AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380015934.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380015934.01.T01 MTR_3g080080 93.931 379 18 2 1 375 1 378 0.0 679
MsG0380015934.01.T01 MTR_4g021570 31.522 276 155 10 56 320 6 258 5.50e-17 82.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380015934.01.T01 AT3G51980 55.348 374 161 2 3 372 8 379 7.67e-137 395
MsG0380015934.01.T01 AT5G02150 29.470 302 176 11 56 347 6 280 3.47e-17 82.0
MsG0380015934.01.T01 AT5G02150 29.470 302 176 11 56 347 6 280 3.47e-17 82.0
MsG0380015934.01.T01 AT3G09350 29.213 267 172 7 56 320 6 257 1.13e-15 78.2
MsG0380015934.01.T01 AT3G53800 27.922 308 165 8 56 329 6 290 6.33e-15 75.9
MsG0380015934.01.T01 AT3G53800 30.120 249 145 6 103 329 10 251 3.61e-14 73.2
MsG0380015934.01.T01 AT5G02150 32.710 214 129 7 135 347 42 241 5.15e-14 72.4
MsG0380015934.01.T01 AT3G09350 34.359 195 117 5 127 320 37 221 9.77e-13 68.9
MsG0380015934.01.T01 AT3G09350 34.359 195 117 5 127 320 37 221 9.77e-13 68.9
MsG0380015934.01.T01 AT3G09350 34.359 195 117 5 127 320 37 221 9.77e-13 68.9

Find 75 sgRNAs with CRISPR-Local

Find 221 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTTTAATGCCTTCTTCTA+TGG 0.201154 3:+76848488 None:intergenic
TTTAGGGACTTATGTGCTTT+AGG 0.269168 3:-76847536 MsG0380015934.01.T01:CDS
GAATAATGCGTCTACTTCTT+TGG 0.270695 3:-76850436 MsG0380015934.01.T01:CDS
ACTCTCAAGGTTGATAATTA+TGG 0.284619 3:-76848523 MsG0380015934.01.T01:CDS
GCAACTGCTGCATGGGTTCT+TGG 0.322183 3:-76849088 MsG0380015934.01.T01:CDS
AGCTGGAGGTTTGATGCTTC+AGG 0.334540 3:-76848403 MsG0380015934.01.T01:intron
GAACTTAATCACCATGATTC+TGG 0.337700 3:-76849118 MsG0380015934.01.T01:CDS
AGTGAGGTTGTTGTCTGTTT+CGG 0.341684 3:+76850911 None:intergenic
GAGTTGACATCCTTAGATTA+TGG 0.356023 3:-76847366 MsG0380015934.01.T01:three_prime_UTR
CGATGGCGGGTTTCCTTCAA+TGG 0.363526 3:-76850814 MsG0380015934.01.T01:CDS
TTGATAATTATGGTAAAATC+TGG 0.364174 3:-76848513 MsG0380015934.01.T01:CDS
CTGTTAGATTTAAACAAACT+TGG 0.368128 3:-76849163 MsG0380015934.01.T01:intron
ACAATTGTTGCATGATTTGA+TGG 0.390675 3:-76847492 MsG0380015934.01.T01:CDS
CTCTTTCCGACTCCGATGGC+GGG 0.393050 3:-76850827 MsG0380015934.01.T01:CDS
TCGACGGCAGTTGATAATAA+TGG 0.404340 3:+76850879 None:intergenic
TCAAATCTAGATGATGATAC+AGG 0.412030 3:+76847336 None:intergenic
AGATAGATACAGAGCTTTGT+TGG 0.429529 3:-76850412 MsG0380015934.01.T01:CDS
AGGGACAAGACCATAATCTA+AGG 0.431080 3:+76847356 None:intergenic
CATACCTGTTGCTGAAAAGT+TGG 0.441542 3:+76849046 None:intergenic
CAGCATCAAAATTGTGAGAA+AGG 0.443624 3:+76847306 None:intergenic
TTAAGAGTCTCTTGCAACTA+AGG 0.444194 3:-76847577 MsG0380015934.01.T01:CDS
TCTTGAGCTTGTTGAGCCAT+TGG 0.448659 3:-76850385 MsG0380015934.01.T01:CDS
TCGGAATAATTTAGCCAGTC+AGG 0.451248 3:-76848442 MsG0380015934.01.T01:CDS
CAATGGATAGCATGTTGCAC+TGG 0.464205 3:-76850797 MsG0380015934.01.T01:CDS
CCACAGACTTTAACAGATCC+TGG 0.468287 3:+76848154 None:intergenic
TTCAACCGACCTTGATCTCC+AGG 0.485779 3:-76848118 MsG0380015934.01.T01:CDS
TGCAACATGCTATCCATTGA+AGG 0.490686 3:+76850801 None:intergenic
CGACCTTGATCTCCAGGAAA+AGG 0.496260 3:-76848112 MsG0380015934.01.T01:intron
