7586-7605 MsG0080048431.01.T01:intergenic 20.0%
!! TGAGAAAAAAAATATTGGTA+AGG + contig316end:9931-9950 MsG0080048431.01.T01:intron 20.0%
!! TTATTGTAATTATGTGTTGT+AGG + contig316end:8954-8973 MsG0080048431.01.T01:intron 20.0%
!!! AACTCATAGATATTTTTCTT+GGG - contig316end:8706-8725 MsG0080048431.01.T01:intergenic 20.0%
!!! ACATTTTGCTTTTATAACTT+TGG + contig316end:10256-10275 MsG0080048431.01.T01:intron 20.0%
!!! AGCATTGAGAAAAAAAATAT+TGG + contig316end:9926-9945 MsG0080048431.01.T01:intron 20.0%
!!! ATTTGAAATATCAGCTTATA+TGG - contig316end:7805-7824 MsG0080048431.01.T01:intergenic 20.0%
!!! GATTATTTATTTTGTCTATC+AGG + contig316end:7540-7559 MsG0080048431.01.T01:intron 20.0%
!!! GGTTTAATTTAATATAACCT+TGG - contig316end:8895-8914 MsG0080048431.01.T01:intergenic 20.0%
! AAATATTTGAATAACAGCGA+TGG - contig316end:8917-8936 MsG0080048431.01.T01:intergenic 25.0%
! AACATAGATACTCATACAAT+AGG - contig316end:10821-10840 MsG0080048431.01.T01:intergenic 25.0%
! AACCAAATAATCATAATCAG+CGG - contig316end:7914-7933 MsG0080048431.01.T01:intergenic 25.0%
! AATATCACACAAACAATCAA+TGG - contig316end:7396-7415 MsG0080048431.01.T01:intergenic 25.0%
! AATATTTGAATAACAGCGAT+GGG - contig316end:8916-8935 MsG0080048431.01.T01:intergenic 25.0%
! AATTATGTGTTGTAGGTATA+AGG + contig316end:8961-8980 MsG0080048431.01.T01:intron 25.0%
! AGAAAAGGCTTCATAATTAA+TGG - contig316end:9971-9990 MsG0080048431.01.T01:intergenic 25.0%
! AGGTAGACATATTATATTAG+TGG + contig316end:10305-10324 MsG0080048431.01.T01:intron 25.0%
! CAAAAGAGTGAAACATTTAA+TGG + contig316end:9688-9707 MsG0080048431.01.T01:intron 25.0%
! GATATTTCAAATGAAGACAA+AGG + contig316end:7813-7832 MsG0080048431.01.T01:CDS 25.0%
! TAGAATAAATATACACACCT+TGG - contig316end:9535-9554 MsG0080048431.01.T01:intergenic 25.0%
! TGTTGCATTAACTAATTATG+TGG + contig316end:9877-9896 MsG0080048431.01.T01:intron 25.0%
! TTACAAAGCATAAAGTCTAA+TGG - contig316end:10665-10684 MsG0080048431.01.T01:intergenic 25.0%
! TTAGTTCACTTGCAATAAAT+TGG + contig316end:9588-9607 MsG0080048431.01.T01:intron 25.0%
! TTGCAAATAAAGACAAAAAC+CGG - contig316end:9143-9162 MsG0080048431.01.T01:intergenic 25.0%
!! AAACTATATTAACCCTGTTT+TGG + contig316end:8163-8182 MsG0080048431.01.T01:intron 25.0%
!! ACTCATAGATATTTTTCTTG+GGG - contig316end:8705-8724 MsG0080048431.01.T01:intergenic 25.0%
!! ATAAATTGGACAGTTTCTTT+TGG + contig316end:9602-9621 MsG0080048431.01.T01:intron 25.0%
!! CAACTCATAGATATTTTTCT+TGG - contig316end:8707-8726 MsG0080048431.01.T01:intergenic 25.0%
!! GATACTTTGGTAACTTAAAA+TGG - contig316end:10035-10054 MsG0080048431.01.T01:intergenic 25.0%
!!! TTGCTTTTATAACTTTGGTT+GGG + contig316end:10261-10280 MsG0080048431.01.T01:intron 25.0%
!!! TTTGCTTTTATAACTTTGGT+TGG + contig316end:10260-10279 MsG0080048431.01.T01:intron 25.0%
AACTACAAATGGAAAGCAAT+CGG - contig316end:9441-9460 MsG0080048431.01.T01:intergenic 30.0%
AATATAACCTTGGAACCATA+TGG - contig316end:8885-8904 MsG0080048431.01.T01:intergenic 30.0%
AATGAGAAAAACACCAAAAC+AGG - contig316end:8179-8198 MsG0080048431.01.T01:intergenic 30.0%
ACGGAAAATTTATGTTAGGT+AGG + contig316end:9558-9577 MsG0080048431.01.T01:intron 30.0%
AGGACAGAAAATTTATACCT+CGG - contig316end:8318-8337 MsG0080048431.01.T01:intergenic 30.0%
ATACAACAATTGCCTTCTAA+TGG - contig316end:7689-7708 MsG0080048431.01.T01:intergenic 30.0%
ATGAGAAAAACACCAAAACA+GGG - contig316end:8178-8197 MsG0080048431.01.T01:intergenic 30.0%
ATTTCAAATGAAGACAAAGG+TGG + contig316end:7816-7835 MsG0080048431.01.T01:CDS 30.0%
CAAAATGTTACCTTAAGAAC+TGG - contig316end:10244-10263 MsG0080048431.01.T01:intergenic 30.0%
