AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780036609.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780036609.01.T01 MTR_7g015100 96.345 383 14 0 1 383 1 383 0.0 762
MsG0780036609.01.T01 MTR_1g102590 34.646 381 186 8 19 383 21 354 6.82e-66 213
MsG0780036609.01.T01 MTR_3g080510 35.754 179 107 2 30 200 41 219 2.51e-28 113
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780036609.01.T01 AT4G34340 38.268 358 188 9 30 383 25 353 9.73e-63 205
MsG0780036609.01.T01 AT3G02160 37.018 389 202 11 1 369 17 382 3.33e-61 202
MsG0780036609.01.T01 AT3G02160 37.018 389 202 11 1 369 17 382 3.33e-61 202
MsG0780036609.01.T01 AT5G15570 32.653 392 222 9 1 372 1 370 1.04e-55 187
MsG0780036609.01.T01 AT1G31240 31.447 159 91 4 30 176 25 177 2.47e-17 81.6

Find 98 sgRNAs with CRISPR-Local

Find 117 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTAGACTGCAAATAAGTTTC+TGG 0.241510 7:-10529617 None:intergenic
CTGTTAATTGCTTCAATTGC+TGG 0.264368 7:-10529971 None:intergenic
CATTCAAGGGTTAGAAGATA+TGG 0.284263 7:+10529364 MsG0780036609.01.T01:CDS
TTTGAGCATGAAAGAGAAAA+TGG 0.289815 7:+10529680 MsG0780036609.01.T01:CDS
TGGAAGATTCGGGTGTTGTT+AGG 0.296812 7:+10529432 MsG0780036609.01.T01:CDS
TGCAAATAAGTTTCTGGATC+TGG 0.298107 7:-10529611 None:intergenic
GGGTCGATGCAGGGGTTTAC+AGG 0.315837 7:+10529386 MsG0780036609.01.T01:CDS
TTCCTCCTCCATGTGGTGTT+AGG 0.324706 7:-10529134 None:intergenic
TACAACTGAACAAGCTGATC+TGG 0.339194 7:-10530217 None:intergenic
TGATCACTGGCTGGAAGATT+CGG 0.342375 7:+10529421 MsG0780036609.01.T01:CDS
AGAAGATATGGGGTCGATGC+AGG 0.364688 7:+10529376 MsG0780036609.01.T01:CDS
AATTGTTATGCTAATCTTGC+TGG 0.386896 7:+10529314 MsG0780036609.01.T01:CDS
AGCGCAAGTATGCGAGAGTA+AGG 0.398422 7:+10529208 MsG0780036609.01.T01:CDS
ACAACCGGAAACGGAGGAAT+CGG 0.405532 7:-10529503 None:intergenic
GCCTCCTGATGAGCATATTC+CGG 0.414106 7:+10529571 MsG0780036609.01.T01:CDS
ATCTTTGCCTTAGCAACTGC+AGG 0.414992 7:-10529779 None:intergenic
GATCACTGGCTGGAAGATTC+GGG 0.423694 7:+10529422 MsG0780036609.01.T01:CDS
AGCACACGTTCTTTCACAAC+CGG 0.426319 7:-10529518 None:intergenic
CGTTCTTTCACAACCGGAAA+CGG 0.426775 7:-10529512 None:intergenic
GTTTGTTAATGAGGCTGAAC+CGG 0.428268 7:+10529466 MsG0780036609.01.T01:CDS
TTGCAGTCTACTACGGTGAA+TGG 0.434590 7:+10529629 MsG0780036609.01.T01:CDS
CTCGGTATATTATGAACATT+GGG 0.445223 7:+10529282 MsG0780036609.01.T01:CDS