TTAGATTTAAACAAACTTGG+TGG 0.500809 3:-76849160 MsG0380015934.01.T01:intron
GTTGTTGTCTGTTTCGGCGA+CGG 0.505085 3:+76850917 None:intergenic
GCATGATTTGATGGCGGATG+AGG 0.511123 3:-76847483 MsG0380015934.01.T01:CDS
AACAAAGATACAAGCAAGAA+GGG 0.512016 3:+76851001 None:intergenic
TAGATTTAAACAAACTTGGT+GGG 0.516287 3:-76849159 MsG0380015934.01.T01:CDS
GAGTCGGAAAGAGCGGCATC+CGG 0.516582 3:+76850837 None:intergenic
GCCGCTCTTTCCGACTCCGA+TGG 0.518427 3:-76850831 MsG0380015934.01.T01:CDS
CTATTCCAGGTCTTGGAACT+CGG 0.522629 3:-76848549 MsG0380015934.01.T01:intron
AAACAAAGATACAAGCAAGA+AGG 0.524186 3:+76851000 None:intergenic
ACTCGCTCTCATACTCTTCA+CGG 0.526349 3:-76850946 MsG0380015934.01.T01:CDS
TTACCATTTGCATTATCCAA+TGG 0.528194 3:+76850369 None:intergenic
GCTCTTTCCGACTCCGATGG+CGG 0.529221 3:-76850828 MsG0380015934.01.T01:CDS
GAATTGTTCTATGCTGAAGC+TGG 0.531227 3:-76848420 MsG0380015934.01.T01:CDS
ACGCTGTTTCAGCTTTGACT+CGG 0.535198 3:-76848461 MsG0380015934.01.T01:CDS
TATTAGAGCAACTGCTGCAT+GGG 0.537407 3:-76849095 MsG0380015934.01.T01:CDS
AAACATTTACCATAGAAAGC+TGG 0.539602 3:-76847411 MsG0380015934.01.T01:CDS
AAATCTGGTTCCATAGAAGA+AGG 0.545793 3:-76848498 MsG0380015934.01.T01:CDS
CGGAAAGAGCGGCATCCGGC+GGG 0.546815 3:+76850841 None:intergenic
GAGAGACTATGTAATGGATG+TGG 0.547171 3:-76847456 MsG0380015934.01.T01:CDS
GTATTAGAGCAACTGCTGCA+TGG 0.549978 3:-76849096 MsG0380015934.01.T01:CDS
TTGCTCTAATACCAGAATCA+TGG 0.552550 3:+76849107 None:intergenic
GGCATCCGGCGGGAGTAGAT+CGG 0.560168 3:+76850851 None:intergenic
TGATATCAAACTTCGGAGGA+AGG 0.564399 3:-76848253 MsG0380015934.01.T01:CDS
AGCATAGAACAATTCCTGAC+TGG 0.564526 3:+76848428 None:intergenic
GAGCCATTGGATAATGCAAA+TGG 0.568060 3:-76850372 MsG0380015934.01.T01:intron
GGATCAGAGAGACTATGTAA+TGG 0.571622 3:-76847462 MsG0380015934.01.T01:CDS
TGGAACTCGGTGTACTCTCA+AGG 0.571684 3:-76848536 MsG0380015934.01.T01:CDS
AGGAAACCCGCCATCGGAGT+CGG 0.575203 3:+76850821 None:intergenic
AGTTGATAATAATGGCTGAC+GGG 0.581532 3:+76850887 None:intergenic
CCAGGATCTGTTAAAGTCTG+TGG 0.581747 3:-76848154 MsG0380015934.01.T01:CDS
AATGGATAGCATGTTGCACT+GGG 0.584422 3:-76850796 MsG0380015934.01.T01:CDS
TTGTTCTATGCTGAAGCTGG+AGG 0.589290 3:-76848417 MsG0380015934.01.T01:CDS
TCGGAAAGAGCGGCATCCGG+CGG 0.589412 3:+76850840 None:intergenic
GGAAAATGTTCGTATTGAAG+TGG 0.592134 3:-76847435 MsG0380015934.01.T01:CDS
CAAGTATTGATATCAAACTT+CGG 0.604972 3:-76848260 MsG0380015934.01.T01:CDS
GCCATCGGAGTCGGAAAGAG+CGG 0.605513 3:+76850830 None:intergenic
CAGTTGATAATAATGGCTGA+CGG 0.608320 3:+76850886 None:intergenic
CAAATCTAGATGATGATACA+GGG 0.614135 3:+76847337 None:intergenic
ATAATGGCTGACGGGAAGTG+AGG 0.642518 3:+76850895 None:intergenic
TAAATCAGTCAATAGAAGCA+CGG 0.644107 3:+76848230 None:intergenic
GAGTAGATCGGATTCATCGA+CGG 0.645125 3:+76850863 None:intergenic
CATTGAAGGAAACCCGCCAT+CGG 0.646434 3:+76850815 None:intergenic
TGAATCCGATCTACTCCCGC+CGG 0.648772 3:-76850856 MsG0380015934.01.T01:CDS
CAAACTTGGTGGGCTTCATG+CGG 0.669848 3:-76849149 MsG0380015934.01.T01:CDS
ATTGTTGCATGATTTGATGG+CGG 0.681664 3:-76847489 MsG0380015934.01.T01:CDS