CAAACTTCTTGGATCTTAAT+CGG - contig316end:7883-7902 MsG0080048431.01.T01:intergenic 30.0%
CATCAGAGAAAAACTACAAA+TGG - contig316end:9452-9471 MsG0080048431.01.T01:intergenic 30.0%
GAATCATCTATAACCAACTT+TGG - contig316end:9092-9111 MsG0080048431.01.T01:intergenic 30.0%
GCGAAAATTAAAATATTCCG+AGG + contig316end:8298-8317 MsG0080048431.01.T01:intron 30.0%
GCTGATTATGATTATTTGGT+TGG + contig316end:7913-7932 MsG0080048431.01.T01:CDS 30.0%
TAATTCTGTGTAGATGTTGT+TGG + contig316end:8002-8021 MsG0080048431.01.T01:intron 30.0%
TATATGGATGAATGGTAGTA+CGG - contig316end:7789-7808 MsG0080048431.01.T01:intergenic 30.0%
TATCAGCTTATATGGATGAA+TGG - contig316end:7797-7816 MsG0080048431.01.T01:intergenic 30.0%
TATCTGTTTATATGCAGAGA+GGG + contig316end:8380-8399 MsG0080048431.01.T01:intron 30.0%
TATGAACACGACTAGAATTT+GGG + contig316end:8419-8438 MsG0080048431.01.T01:CDS 30.0%
TGGTTAGTATATATGTGCTT+TGG - contig316end:9833-9852 MsG0080048431.01.T01:intergenic 30.0%
TTATCTGTTTATATGCAGAG+AGG + contig316end:8379-8398 MsG0080048431.01.T01:intron 30.0%
TTATGAACACGACTAGAATT+TGG + contig316end:8418-8437 MsG0080048431.01.T01:CDS 30.0%
! CATGTTTGATGGATCTTATA+GGG + contig316end:9288-9307 MsG0080048431.01.T01:CDS 30.0%
! TAGTTTTTCTCTGATGTTGT+GGG + contig316end:9456-9475 MsG0080048431.01.T01:intron 30.0%
! TCATGTTTGATGGATCTTAT+AGG + contig316end:9287-9306 MsG0080048431.01.T01:CDS 30.0%
!! GTATGTTTTTCAGAAGAAGT+TGG + contig316end:7705-7724 MsG0080048431.01.T01:CDS 30.0%
!! TTTTAGGAAATGGAACATAG+AGG - contig316end:10723-10742 MsG0080048431.01.T01:intergenic 30.0%
!!! TAACCACTGTTTTTATTTGC+TGG + contig316end:9847-9866 MsG0080048431.01.T01:intron 30.0%
!!! TGTTTTGGTGTTTTTCTCAT+TGG + contig316end:8178-8197 MsG0080048431.01.T01:intron 30.0%
!!! TTTTTTCTGTTGTGTGACTT+TGG + contig316end:8510-8529 MsG0080048431.01.T01:intron 30.0%
AAAACCCATGAATTGTTTGC+AGG + contig316end:9778-9797 MsG0080048431.01.T01:intron 35.0%
AAATACTGCTCCAGTTCTTA+AGG + contig316end:10231-10250 MsG0080048431.01.T01:CDS 35.0%
AACAATTAAGGTCTACAGAG+AGG - contig316end:10350-10369 MsG0080048431.01.T01:intergenic 35.0%
AACTCAATCCAGATCAAGTT+TGG - contig316end:10591-10610 MsG0080048431.01.T01:intergenic 35.0%
AAGAAATCCTCTTCAATCGA+AGG - contig316end:8673-8692 MsG0080048431.01.T01:intergenic 35.0%
AATAATCATAATCAGCGGTG+TGG - contig316end:7909-7928 MsG0080048431.01.T01:intergenic 35.0%
AATATCAGTGTTGCAATCCA+TGG + contig316end:8601-8620 MsG0080048431.01.T01:intron 35.0%
AATTTCACAGCCTCTTCAAA+AGG - contig316end:8453-8472 MsG0080048431.01.T01:intergenic 35.0%
ACTCAATCCAGATCAAGTTT+GGG - contig316end:10590-10609 MsG0080048431.01.T01:intergenic 35.0%
AGGCTGTGAAATTTAGAGAA+GGG + contig316end:8460-8479 MsG0080048431.01.T01:CDS 35.0%
AGGTATTAGAATCATGCTGA+GGG + contig316end:9637-9656 MsG0080048431.01.T01:intron 35.0%
ATAAATATACACACCTTGGC+CGG - contig316end:9531-9550 MsG0080048431.01.T01:intergenic 35.0%
ATAATCATAATCAGCGGTGT+GGG - contig316end:7908-7927 MsG0080048431.01.T01:intergenic 35.0%
ATGCAAATAAACAGGCAAAC+AGG - contig316end:8338-8357 MsG0080048431.01.T01:intergenic 35.0%
ATTTCCTAAAATCTCCCTCT+GGG + contig316end:10732-10751 MsG0080048431.01.T01:three_prime_UTR 35.0%
CAGAATTCCTCAACAATAGA+TGG - contig316end:9334-9353 MsG0080048431.01.T01:intergenic 35.0%
GATCAGGTTTCAAAAAGGTT+GGG - contig316end:7475-7494 MsG0080048431.01.T01:intergenic 35.0%
TAGGTATTAGAATCATGCTG+AGG + contig316end:9636-9655 MsG0080048431.01.T01:intron 35.0%
TATTGTTGTGGTTTCTTCAC+CGG + contig316end:9121-9140 MsG0080048431.01.T01:intron 35.0%
