AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580028291.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580028291.01.T01 MTR_5g066840 96.296 108 4 0 1 108 1 108 1.25e-74 222
MsG0580028291.01.T01 MTR_3g111440 70.370 108 32 0 1 108 1 108 3.17e-55 171
MsG0580028291.01.T01 MTR_3g111440 70.370 108 32 0 1 108 1 108 3.27e-55 172
MsG0580028291.01.T01 MTR_5g066840 95.833 48 2 0 61 108 6 53 3.86e-28 102
MsG0580028291.01.T01 MTR_3g099560 71.795 39 11 0 68 106 24 62 3.12e-14 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580028291.01.T01 AT1G09920 63.889 108 39 0 1 108 1 108 1.63e-51 163

Find 71 sgRNAs with CRISPR-Local

Find 356 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCCCAGTACGGTGTGGTTC+GGG 0.260736 5:-77872175 MsG0580028291.01.T01:three_prime_UTR
CTCTCATTCCGATGTGATTT+CGG 0.282153 5:+77872017 None:intergenic
TTCTACAATGGATTCTTTGT+TGG 0.351141 5:-77876057 MsG0580028291.01.T01:exon
TCTCCCAGTACGGTGTGGTT+CGG 0.364814 5:-77872176 MsG0580028291.01.T01:three_prime_UTR
ATGCAAAGTTTGTGGTGATA+TGG 0.380841 5:-77875559 MsG0580028291.01.T01:CDS
TAGTGCTTATGAAGAACTTT+GGG 0.386921 5:-77874083 MsG0580028291.01.T01:intron
GTAGTGCTTATGAAGAACTT+TGG 0.413526 5:-77874084 MsG0580028291.01.T01:CDS
CAGGTGAAAACTGCCCTAAA+AGG 0.422020 5:-77874167 MsG0580028291.01.T01:CDS
TCCCATACCTACACGGCCTC+TGG 0.426583 5:+77871990 None:intergenic
CGGATAGTGCCCGTTCCAAC+TGG 0.436083 5:+77872068 None:intergenic
TGTCTCACTGCACAATGAAC+AGG 0.436119 5:+77874218 None:intergenic
CGAAATCACATCGGAATGAG+AGG 0.451199 5:-77872016 MsG0580028291.01.T01:three_prime_UTR
TAGAAAATAAAATTGAGATT+CGG 0.456353 5:+77876082 None:intergenic
AGGTTCCCGCCAGTTGGAAC+GGG 0.457015 5:-77872077 MsG0580028291.01.T01:three_prime_UTR
ATAGCACTGTGGGCTCTTCA+AGG 0.460786 5:-77873898 MsG0580028291.01.T01:CDS
GGGACGAACCAGGCGGAAGC+TGG 0.461974 5:-77872154 MsG0580028291.01.T01:three_prime_UTR
TGCTCAGCTAGATCAATTGC+TGG 0.462856 5:+77874111 None:intergenic
GTCCCCGAACCACACCGTAC+TGG 0.471399 5:+77872172 None:intergenic
TTCGGTTCCTCTCTTAACGT+GGG 0.472814 5:+77872035 None:intergenic
CTAGATCAATTGCTGGCAAT+GGG 0.474882 5:+77874118 None:intergenic
TGCAAATCAACATTCGCAAC+GGG 0.475933 5:+77875612 None:intergenic
AATTGATCTAGCTGAGCATC+AGG 0.477671 5:-77874106 MsG0580028291.01.T01:CDS
ACGAACCAGGCGGAAGCTGG+TGG 0.486580 5:-77872151 MsG0580028291.01.T01:three_prime_UTR
GTGTGGTTCGGGGACGAACC+AGG 0.487429 5:-77872164 MsG0580028291.01.T01:three_prime_UTR
TCCCCGAACCACACCGTACT+GGG 0.495028 5:+77872173 None:intergenic
CATGCCCACCAGCTTCCGCC+TGG 0.497308 5:+77872146 None:intergenic
TTAACGTGGGGTCATCCTTA+CGG 0.498520 5:+77872048 None:intergenic
GCTAGATCAATTGCTGGCAA+TGG 0.505485 5:+77874117 None:intergenic
GAAAGATACAATCATGAAGC+CGG 0.508252 5:-77873938 MsG0580028291.01.T01:CDS
GGGAACCTTTCGTATCCAAC+TGG 0.508307 5:+77872092 None:intergenic
AAGGTTCCCGCCAGTTGGAA+CGG 0.512793 5:-77872078 MsG0580028291.01.T01:three_prime_UTR
TGCATTATGCTCATTGCTCA+AGG 0.517451 5:-77875593 MsG0580028291.01.T01:CDS
TACGAAAGGTTCCCGCCAGT+TGG 0.525546 5:-77872083 MsG0580028291.01.T01:three_prime_UTR
GATATCATAGATATCCATAC+AGG 0.527214 5:-77874186 MsG0580028291.01.T01:CDS
AATCATGAAGCCGGGTGCAA+TGG 0.534643 5:-77873929 MsG0580028291.01.T01:CDS
ACCTTTCGTATCCAACTGGC+GGG 0.537792 5:+77872096 None:intergenic
ATCTTGAATGCCATTGCACC+CGG 0.539175 5:+77873919 None:intergenic
TAGTGCCCGTTCCAACTGGC+GGG 0.539181 5:+77872072 None:intergenic
AAAGTTGACAGAGTTCTGTT+CGG 0.540254 5:+77873984 None:intergenic
GCTTTCGATATCCCGCCAGT+TGG 0.540877 5:-77872107 MsG0580028291.01.T01:three_prime_UTR
GGCATTCAAGATAGCACTGT+GGG 0.555287 5:-77873908 MsG0580028291.01.T01:CDS
GAACCACACCGTACTGGGAG+AGG 0.563212 5:+77872178 None:intergenic
TTTCGGTTCCTCTCTTAACG+TGG 0.567209 5:+77872034 None:intergenic
CGAACCAGGCGGAAGCTGGT+GGG 0.577171 5:-77872150 MsG0580028291.01.T01:three_prime_UTR
AAAGATACAATCATGAAGCC+GGG 0.583376 5:-77873937 MsG0580028291.01.T01:CDS
TCCCAGTACGGTGTGGTTCG+GGG 0.588330 5:-77872174 MsG0580028291.01.T01:three_prime_UTR
ATACCTTGTAGGAAGTATGC+GGG 0.594163 5:-77874009 MsG0580028291.01.T01:intron
CTACTAGTACATGTTCTCAC+TGG 0.595693 5:-77876028 MsG0580028291.01.T01:intron
ATGCAAATCAACATTCGCAA+CGG 0.595763 5:+77875611 None:intergenic
TCGACATACTGGCGCATGAG+TGG 0.600379 5:+77875503 None:intergenic
GGATATCGAAAGCCACGTCG+TGG 0.608094 5:+77872117 None:intergenic
ATAGTGCCCGTTCCAACTGG+CGG 0.609125 5:+77872071 None:intergenic
AGAGCAGACCTCTCCCAGTA+CGG 0.611198 5:-77872186 MsG0580028291.01.T01:exon
AACCTTTCGTATCCAACTGG+CGG 0.618482 5:+77872095 None:intergenic
TCGGTTCCTCTCTTAACGTG+GGG 0.619643 5:+77872036 None:intergenic