ACACCCGATTCCTCCGTTTC+CGG 0.449315 7:+10529499 MsG0780036609.01.T01:CDS
CATGCCGGAATATGCTCATC+AGG 0.452423 7:-10529575 None:intergenic
ATTCAAGGGTTAGAAGATAT+GGG 0.455691 7:+10529365 MsG0780036609.01.T01:CDS
CTGATCTTCCTTGGAATCAC+AGG 0.456719 7:-10529999 None:intergenic
AGCAATGGCAATGGGAAGAC+TGG 0.457562 7:+10529092 MsG0780036609.01.T01:CDS
ATCGGGTGTGCAAAGATAAC+CGG 0.459366 7:-10529485 None:intergenic
ACATTATTAAAGAATTTAGC+TGG 0.459746 7:-10529878 None:intergenic
GGAAGATTCGGGTGTTGTTA+GGG 0.459880 7:+10529433 MsG0780036609.01.T01:CDS
AATTGTTCAGTTTGTTAATG+AGG 0.463759 7:+10529457 MsG0780036609.01.T01:CDS
ACCTTTGAAAATCGAGGATA+AGG 0.464126 7:+10529835 MsG0780036609.01.T01:CDS
GCAAATAAGTTTCTGGATCT+GGG 0.468046 7:-10529610 None:intergenic
AAATTCTTAGGAAGGTCAAT+TGG 0.468574 7:+10530079 MsG0780036609.01.T01:CDS
TCAAAGGTGCAGCAAGGAAA+GGG 0.483213 7:-10529820 None:intergenic
TTCTCTTTCATGCTCAAATG+TGG 0.493502 7:-10529675 None:intergenic
ACAGTAGGTTTCTCTTTCAC+AGG 0.495987 7:-10530031 None:intergenic
ATTAAAGAATTTAGCTGGAG+GGG 0.500157 7:-10529873 None:intergenic
GCTCGGTATATTATGAACAT+TGG 0.501430 7:+10529281 MsG0780036609.01.T01:CDS
TTCAAAGGTGCAGCAAGGAA+AGG 0.505441 7:-10529821 None:intergenic
GACTTTGCCGTGGTTTGCGA+TGG 0.512129 7:+10530132 MsG0780036609.01.T01:CDS
AGAAGGATGACAGGAAAAGA+AGG 0.514396 7:+10530161 MsG0780036609.01.T01:CDS
ACAACTGAACAAGCTGATCT+GGG 0.515730 7:-10530216 None:intergenic
TGCTTCAATTGCTGGAGCAA+AGG 0.519696 7:-10529963 None:intergenic
GTTTCTGGATCTGGGAATGC+AGG 0.522357 7:-10529602 None:intergenic
ATTTGCACAATCTATTGCTA+AGG 0.522859 7:+10529178 MsG0780036609.01.T01:CDS
AACTTATTTGCAGTCTACTA+CGG 0.528437 7:+10529622 MsG0780036609.01.T01:CDS
CAACCGGAAACGGAGGAATC+GGG 0.529236 7:-10529502 None:intergenic
ATTTCAGCAGTCGGCACTTG+AGG 0.533229 7:+10529241 MsG0780036609.01.T01:CDS
TCTTTCATGCTCAAATGTGG+TGG 0.534234 7:-10529672 None:intergenic
GGTTGACCCTGCAGTTGCTA+AGG 0.536793 7:+10529772 MsG0780036609.01.T01:CDS
GAAGATATGGGGTCGATGCA+GGG 0.539421 7:+10529377 MsG0780036609.01.T01:CDS
TCTACTACGGTGAATGGAAG+AGG 0.539817 7:+10529635 MsG0780036609.01.T01:CDS
GGGAATGCAGGCAACCATGC+CGG 0.545485 7:-10529590 None:intergenic
CAGTGCATCCTGTGATTCCA+AGG 0.552165 7:+10529991 MsG0780036609.01.T01:CDS
TGGAAGACGAGAAGGATGAC+AGG 0.552952 7:+10530152 MsG0780036609.01.T01:CDS
AGGAGGAAGAAAGTGGGTGG+TGG 0.558907 7:+10529149 MsG0780036609.01.T01:CDS