TGATCAGGTTTCAAAAAGGT+TGG - contig316end:7476-7495 MsG0080048431.01.T01:intergenic 35.0%
TGTTGATCCATCTATTGTTG+AGG + contig316end:9324-9343 MsG0080048431.01.T01:CDS 35.0%
TGTTTGTGTGATATTGTTCC+TGG + contig316end:7401-7420 MsG0080048431.01.T01:CDS 35.0%
TTAAACGACATGATTCACGA+TGG - contig316end:9760-9779 MsG0080048431.01.T01:intergenic 35.0%
TTCAAACTAACAATCTCAGG+AGG - contig316end:9220-9239 MsG0080048431.01.T01:intergenic 35.0%
TTGCCAGCAAATAAAAACAG+TGG - contig316end:9853-9872 MsG0080048431.01.T01:intergenic 35.0%
TTGGTTATAGATGATTCTCC+TGG + contig316end:9095-9114 MsG0080048431.01.T01:intron 35.0%
TTTGATGTGGTTACTATGCA+GGG + contig316end:7950-7969 MsG0080048431.01.T01:intron 35.0%
! AATGTTGTTGTTACTCCAGT+GGG + contig316end:10181-10200 MsG0080048431.01.T01:CDS 35.0%
! AGATTGTTAGTTTGAAGGGA+AGG + contig316end:9224-9243 MsG0080048431.01.T01:CDS 35.0%
! CACCGCTGATTATGATTATT+TGG + contig316end:7909-7928 MsG0080048431.01.T01:CDS 35.0%
! CCTGAGATTGTTAGTTTGAA+GGG + contig316end:9220-9239 MsG0080048431.01.T01:CDS 35.0%
! CTCACTTTGTTTGGATACTT+TGG - contig316end:10048-10067 MsG0080048431.01.T01:intergenic 35.0%
! GTAGTTTTTCTCTGATGTTG+TGG + contig316end:9455-9474 MsG0080048431.01.T01:intron 35.0%
! TAATGTTGTTGTTACTCCAG+TGG + contig316end:10180-10199 MsG0080048431.01.T01:CDS 35.0%
! TCCTGAGATTGTTAGTTTGA+AGG + contig316end:9219-9238 MsG0080048431.01.T01:CDS 35.0%
! TGGTGTTTTTCTCATTGGTA+AGG + contig316end:8183-8202 MsG0080048431.01.T01:intron 35.0%
!! AGCTATTGCGTTTTGATGTA+TGG + contig316end:9408-9427 MsG0080048431.01.T01:intron 35.0%
!! ATGTTGTTGGTTTGATGACT+GGG + contig316end:8015-8034 MsG0080048431.01.T01:CDS 35.0%
!! TTTCAGAAGAAGTTGGTAGA+AGG + contig316end:7712-7731 MsG0080048431.01.T01:CDS 35.0%
!!! AACCTTTTTGAAACCTGATC+AGG + contig316end:7475-7494 MsG0080048431.01.T01:CDS 35.0%
!!! CTGTTTTTATTTGCTGGCAA+TGG + contig316end:9853-9872 MsG0080048431.01.T01:intron 35.0%
!!! GATGGTTTTGATTGATGAGA+AGG + contig316end:7511-7530 MsG0080048431.01.T01:CDS 35.0%
AAAATCTCCCTCTGGGTTTA+TGG + contig316end:10739-10758 MsG0080048431.01.T01:three_prime_UTR 40.0%
AAATACTCCCATAAACCCAG+AGG - contig316end:10750-10769 MsG0080048431.01.T01:intergenic 40.0%
AAATCTCCCTCTGGGTTTAT+GGG + contig316end:10740-10759 MsG0080048431.01.T01:three_prime_UTR 40.0%
AAATGAAGACAAAGGTGGAG+AGG + contig316end:7821-7840 MsG0080048431.01.T01:CDS 40.0%
AATACTCCCATAAACCCAGA+GGG - contig316end:10749-10768 MsG0080048431.01.T01:intergenic 40.0%
AATGAAGACAAAGGTGGAGA+GGG + contig316end:7822-7841 MsG0080048431.01.T01:CDS 40.0%
AATGGAAAGCAATCGGTCTT+AGG - contig316end:9434-9453 MsG0080048431.01.T01:intergenic 40.0%
AATGTGCAGTTTGTGTCTGA+TGG + contig316end:10082-10101 MsG0080048431.01.T01:intron 40.0%
AGATTCATGCCACCATTAGA+AGG + contig316end:7674-7693 MsG0080048431.01.T01:CDS 40.0%
AGCATCTCACTCACTTTGTT+TGG - contig316end:10057-10076 MsG0080048431.01.T01:intergenic 40.0%
AGCCTGATCAGGTTTCAAAA+AGG - contig316end:7480-7499 MsG0080048431.01.T01:intergenic 40.0%
AGCTAAGAGAAATTTGCGCA+AGG + contig316end:10511-10530 MsG0080048431.01.T01:CDS 40.0%
ATAAATCCCATCCTCCACAA+TGG - contig316end:8734-8753 MsG0080048431.01.T01:intergenic 40.0%
ATGGATCTTATAGGGTGAAG+AGG + contig316end:9296-9315 MsG0080048431.01.T01:CDS 40.0%
ATGTGTTCCATATGGTTCCA+AGG + contig316end:8875-8894 MsG0080048431.01.T01:CDS 40.0%
ATTCTCTCCAGAAGATGATG+GGG + contig316end:8236-8255 MsG0080048431.01.T01:CDS 40.0%
CAACAATTGCCTTCTAATGG+TGG - contig316end:7686-7705 MsG0080048431.01.T01:intergenic 40.0%
CAGTAATATGCACCAGAATC+AGG - contig316end:8838-8857 MsG0080048431.01.T01:intergenic 40.0%