GAGGGATCCAGAGGCCGTGT+AGG 0.622277 5:-77871997 None:intergenic
TTCATTGTGCAGTGAGACAG+TGG 0.626137 5:-77874214 MsG0580028291.01.T01:CDS
TGGAACGGGCACTATCCGTA+AGG 0.628192 5:-77872063 MsG0580028291.01.T01:three_prime_UTR
GATATCGAAAGCCACGTCGT+GGG 0.629384 5:+77872118 None:intergenic
TCCCGCCAGTTGGATACGAA+AGG 0.632564 5:-77872097 MsG0580028291.01.T01:three_prime_UTR
CATACCTTGTAGGAAGTATG+CGG 0.643177 5:-77874010 MsG0580028291.01.T01:intron
CATGTAGTCCCATACCTACA+CGG 0.647775 5:+77871983 None:intergenic
GGATGACCCCACGTTAAGAG+AGG 0.651963 5:-77872042 MsG0580028291.01.T01:three_prime_UTR
GAAATCACATCGGAATGAGA+GGG 0.658495 5:-77872015 MsG0580028291.01.T01:three_prime_UTR
GAGAGGAACCGAAATCACAT+CGG 0.666477 5:-77872025 MsG0580028291.01.T01:three_prime_UTR
GGCATGTAACACCCACGACG+TGG 0.666877 5:-77872129 MsG0580028291.01.T01:three_prime_UTR
AGACCTCTCCCAGTACGGTG+TGG 0.674891 5:-77872181 MsG0580028291.01.T01:three_prime_UTR
TCGGAATGAGAGGGATCCAG+AGG 0.679524 5:-77872006 MsG0580028291.01.T01:three_prime_UTR
ATTGAGATTCGGATTATACG+AGG 0.682107 5:+77876093 None:intergenic
TGGTTCGGGGACGAACCAGG+CGG 0.706143 5:-77872161 MsG0580028291.01.T01:three_prime_UTR
TGGCATTCAAGATAGCACTG+TGG 0.772147 5:-77873909 MsG0580028291.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGTTTTTATTTATTTTAATC+TGG - Chr5:77872256-77872275 MsG0580028291.01.T01:intron 10.0%
!! AAACTTAACATAGATTAAAT+AGG + Chr5:77872439-77872458 None:intergenic 15.0%
!! TAGAAAATAAAATTGAGATT+CGG + Chr5:77872077-77872096 None:intergenic 15.0%
!! TATGAAATGAAGAAAAAATA+AGG - Chr5:77872758-77872777 MsG0580028291.01.T01:intron 15.0%
!!! AACTCATTGTTTTTTTTTTT+TGG - Chr5:77874316-77874335 MsG0580028291.01.T01:intron 15.0%
!!! TAATCTATGTTAAGTTTTAT+GGG - Chr5:77872442-77872461 MsG0580028291.01.T01:intron 15.0%
!!! TTAATCTATGTTAAGTTTTA+TGG - Chr5:77872441-77872460 MsG0580028291.01.T01:intron 15.0%
!! AACAAAAAAAAAAAACTTGC+AGG - Chr5:77872396-77872415 MsG0580028291.01.T01:intron 20.0%
!! CTTGATAAGAGTTTATAAAA+AGG - Chr5:77874949-77874968 MsG0580028291.01.T01:intron 20.0%
!! TAAAATTGAACTCTATTTGT+TGG - Chr5:77874801-77874820 MsG0580028291.01.T01:intron 20.0%
!! TAATTGATATTGTCGAAATT+TGG + Chr5:77875022-77875041 None:intergenic 20.0%
!!! ACATTTTTGTTATAAAAGAC+TGG + Chr5:77873902-77873921 None:intergenic 20.0%
!!! AGTCTTTTATAACAAAAATG+TGG - Chr5:77873901-77873920 MsG0580028291.01.T01:CDS 20.0%
!!! ATGATCTGTTTTTGATTTAA+TGG - Chr5:77872502-77872521 MsG0580028291.01.T01:intron 20.0%
!!! ATTTGTTTGTGTTTTGTTTA+AGG + Chr5:77872033-77872052 None:intergenic 20.0%
!!! TAATAATAGCTTCAACTTTT+AGG - Chr5:77874729-77874748 MsG0580028291.01.T01:intron 20.0%
!!! TAATGTCCTTACAATTTTTT+TGG - Chr5:77873034-77873053 MsG0580028291.01.T01:intron 20.0%
!!! TAGATTAAATAGGTGTTTTT+TGG + Chr5:77872429-77872448 None:intergenic 20.0%
!!! TTATTTTCTATCTTCTACAA+TGG - Chr5:77872087-77872106 MsG0580028291.01.T01:three_prime_UTR 20.0%
! AAACTTGAATTGTTAGAAGA+AGG + Chr5:77874599-77874618 None:intergenic 25.0%
! AATAAAAACACCTTAATTGC+AGG + Chr5:77872246-77872265 None:intergenic 25.0%
! ACATTACACATGTATATAAG+AGG + Chr5:77875522-77875541 None:intergenic 25.0%
! AGAAAATAGTAGAAGACAAT+GGG + Chr5:77874492-77874511 None:intergenic 25.0%
! AGCCTTACTATTATTTAATG+AGG + Chr5:77872818-77872837 None:intergenic 25.0%
! ATAAAAACACCTTAATTGCA+GGG + Chr5:77872245-77872264 None:intergenic 25.0%
! CACCTCATTAAATAATAGTA+AGG - Chr5:77872813-77872832 MsG0580028291.01.T01:intron 25.0%
! CTTACTATTATTTAATGAGG+TGG + Chr5:77872815-77872834 None:intergenic 25.0%
! GATAAGAGTTTATAAAAAGG+AGG - Chr5:77874952-77874971 MsG0580028291.01.T01:intron 25.0%
! GTCATGATAGTTGTAAAAAA+TGG - Chr5:77875182-77875201 MsG0580028291.01.T01:intron 25.0%
! TCAAAAAGTTGTCACAAAAA+TGG + Chr5:77875065-77875084 None:intergenic 25.0%
! TCTGAACCAAAAAAATTGTA+AGG + Chr5:77873043-77873062 None:intergenic 25.0%
! TCTGTTATTCTTCAAGAAAT+AGG + Chr5:77875321-77875340 None:intergenic 25.0%
! TGAAGCTATTATTAGTTGAT+AGG + Chr5:77874723-77874742 None:intergenic 25.0%
! TGTATGTAATGAGAAAATGT+GGG + Chr5:77875432-77875451 None:intergenic 25.0%
! TTAAACCGTAATATAATCAG+AGG + Chr5:77872209-77872228 None:intergenic 25.0%
! TTTAAGGAACAAGTTAGAAT+GGG - Chr5:77874616-77874635 MsG0580028291.01.T01:intron 25.0%
!! ATACGCAACAAATTTTATGA+TGG + Chr5:77873641-77873660 None:intergenic 25.0%
!! CTTCTAACAATTCAAGTTTA+AGG - Chr5:77874600-77874619 MsG0580028291.01.T01:intron 25.0%
!!! ATACTTTTACTTTTGAAGCA+GGG - Chr5:77873837-77873856 MsG0580028291.01.T01:intron 25.0%
!!! ATCATAAAATTTGTTGCGTA+TGG - Chr5:77873640-77873659 MsG0580028291.01.T01:intron 25.0%