TGCTGCTGTGAATTCAAAAG+AGG 0.559333 7:-10529716 None:intergenic
TGCTGCACCTTTGAAAATCG+AGG 0.560841 7:+10529829 MsG0780036609.01.T01:CDS
CACTTTCTTCCTCCTCCATG+TGG 0.568483 7:-10529141 None:intergenic
TATTAAAGAATTTAGCTGGA+GGG 0.569693 7:-10529874 None:intergenic
CTGAATATGAGCAATGGCAA+TGG 0.574328 7:+10529083 None:intergenic
TTTGAATTCACAGCAGCACA+TGG 0.575047 7:+10529721 MsG0780036609.01.T01:CDS
AATTTAGTTCAAAATGAACC+TGG 0.577666 7:+10529926 MsG0780036609.01.T01:CDS
TGAATATGAGCAATGGCAAT+GGG 0.579503 7:+10529084 None:intergenic
ATGAAAGAGAAAATGGCAAG+GGG 0.579675 7:+10529687 MsG0780036609.01.T01:CDS
TTCAGATATTGATCACTGGC+TGG 0.579893 7:+10529412 MsG0780036609.01.T01:CDS
AAGATATGGGGTCGATGCAG+GGG 0.587409 7:+10529378 MsG0780036609.01.T01:CDS
GTGCTTCAGATATTGATCAC+TGG 0.588992 7:+10529408 MsG0780036609.01.T01:CDS
GAAGGATGACAGGAAAAGAA+GGG 0.590614 7:+10530162 MsG0780036609.01.T01:CDS
TGCTCAAATGTGGTGGTACG+AGG 0.598822 7:-10529665 None:intergenic
CACATGGAGGAGGAAGAAAG+TGG 0.601802 7:+10529142 MsG0780036609.01.T01:CDS
AGCCTAACACCACATGGAGG+AGG 0.608643 7:+10529132 MsG0780036609.01.T01:CDS
GTTTGCGATGGAAGACGAGA+AGG 0.609541 7:+10530144 MsG0780036609.01.T01:CDS
CAATGTCTGATGTTACTGCT+CGG 0.615655 7:+10529264 MsG0780036609.01.T01:CDS
TCTTTCACAACCGGAAACGG+AGG 0.621110 7:-10529509 None:intergenic
CATGAAAGAGAAAATGGCAA+GGG 0.622571 7:+10529686 MsG0780036609.01.T01:CDS
AAGGTCTCTAATACTGAACC+AGG 0.625601 7:-10529944 None:intergenic
CCAACCTTAAAACGTACAGT+AGG 0.627191 7:-10530046 None:intergenic
GCGCAAGTATGCGAGAGTAA+GGG 0.628011 7:+10529209 MsG0780036609.01.T01:CDS
CTGATGAGCATATTCCGGCA+TGG 0.628590 7:+10529576 MsG0780036609.01.T01:CDS
AACAACAGCCTAACACCACA+TGG 0.631098 7:+10529126 MsG0780036609.01.T01:CDS
AGCAACTGCAGGGTCAACCA+TGG 0.649507 7:-10529768 None:intergenic
TTCAAGGGTTAGAAGATATG+GGG 0.654625 7:+10529366 MsG0780036609.01.T01:CDS
CTACTACGGTGAATGGAAGA+GGG 0.654716 7:+10529636 MsG0780036609.01.T01:CDS
TCTTTGCCTTAGCAACTGCA+GGG 0.654727 7:-10529778 None:intergenic
GCATGAAAGAGAAAATGGCA+AGG 0.663461 7:+10529685 MsG0780036609.01.T01:CDS
TTATTAAAGAATTTAGCTGG+AGG 0.669528 7:-10529875 None:intergenic
GCCGGAATATGCTCATCAGG+AGG 0.672120 7:-10529572 None:intergenic
GAAGTGCTGAATATGAGCAA+TGG 0.677775 7:+10529077 None:intergenic
ACATGGAGGAGGAAGAAAGT+GGG 0.687005 7:+10529143 MsG0780036609.01.T01:CDS
TCGTCTTCCATCGCAAACCA+CGG 0.690094 7:-10530139 None:intergenic