CATTTCCTAAAATCTCCCTC+TGG + contig316end:10731-10750 MsG0080048431.01.T01:three_prime_UTR 40.0%
CCCTTCAAACTAACAATCTC+AGG - contig316end:9223-9242 MsG0080048431.01.T01:intergenic 40.0%
CTAGCCTGCAAACAATTCAT+GGG - contig316end:9785-9804 MsG0080048431.01.T01:intergenic 40.0%
CTCTGTTAGACTGAAAATGC+TGG + contig316end:9187-9206 MsG0080048431.01.T01:intron 40.0%
GAAACCACAACAATATCACC+AGG - contig316end:9116-9135 MsG0080048431.01.T01:intergenic 40.0%
GACACAAATTGAGGATTTCG+TGG + contig316end:10156-10175 MsG0080048431.01.T01:CDS 40.0%
GAGGCTGTGAAATTTAGAGA+AGG + contig316end:8459-8478 MsG0080048431.01.T01:CDS 40.0%
GATTCTCTCCAGAAGATGAT+GGG + contig316end:8235-8254 MsG0080048431.01.T01:CDS 40.0%
GCAAATTGAACCACAACAAC+CGG - contig316end:8280-8299 MsG0080048431.01.T01:intergenic 40.0%
GCAGTGTTTGTGATGTTTGA+TGG + contig316end:9016-9035 MsG0080048431.01.T01:CDS 40.0%
GGATGGAAAGGTTACTAAGA+TGG + contig316end:8064-8083 MsG0080048431.01.T01:CDS 40.0%
GGTTGTCTACTATGTTGTGT+TGG + contig316end:10634-10653 MsG0080048431.01.T01:three_prime_UTR 40.0%
GTTTGATGTGGTTACTATGC+AGG + contig316end:7949-7968 MsG0080048431.01.T01:intron 40.0%
TCTAGCCTGCAAACAATTCA+TGG - contig316end:9786-9805 MsG0080048431.01.T01:intergenic 40.0%
TCTGGTGCATATTACTGCAA+GGG + contig316end:8841-8860 MsG0080048431.01.T01:CDS 40.0%
TGATTCTCTCCAGAAGATGA+TGG + contig316end:8234-8253 MsG0080048431.01.T01:CDS 40.0%
TGGATCTTATAGGGTGAAGA+GGG + contig316end:9297-9316 MsG0080048431.01.T01:CDS 40.0%
TGTGAAGCATGTGTTCCATA+TGG + contig316end:8867-8886 MsG0080048431.01.T01:CDS 40.0%
TGTTGAGGAGACACAAATTG+AGG + contig316end:10147-10166 MsG0080048431.01.T01:CDS 40.0%
TTAGTTTCTGCAGCCAAAGT+TGG + contig316end:9076-9095 MsG0080048431.01.T01:intron 40.0%
TTCTCCTGGTGATATTGTTG+TGG + contig316end:9109-9128 MsG0080048431.01.T01:intron 40.0%
TTCTGGTGCATATTACTGCA+AGG + contig316end:8840-8859 MsG0080048431.01.T01:CDS 40.0%
TTTAAAAGTCCAGACCTGTC+AGG + contig316end:10452-10471 MsG0080048431.01.T01:CDS 40.0%
! CTATGAGTTGAATGCCATTG+TGG + contig316end:8717-8736 MsG0080048431.01.T01:CDS 40.0%
! GATGCTGAGTTGAGTGAATT+GGG + contig316end:10109-10128 MsG0080048431.01.T01:CDS 40.0%
! GCATTGATGTTATGTCGTTG+TGG + contig316end:10774-10793 MsG0080048431.01.T01:three_prime_UTR 40.0%
! GGGAAGGATGATGTTGTTTA+AGG + contig316end:9240-9259 MsG0080048431.01.T01:CDS 40.0%
! TAAACCCAGAGGGAGATTTT+AGG - contig316end:10739-10758 MsG0080048431.01.T01:intergenic 40.0%
! TTATGTTGTCTGTGCTGTTG+TGG + contig316end:8750-8769 MsG0080048431.01.T01:CDS 40.0%
!! CAGAGGGAGATTTTAGGAAA+TGG - contig316end:10733-10752 MsG0080048431.01.T01:intergenic 40.0%
!! GATGTTGTTGGTTTGATGAC+TGG + contig316end:8014-8033 MsG0080048431.01.T01:intron 40.0%
!! TAGTGATTTGGTAGAGGATC+TGG + contig316end:9488-9507 MsG0080048431.01.T01:CDS 40.0%
!! TCTTTTGGTTGCAGTAGTGT+AGG + contig316end:9617-9636 MsG0080048431.01.T01:intron 40.0%
!! TGAGGTTAGTGATTTGGTAG+AGG + contig316end:9482-9501 MsG0080048431.01.T01:CDS 40.0%
AAACTTACAGCCTCACATCC+AGG - contig316end:10413-10432 MsG0080048431.01.T01:intergenic 45.0%
AAGGTTGAGTGTGCGTTGTT+TGG + contig316end:8202-8221 MsG0080048431.01.T01:intron 45.0%
ACCCTACGAAAGGAAGGAAA+AGG - contig316end:7650-7669 MsG0080048431.01.T01:intergenic 45.0%
AGAGTACGTTAGGGATGGAA+AGG + contig316end:8052-8071 MsG0080048431.01.T01:CDS 45.0%
AGCGAAGGAACAACACTAGA+AGG - contig316end:8634-8653 MsG0080048431.01.T01:intergenic 45.0%
AGTTCACTTATCCCTGTGCA+TGG + contig316end:7850-7869 MsG0080048431.01.T01:CDS 45.0%
ATCCCTAACGTACTCTCTCT+CGG - contig316end:8048-8067 MsG0080048431.01.T01:intergenic 45.0%