GTATTGATATCAAACTTCGG+AGG 0.727448 3:-76848257 MsG0380015934.01.T01:CDS
CGCTCTCATACTCTTCACGG+CGG 0.754940 3:-76850943 MsG0380015934.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAATAATTTATGTACTATT+TGG + Chr3:76848047-76848066 None:intergenic 10.0%
!! GATAATATTAAAACTTAGAT+AGG + Chr3:76849843-76849862 None:intergenic 15.0%
!! TGTATAGTTATTAATTATCA+CGG - Chr3:76847453-76847472 MsG0380015934.01.T01:CDS 15.0%
!! TTGATTTACTTTATTATCAA+AGG - Chr3:76850439-76850458 MsG0380015934.01.T01:CDS 15.0%
!! TTTATTTATTTATGTGATTG+TGG - Chr3:76847682-76847701 MsG0380015934.01.T01:intron 15.0%
!!! CTTTGTTTTCTATAATTAAA+TGG - Chr3:76847232-76847251 MsG0380015934.01.T01:three_prime_UTR 15.0%
!!! TAAACAAAAATGTACTTTTT+AGG - Chr3:76848200-76848219 MsG0380015934.01.T01:CDS 15.0%
!!! TATTGATACTTGAATTTTTT+AGG - Chr3:76849919-76849938 MsG0380015934.01.T01:intron 15.0%
!! ACATTTGAGAACAAAAATTA+GGG - Chr3:76850940-76850959 MsG0380015934.01.T01:CDS 20.0%
!! CATTGAATACATAATGTATT+TGG - Chr3:76848225-76848244 MsG0380015934.01.T01:CDS 20.0%
!! TATGTATTCAAATATAGACT+TGG - Chr3:76848769-76848788 MsG0380015934.01.T01:intron 20.0%
!! TGAATATTATGAACAAATGA+CGG + Chr3:76848960-76848979 None:intergenic 20.0%
!! TTCAAATATCTCATAAGTAT+CGG + Chr3:76849360-76849379 None:intergenic 20.0%
!!! ACTATAATGTTTTTTCACTT+GGG - Chr3:76847901-76847920 MsG0380015934.01.T01:intron 20.0%
!!! ATTTATGTACTATTTGGTTT+AGG + Chr3:76848041-76848060 None:intergenic 20.0%
!!! GAATTTTTTAGGATATTTTG+AGG - Chr3:76849930-76849949 MsG0380015934.01.T01:intron 20.0%
!!! TACTATAATGTTTTTTCACT+TGG - Chr3:76847900-76847919 MsG0380015934.01.T01:intron 20.0%
!!! TCAAAATGTTTTGTTTTTCT+CGG + Chr3:76850230-76850249 None:intergenic 20.0%
!!! TCTCAAAATCTGTTTTTTTT+AGG - Chr3:76848473-76848492 MsG0380015934.01.T01:CDS 20.0%
!!! TTGATAATTATGGTAAAATC+TGG - Chr3:76849704-76849723 MsG0380015934.01.T01:intron 20.0%
!!! TTTTTGTTTATAAATGTGAC+CGG + Chr3:76848190-76848209 None:intergenic 20.0%
! AAAATAAGTAGAGGATACTA+GGG + Chr3:76849397-76849416 None:intergenic 25.0%
! AAGTATAGATATAAGAAAGC+AGG + Chr3:76849441-76849460 None:intergenic 25.0%
! AGTATATAAAGAACTTCACA+TGG + Chr3:76848925-76848944 None:intergenic 25.0%
! ATAGTTATTAATTATCACGG+TGG - Chr3:76847456-76847475 MsG0380015934.01.T01:CDS 25.0%
! CATTCAATGCTTAATGTATT+TGG + Chr3:76848263-76848282 None:intergenic 25.0%
! CATTTGAGAACAAAAATTAG+GGG - Chr3:76850941-76850960 MsG0380015934.01.T01:CDS 25.0%
! CTGATATAAATCTTAGTAAG+CGG - Chr3:76849576-76849595 MsG0380015934.01.T01:intron 25.0%
! CTGTTAGATTTAAACAAACT+TGG - Chr3:76849054-76849073 MsG0380015934.01.T01:CDS 25.0%
! GACATTTGAGAACAAAAATT+AGG - Chr3:76850939-76850958 MsG0380015934.01.T01:CDS 25.0%
! GTATATAAAGAACTTCACAT+GGG + Chr3:76848924-76848943 None:intergenic 25.0%
! GTTAGTATAATTATTCTCTG+AGG + Chr3:76849277-76849296 None:intergenic 25.0%
! TAGATTTAAACAAACTTGGT+GGG - Chr3:76849058-76849077 MsG0380015934.01.T01:CDS 25.0%
! TCACCAAATAGAAAAATAGA+CGG + Chr3:76851005-76851024 None:intergenic 25.0%
! TTAGATTTAAACAAACTTGG+TGG - Chr3:76849057-76849076 MsG0380015934.01.T01:CDS 25.0%