!!! TATACTTTTACTTTTGAAGC+AGG - Chr5:77873836-77873855 MsG0580028291.01.T01:intron 25.0%
!!! TTCCTTTTTTATCTCGATTT+TGG - Chr5:77873077-77873096 MsG0580028291.01.T01:intron 25.0%
!!! TTGTTTTTTTTTTTTGGTCG+TGG - Chr5:77874322-77874341 MsG0580028291.01.T01:intron 25.0%
!!! TTTTGATTTAATGGTTTCAG+TGG - Chr5:77872511-77872530 MsG0580028291.01.T01:intron 25.0%
AAAACAATGGAGAGAGAAAA+AGG + Chr5:77875133-77875152 None:intergenic 30.0%
AAGATGCATCTTGTTGATAT+GGG + Chr5:77875756-77875775 None:intergenic 30.0%
AAGCAAAAGGAAAAATATGG+TGG + Chr5:77875408-77875427 None:intergenic 30.0%
ACAAAAATGTGGATTTGTGT+AGG - Chr5:77873912-77873931 MsG0580028291.01.T01:CDS 30.0%
ACATGTGTAATGTAATAGCT+AGG - Chr5:77875529-77875548 MsG0580028291.01.T01:CDS 30.0%
ACCATTCTTTAAACTCAGAA+CGG + Chr5:77874461-77874480 None:intergenic 30.0%
ACGAAAATCTCAAATAATGG+AGG - Chr5:77872782-77872801 MsG0580028291.01.T01:intron 30.0%
ATAAAAGACTGGCATAAAAG+TGG + Chr5:77873891-77873910 None:intergenic 30.0%
ATTTCTGCAAAATTGAACCT+TGG + Chr5:77872709-77872728 None:intergenic 30.0%
CGAGATAAAAAAGGAAATTC+CGG + Chr5:77873073-77873092 None:intergenic 30.0%
CTCATAGTTTACTGATAAGT+TGG - Chr5:77873663-77873682 MsG0580028291.01.T01:intron 30.0%
CTTCAAAAATGCAAAGTTTG+TGG - Chr5:77872589-77872608 MsG0580028291.01.T01:intron 30.0%
CTTCTATTGGTCAAAAACAA+TGG + Chr5:77875146-77875165 None:intergenic 30.0%
GAAAATAGTAGAAGACAATG+GGG + Chr5:77874491-77874510 None:intergenic 30.0%
GAAGGCTTATAAGAATTGTT+AGG - Chr5:77875725-77875744 MsG0580028291.01.T01:intron 30.0%
GACCAAAATCGAGATAAAAA+AGG + Chr5:77873082-77873101 None:intergenic 30.0%
GAGAAAATAGTAGAAGACAA+TGG + Chr5:77874493-77874512 None:intergenic 30.0%
GATATCATAGATATCCATAC+AGG - Chr5:77873970-77873989 MsG0580028291.01.T01:CDS 30.0%
GGAAAGCAAAAGGAAAAATA+TGG + Chr5:77875411-77875430 None:intergenic 30.0%
GGAACGAAAATCTCAAATAA+TGG - Chr5:77872779-77872798 MsG0580028291.01.T01:intron 30.0%
GTGTATGTAATGAGAAAATG+TGG + Chr5:77875433-77875452 None:intergenic 30.0%
GTTGCTACTGATAACTATTA+AGG - Chr5:77873113-77873132 MsG0580028291.01.T01:intron 30.0%
GTTTAAGGAACAAGTTAGAA+TGG - Chr5:77874615-77874634 MsG0580028291.01.T01:intron 30.0%
GTTTGTAATTCATACCTTGT+AGG - Chr5:77874136-77874155 MsG0580028291.01.T01:CDS 30.0%
TAGTGCTTATGAAGAACTTT+GGG - Chr5:77874073-77874092 MsG0580028291.01.T01:intron 30.0%
TATGATGATAGACAAATTGC+AGG + Chr5:77874378-77874397 None:intergenic 30.0%
TATGATGGTTACAGTATGAA+AGG + Chr5:77873626-77873645 None:intergenic 30.0%
TCTATCATCATAGTATGTGT+AGG - Chr5:77874386-77874405 MsG0580028291.01.T01:intron 30.0%
TGTCTCCTCTGATTATATTA+CGG - Chr5:77872201-77872220 MsG0580028291.01.T01:intron 30.0%
! AACAAGATGCATCTTCTTTT+CGG - Chr5:77875761-77875780 MsG0580028291.01.T01:intron 30.0%
! CAACTTATATGAAGTGTCAT+AGG + Chr5:77874763-77874782 None:intergenic 30.0%
! CAATCATTTGGTGAGTAATT+CGG + Chr5:77875365-77875384 None:intergenic 30.0%
! CATGCATTTTATACTCGTAA+AGG + Chr5:77874529-77874548 None:intergenic 30.0%
! GATTTTATTCCCTGCAATTA+AGG - Chr5:77872233-77872252 MsG0580028291.01.T01:intron 30.0%
! TCTTGTTTAGATTCAGTTTC+TGG - Chr5:77872286-77872305 MsG0580028291.01.T01:intron 30.0%
! TTCTACAATGGATTCTTTGT+TGG - Chr5:77872099-77872118 MsG0580028291.01.T01:three_prime_UTR 30.0%
! TTCTAGTCGTAGTGATTTTA+CGG - Chr5:77873433-77873452 MsG0580028291.01.T01:intron 30.0%
! TTGTCTTCTACTATTTTCTC+TGG - Chr5:77874493-77874512 MsG0580028291.01.T01:intron 30.0%
! TTTTTGACCAATAGAAGAGA+GGG - Chr5:77875149-77875168 MsG0580028291.01.T01:intron 30.0%
!! AGCTATTATTAGTTGATAGG+AGG + Chr5:77874720-77874739 None:intergenic 30.0%
!! TCAATGAGTTTGTTAGGAAA+GGG - Chr5:77873464-77873483 MsG0580028291.01.T01:intron 30.0%
!!! TTATCTTTTTTCAGCTTCCA+AGG - Chr5:77872689-77872708 MsG0580028291.01.T01:intron 30.0%
!!! TTGTGTTTTGTTTAAGGATG+AGG + Chr5:77872027-77872046 None:intergenic 30.0%
!!! TTTTTTTCCCTCTCTTCTAT+TGG + Chr5:77875159-77875178 None:intergenic 30.0%
AAAACAAAGGAGATGGTAGA+GGG - Chr5:77873245-77873264 MsG0580028291.01.T01:intron 35.0%
AAAGATACAATCATGAAGCC+GGG - Chr5:77874219-77874238 MsG0580028291.01.T01:CDS 35.0%
AAAGTTGACAGAGTTCTGTT+CGG + Chr5:77874175-77874194 None:intergenic 35.0%
AACAAAATGCAAGAGTCCTT+TGG + Chr5:77874667-77874686 None:intergenic 35.0%
AACATTAGAATCATGTCACG+TGG - Chr5:77872346-77872365 MsG0580028291.01.T01:intron 35.0%
ACAAAATGCAAGAGTCCTTT+GGG + Chr5:77874666-77874685 None:intergenic 35.0%
ACAACACAAATTCGACATAC+TGG + Chr5:77872667-77872686 None:intergenic 35.0%
ACACATGTATATAAGAGGAG+AGG + Chr5:77875517-77875536 None:intergenic 35.0%
ACCTGCGTTTGAAAATAGAA+AGG - Chr5:77873727-77873746 MsG0580028291.01.T01:intron 35.0%