ATGTGAGGCTGTAAGTTTGG+CGG + contig316end:10415-10434 MsG0080048431.01.T01:CDS 45.0%
CACTACCACCAAGAAAACCA+AGG + contig316end:10562-10581 MsG0080048431.01.T01:CDS 45.0%
CACTAGAAGGTTCAATGCCA+TGG - contig316end:8621-8640 MsG0080048431.01.T01:intergenic 45.0%
CATTAGGCCTTCGATTGAAG+AGG + contig316end:8663-8682 MsG0080048431.01.T01:CDS 45.0%
CCCTACGAAAGGAAGGAAAA+GGG - contig316end:7649-7668 MsG0080048431.01.T01:intergenic 45.0%
CTACTGCTGCTGAGAAGAAT+GGG + contig316end:10477-10496 MsG0080048431.01.T01:CDS 45.0%
CTGCATGAAGTCATTGCCTT+TGG + contig316end:9732-9751 MsG0080048431.01.T01:intron 45.0%
CTGGATTGAGTTCACCTGTA+GGG + contig316end:10599-10618 MsG0080048431.01.T01:exon 45.0%
CTGGTGCATATTACTGCAAG+GGG + contig316end:8842-8861 MsG0080048431.01.T01:CDS 45.0%
GGAATTCTGCACTTCTGTCA+AGG + contig316end:9345-9364 MsG0080048431.01.T01:CDS 45.0%
GGATGTTGCTAAAGAGACAC+CGG + contig316end:9509-9528 MsG0080048431.01.T01:CDS 45.0%
GTAACCACATCAAACCACAC+TGG - contig316end:7944-7963 MsG0080048431.01.T01:intergenic 45.0%
GTCGTGTGTCTGATACATCT+GGG + contig316end:10203-10222 MsG0080048431.01.T01:CDS 45.0%
TACTGCTGCTGAGAAGAATG+GGG + contig316end:10478-10497 MsG0080048431.01.T01:CDS 45.0%
TAGAGAGTCATGGAGGATCA+AGG + contig316end:7424-7443 MsG0080048431.01.T01:CDS 45.0%
TCAGGCTAACTCTGTTGAGA+TGG + contig316end:7493-7512 MsG0080048431.01.T01:CDS 45.0%
TCTGGATTGAGTTCACCTGT+AGG + contig316end:10598-10617 MsG0080048431.01.T01:exon 45.0%
TGAATGCCATTGTGGAGGAT+GGG + contig316end:8725-8744 MsG0080048431.01.T01:CDS 45.0%
TGGATGTGAGGCTGTAAGTT+TGG + contig316end:10412-10431 MsG0080048431.01.T01:CDS 45.0%
TTCACAGCCTCTTCAAAAGG+AGG - contig316end:8450-8469 MsG0080048431.01.T01:intergenic 45.0%
TTGAATGCCATTGTGGAGGA+TGG + contig316end:8724-8743 MsG0080048431.01.T01:CDS 45.0%
TTGTTCCTGGTAGAGAGTCA+TGG + contig316end:7414-7433 MsG0080048431.01.T01:CDS 45.0%
TTTCCTTCCTTTCGTAGGGT+GGG + contig316end:7650-7669 MsG0080048431.01.T01:intron 45.0%
! CCCTTTTCCTTCCTTTCGTA+GGG + contig316end:7646-7665 MsG0080048431.01.T01:intron 45.0%
! GGATGCTGAGTTGAGTGAAT+TGG + contig316end:10108-10127 MsG0080048431.01.T01:CDS 45.0%
! GGTGACATGCAACTGTTTCT+TGG + contig316end:9037-9056 MsG0080048431.01.T01:CDS 45.0%
! GTTGTGGAAGGTTTGGTTGA+GGG + contig316end:8766-8785 MsG0080048431.01.T01:CDS 45.0%
! TCAACAGAGTTAGCCTGATC+AGG - contig316end:7491-7510 MsG0080048431.01.T01:intergenic 45.0%
! TCCCTTTTCCTTCCTTTCGT+AGG + contig316end:7645-7664 MsG0080048431.01.T01:intron 45.0%
! TCTAGTGTTGTTCCTTCGCT+TGG + contig316end:8634-8653 MsG0080048431.01.T01:CDS 45.0%
! TGAGTTGAATGCCATTGTGG+AGG + contig316end:8720-8739 MsG0080048431.01.T01:CDS 45.0%
! TGAGTTGAGTGAATTGGGTG+AGG + contig316end:10114-10133 MsG0080048431.01.T01:CDS 45.0%
! TGTTGTGGAAGGTTTGGTTG+AGG + contig316end:8765-8784 MsG0080048431.01.T01:CDS 45.0%
! TTCCGAGAGAGAGTACGTTA+GGG + contig316end:8043-8062 MsG0080048431.01.T01:CDS 45.0%
! TTCTCTCCAGAAGATGATGG+GGG + contig316end:8237-8256 MsG0080048431.01.T01:CDS 45.0%
! TTGTGGAAGGTTTGGTTGAG+GGG + contig316end:8767-8786 MsG0080048431.01.T01:CDS 45.0%
! TTTTCCTTCCTTTCGTAGGG+TGG + contig316end:7649-7668 MsG0080048431.01.T01:intron 45.0%
!! AGGAGTGTTACTCCTGATTC+TGG + contig316end:8823-8842 MsG0080048431.01.T01:CDS 45.0%
!! CAGAAGAAGTTGGTAGAAGG+AGG + contig316end:7715-7734 MsG0080048431.01.T01:CDS 45.0%
!! CTTGGTTTTCTTGGTGGTAG+TGG - contig316end:10564-10583 MsG0080048431.01.T01:intergenic 45.0%
!! GGGTTCTGAGGTTAGTGATT+TGG + contig316end:9476-9495 MsG0080048431.01.T01:CDS 45.0%