! TTCTTTATATACTGTAGAAG+TGG - Chr3:76848932-76848951 MsG0380015934.01.T01:intron 25.0%
!! AATTTTCATCAATTCAGCAT+CGG + Chr3:76847747-76847766 None:intergenic 25.0%
!! TCAGACCTTAAATACTTTTA+AGG - Chr3:76848594-76848613 MsG0380015934.01.T01:intron 25.0%
!! TTTTTGCTTATAAATGTGAC+CGG - Chr3:76848298-76848317 MsG0380015934.01.T01:intron 25.0%
!!! AATACTTTTAAGGCTATGTT+TGG - Chr3:76848604-76848623 MsG0380015934.01.T01:intron 25.0%
!!! ATACCGTCTATTTTTCTATT+TGG - Chr3:76850999-76851018 MsG0380015934.01.T01:five_prime_UTR 25.0%
!!! CAAGTATTGATATCAAACTT+CGG - Chr3:76849957-76849976 MsG0380015934.01.T01:intron 25.0%
!!! CATAGCCTTAAAAGTATTTA+AGG + Chr3:76848602-76848621 None:intergenic 25.0%
!!! GACTGTTTTTTTCTTTTTCT+AGG - Chr3:76848126-76848145 MsG0380015934.01.T01:CDS 25.0%
!!! GCAAATTTTAGTAAAGTTAG+TGG - Chr3:76848148-76848167 MsG0380015934.01.T01:CDS 25.0%
!!! TTGTTTTTGCTTTTTGTGTA+TGG - Chr3:76847508-76847527 MsG0380015934.01.T01:CDS 25.0%
AAACAAAGATACAAGCAAGA+AGG + Chr3:76847220-76847239 None:intergenic 30.0%
AAACATTTACCATAGAAAGC+TGG - Chr3:76850806-76850825 MsG0380015934.01.T01:CDS 30.0%
AAATAAGTAGAGGATACTAG+GGG + Chr3:76849396-76849415 None:intergenic 30.0%
AACAAAGATACAAGCAAGAA+GGG + Chr3:76847219-76847238 None:intergenic 30.0%
ACAATTGTTGCATGATTTGA+TGG - Chr3:76850725-76850744 MsG0380015934.01.T01:intron 30.0%
ACACAAATTCAACAAGTCAT+AGG + Chr3:76850377-76850396 None:intergenic 30.0%
ACATTAGAAGAACAATCTCA+TGG + Chr3:76850265-76850284 None:intergenic 30.0%
ACTTCTTGGATGTATTAAAC+AGG - Chr3:76850605-76850624 MsG0380015934.01.T01:intron 30.0%
AGATCCTGGTTATTGAAAAA+TGG + Chr3:76850052-76850071 None:intergenic 30.0%
ATAGATATAAGAAAGCAGGT+TGG + Chr3:76849437-76849456 None:intergenic 30.0%
CAAATCTAGATGATGATACA+GGG + Chr3:76850883-76850902 None:intergenic 30.0%
CACAAATTCAACAAGTCATA+GGG + Chr3:76850376-76850395 None:intergenic 30.0%
CTTGTTGAATTTGTGTGAAA+TGG - Chr3:76850381-76850400 MsG0380015934.01.T01:CDS 30.0%
GAAAATAAGTAGAGGATACT+AGG + Chr3:76849398-76849417 None:intergenic 30.0%
GGATTGAATTACAGAAATGA+GGG + Chr3:76850332-76850351 None:intergenic 30.0%
GTAAATTGTCTCCTGTAAAT+AGG - Chr3:76848080-76848099 MsG0380015934.01.T01:intron 30.0%
TAAATCAGTCAATAGAAGCA+CGG + Chr3:76849990-76850009 None:intergenic 30.0%
TAGATATAAGAAAGCAGGTT+GGG + Chr3:76849436-76849455 None:intergenic 30.0%
TCAAATCTAGATGATGATAC+AGG + Chr3:76850884-76850903 None:intergenic 30.0%
TCAGCTAACATATATCAAAG+AGG + Chr3:76848559-76848578 None:intergenic 30.0%
TGAAATGGTAAATGTACTTG+TGG - Chr3:76850396-76850415 MsG0380015934.01.T01:CDS 30.0%
TGGATTGAATTACAGAAATG+AGG + Chr3:76850333-76850352 None:intergenic 30.0%
TTACCATTTGCATTATCCAA+TGG + Chr3:76847851-76847870 None:intergenic 30.0%
TTATATCAGAATAAGCGCAT+AGG + Chr3:76849565-76849584 None:intergenic 30.0%
TTATGCATGCACTATTAAAC+AGG + Chr3:76849018-76849037 None:intergenic 30.0%
! GGTGTTACATTCATGATTTA+TGG - Chr3:76849193-76849212 MsG0380015934.01.T01:intron 30.0%
!! ACTCTCAAGGTTGATAATTA+TGG - Chr3:76849694-76849713 MsG0380015934.01.T01:intron 30.0%
!!! AAGCGGTTGTTTTTTAACAA+AGG - Chr3:76849593-76849612 MsG0380015934.01.T01:intron 30.0%