AGAAAATGTGGGAAAGCAAA+AGG + Chr5:77875421-77875440 None:intergenic 35.0%
AGGAAGGAACAGAAAAACAA+AGG + Chr5:77872007-77872026 None:intergenic 35.0%
ATGCAAAGTTTGTGGTGATA+TGG - Chr5:77872597-77872616 MsG0580028291.01.T01:intron 35.0%
ATGCAAATCAACATTCGCAA+CGG + Chr5:77872548-77872567 None:intergenic 35.0%
ATTGAGATTCGGATTATACG+AGG + Chr5:77872066-77872085 None:intergenic 35.0%
ATTTCATTTCCATCGTTGCA+AGG + Chr5:77875292-77875311 None:intergenic 35.0%
ATTTGATCCCTGCAACTTAT+TGG + Chr5:77872373-77872392 None:intergenic 35.0%
CAAAAGGAAAAATATGGTGG+AGG + Chr5:77875405-77875424 None:intergenic 35.0%
CACATGTATATAAGAGGAGA+GGG + Chr5:77875516-77875535 None:intergenic 35.0%
CTAACTCATCCTTACAAAAC+CGG + Chr5:77874996-77875015 None:intergenic 35.0%
GAAAGATACAATCATGAAGC+CGG - Chr5:77874218-77874237 MsG0580028291.01.T01:CDS 35.0%
GAAGATGCATCTTGTTGATA+TGG + Chr5:77875757-77875776 None:intergenic 35.0%
GATAGACAAATTGCAGGATT+CGG + Chr5:77874372-77874391 None:intergenic 35.0%
GCATATAAGTGACAAGAAAC+TGG - Chr5:77873149-77873168 MsG0580028291.01.T01:intron 35.0%
GGAACAGAAAAACAAAGGTT+CGG + Chr5:77872002-77872021 None:intergenic 35.0%
GTAGTGCTTATGAAGAACTT+TGG - Chr5:77874072-77874091 MsG0580028291.01.T01:intron 35.0%
GTTAGAAGAAGGCTTAAGAT+TGG + Chr5:77874588-77874607 None:intergenic 35.0%
TATCAGTATTAGTGTCGTGT+CGG + Chr5:77872882-77872901 None:intergenic 35.0%
TTCTTTAAACTCAGAACGGT+TGG + Chr5:77874457-77874476 None:intergenic 35.0%
TTGAAAACTGCACACAACAA+TGG - Chr5:77873348-77873367 MsG0580028291.01.T01:intron 35.0%
! ACAAGATGCATCTTCTTTTC+GGG - Chr5:77875762-77875781 MsG0580028291.01.T01:intron 35.0%
! ACCGTTCTGAGTTTAAAGAA+TGG - Chr5:77874457-77874476 MsG0580028291.01.T01:intron 35.0%
! ACCTTTCTATTTTCAAACGC+AGG + Chr5:77873731-77873750 None:intergenic 35.0%
! CACAAGTGACAATCCTTTTA+GGG + Chr5:77874005-77874024 None:intergenic 35.0%
! GTTGATAGGAGGTTCAATAA+TGG + Chr5:77874709-77874728 None:intergenic 35.0%
! GTTTTTGACCAATAGAAGAG+AGG - Chr5:77875148-77875167 MsG0580028291.01.T01:intron 35.0%
! TCACAAGTGACAATCCTTTT+AGG + Chr5:77874006-77874025 None:intergenic 35.0%
! TTCTTGTCACTTATATGCTG+AGG + Chr5:77873147-77873166 None:intergenic 35.0%
!! ACACTTTGCTTTTACTATGG+TGG - Chr5:77875260-77875279 MsG0580028291.01.T01:intron 35.0%
!! AGGACACTTTGCTTTTACTA+TGG - Chr5:77875257-77875276 MsG0580028291.01.T01:intron 35.0%
!! CGGTTGGTAACAATCATAAT+AGG + Chr5:77874441-77874460 None:intergenic 35.0%
!! GTCAATGAGTTTGTTAGGAA+AGG - Chr5:77873463-77873482 MsG0580028291.01.T01:intron 35.0%
!! TAACGAACATCTCTGAGATT+AGG + Chr5:77872996-77873015 None:intergenic 35.0%
!!! GTTTTGTTTAAGGATGAGGA+AGG + Chr5:77872023-77872042 None:intergenic 35.0%
!!! TGATCCTCAGCATTTTTTCT+AGG + Chr5:77872625-77872644 None:intergenic 35.0%
!!! TTTTTTTGGTCGTGGACTTA+AGG - Chr5:77874330-77874349 MsG0580028291.01.T01:intron 35.0%
AACTGCACACAACAATGGTA+AGG - Chr5:77873353-77873372 MsG0580028291.01.T01:intron 40.0%
AATGTCGCCATTAGTCAACT+AGG + Chr5:77874853-77874872 None:intergenic 40.0%
AATTGATCTAGCTGAGCATC+AGG - Chr5:77874050-77874069 MsG0580028291.01.T01:intron 40.0%
ACAAGAAACTGGAGTTTGTG+TGG - Chr5:77873160-77873179 MsG0580028291.01.T01:intron 40.0%
AGAACAGGATATTGTGAAGG+AGG - Chr5:77873217-77873236 MsG0580028291.01.T01:intron 40.0%
ATACGTGACAGGCAATCATT+TGG + Chr5:77875377-77875396 None:intergenic 40.0%
ATATAAGAGGAGAGGGACAA+AGG + Chr5:77875509-77875528 None:intergenic 40.0%
ATGTCGCCATTAGTCAACTA+GGG + Chr5:77874852-77874871 None:intergenic 40.0%
CAAAATGCAAGAGTCCTTTG+GGG + Chr5:77874665-77874684 None:intergenic 40.0%
CAAGAAACTGGAGTTTGTGT+GGG - Chr5:77873161-77873180 MsG0580028291.01.T01:intron 40.0%
CATACACCAGATTACACTTC+TGG - Chr5:77873378-77873397 MsG0580028291.01.T01:intron 40.0%
CCTAACAAACTCATTGACCT+CGG + Chr5:77873461-77873480 None:intergenic 40.0%
CCTTCACAATATCCTGTTCT+CGG + Chr5:77873217-77873236 None:intergenic 40.0%
CTAATACTGATACGTCGACA+CGG - Chr5:77872890-77872909 MsG0580028291.01.T01:intron 40.0%
CTACATCTCTAACTGTGATG+CGG + Chr5:77873761-77873780 None:intergenic 40.0%
CTACTAGTACATGTTCTCAC+TGG - Chr5:77872128-77872147 MsG0580028291.01.T01:three_prime_UTR 40.0%
CTAGATCAATTGCTGGCAAT+GGG + Chr5:77874041-77874060 None:intergenic 40.0%
CTCTCATTCCGATGTGATTT+CGG + Chr5:77875664-77875683 None:intergenic 40.0%
GAAAACAAAGGAGATGGTAG+AGG - Chr5:77873244-77873263 MsG0580028291.01.T01:intron 40.0%
GAAATCACATCGGAATGAGA+GGG - Chr5:77875663-77875682 MsG0580028291.01.T01:intron 40.0%
GAAGTGGCATATGGTAGTAA+TGG - Chr5:77873410-77873429 MsG0580028291.01.T01:intron 40.0%
GAGTAAGAGATGATGTTCGT+GGG + Chr5:77875477-77875496 None:intergenic 40.0%