!! GGTGAATCCTCCTTTTGAAG+AGG + contig316end:8440-8459 MsG0080048431.01.T01:CDS 45.0%
!! TTTGGGAGCCTTGGTTTTCT+TGG - contig316end:10573-10592 MsG0080048431.01.T01:intergenic 45.0%
ACATCCAGGATCCACAGCTA+GGG - contig316end:10399-10418 MsG0080048431.01.T01:intergenic 50.0%
ATCCTCCATGACTCTCTACC+AGG - contig316end:7422-7441 MsG0080048431.01.T01:intergenic 50.0%
ATCGGAGAAAGTCCATGCAC+AGG - contig316end:7865-7884 MsG0080048431.01.T01:intergenic 50.0%
ATGATTCACGATGGCGCCAA+AGG - contig316end:9751-9770 MsG0080048431.01.T01:intergenic 50.0%
CAAGGCTCCCAAACTTGATC+TGG + contig316end:10580-10599 MsG0080048431.01.T01:CDS 50.0%
CAGATCAAGTTTGGGAGCCT+TGG - contig316end:10582-10601 MsG0080048431.01.T01:intergenic 50.0%
CTCTGATGTTGTGGGTTCTG+AGG + contig316end:9464-9483 MsG0080048431.01.T01:CDS 50.0%
GAATCTTCCCACCCTACGAA+AGG - contig316end:7660-7679 MsG0080048431.01.T01:intergenic 50.0%
GAGTCCAGTGTGGTTTGATG+TGG + contig316end:7937-7956 MsG0080048431.01.T01:intron 50.0%
GCTACTGCTGCTGAGAAGAA+TGG + contig316end:10476-10495 MsG0080048431.01.T01:CDS 50.0%
GGTCGTGTGTCTGATACATC+TGG + contig316end:10202-10221 MsG0080048431.01.T01:CDS 50.0%
TACGGTATGAGCCAACACCA+GGG - contig316end:7771-7790 MsG0080048431.01.T01:intergenic 50.0%
TCAATCGAAGGCCTAATGCG+AGG - contig316end:8661-8680 MsG0080048431.01.T01:intergenic 50.0%
TCATACTTTGCAGTTGCCCC+TGG + contig316end:7751-7770 MsG0080048431.01.T01:CDS 50.0%
TCGAGAAGACTGCATCTGCA+GGG + contig316end:9263-9282 MsG0080048431.01.T01:CDS 50.0%
TCGGAGAAAGTCCATGCACA+GGG - contig316end:7864-7883 MsG0080048431.01.T01:intergenic 50.0%
TCTGCAGGGGTCATGTTTGA+TGG + contig316end:9277-9296 MsG0080048431.01.T01:CDS 50.0%
TGAATTGGGTGAGGATCCAG+AGG + contig316end:10123-10142 MsG0080048431.01.T01:CDS 50.0%
TGAGGATCCAGAGGTTGTTG+AGG + contig316end:10132-10151 MsG0080048431.01.T01:CDS 50.0%
TGTGTCTCCTCAACAACCTC+TGG - contig316end:10142-10161 MsG0080048431.01.T01:intergenic 50.0%
TTCCTGGTAGAGAGTCATGG+AGG + contig316end:7417-7436 MsG0080048431.01.T01:CDS 50.0%
! CTGTGCTGTTGTGGAAGGTT+TGG + contig316end:8759-8778 MsG0080048431.01.T01:CDS 50.0%
! CTTCCGAGAGAGAGTACGTT+AGG + contig316end:8042-8061 MsG0080048431.01.T01:CDS 50.0%
! GAGAGAGAGTACGTTAGGGA+TGG + contig316end:8047-8066 MsG0080048431.01.T01:CDS 50.0%
! GCAGTTTGTGTCTGATGGTG+TGG + contig316end:10087-10106 MsG0080048431.01.T01:intron 50.0%
! GCTGTAAGTTTGGCGGATGA+TGG + contig316end:10422-10441 MsG0080048431.01.T01:CDS 50.0%
! GTTGTCTGTGCTGTTGTGGA+AGG + contig316end:8754-8773 MsG0080048431.01.T01:CDS 50.0%
! TGTGGAAGGTTTGGTTGAGG+GGG + contig316end:8768-8787 MsG0080048431.01.T01:CDS 50.0%
!! AGAAGATGATGGGGGAAGCT+GGG + contig316end:8245-8264 MsG0080048431.01.T01:CDS 50.0%
!! TTTGGTTGGTGAGTCCAGTG+TGG + contig316end:7927-7946 MsG0080048431.01.T01:intron 50.0%
ACGGTATGAGCCAACACCAG+GGG - contig316end:7770-7789 MsG0080048431.01.T01:intergenic 55.0%
AGCTGTGGATCCTGGATGTG+AGG + contig316end:10400-10419 MsG0080048431.01.T01:CDS 55.0%
AGGTGCGTGTGCTTAGGATG+TGG + contig316end:7444-7463 MsG0080048431.01.T01:CDS 55.0%
ATCCTGCGCGTCGTTGTCAT+AGG + contig316end:8803-8822 MsG0080048431.01.T01:CDS 55.0%
CACATCCAGGATCCACAGCT+AGG - contig316end:10400-10419 MsG0080048431.01.T01:intergenic 55.0%
CAGCTTCCCCCATCATCTTC+TGG - contig316end:8246-8265 MsG0080048431.01.T01:intergenic 55.0%
CCACACAGTCTCAACCCTAC+AGG - contig316end:10616-10635 MsG0080048431.01.T01:intergenic 55.0%
CCTGTAGGGTTGAGACTGTG+TGG + contig316end:10613-10632 MsG0080048431.01.T01:three_prime_UTR 55.0%
CGAGAAGACTGCATCTGCAG+GGG + contig316end:9264-9283 MsG0080048431.01.T01:CDS 55.0%