!!! GCTGATTCTTTTAACTTTTC+AGG + Chr3:76847550-76847569 None:intergenic 30.0%
!!! GGTGTTTTAACAGGAAATAA+TGG - Chr3:76847703-76847722 MsG0380015934.01.T01:intron 30.0%
!!! TTGCTTTTTGTGTATGGTTT+AGG - Chr3:76847514-76847533 MsG0380015934.01.T01:CDS 30.0%
!!! TTTTGTTTTAATACTCCCTC+CGG - Chr3:76847951-76847970 MsG0380015934.01.T01:intron 30.0%
AATGAAACAGTTTGCATGAG+AGG + Chr3:76849534-76849553 None:intergenic 35.0%
ACATTTGCATCACACAGATA+AGG + Chr3:76850190-76850209 None:intergenic 35.0%
ACTGTAATACAACTGAGAGA+AGG + Chr3:76848852-76848871 None:intergenic 35.0%
AGAATTGCAATGGATGCAAA+AGG - Chr3:76849334-76849353 MsG0380015934.01.T01:intron 35.0%
AGCTCAACATGAAACACAAA+AGG + Chr3:76850576-76850595 None:intergenic 35.0%
ATTGTTGCATGATTTGATGG+CGG - Chr3:76850728-76850747 MsG0380015934.01.T01:intron 35.0%
ATTTCAACTATTCCAGGTCT+TGG - Chr3:76849661-76849680 MsG0380015934.01.T01:intron 35.0%
CAATGCAGGAAAATAAGTAG+AGG + Chr3:76849406-76849425 None:intergenic 35.0%
CAGCATCAAAATTGTGAGAA+AGG + Chr3:76850914-76850933 None:intergenic 35.0%
CTCAACATGAAACACAAAAG+GGG + Chr3:76850574-76850593 None:intergenic 35.0%
CTTTCTCTTGTAAATGAGAC+CGG + Chr3:76847973-76847992 None:intergenic 35.0%
GAAAACTATCATACTCACTC+CGG + Chr3:76848320-76848339 None:intergenic 35.0%
GAACTTAATCACCATGATTC+TGG - Chr3:76849099-76849118 MsG0380015934.01.T01:CDS 35.0%
GAAGAACAATCTCATGGAAA+AGG + Chr3:76850259-76850278 None:intergenic 35.0%
GAATAATGCGTCTACTTCTT+TGG - Chr3:76847781-76847800 MsG0380015934.01.T01:intron 35.0%
GACCTGGAATAGTTGAAATT+TGG + Chr3:76849660-76849679 None:intergenic 35.0%
GAGTTGACATCCTTAGATTA+TGG - Chr3:76850851-76850870 MsG0380015934.01.T01:CDS 35.0%
GCTCAACATGAAACACAAAA+GGG + Chr3:76850575-76850594 None:intergenic 35.0%
GGAAAATGTTCGTATTGAAG+TGG - Chr3:76850782-76850801 MsG0380015934.01.T01:intron 35.0%
TCCTGGTTATTGAAAAATGG+TGG + Chr3:76850049-76850068 None:intergenic 35.0%
TCTTGCCTAAGTAGTTTGAT+CGG + Chr3:76848383-76848402 None:intergenic 35.0%
TGCACAAAAAGAACTACAGA+AGG + Chr3:76850541-76850560 None:intergenic 35.0%
TGCCAAATTTCAACTATTCC+AGG - Chr3:76849655-76849674 MsG0380015934.01.T01:intron 35.0%
TGCTTTAATGCCTTCTTCTA+TGG + Chr3:76849732-76849751 None:intergenic 35.0%
TGTTTATAAATGTGACCGGA+GGG + Chr3:76848186-76848205 None:intergenic 35.0%
TTAAGAGTCTCTTGCAACTA+AGG - Chr3:76850640-76850659 MsG0380015934.01.T01:CDS 35.0%
TTGCTCTAATACCAGAATCA+TGG + Chr3:76849113-76849132 None:intergenic 35.0%
TTGTTTATAAATGTGACCGG+AGG + Chr3:76848187-76848206 None:intergenic 35.0%
TTTAGGGACTTATGTGCTTT+AGG - Chr3:76850681-76850700 MsG0380015934.01.T01:CDS 35.0%
! AAATCTGGTTCCATAGAAGA+AGG - Chr3:76849719-76849738 MsG0380015934.01.T01:intron 35.0%
! AAGGAGTATGATCAGTAGAA+TGG - Chr3:76850458-76850477 MsG0380015934.01.T01:CDS 35.0%
! AGATAGATACAGAGCTTTGT+TGG - Chr3:76847805-76847824 MsG0380015934.01.T01:intron 35.0%
! CACTAAAGCTCGAGTTTTTA+GGG - Chr3:76850665-76850684 MsG0380015934.01.T01:CDS 35.0%
! GAGTGAGTATGATAGTTTTC+AGG - Chr3:76848320-76848339 MsG0380015934.01.T01:intron 35.0%
! GTATTGATATCAAACTTCGG+AGG - Chr3:76849960-76849979 MsG0380015934.01.T01:intron 35.0%