GCTGTTCTGACAATCAGATT+TGG - Chr5:77873862-77873881 MsG0580028291.01.T01:intron 40.0%
GGTTCCTAGAAAAAATGCTG+AGG - Chr5:77872618-77872637 MsG0580028291.01.T01:intron 40.0%
TAATACTGATACGTCGACAC+GGG - Chr5:77872891-77872910 MsG0580028291.01.T01:intron 40.0%
TACAGTATGAAAGGAGCCTA+GGG + Chr5:77873617-77873636 None:intergenic 40.0%
TAGTCACTTGAAGTGGCATA+TGG - Chr5:77873401-77873420 MsG0580028291.01.T01:intron 40.0%
TGCAAATCAACATTCGCAAC+GGG + Chr5:77872547-77872566 None:intergenic 40.0%
TGCATTATGCTCATTGCTCA+AGG - Chr5:77872563-77872582 MsG0580028291.01.T01:intron 40.0%
TGGTAAATTCCTTGCAACGA+TGG - Chr5:77875280-77875299 MsG0580028291.01.T01:intron 40.0%
TTACAGTATGAAAGGAGCCT+AGG + Chr5:77873618-77873637 None:intergenic 40.0%
TTCTCATTACATACACCAGC+TGG - Chr5:77875437-77875456 MsG0580028291.01.T01:intron 40.0%
! AGAGTCTTATCTAACCGATG+TGG + Chr5:77874931-77874950 None:intergenic 40.0%
! ATACCTTGTAGGAAGTATGC+GGG - Chr5:77874147-77874166 MsG0580028291.01.T01:CDS 40.0%
! CAGAAGTGTAATCTGGTGTA+TGG + Chr5:77873380-77873399 None:intergenic 40.0%
! CAGTCTGGGATGTTACAATT+TGG - Chr5:77875943-77875962 MsG0580028291.01.T01:intron 40.0%
! CATACCTTGTAGGAAGTATG+CGG - Chr5:77874146-77874165 MsG0580028291.01.T01:CDS 40.0%
! CATTTGGTGAGTAATTCGGT+TGG + Chr5:77875361-77875380 None:intergenic 40.0%
! TGACTACCAGAAGTGTAATC+TGG + Chr5:77873387-77873406 None:intergenic 40.0%
! TTGTCACTTATATGCTGAGG+TGG + Chr5:77873144-77873163 None:intergenic 40.0%
!! CGGTTTTGTAAGGATGAGTT+AGG - Chr5:77874994-77875013 MsG0580028291.01.T01:intron 40.0%
!!! TTTTGGTTCAGAATGATCGC+CGG - Chr5:77873051-77873070 MsG0580028291.01.T01:intron 40.0%
AACCTTTCGTATCCAACTGG+CGG + Chr5:77876064-77876083 None:intergenic 45.0%
AACCTTTCGTATCGAACTGG+CGG + Chr5:77875585-77875604 None:intergenic 45.0%
AAGTCAAGCACGCTTAACTG+TGG + Chr5:77875807-77875826 None:intergenic 45.0%
ACAGTTAAGCGTGCTTGACT+TGG - Chr5:77875806-77875825 MsG0580028291.01.T01:intron 45.0%
ACGTGGTCCAATAAGTTGCA+GGG - Chr5:77872363-77872382 MsG0580028291.01.T01:intron 45.0%
ACTAACCCCACAAACCAACA+CGG + Chr5:77875908-77875927 None:intergenic 45.0%
ACTGGAGTTTGTGTGGGAAA+TGG - Chr5:77873167-77873186 MsG0580028291.01.T01:intron 45.0%
AGGATATTGTGAAGGAGGCA+TGG - Chr5:77873222-77873241 MsG0580028291.01.T01:intron 45.0%
ATCTTGAATGCCATTGCACC+CGG + Chr5:77874240-77874259 None:intergenic 45.0%
ATGAGAGAGAGTGATGTTGC+CGG - Chr5:77873487-77873506 MsG0580028291.01.T01:intron 45.0%
CAGGTGAAAACTGCCCTAAA+AGG - Chr5:77873989-77874008 MsG0580028291.01.T01:CDS 45.0%
CAGTTGGAGAATAGAGGAAG+TGG - Chr5:77873283-77873302 MsG0580028291.01.T01:intron 45.0%
CATGTAGTCCCATACCTACA+CGG + Chr5:77875698-77875717 None:intergenic 45.0%
CCGAGAACAGGATATTGTGA+AGG - Chr5:77873214-77873233 MsG0580028291.01.T01:intron 45.0%
CGAAATCACATCGGAATGAG+AGG - Chr5:77875662-77875681 MsG0580028291.01.T01:intron 45.0%
CGCATCACAGTTAGAGATGT+AGG - Chr5:77873759-77873778 MsG0580028291.01.T01:intron 45.0%
CTGATGAAGCCTCAAAACAG+AGG - Chr5:77875237-77875256 MsG0580028291.01.T01:intron 45.0%
CTTCTGGTAGTCACTTGAAG+TGG - Chr5:77873394-77873413 MsG0580028291.01.T01:intron 45.0%
GACTTGGAGTAGTACTAGGA+TGG - Chr5:77875822-77875841 MsG0580028291.01.T01:intron 45.0%
GAGAATGCGATAGTTGACAG+CGG + Chr5:77873801-77873820 None:intergenic 45.0%
GAGACATTCATTCTGGCAGT+TGG - Chr5:77873267-77873286 MsG0580028291.01.T01:intron 45.0%
GAGAGGAACCGAAATCACAT+CGG - Chr5:77875653-77875672 MsG0580028291.01.T01:intron 45.0%
GATATCGAAAGCCACATCGT+GGG + Chr5:77875562-77875581 None:intergenic 45.0%
GCTAGATCAATTGCTGGCAA+TGG + Chr5:77874042-77874061 None:intergenic 45.0%
GCTTAACTGTGGAGTTCCTA+TGG + Chr5:77875796-77875815 None:intergenic 45.0%
GGAGTAAGAGATGATGTTCG+TGG + Chr5:77875478-77875497 None:intergenic 45.0%
GGCATGGAAAACAAAGGAGA+TGG - Chr5:77873238-77873257 MsG0580028291.01.T01:intron 45.0%
GGCATTCAAGATAGCACTGT+GGG - Chr5:77874248-77874267 MsG0580028291.01.T01:intron 45.0%
GTAGAGGGAGACATTCATTC+TGG - Chr5:77873260-77873279 MsG0580028291.01.T01:intron 45.0%
GTATGGGACTACATGGTTGA+AGG - Chr5:77875703-77875722 MsG0580028291.01.T01:intron 45.0%
GTTCGTGGGTCTAAGAAACA+AGG + Chr5:77875463-77875482 None:intergenic 45.0%
TAACATCCCAGACTGCTTAC+AGG + Chr5:77875938-77875957 None:intergenic 45.0%
TCAGTAGCAACCTAACAGCA+TGG + Chr5:77873104-77873123 None:intergenic 45.0%
TCGGTTCCTCTCTTTAACGT+GGG + Chr5:77875645-77875664 None:intergenic 45.0%
TGCTCAGCTAGATCAATTGC+TGG + Chr5:77874048-77874067 None:intergenic 45.0%
TGGAGGAAAAGATACGTGAC+AGG + Chr5:77875388-77875407 None:intergenic 45.0%
TGGCATTCAAGATAGCACTG+TGG - Chr5:77874247-77874266 MsG0580028291.01.T01:intron 45.0%
TGTCGCCATTAGTCAACTAG+GGG + Chr5:77874851-77874870 None:intergenic 45.0%