CTAATGCGAGGACCAAGCGA+AGG - contig316end:8649-8668 MsG0080048431.01.T01:intergenic 55.0%
CTTCCCACCCTACGAAAGGA+AGG - contig316end:7656-7675 MsG0080048431.01.T01:intergenic 55.0%
CTTCGCTTGGTCCTCGCATT+AGG + contig316end:8647-8666 MsG0080048431.01.T01:CDS 55.0%
GGATCAAGGTGCGTGTGCTT+AGG + contig316end:7438-7457 MsG0080048431.01.T01:CDS 55.0%
GGTGCGTGTGCTTAGGATGT+GGG + contig316end:7445-7464 MsG0080048431.01.T01:CDS 55.0%
GTACGGTATGAGCCAACACC+AGG - contig316end:7772-7791 MsG0080048431.01.T01:intergenic 55.0%
GTATCAGACACACGACCCAC+TGG - contig316end:10199-10218 MsG0080048431.01.T01:intergenic 55.0%
GTCGAGAAGACTGCATCTGC+AGG + contig316end:9262-9281 MsG0080048431.01.T01:CDS 55.0%
GTTTGGTTGAGGGGGAGGAT+TGG + contig316end:8776-8795 MsG0080048431.01.T01:CDS 55.0%
TGCTAAAGAGACACCGGCCA+AGG + contig316end:9515-9534 MsG0080048431.01.T01:CDS 55.0%
TTTGCAGCAGACCCTAGCTG+TGG + contig316end:10385-10404 MsG0080048431.01.T01:intron 55.0%
TTTGCAGTTGCCCCTGGTGT+TGG + contig316end:7757-7776 MsG0080048431.01.T01:CDS 55.0%
! CGCAAGGCATTTGACGCAGT+TGG + contig316end:10527-10546 MsG0080048431.01.T01:CDS 55.0%
! GGAAGGATTGCCGGTTGTTG+TGG + contig316end:8267-8286 MsG0080048431.01.T01:intron 55.0%
!! CAGAAGATGATGGGGGAAGC+TGG + contig316end:8244-8263 MsG0080048431.01.T01:CDS 55.0%
!! GAAGATGATGGGGGAAGCTG+GGG + contig316end:8246-8265 MsG0080048431.01.T01:CDS 55.0%
!! GGGAGCCTTGGTTTTCTTGG+TGG - contig316end:10570-10589 MsG0080048431.01.T01:intergenic 55.0%
CAGACCCTAGCTGTGGATCC+TGG + contig316end:10392-10411 MsG0080048431.01.T01:intron 60.0%
CAGCAGCAGTAGCTCCTGAC+AGG - contig316end:10469-10488 MsG0080048431.01.T01:intergenic 60.0%
CGGTGTGGGCGCAAACTTCT+TGG - contig316end:7894-7913 MsG0080048431.01.T01:intergenic 60.0%
CTCCTATGACAACGACGCGC+AGG - contig316end:8808-8827 MsG0080048431.01.T01:intergenic 60.0%
GCAGTAGCTCCTGACAGGTC+TGG - contig316end:10464-10483 MsG0080048431.01.T01:intergenic 60.0%
GCGTGTGCTTAGGATGTGGG+AGG + contig316end:7448-7467 MsG0080048431.01.T01:CDS 60.0%
GGAAGCTGGGGAAGGATTGC+CGG + contig316end:8258-8277 MsG0080048431.01.T01:CDS 60.0%
TGGTTGAGGGGGAGGATTGG+TGG + contig316end:8779-8798 MsG0080048431.01.T01:CDS 60.0%
! ATGATGGGGGAAGCTGGGGA+AGG + contig316end:8250-8269 MsG0080048431.01.T01:CDS 60.0%
! GGAAGGTTTGGTTGAGGGGG+AGG + contig316end:8771-8790 MsG0080048431.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
contig316end gene 7383 10861 7383 ID=MsG0080048431.01;Name=MsG0080048431.01
contig316end mRNA 7383 10861 7383 ID=MsG0080048431.01.T01;Parent=MsG0080048431.01;Name=MsG0080048431.01.T01;_AED=0.33;_eAED=0.33;_QI=0|0.7|0.54|1|1|1|11|254|553
contig316end exon 7383 7532 7383 ID=MsG0080048431.01.T01:exon:13405;Parent=MsG0080048431.01.T01
contig316end exon 7667 7934 7667 ID=MsG0080048431.01.T01:exon:13406;Parent=MsG0080048431.01.T01
contig316end exon 8015 8085 8015 ID=MsG0080048431.01.T01:exon:13407;Parent=MsG0080048431.01.T01
contig316end exon 8205 8279 8205 ID=MsG0080048431.01.T01:exon:13408;Parent=MsG0080048431.01.T01
contig316end exon 8414 8481 8414 ID=MsG0080048431.01.T01:exon:13409;Parent=MsG0080048431.01.T01
contig316end exon 8609 8896 8609 ID=MsG0080048431.01.T01:exon:13410;Parent=MsG0080048431.01.T01
contig316end exon 8976 9093 8976 ID=MsG0080048431.01.T01:exon:13411;Parent=MsG0080048431.01.T01
contig316end exon 9196 9366 9196 ID=MsG0080048431.01.T01:exon:13412;Parent=MsG0080048431.01.T01
contig316end exon 9459 9536 9459 ID=MsG0080048431.01.T01:exon:13413;Parent=MsG0080048431.01.T01
contig316end exon 10091 10252 10091 ID=MsG0080048431.01.T01:exon:13414;Parent=MsG0080048431.01.T01