TGGAGGAGGAAGAAAGTGGG+TGG 0.692123 7:+10529146 MsG0780036609.01.T01:CDS
AGCATGCAAAGACTTTGCCG+TGG 0.700393 7:+10530122 MsG0780036609.01.T01:CDS
AACTGCAGGGTCAACCATGG+TGG 0.704928 7:-10529765 None:intergenic
TATGTTTGAGAACTCCACCA+TGG 0.713816 7:+10529751 MsG0780036609.01.T01:CDS
TGAAAGAGAAAATGGCAAGG+GGG 0.750807 7:+10529688 MsG0780036609.01.T01:CDS
AACAGCCTAACACCACATGG+AGG 0.752752 7:+10529129 MsG0780036609.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACATTATTAAAGAATTTAGC+TGG - Chr7:10529881-10529900 None:intergenic 20.0%
!! CTAAAAATAAATTCTTAGGA+AGG + Chr7:10530071-10530090 MsG0780036609.01.T01:CDS 20.0%
! GGGACTAAAAATAAATTCTT+AGG + Chr7:10530067-10530086 MsG0780036609.01.T01:CDS 25.0%
! TATTAAAGAATTTAGCTGGA+GGG - Chr7:10529877-10529896 None:intergenic 25.0%
! TTATTAAAGAATTTAGCTGG+AGG - Chr7:10529878-10529897 None:intergenic 25.0%
!! AATTTAGTTCAAAATGAACC+TGG + Chr7:10529926-10529945 MsG0780036609.01.T01:CDS 25.0%
!! TGAACTAAATTTTCTACAAC+TGG - Chr7:10529917-10529936 None:intergenic 25.0%
!!! AATGTTTTTGATGTCATTCA+AGG + Chr7:10529350-10529369 MsG0780036609.01.T01:CDS 25.0%
!!! AATTGTTCAGTTTGTTAATG+AGG + Chr7:10529457-10529476 MsG0780036609.01.T01:CDS 25.0%
!!! ATGTTTTTGATGTCATTCAA+GGG + Chr7:10529351-10529370 MsG0780036609.01.T01:CDS 25.0%
AAATTCTTAGGAAGGTCAAT+TGG + Chr7:10530079-10530098 MsG0780036609.01.T01:CDS 30.0%
AACTTATTTGCAGTCTACTA+CGG + Chr7:10529622-10529641 MsG0780036609.01.T01:CDS 30.0%
AATTGTTATGCTAATCTTGC+TGG + Chr7:10529314-10529333 MsG0780036609.01.T01:CDS 30.0%
ATTAAAGAATTTAGCTGGAG+GGG - Chr7:10529876-10529895 None:intergenic 30.0%
ATTCAAGGGTTAGAAGATAT+GGG + Chr7:10529365-10529384 MsG0780036609.01.T01:CDS 30.0%
ATTTGCACAATCTATTGCTA+AGG + Chr7:10529178-10529197 MsG0780036609.01.T01:CDS 30.0%
CTCGGTATATTATGAACATT+GGG + Chr7:10529282-10529301 MsG0780036609.01.T01:CDS 30.0%
TTTGAGCATGAAAGAGAAAA+TGG + Chr7:10529680-10529699 MsG0780036609.01.T01:CDS 30.0%
! AAATTTTGTCTGATCTTCCT+TGG - Chr7:10530011-10530030 None:intergenic 30.0%
! AGATTCCCTCAAAATTTTCT+CGG - Chr7:10530188-10530207 None:intergenic 30.0%
!! GAAAATTTTGAGGGAATCTT+TGG + Chr7:10530189-10530208 MsG0780036609.01.T01:CDS 30.0%
ATGAAAGAGAAAATGGCAAG+GGG + Chr7:10529687-10529706 MsG0780036609.01.T01:CDS 35.0%
CATGAAAGAGAAAATGGCAA+GGG + Chr7:10529686-10529705 MsG0780036609.01.T01:CDS 35.0%