TGTCTCACTGCACAATGAAC+AGG + Chr5:77873941-77873960 None:intergenic 45.0%
TTAACGTGGGGTCATCCTTA+CGG + Chr5:77875632-77875651 None:intergenic 45.0%
TTCATTGTGCAGTGAGACAG+TGG - Chr5:77873942-77873961 MsG0580028291.01.T01:CDS 45.0%
TTCGGTTCCTCTCTTAACGT+GGG + Chr5:77876124-77876143 None:intergenic 45.0%
TTCGGTTCCTCTCTTTAACG+TGG + Chr5:77875646-77875665 None:intergenic 45.0%
TTCTGGCAGTTGGAGAATAG+AGG - Chr5:77873277-77873296 MsG0580028291.01.T01:intron 45.0%
TTTCGGTTCCTCTCTTAACG+TGG + Chr5:77876125-77876144 None:intergenic 45.0%
! CCGAGGTCAATGAGTTTGTT+AGG - Chr5:77873458-77873477 MsG0580028291.01.T01:intron 45.0%
! GAAGGAGGCATGGAAAACAA+AGG - Chr5:77873232-77873251 MsG0580028291.01.T01:intron 45.0%
! TAGGGCAGTTTTCACCTGTA+TGG + Chr5:77873987-77874006 None:intergenic 45.0%
!! AAAAGACCCGTGTTGGTTTG+TGG - Chr5:77875898-77875917 MsG0580028291.01.T01:intron 45.0%
!! AAAGACCCGTGTTGGTTTGT+GGG - Chr5:77875899-77875918 MsG0580028291.01.T01:intron 45.0%
!! AAGAGTCCTTTGGGGTTCAA+GGG + Chr5:77874657-77874676 None:intergenic 45.0%
!! ACATTTGAGTTGCCTCGTGT+TGG - Chr5:77874868-77874887 MsG0580028291.01.T01:intron 45.0%
!! CCTTACAAAACCGGCTTGTA+AGG + Chr5:77874987-77875006 None:intergenic 45.0%
!! CCTTACAAGCCGGTTTTGTA+AGG - Chr5:77874984-77875003 MsG0580028291.01.T01:intron 45.0%
!! CGATTTTGGTCCATGCTGTT+AGG - Chr5:77873091-77873110 MsG0580028291.01.T01:intron 45.0%
!! GCAAAGTGTCCTCTGTTTTG+AGG + Chr5:77875249-77875268 None:intergenic 45.0%
!! GCTTGACTTGGAGTAGTACT+AGG - Chr5:77875818-77875837 MsG0580028291.01.T01:intron 45.0%
!! TGTTGGTTTGTGGGGTTAGT+CGG - Chr5:77875908-77875927 MsG0580028291.01.T01:intron 45.0%
!! TTGCCTTGTGTTGGCTTTGA+GGG - Chr5:77874892-77874911 MsG0580028291.01.T01:intron 45.0%
!! TTTTCGGGAGCTCAATCCAT+AGG - Chr5:77875777-77875796 MsG0580028291.01.T01:intron 45.0%
AATCATGAAGCCGGGTGCAA+TGG - Chr5:77874227-77874246 MsG0580028291.01.T01:intron 50.0%
ACCTTTCGTATCCAACTGGC+GGG + Chr5:77876063-77876082 None:intergenic 50.0%
ACCTTTCGTATCGAACTGGC+GGG + Chr5:77875584-77875603 None:intergenic 50.0%
ACTCCCTCAAAGCCAACACA+AGG + Chr5:77874898-77874917 None:intergenic 50.0%
AGAGAGTGATGTTGCCGGAA+GGG - Chr5:77873492-77873511 MsG0580028291.01.T01:intron 50.0%
AGAGGGACAAAGGAGACTGA+AGG + Chr5:77875499-77875518 None:intergenic 50.0%
ATAGCACTGTGGGCTCTTCA+AGG - Chr5:77874258-77874277 MsG0580028291.01.T01:intron 50.0%
ATAGTGCCCATTCCAACTGG+CGG + Chr5:77875609-77875628 None:intergenic 50.0%
ATCCGCCCCTAGTTGACTAA+TGG - Chr5:77874843-77874862 MsG0580028291.01.T01:intron 50.0%
ATGCTTACCGGGAAACTTCC+CGG + Chr5:77875855-77875874 None:intergenic 50.0%
CACGTGGTCCAATAAGTTGC+AGG - Chr5:77872362-77872381 MsG0580028291.01.T01:intron 50.0%
CATGCTGAAAAGACCCGTGT+TGG - Chr5:77875891-77875910 MsG0580028291.01.T01:intron 50.0%
CGAAACACTGACACAGACAC+CGG - Chr5:77872853-77872872 MsG0580028291.01.T01:intron 50.0%
CGGTGGGCATATAAACTGAC+GGG + Chr5:77873559-77873578 None:intergenic 50.0%
CGGTTCCTCTCTTTAACGTG+GGG + Chr5:77875644-77875663 None:intergenic 50.0%
CGTGTAGGTATGGGACTACA+TGG - Chr5:77875696-77875715 MsG0580028291.01.T01:intron 50.0%
CTAACCCCACAAACCAACAC+GGG + Chr5:77875907-77875926 None:intergenic 50.0%
GATATCGAAAGCCACGTCGT+GGG + Chr5:77876041-77876060 None:intergenic 50.0%
GATGACCCCACGTTAAAGAG+AGG - Chr5:77875636-77875655 MsG0580028291.01.T01:intron 50.0%
GCGGTGGGCATATAAACTGA+CGG + Chr5:77873560-77873579 None:intergenic 50.0%
GGAGTTTGTGTGGGAAATGG+TGG - Chr5:77873170-77873189 MsG0580028291.01.T01:intron 50.0%
GGATATCGAAAGCCACATCG+TGG + Chr5:77875563-77875582 None:intergenic 50.0%
GGCAATCCTGTAAGCAGTCT+GGG - Chr5:77875929-77875948 MsG0580028291.01.T01:intron 50.0%
GGGAACCTTTCGTATCCAAC+TGG + Chr5:77876067-77876086 None:intergenic 50.0%
GGGAACCTTTCGTATCGAAC+TGG + Chr5:77875588-77875607 None:intergenic 50.0%
GGGACTACATGGTTGAAGGA+AGG - Chr5:77875707-77875726 MsG0580028291.01.T01:intron 50.0%
GTACTAGGATGGTGACCTAC+CGG - Chr5:77875833-77875852 MsG0580028291.01.T01:intron 50.0%
GTCCTCACTCACATGCTTAC+CGG + Chr5:77875867-77875886 None:intergenic 50.0%
GTCTAAGAAACAAGGCCAGC+TGG + Chr5:77875455-77875474 None:intergenic 50.0%
GTTCCCGCATACTTCCTACA+AGG + Chr5:77874153-77874172 None:intergenic 50.0%
TACTAGGATGGTGACCTACC+GGG - Chr5:77875834-77875853 MsG0580028291.01.T01:intron 50.0%
TAGGTGTAACACCCACGATG+TGG - Chr5:77875548-77875567 MsG0580028291.01.T01:CDS 50.0%
TATCTCCCTTCCTTCCCTTC+CGG + Chr5:77873509-77873528 None:intergenic 50.0%
TCCTCACTCACATGCTTACC+GGG + Chr5:77875866-77875885 None:intergenic 50.0%
TCGGTTCCTCTCTTAACGTG+GGG + Chr5:77876123-77876142 None:intergenic 50.0%