contig316end exon 10395 10861 10395 ID=MsG0080048431.01.T01:exon:13415;Parent=MsG0080048431.01.T01
contig316end CDS 7383 7532 7383 ID=MsG0080048431.01.T01:cds;Parent=MsG0080048431.01.T01
contig316end CDS 7667 7934 7667 ID=MsG0080048431.01.T01:cds;Parent=MsG0080048431.01.T01
contig316end CDS 8015 8085 8015 ID=MsG0080048431.01.T01:cds;Parent=MsG0080048431.01.T01
contig316end CDS 8205 8279 8205 ID=MsG0080048431.01.T01:cds;Parent=MsG0080048431.01.T01
contig316end CDS 8414 8481 8414 ID=MsG0080048431.01.T01:cds;Parent=MsG0080048431.01.T01
contig316end CDS 8609 8896 8609 ID=MsG0080048431.01.T01:cds;Parent=MsG0080048431.01.T01
contig316end CDS 8976 9093 8976 ID=MsG0080048431.01.T01:cds;Parent=MsG0080048431.01.T01
contig316end CDS 9196 9366 9196 ID=MsG0080048431.01.T01:cds;Parent=MsG0080048431.01.T01
contig316end CDS 9459 9536 9459 ID=MsG0080048431.01.T01:cds;Parent=MsG0080048431.01.T01
contig316end CDS 10091 10252 10091 ID=MsG0080048431.01.T01:cds;Parent=MsG0080048431.01.T01
contig316end CDS 10395 10607 10395 ID=MsG0080048431.01.T01:cds;Parent=MsG0080048431.01.T01
contig316end three_prime_UTR 10608 10861 10608 ID=MsG0080048431.01.T01:three_prime_utr;Parent=MsG0080048431.01.T01
Gene Sequence

>MsG0080048431.01.T01

ATGGATAAATCCATTGATTGTTTGTGTGATATTGTTCCTGGTAGAGAGTCATGGAGGATCAAGGTGCGTGTGCTTAGGATGTGGGAGGTCCCAACCTTTTTGAAACCTGATCAGGCTAACTCTGTTGAGATGGTTTTGATTGATGAGAAGGGTGGGAAGATTCATGCCACCATTAGAAGGCAATTGTTGTATGTTTTTCAGAAGAAGTTGGTAGAAGGAGGAGTGTACAAGATGTCATACTTTGCAGTTGCCCCTGGTGTTGGCTCATACCGTACTACCATTCATCCATATAAGCTGATATTTCAAATGAAGACAAAGGTGGAGAGGGTTGAGAGTTCACTTATCCCTGTGCATGGACTTTCTCCGATTAAGATCCAAGAAGTTTGCGCCCACACCGCTGATTATGATTATTTGGTTGATGTTGTTGGTTTGATGACTGGGATTTCTTCCGAGAGAGAGTACGTTAGGGATGGAAAGGTTACTAAGATGGTTGAGTGTGCGTTGTTTGGAAGCTATGTTGATTCTCTCCAGAAGATGATGGGGGAAGCTGGGGAAGGATTGCCGAATGTTATGAACACGACTAGAATTTGGGTGAATCCTCCTTTTGAAGAGGCTGTGAAATTTAGAGAAGGTGTTGCAATCCATGGCATTGAACCTTCTAGTGTTGTTCCTTCGCTTGGTCCTCGCATTAGGCCTTCGATTGAAGAGGATTTCTTGCGTAATCACCCCAAGAAAAATATCTATGAGTTGAATGCCATTGTGGAGGATGGGATTTATGTTGTCTGTGCTGTTGTGGAAGGTTTGGTTGAGGGGGAGGATTGGTGGTATCCTGCGCGTCGTTGTCATAGGAGTGTTACTCCTGATTCTGGTGCATATTACTGCAAGGGGTGTGTGAAGCATGTGTTCCATATGGTTCCAAGGTATAAGGTGAAGCTCAGTGTGAGAGATTCTACATCAGATGCAGTGTTTGTGATGTTTGATGGTGACATGCAACTGTTTCTTGGTGAGCAGTGTAGCGACTTAGTTTCTGCAGCCAAAACTGAAAATGCTGGATTTTATCCTCCTGAGATTGTTAGTTTGAAGGGAAGGATGATGTTGTTTAAGGTCGAGAAGACTGCATCTGCAGGGGTCATGTTTGATGGATCTTATAGGGTGAAGAGGGTTTGTGTTGATCCATCTATTGTTGAGGAATTCTGCACTTCTGTCAAGTTTTTCTCTGATGTTGTGGGTTCTGAGGTTAGTGATTTGGTAGAGGATCTGGATGTTGCTAAAGAGACACCGGCCAAGTTTGTGTCTGATGGTGTGGATGCTGAGTTGAGTGAATTGGGTGAGGATCCAGAGGTTGTTGAGGAGACACAAATTGAGGATTTCGTGGCTAATGTTGTTGTTACTCCAGTGGGTCGTGTGTCTGATACATCTGGGTATGAAAATACTGCTCCAGTTCTTAAGACCCTAGCTGTGGATCCTGGATGTGAGGCTGTAAGTTTGGCGGATGATGGTACTGTCTTTAAAAGTCCAGACCTGTCAGGAGCTACTGCTGCTGAGAAGAATGGGGCTGTCAACAAAGCTAAGAGAAATTTGCGCAAGGCATTTGACGCAGTTGGTCGTGACAAGTCCACTACCACCAAGAAAACCAAGGCTCCCAAACTTGATCTGGATTGA

Protein sequence

>MsG0080048431.01.T01

MDKSIDCLCDIVPGRESWRIKVRVLRMWEVPTFLKPDQANSVEMVLIDEKGGKIHATIRRQLLYVFQKKLVEGGVYKMSYFAVAPGVGSYRTTIHPYKLIFQMKTKVERVESSLIPVHGLSPIKIQEVCAHTADYDYLVDVVGLMTGISSEREYVRDGKVTKMVECALFGSYVDSLQKMMGEAGEGLPNVMNTTRIWVNPPFEEAVKFREGVAIHGIEPSSVVPSLGPRIRPSIEEDFLRNHPKKNIYELNAIVEDGIYVVCAVVEGLVEGEDWWYPARRCHRSVTPDSGAYYCKGCVKHVFHMVPRYKVKLSVRDSTSDAVFVMFDGDMQLFLGEQCSDLVSAAKTENAGFYPPEIVSLKGRMMLFKVEKTASAGVMFDGSYRVKRVCVDPSIVEEFCTSVKFFSDVVGSEVSDLVEDLDVAKETPAKFVSDGVDAELSELGEDPEVVEETQIEDFVANVVVTPVGRVSDTSGYENTAPVLKTLAVDPGCEAVSLADDGTVFKSPDLSGATAAEKNGAVNKAKRNLRKAFDAVGRDKSTTTKKTKAPKLDLD*