CATTCAAGGGTTAGAAGATA+TGG + Chr7:10529364-10529383 MsG0780036609.01.T01:CDS 35.0%
CTGTTAATTGCTTCAATTGC+TGG - Chr7:10529974-10529993 None:intergenic 35.0%
GCTCGGTATATTATGAACAT+TGG + Chr7:10529281-10529300 MsG0780036609.01.T01:CDS 35.0%
GTAGACTGCAAATAAGTTTC+TGG - Chr7:10529620-10529639 None:intergenic 35.0%
TCTCGTCTTTGCAAAAAACT+GGG - Chr7:10529548-10529567 None:intergenic 35.0%
TGGTTTGATTCCACAAAAAG+AGG + Chr7:10530099-10530118 MsG0780036609.01.T01:CDS 35.0%
TTCAAGGGTTAGAAGATATG+GGG + Chr7:10529366-10529385 MsG0780036609.01.T01:CDS 35.0%
TTCTCGTCTTTGCAAAAAAC+TGG - Chr7:10529549-10529568 None:intergenic 35.0%
TTCTCTTTCATGCTCAAATG+TGG - Chr7:10529678-10529697 None:intergenic 35.0%
! ACCTTTGAAAATCGAGGATA+AGG + Chr7:10529835-10529854 MsG0780036609.01.T01:CDS 35.0%
! GAAACCTACTGTACGTTTTA+AGG + Chr7:10530042-10530061 MsG0780036609.01.T01:CDS 35.0%
! GCAAATAAGTTTCTGGATCT+GGG - Chr7:10529613-10529632 None:intergenic 35.0%
! TCCTTATCCTCGATTTTCAA+AGG - Chr7:10529839-10529858 None:intergenic 35.0%
! TGCAAATAAGTTTCTGGATC+TGG - Chr7:10529614-10529633 None:intergenic 35.0%
!! TTTTCAAGGATTTCAGCAGT+CGG + Chr7:10529232-10529251 MsG0780036609.01.T01:CDS 35.0%
!!! CTACTGTACGTTTTAAGGTT+GGG + Chr7:10530047-10530066 MsG0780036609.01.T01:CDS 35.0%
AAGGTCTCTAATACTGAACC+AGG - Chr7:10529947-10529966 None:intergenic 40.0%
ACAACTGAACAAGCTGATCT+GGG - Chr7:10530219-10530238 None:intergenic 40.0%
ACAGTAGGTTTCTCTTTCAC+AGG - Chr7:10530034-10530053 None:intergenic 40.0%
AGAAGGATGACAGGAAAAGA+AGG + Chr7:10530161-10530180 MsG0780036609.01.T01:CDS 40.0%
CAATGTCTGATGTTACTGCT+CGG + Chr7:10529264-10529283 MsG0780036609.01.T01:CDS 40.0%
CCAACCTTAAAACGTACAGT+AGG - Chr7:10530049-10530068 None:intergenic 40.0%
GAAGGATGACAGGAAAAGAA+GGG + Chr7:10530162-10530181 MsG0780036609.01.T01:CDS 40.0%
GCATGAAAGAGAAAATGGCA+AGG + Chr7:10529685-10529704 MsG0780036609.01.T01:CDS 40.0%
GTGCTTCAGATATTGATCAC+TGG + Chr7:10529408-10529427 MsG0780036609.01.T01:CDS 40.0%
TACAACTGAACAAGCTGATC+TGG - Chr7:10530220-10530239 None:intergenic 40.0%
TATGTTTGAGAACTCCACCA+TGG + Chr7:10529751-10529770 MsG0780036609.01.T01:CDS 40.0%
TCTTTCATGCTCAAATGTGG+TGG - Chr7:10529675-10529694 None:intergenic 40.0%
TGAAAGAGAAAATGGCAAGG+GGG + Chr7:10529688-10529707 MsG0780036609.01.T01:CDS 40.0%
TGCTGCTGTGAATTCAAAAG+AGG - Chr7:10529719-10529738 None:intergenic 40.0%
TTCAGATATTGATCACTGGC+TGG + Chr7:10529412-10529431 MsG0780036609.01.T01:CDS 40.0%