TGGAATGGGCACTATCCGTA+AGG - Chr5:77875614-77875633 MsG0580028291.01.T01:CDS 50.0%
! ATTAGTGTCGTGTCGGTGTC+CGG + Chr5:77872875-77872894 None:intergenic 50.0%
! GGTGAGTAATTCGGTTGGTC+AGG + Chr5:77875356-77875375 None:intergenic 50.0%
!! AAGACCCGTGTTGGTTTGTG+GGG - Chr5:77875900-77875919 MsG0580028291.01.T01:intron 50.0%
!! CAAAACCGGCTTGTAAGGTG+AGG + Chr5:77874982-77875001 None:intergenic 50.0%
!! CAAGAGTCCTTTGGGGTTCA+AGG + Chr5:77874658-77874677 None:intergenic 50.0%
!! CTTGCCTTGTGTTGGCTTTG+AGG - Chr5:77874891-77874910 MsG0580028291.01.T01:intron 50.0%
!! GAGTGGCTTTAGTGCCACAT+CGG - Chr5:77874914-77874933 MsG0580028291.01.T01:intron 50.0%
!! GTAGTGATTTTACGGTGCCG+AGG - Chr5:77873441-77873460 MsG0580028291.01.T01:intron 50.0%
!! TTGTGTTGGCTTTGAGGGAG+TGG - Chr5:77874897-77874916 MsG0580028291.01.T01:intron 50.0%
AAGGTTCCCGCCAGTTGGAA+CGG - Chr5:77875599-77875618 MsG0580028291.01.T01:CDS 55.0%
AAGGTTCCCGCCAGTTGGAA+TGG - Chr5:77875599-77875618 MsG0580028291.01.T01:CDS 55.0%
ACACAAGGCAAGCCAACACG+AGG + Chr5:77874883-77874902 None:intergenic 55.0%
ACACCAACGCGTGTTGGACA+GGG - Chr5:77872965-77872984 MsG0580028291.01.T01:intron 55.0%
AGAGCAGACCTCTCCCAGTA+CGG - Chr5:77875970-77875989 MsG0580028291.01.T01:intron 55.0%
AGGTTCCCGCCAGTTGGAAT+GGG - Chr5:77875600-77875619 MsG0580028291.01.T01:CDS 55.0%
AGTGATGTTGCCGGAAGGGA+AGG - Chr5:77873496-77873515 MsG0580028291.01.T01:intron 55.0%
AGTGTCACACCAACGCGTGT+TGG - Chr5:77872959-77872978 MsG0580028291.01.T01:intron 55.0%
ATAGTGCCCGTTCCAACTGG+CGG + Chr5:77876088-77876107 None:intergenic 55.0%
ATCCAGAGGCCGTGTAGGTA+TGG - Chr5:77875686-77875705 MsG0580028291.01.T01:intron 55.0%
ATGTTGCCGGAAGGGAAGGA+AGG - Chr5:77873500-77873519 MsG0580028291.01.T01:intron 55.0%
CGCCATTAGTCAACTAGGGG+CGG + Chr5:77874848-77874867 None:intergenic 55.0%
CGGATAGTGCCCATTCCAAC+TGG + Chr5:77875612-77875631 None:intergenic 55.0%
CGGCAATCCTGTAAGCAGTC+TGG - Chr5:77875928-77875947 MsG0580028291.01.T01:intron 55.0%
CTAGGGGCGGATCGCAATAA+AGG + Chr5:77874835-77874854 None:intergenic 55.0%
GAGAGAGTGATGTTGCCGGA+AGG - Chr5:77873491-77873510 MsG0580028291.01.T01:intron 55.0%
GCACACCTCACCTTACAAGC+CGG - Chr5:77874974-77874993 MsG0580028291.01.T01:intron 55.0%
GCTTTCGATATCCCGCCAGT+TGG - Chr5:77875570-77875589 MsG0580028291.01.T01:CDS 55.0%
GGATATCGAAAGCCACGTCG+TGG + Chr5:77876042-77876061 None:intergenic 55.0%
GGATGACCCCACGTTAAGAG+AGG - Chr5:77876114-77876133 MsG0580028291.01.T01:five_prime_UTR 55.0%
GGTGTAGCTGAGGAGAAGTG+AGG - Chr5:77873191-77873210 MsG0580028291.01.T01:intron 55.0%
TACGAAAGGTTCCCGCCAGT+TGG - Chr5:77875594-77875613 MsG0580028291.01.T01:CDS 55.0%
TAGTGCCCATTCCAACTGGC+GGG + Chr5:77875608-77875627 None:intergenic 55.0%
TCCAGAGGCCGTGTAGGTAT+GGG - Chr5:77875687-77875706 MsG0580028291.01.T01:intron 55.0%
TCCCGCCAGTTCGATACGAA+AGG - Chr5:77875580-77875599 MsG0580028291.01.T01:CDS 55.0%
TCCCGCCAGTTGGATACGAA+AGG - Chr5:77876059-77876078 MsG0580028291.01.T01:exon 55.0%
TCCCGGTAAGCATGTGAGTG+AGG - Chr5:77875862-77875881 MsG0580028291.01.T01:intron 55.0%
TCGACATACTGGCGCATGAG+TGG + Chr5:77872656-77872675 None:intergenic 55.0%
TCGGAATGAGAGGGATCCAG+AGG - Chr5:77875672-77875691 MsG0580028291.01.T01:intron 55.0%
TCTCCCAGTACGGTGTGGTT+CGG - Chr5:77875980-77875999 MsG0580028291.01.T01:intron 55.0%
TGACCTACCGGGAAGTTTCC+CGG - Chr5:77875845-77875864 MsG0580028291.01.T01:intron 55.0%
TGGAACGGGCACTATCCGTA+AGG - Chr5:77876093-77876112 MsG0580028291.01.T01:five_prime_UTR 55.0%
TGTCCACCCTTGAACCCCAA+AGG - Chr5:77874648-77874667 MsG0580028291.01.T01:intron 55.0%
TGTTGCCGGAAGGGAAGGAA+GGG - Chr5:77873501-77873520 MsG0580028291.01.T01:intron 55.0%
TTACCGGGAAACTTCCCGGT+AGG + Chr5:77875851-77875870 None:intergenic 55.0%
TTCTATCCCGTGGAGGGATG+TGG + Chr5:77873582-77873601 None:intergenic 55.0%
! ATTCGGTTGGTCAGGCTGAG+TGG + Chr5:77875348-77875367 None:intergenic 55.0%
! GGGAAATGGTGGTGTAGCTG+AGG - Chr5:77873181-77873200 MsG0580028291.01.T01:intron 55.0%
!! AGTCCTTTGGGGTTCAAGGG+TGG + Chr5:77874654-77874673 None:intergenic 55.0%
!! CGTGTTGGCTTGCCTTGTGT+TGG - Chr5:77874883-77874902 MsG0580028291.01.T01:intron 55.0%
AAAGGAGCCTAGGGCTCCGT+GGG + Chr5:77873608-77873627 None:intergenic 60.0%
AGACCTCTCCCAGTACGGTG+TGG - Chr5:77875975-77875994 MsG0580028291.01.T01:intron 60.0%
AGGTTCCCGCCAGTTGGAAC+GGG - Chr5:77876079-77876098 MsG0580028291.01.T01:five_prime_UTR 60.0%
CACACCAACGCGTGTTGGAC+AGG - Chr5:77872964-77872983 MsG0580028291.01.T01:intron 60.0%
CCACGGGATAGAAACCCCCA+CGG - Chr5:77873589-77873608 MsG0580028291.01.T01:intron 60.0%
CGGATAGTGCCCGTTCCAAC+TGG + Chr5:77876091-77876110 None:intergenic 60.0%