! TCTTGCTCTGTTTTGTGTTA+AGG + Chr3:76848807-76848826 None:intergenic 35.0%
! TGTGTTTCATGTTGAGCTTT+TGG - Chr3:76850578-76850597 MsG0380015934.01.T01:intron 35.0%
! TTCTAATAGTCACCTTTTCC+TGG + Chr3:76850120-76850139 None:intergenic 35.0%
! TTTTGTGTTAAGGTGCGTTT+GGG + Chr3:76848797-76848816 None:intergenic 35.0%
!! ACCACCATTTTTCAATAACC+AGG - Chr3:76850045-76850064 MsG0380015934.01.T01:intron 35.0%
!! ACGTTGAGATTTTGAGAACA+TGG + Chr3:76850353-76850372 None:intergenic 35.0%
!! AGTTGATAATAATGGCTGAC+GGG + Chr3:76847333-76847352 None:intergenic 35.0%
!! CAGTTGATAATAATGGCTGA+CGG + Chr3:76847334-76847353 None:intergenic 35.0%
!! CTTTTAAGAAATACTCCCTC+CGG + Chr3:76848107-76848126 None:intergenic 35.0%
!!! CTTTTAAGGCTATGTTTGGA+TGG - Chr3:76848608-76848627 MsG0380015934.01.T01:intron 35.0%
!!! TGTGATTGTGGTGTTTTAAC+AGG - Chr3:76847694-76847713 MsG0380015934.01.T01:intron 35.0%
AACACAAAACAGAGCAAGAG+TGG - Chr3:76848808-76848827 MsG0380015934.01.T01:intron 40.0%
AATGGATAGCATGTTGCACT+GGG - Chr3:76847421-76847440 MsG0380015934.01.T01:CDS 40.0%
AGCATAGAACAATTCCTGAC+TGG + Chr3:76849792-76849811 None:intergenic 40.0%
AGGGACAAGACCATAATCTA+AGG + Chr3:76850864-76850883 None:intergenic 40.0%
AGTGAGGTTGTTGTCTGTTT+CGG + Chr3:76847309-76847328 None:intergenic 40.0%
ATTACCAGTGAGACAAGTAC+TGG + Chr3:76849478-76849497 None:intergenic 40.0%
CATACCTGTTGCTGAAAAGT+TGG + Chr3:76849174-76849193 None:intergenic 40.0%
GAATTGTTCTATGCTGAAGC+TGG - Chr3:76849797-76849816 MsG0380015934.01.T01:intron 40.0%
GAGCCATTGGATAATGCAAA+TGG - Chr3:76847845-76847864 MsG0380015934.01.T01:intron 40.0%
GATCAGTAGAATGGAAGTGA+GGG - Chr3:76850467-76850486 MsG0380015934.01.T01:CDS 40.0%
GGATCAGAGAGACTATGTAA+TGG - Chr3:76850755-76850774 MsG0380015934.01.T01:intron 40.0%
TAAGGCTATGTTTGGATGGA+GGG - Chr3:76848612-76848631 MsG0380015934.01.T01:intron 40.0%
TAGTTTGATCGGTGAGCTAA+GGG + Chr3:76848372-76848391 None:intergenic 40.0%
TATTAGAGCAACTGCTGCAT+GGG - Chr3:76849122-76849141 MsG0380015934.01.T01:CDS 40.0%
TCGGAATAATTTAGCCAGTC+AGG - Chr3:76849775-76849794 MsG0380015934.01.T01:intron 40.0%
TGATATCAAACTTCGGAGGA+AGG - Chr3:76849964-76849983 MsG0380015934.01.T01:intron 40.0%
TGATCAGTAGAATGGAAGTG+AGG - Chr3:76850466-76850485 MsG0380015934.01.T01:CDS 40.0%
TGCAACATGCTATCCATTGA+AGG + Chr3:76847419-76847438 None:intergenic 40.0%
TGGTTATGAATTACTCCCTC+CGG - Chr3:76848168-76848187 MsG0380015934.01.T01:CDS 40.0%
TTAAGGCTATGTTTGGATGG+AGG - Chr3:76848611-76848630 MsG0380015934.01.T01:intron 40.0%
TTACCAGTGAGACAAGTACT+GGG + Chr3:76849477-76849496 None:intergenic 40.0%
TTGTCTCCTGTAAATAGGAC+CGG - Chr3:76848085-76848104 MsG0380015934.01.T01:intron 40.0%
! CAACTTTTCAGCAACAGGTA+TGG - Chr3:76849172-76849191 MsG0380015934.01.T01:intron 40.0%
! CAATCCAACTTTTCAGCAAC+AGG - Chr3:76849167-76849186 MsG0380015934.01.T01:intron 40.0%
! CCACTAAAGCTCGAGTTTTT+AGG - Chr3:76850664-76850683 MsG0380015934.01.T01:CDS 40.0%
! CCTAAAAACTCGAGCTTTAG+TGG + Chr3:76850667-76850686 None:intergenic 40.0%
! GTTTTGTGTTAAGGTGCGTT+TGG + Chr3:76848798-76848817 None:intergenic 40.0%
! TTTTTCTCGGTGAGAGTTGA+TGG + Chr3:76850217-76850236 None:intergenic 40.0%