TTTGAATTCACAGCAGCACA+TGG + Chr7:10529721-10529740 MsG0780036609.01.T01:CDS 40.0%
! AAGGGCCGAGAAAATTTTGA+GGG + Chr7:10530180-10530199 MsG0780036609.01.T01:CDS 40.0%
! GTTTGTTAATGAGGCTGAAC+CGG + Chr7:10529466-10529485 MsG0780036609.01.T01:CDS 40.0%
! TTTGCATGCTCCTCTTTTTG+TGG - Chr7:10530112-10530131 None:intergenic 40.0%
!!! CCTACTGTACGTTTTAAGGT+TGG + Chr7:10530046-10530065 MsG0780036609.01.T01:CDS 40.0%
AACAACAGCCTAACACCACA+TGG + Chr7:10529126-10529145 MsG0780036609.01.T01:CDS 45.0%
ACATGGAGGAGGAAGAAAGT+GGG + Chr7:10529143-10529162 MsG0780036609.01.T01:CDS 45.0%
AGCACACGTTCTTTCACAAC+CGG - Chr7:10529521-10529540 None:intergenic 45.0%
ATCGGGTGTGCAAAGATAAC+CGG - Chr7:10529488-10529507 None:intergenic 45.0%
ATCTTTGCCTTAGCAACTGC+AGG - Chr7:10529782-10529801 None:intergenic 45.0%
CGTCTTTGCAAAAAACTGGG+AGG - Chr7:10529545-10529564 None:intergenic 45.0%
CGTTCTTTCACAACCGGAAA+CGG - Chr7:10529515-10529534 None:intergenic 45.0%
CTACTACGGTGAATGGAAGA+GGG + Chr7:10529636-10529655 MsG0780036609.01.T01:CDS 45.0%
CTGATCTTCCTTGGAATCAC+AGG - Chr7:10530002-10530021 None:intergenic 45.0%
TCTACTACGGTGAATGGAAG+AGG + Chr7:10529635-10529654 MsG0780036609.01.T01:CDS 45.0%
TCTTTGCCTTAGCAACTGCA+GGG - Chr7:10529781-10529800 None:intergenic 45.0%
TGCTTCAATTGCTGGAGCAA+AGG - Chr7:10529966-10529985 None:intergenic 45.0%
TTGCAGTCTACTACGGTGAA+TGG + Chr7:10529629-10529648 MsG0780036609.01.T01:CDS 45.0%
! GAAGGGCCGAGAAAATTTTG+AGG + Chr7:10530179-10530198 MsG0780036609.01.T01:CDS 45.0%
! TCAAAGGTGCAGCAAGGAAA+GGG - Chr7:10529823-10529842 None:intergenic 45.0%
! TGATCACTGGCTGGAAGATT+CGG + Chr7:10529421-10529440 MsG0780036609.01.T01:CDS 45.0%
! TGCGAGAGTAAGGGTTTTCA+AGG + Chr7:10529218-10529237 MsG0780036609.01.T01:CDS 45.0%
! TGCTGCACCTTTGAAAATCG+AGG + Chr7:10529829-10529848 MsG0780036609.01.T01:CDS 45.0%
! TTCAAAGGTGCAGCAAGGAA+AGG - Chr7:10529824-10529843 None:intergenic 45.0%
!! CGATTTTCAAAGGTGCAGCA+AGG - Chr7:10529829-10529848 None:intergenic 45.0%
!! GGAAGATTCGGGTGTTGTTA+GGG + Chr7:10529433-10529452 MsG0780036609.01.T01:CDS 45.0%
!! TGGAAGATTCGGGTGTTGTT+AGG + Chr7:10529432-10529451 MsG0780036609.01.T01:CDS 45.0%
AACAGCCTAACACCACATGG+AGG + Chr7:10529129-10529148 MsG0780036609.01.T01:CDS 50.0%
AAGATATGGGGTCGATGCAG+GGG + Chr7:10529378-10529397 MsG0780036609.01.T01:CDS 50.0%
ACAACCGGAAACGGAGGAAT+CGG - Chr7:10529506-10529525 None:intergenic 50.0%