CTCCCAGTACGGTGTGGTTC+GGG - Chr5:77875981-77876000 MsG0580028291.01.T01:intron 60.0%
GAACCACACCGTACTGGGAG+AGG + Chr5:77875981-77876000 None:intergenic 60.0%
GGAGAAGTGAGGCCGAGAAC+AGG - Chr5:77873202-77873221 MsG0580028291.01.T01:intron 60.0%
GGCATGTAACACCCACGACG+TGG - Chr5:77876027-77876046 MsG0580028291.01.T01:intron 60.0%
GGGGCGGATCGCAATAAAGG+CGG + Chr5:77874832-77874851 None:intergenic 60.0%
GGGGGTTTCTATCCCGTGGA+GGG + Chr5:77873588-77873607 None:intergenic 60.0%
TAGTGCCCGTTCCAACTGGC+GGG + Chr5:77876087-77876106 None:intergenic 60.0%
TATCCCGTGGAGGGATGTGG+CGG + Chr5:77873579-77873598 None:intergenic 60.0%
TCCCAGTACGGTGTGGTTCG+GGG - Chr5:77875982-77876001 MsG0580028291.01.T01:intron 60.0%
TCCCATACCTACACGGCCTC+TGG + Chr5:77875691-77875710 None:intergenic 60.0%
TCCCCGAACCACACCGTACT+GGG + Chr5:77875986-77876005 None:intergenic 60.0%
TGGGGGTTTCTATCCCGTGG+AGG + Chr5:77873589-77873608 None:intergenic 60.0%
TGTCCCTGTCCAACACGCGT+TGG + Chr5:77872971-77872990 None:intergenic 60.0%
AAGGAGCCTAGGGCTCCGTG+GGG + Chr5:77873607-77873626 None:intergenic 65.0%
ACGAACCAGGCGGAAGCTGG+TGG - Chr5:77876005-77876024 MsG0580028291.01.T01:intron 65.0%
AGAAACCCCCACGGAGCCCT+AGG - Chr5:77873598-77873617 MsG0580028291.01.T01:intron 65.0%
CCGTGGGGGTTTCTATCCCG+TGG + Chr5:77873592-77873611 None:intergenic 65.0%
CGAACCAGGCGGAAGCTGGT+GGG - Chr5:77876006-77876025 MsG0580028291.01.T01:intron 65.0%
GAAAGGAGCCTAGGGCTCCG+TGG + Chr5:77873609-77873628 None:intergenic 65.0%
GAGGGATCCAGAGGCCGTGT+AGG - Chr5:77875681-77875700 MsG0580028291.01.T01:intron 65.0%
GTCCCCGAACCACACCGTAC+TGG + Chr5:77875987-77876006 None:intergenic 65.0%
! GTGTGGTTCGGGGACGAACC+AGG - Chr5:77875992-77876011 MsG0580028291.01.T01:intron 65.0%
! TGGTTCGGGGACGAACCAGG+CGG - Chr5:77875995-77876014 MsG0580028291.01.T01:intron 65.0%
AGGAGCCTAGGGCTCCGTGG+GGG + Chr5:77873606-77873625 None:intergenic 70.0%
CATGCCCACCAGCTTCCGCC+TGG + Chr5:77876013-77876032 None:intergenic 70.0%
CCACCGCCACATCCCTCCAC+GGG - Chr5:77873573-77873592 MsG0580028291.01.T01:intron 70.0%
CCCACCGCCACATCCCTCCA+CGG - Chr5:77873572-77873591 MsG0580028291.01.T01:intron 70.0%
CCGTGGAGGGATGTGGCGGT+GGG + Chr5:77873575-77873594 None:intergenic 70.0%
GGGACGAACCAGGCGGAAGC+TGG - Chr5:77876002-77876021 MsG0580028291.01.T01:intron 70.0%
CCCGTGGAGGGATGTGGCGG+TGG + Chr5:77873576-77873595 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
Chr5 gene 77871998 77876180 77871998 ID=MsG0580028291.01;Name=MsG0580028291.01
Chr5 mRNA 77871998 77876180 77871998 ID=MsG0580028291.01.T01;Parent=MsG0580028291.01;Name=MsG0580028291.01.T01;_AED=0.49;_eAED=0.65;_QI=108|0.5|0.4|1|0.25|0.4|5|207|161
Chr5 exon 77871998 77872206 77871998 ID=MsG0580028291.01.T01:exon:31848;Parent=MsG0580028291.01.T01
Chr5 exon 77873878 77874020 77873878 ID=MsG0580028291.01.T01:exon:31847;Parent=MsG0580028291.01.T01
Chr5 exon 77874084 77874244 77874084 ID=MsG0580028291.01.T01:exon:31846;Parent=MsG0580028291.01.T01
Chr5 exon 77875512 77875647 77875512 ID=MsG0580028291.01.T01:exon:31845;Parent=MsG0580028291.01.T01
Chr5 exon 77876029 77876180 77876029 ID=MsG0580028291.01.T01:exon:31844;Parent=MsG0580028291.01.T01
Chr5 five_prime_UTR 77876073 77876180 77876073 ID=MsG0580028291.01.T01:five_prime_utr;Parent=MsG0580028291.01.T01
Chr5 CDS 77876029 77876072 77876029 ID=MsG0580028291.01.T01:cds;Parent=MsG0580028291.01.T01
Chr5 CDS 77875512 77875647 77875512 ID=MsG0580028291.01.T01:cds;Parent=MsG0580028291.01.T01
Chr5 CDS 77874084 77874244 77874084 ID=MsG0580028291.01.T01:cds;Parent=MsG0580028291.01.T01
Chr5 CDS 77873878 77874020 77873878 ID=MsG0580028291.01.T01:cds;Parent=MsG0580028291.01.T01
Chr5 CDS 77872205 77872206 77872205 ID=MsG0580028291.01.T01:cds;Parent=MsG0580028291.01.T01
Chr5 three_prime_UTR 77871998 77872204 77871998 ID=MsG0580028291.01.T01:three_prime_utr;Parent=MsG0580028291.01.T01
Gene Sequence

>MsG0580028291.01.T01

ATGGATTCTTTGTTGGATCAAGCTACTAGTACATGTTCTCACTGTGGTCGAGCTATTCCCGTTGCGAATGTTGATTTGCATTATGCTCATTGCTCAAGGAAACTTCAAAAATGCAAAGTTTGTGGTGATATGGTTCCTAGAAAAAATGCTGAGGATCACTATTTAACCACTCATGCGCCAGTTTCCTGTTCATTGTGCAGTGAGACAGTGGATCGTGATATCATAGATATCCATACAGGTGAAAACTGCCCTAAAAGGATTGTCACTTGTGACTTCTGTGAGTTCCCATTGCCAGCAATTGATCTAGCTGAGCATCAGGTAGTGCTTATGAAGAACTTTGGGAAGTATGCGGGAACCGAACAGAACTCTGTCAACTTTGTAACAAATATGTTAGACTTCGTGAAAGATACAATCATGAAGCCGGGTGCAATGGCATTCAAGATAGCACTGTGGGCTCTTCAAGGTAAGAAATATCACTATTCATAG
Protein sequence

>MsG0580028291.01.T01

MDSLLDQATSTCSHCGRAIPVANVDLHYAHCSRKLQKCKVCGDMVPRKNAEDHYLTTHAPVSCSLCSETVDRDIIDIHTGENCPKRIVTCDFCEFPLPAIDLAEHQVVLMKNFGKYAGTEQNSVNFVTNMLDFVKDTIMKPGAMAFKIALWALQGKKYHYS*