!! ACTGCTTTTCCAGCTTTCTA+TGG + Chr3:76850818-76850837 None:intergenic 40.0%
!! GAGAGACTATGTAATGGATG+TGG - Chr3:76850761-76850780 MsG0380015934.01.T01:intron 40.0%
!! TAGTTTTCAGGATCGTACCT+AGG - Chr3:76848332-76848351 MsG0380015934.01.T01:intron 40.0%
!! TCGACGGCAGTTGATAATAA+TGG + Chr3:76847341-76847360 None:intergenic 40.0%
!!! GAGCTTTTGGTTTGACTTCT+TGG - Chr3:76850591-76850610 MsG0380015934.01.T01:intron 40.0%
!!! TGACGCTTTTGAAGTTCAGT+CGG + Chr3:76847595-76847614 None:intergenic 40.0%
!!! TTTGGATGGAGGGTTTTAGA+GGG - Chr3:76848622-76848641 MsG0380015934.01.T01:intron 40.0%
ACTCGCTCTCATACTCTTCA+CGG - Chr3:76847271-76847290 MsG0380015934.01.T01:three_prime_UTR 45.0%
AGAGTGGTAGATCCCAATGT+TGG - Chr3:76848824-76848843 MsG0380015934.01.T01:intron 45.0%
ATTCTACAACAGCGCAACAC+TGG + Chr3:76849319-76849338 None:intergenic 45.0%
CAATGGATAGCATGTTGCAC+TGG - Chr3:76847420-76847439 MsG0380015934.01.T01:CDS 45.0%
CCACAGACTTTAACAGATCC+TGG + Chr3:76850066-76850085 None:intergenic 45.0%
CCAGGATCTGTTAAAGTCTG+TGG - Chr3:76850063-76850082 MsG0380015934.01.T01:intron 45.0%
CTATTCCAGGTCTTGGAACT+CGG - Chr3:76849668-76849687 MsG0380015934.01.T01:intron 45.0%
CTCTTGTAAATGAGACCGGA+GGG + Chr3:76847969-76847988 None:intergenic 45.0%
GAGTAGATCGGATTCATCGA+CGG + Chr3:76847357-76847376 None:intergenic 45.0%
GCGCTGTTGTAGAATTGCAA+TGG - Chr3:76849324-76849343 MsG0380015934.01.T01:intron 45.0%
GCTCACCGATCAAACTACTT+AGG - Chr3:76848375-76848394 MsG0380015934.01.T01:intron 45.0%
GTAGAATGGAAGTGAGGGAT+TGG - Chr3:76850472-76850491 MsG0380015934.01.T01:CDS 45.0%
GTAGTTTGATCGGTGAGCTA+AGG + Chr3:76848373-76848392 None:intergenic 45.0%
GTATTAGAGCAACTGCTGCA+TGG - Chr3:76849121-76849140 MsG0380015934.01.T01:CDS 45.0%
TCTCTTGTAAATGAGACCGG+AGG + Chr3:76847970-76847989 None:intergenic 45.0%
TTGTTCTATGCTGAAGCTGG+AGG - Chr3:76849800-76849819 MsG0380015934.01.T01:intron 45.0%
TTTGCATGAGAGGCAGTTGA+GGG + Chr3:76849524-76849543 None:intergenic 45.0%
! ACGCTGTTTCAGCTTTGACT+CGG - Chr3:76849756-76849775 MsG0380015934.01.T01:intron 45.0%
! CTTTTCCTGGAGATCAAGGT+CGG + Chr3:76850107-76850126 None:intergenic 45.0%
! TCACCTTTTCCTGGAGATCA+AGG + Chr3:76850111-76850130 None:intergenic 45.0%
!! GTTTGGATGGAGGGTTTTAG+AGG - Chr3:76848621-76848640 MsG0380015934.01.T01:intron 45.0%
!! TCTTGAGCTTGTTGAGCCAT+TGG - Chr3:76847832-76847851 MsG0380015934.01.T01:intron 45.0%
!! TGAGAGAAGGCACCAACATT+GGG + Chr3:76848839-76848858 None:intergenic 45.0%
!!! TTGGATGGAGGGTTTTAGAG+GGG - Chr3:76848623-76848642 MsG0380015934.01.T01:intron 45.0%
AGCTGGAGGTTTGATGCTTC+AGG - Chr3:76849814-76849833 MsG0380015934.01.T01:intron 50.0%
ATAATGGCTGACGGGAAGTG+AGG + Chr3:76847325-76847344 None:intergenic 50.0%
ATCGTACCTAGGACCTCCTT+CGG - Chr3:76848343-76848362 MsG0380015934.01.T01:intron 50.0%
CATTGAAGGAAACCCGCCAT+CGG + Chr3:76847405-76847424 None:intergenic 50.0%
CGACCTTGATCTCCAGGAAA+AGG - Chr3:76850105-76850124 MsG0380015934.01.T01:intron 50.0%
CTCCTGTAAATAGGACCGGA+GGG - Chr3:76848089-76848108 MsG0380015934.01.T01:intron 50.0%
GATCCCAGTACTTGTCTCAC+TGG - Chr3:76849471-76849490 MsG0380015934.01.T01:intron 50.0%