AGAAGATATGGGGTCGATGC+AGG + Chr7:10529376-10529395 MsG0780036609.01.T01:CDS 50.0%
AGCAATGGCAATGGGAAGAC+TGG + Chr7:10529092-10529111 MsG0780036609.01.T01:CDS 50.0%
AGCATGCAAAGACTTTGCCG+TGG + Chr7:10530122-10530141 MsG0780036609.01.T01:CDS 50.0%
AGCGCAAGTATGCGAGAGTA+AGG + Chr7:10529208-10529227 MsG0780036609.01.T01:CDS 50.0%
ATTTCAGCAGTCGGCACTTG+AGG + Chr7:10529241-10529260 MsG0780036609.01.T01:CDS 50.0%
CACATGGAGGAGGAAGAAAG+TGG + Chr7:10529142-10529161 MsG0780036609.01.T01:CDS 50.0%
CACTTTCTTCCTCCTCCATG+TGG - Chr7:10529144-10529163 None:intergenic 50.0%
CAGTGCATCCTGTGATTCCA+AGG + Chr7:10529991-10530010 MsG0780036609.01.T01:CDS 50.0%
CATGCCGGAATATGCTCATC+AGG - Chr7:10529578-10529597 None:intergenic 50.0%
CTGATGAGCATATTCCGGCA+TGG + Chr7:10529576-10529595 MsG0780036609.01.T01:CDS 50.0%
GAAGATATGGGGTCGATGCA+GGG + Chr7:10529377-10529396 MsG0780036609.01.T01:CDS 50.0%
GCCTCCTGATGAGCATATTC+CGG + Chr7:10529571-10529590 MsG0780036609.01.T01:CDS 50.0%
GCGCAAGTATGCGAGAGTAA+GGG + Chr7:10529209-10529228 MsG0780036609.01.T01:CDS 50.0%
GTTTGCGATGGAAGACGAGA+AGG + Chr7:10530144-10530163 MsG0780036609.01.T01:CDS 50.0%
TCGTCTTCCATCGCAAACCA+CGG - Chr7:10530142-10530161 None:intergenic 50.0%
TCTTTCACAACCGGAAACGG+AGG - Chr7:10529512-10529531 None:intergenic 50.0%
TGCTCAAATGTGGTGGTACG+AGG - Chr7:10529668-10529687 None:intergenic 50.0%
TGGAAGACGAGAAGGATGAC+AGG + Chr7:10530152-10530171 MsG0780036609.01.T01:CDS 50.0%
TTCCTCCTCCATGTGGTGTT+AGG - Chr7:10529137-10529156 None:intergenic 50.0%
! GATCACTGGCTGGAAGATTC+GGG + Chr7:10529422-10529441 MsG0780036609.01.T01:CDS 50.0%
! GTTTCTGGATCTGGGAATGC+AGG - Chr7:10529605-10529624 None:intergenic 50.0%
AACTGCAGGGTCAACCATGG+TGG - Chr7:10529768-10529787 None:intergenic 55.0%
ACACCCGATTCCTCCGTTTC+CGG + Chr7:10529499-10529518 MsG0780036609.01.T01:CDS 55.0%
AGCAACTGCAGGGTCAACCA+TGG - Chr7:10529771-10529790 None:intergenic 55.0%
AGCCTAACACCACATGGAGG+AGG + Chr7:10529132-10529151 MsG0780036609.01.T01:CDS 55.0%
AGGAGGAAGAAAGTGGGTGG+TGG + Chr7:10529149-10529168 MsG0780036609.01.T01:CDS 55.0%
CAACCGGAAACGGAGGAATC+GGG - Chr7:10529505-10529524 None:intergenic 55.0%
GCCGGAATATGCTCATCAGG+AGG - Chr7:10529575-10529594 None:intergenic 55.0%
GGTTGACCCTGCAGTTGCTA+AGG + Chr7:10529772-10529791 MsG0780036609.01.T01:CDS 55.0%
TGGAGGAGGAAGAAAGTGGG+TGG + Chr7:10529146-10529165 MsG0780036609.01.T01:CDS 55.0%
! GACTTTGCCGTGGTTTGCGA+TGG + Chr7:10530132-10530151 MsG0780036609.01.T01:CDS 55.0%
GGGAATGCAGGCAACCATGC+CGG - Chr7:10529593-10529612 None:intergenic 60.0%
GGGTCGATGCAGGGGTTTAC+AGG + Chr7:10529386-10529405 MsG0780036609.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr7 gene 10529089 10530240 10529089 ID=MsG0780036609.01;Name=MsG0780036609.01
Chr7 mRNA 10529089 10530240 10529089 ID=MsG0780036609.01.T01;Parent=MsG0780036609.01;Name=MsG0780036609.01.T01;_AED=0.30;_eAED=0.30;_QI=0|-1|0|1|-1|1|1|0|383
Chr7 exon 10529089 10530240 10529089 ID=MsG0780036609.01.T01:exon:10466;Parent=MsG0780036609.01.T01
Chr7 CDS 10529089 10530240 10529089 ID=MsG0780036609.01.T01:cds;Parent=MsG0780036609.01.T01
Gene Sequence

>MsG0780036609.01.T01

ATGAGCAATGGCAATGGGAAGACTGGAAAACAGATTGAACAACAGCCTAACACCACATGGAGGAGGAAGAAAGTGGGTGGTGGTGATGAATTTGCACAATCTATTGCTAAGGTTGCAGTAGCGCAAGTATGCGAGAGTAAGGGTTTTCAAGGATTTCAGCAGTCGGCACTTGAGGCAATGTCTGATGTTACTGCTCGGTATATTATGAACATTGGGAAGTCTGCGAATTGTTATGCTAATCTTGCTGGTAGAAATGAATGCAATGTTTTTGATGTCATTCAAGGGTTAGAAGATATGGGGTCGATGCAGGGGTTTACAGGTGCTTCAGATATTGATCACTGGCTGGAAGATTCGGGTGTTGTTAGGGAAATTGTTCAGTTTGTTAATGAGGCTGAACCGGTTATCTTTGCACACCCGATTCCTCCGTTTCCGGTTGTGAAAGAACGTGTGCTGCCTCCCAGTTTTTTGCAAAGACGAGAAGAGCCTCCTGATGAGCATATTCCGGCATGGTTGCCTGCATTCCCAGATCCAGAAACTTATTTGCAGTCTACTACGGTGAATGGAAGAGGGACAGAGCCTCGTACCACCACATTTGAGCATGAAAGAGAAAATGGCAAGGGGGATCAGCCTCTTTTGAATTCACAGCAGCACATGGTCTCAACTATGTTTGAGAACTCCACCATGGTTGACCCTGCAGTTGCTAAGGCAAAGATTGTAGCAGCAGAAAGTAACCCTTTCCTTGCTGCACCTTTGAAAATCGAGGATAAGGAAGTTTCTTCTGTTGCCCCTCCAGCTAAATTCTTTAATAATGTTTCTTCTGATATTCCAGTTGTAGAAAATTTAGTTCAAAATGAACCTGGTTCAGTATTAGAGACCTTTGCTCCAGCAATTGAAGCAATTAACAGTGCATCCTGTGATTCCAAGGAAGATCAGACAAAATTTCCTGTGAAAGAGAAACCTACTGTACGTTTTAAGGTTGGGACTAAAAATAAATTCTTAGGAAGGTCAATTGGTTTGATTCCACAAAAAGAGGAGCATGCAAAGACTTTGCCGTGGTTTGCGATGGAAGACGAGAAGGATGACAGGAAAAGAAGGGCCGAGAAAATTTTGAGGGAATCTTTGGAAAACCCAGATCAGCTTGTTCAGTTGTAA

Protein sequence

>MsG0780036609.01.T01

MSNGNGKTGKQIEQQPNTTWRRKKVGGGDEFAQSIAKVAVAQVCESKGFQGFQQSALEAMSDVTARYIMNIGKSANCYANLAGRNECNVFDVIQGLEDMGSMQGFTGASDIDHWLEDSGVVREIVQFVNEAEPVIFAHPIPPFPVVKERVLPPSFLQRREEPPDEHIPAWLPAFPDPETYLQSTTVNGRGTEPRTTTFEHERENGKGDQPLLNSQQHMVSTMFENSTMVDPAVAKAKIVAAESNPFLAAPLKIEDKEVSSVAPPAKFFNNVSSDIPVVENLVQNEPGSVLETFAPAIEAINSASCDSKEDQTKFPVKEKPTVRFKVGTKNKFLGRSIGLIPQKEEHAKTLPWFAMEDEKDDRKRRAEKILRESLENPDQLVQL*