GGTTGGGAGAAGATCAATGC+AGG + Chr3:76849420-76849439 None:intergenic 50.0%
GTTGTTGTCTGTTTCGGCGA+CGG + Chr3:76847303-76847322 None:intergenic 50.0%
GTTTGCATGAGAGGCAGTTG+AGG + Chr3:76849525-76849544 None:intergenic 50.0%
TCTCCTGTAAATAGGACCGG+AGG - Chr3:76848088-76848107 MsG0380015934.01.T01:intron 50.0%
TTCAACCGACCTTGATCTCC+AGG - Chr3:76850099-76850118 MsG0380015934.01.T01:intron 50.0%
TTGCATGAGAGGCAGTTGAG+GGG + Chr3:76849523-76849542 None:intergenic 50.0%
!! CAAACTTGGTGGGCTTCATG+CGG - Chr3:76849068-76849087 MsG0380015934.01.T01:CDS 50.0%
!! CTGAGAGAAGGCACCAACAT+TGG + Chr3:76848840-76848859 None:intergenic 50.0%
!! GCATGATTTGATGGCGGATG+AGG - Chr3:76850734-76850753 MsG0380015934.01.T01:intron 50.0%
!! TGGAACTCGGTGTACTCTCA+AGG - Chr3:76849681-76849700 MsG0380015934.01.T01:intron 50.0%
CGCTCTCATACTCTTCACGG+CGG - Chr3:76847274-76847293 MsG0380015934.01.T01:three_prime_UTR 55.0%
CTCCCTCCGGTCCTATTTAC+AGG + Chr3:76848094-76848113 None:intergenic 55.0%
GCAACTGCTGCATGGGTTCT+TGG - Chr3:76849129-76849148 MsG0380015934.01.T01:CDS 55.0%
GTACACCGAGTTCCAAGACC+TGG + Chr3:76849676-76849695 None:intergenic 55.0%
TGAATCCGATCTACTCCCGC+CGG - Chr3:76847361-76847380 MsG0380015934.01.T01:three_prime_UTR 55.0%
! AGGATACTAGGGGAGAGTGC+AGG + Chr3:76849386-76849405 None:intergenic 55.0%
! GGATACTAGGGGAGAGTGCA+GGG + Chr3:76849385-76849404 None:intergenic 55.0%
!! CGATGGCGGGTTTCCTTCAA+TGG - Chr3:76847403-76847422 MsG0380015934.01.T01:CDS 55.0%
!!! GATGGAGGGTTTTAGAGGGG+AGG - Chr3:76848626-76848645 MsG0380015934.01.T01:intron 55.0%
AGGAAACCCGCCATCGGAGT+CGG + Chr3:76847399-76847418 None:intergenic 60.0%
CTCTTTCCGACTCCGATGGC+GGG - Chr3:76847390-76847409 MsG0380015934.01.T01:exon 60.0%
GAGCTAAGGGACACCGAAGG+AGG + Chr3:76848359-76848378 None:intergenic 60.0%
GAGTCGGAAAGAGCGGCATC+CGG + Chr3:76847383-76847402 None:intergenic 60.0%
GCCATCGGAGTCGGAAAGAG+CGG + Chr3:76847390-76847409 None:intergenic 60.0%
GCTCTTTCCGACTCCGATGG+CGG - Chr3:76847389-76847408 MsG0380015934.01.T01:exon 60.0%
GGTGAGCTAAGGGACACCGA+AGG + Chr3:76848362-76848381 None:intergenic 60.0%
GCCGCTCTTTCCGACTCCGA+TGG - Chr3:76847386-76847405 MsG0380015934.01.T01:exon 65.0%
GGCATCCGGCGGGAGTAGAT+CGG + Chr3:76847369-76847388 None:intergenic 65.0%
GGGACACCGAAGGAGGTCCT+AGG + Chr3:76848352-76848371 None:intergenic 65.0%
TCGGAAAGAGCGGCATCCGG+CGG + Chr3:76847380-76847399 None:intergenic 65.0%
CGGAAAGAGCGGCATCCGGC+GGG + Chr3:76847379-76847398 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr3 gene 76847187 76851052 76847187 ID=MsG0380015934.01;Name=MsG0380015934.01
Chr3 mRNA 76847187 76851052 76847187 ID=MsG0380015934.01.T01;Parent=MsG0380015934.01;Name=MsG0380015934.01.T01;_AED=0.45;_eAED=0.45;_QI=64|1|1|1|1|1|7|213|375
Chr3 exon 76847187 76847612 76847187 ID=MsG0380015934.01.T01:exon:1265;Parent=MsG0380015934.01.T01
Chr3 exon 76848113 76848298 76848113 ID=MsG0380015934.01.T01:exon:1264;Parent=MsG0380015934.01.T01
Chr3 exon 76848404 76848562 76848404 ID=MsG0380015934.01.T01:exon:1263;Parent=MsG0380015934.01.T01
Chr3 exon 76849051 76849178 76849051 ID=MsG0380015934.01.T01:exon:1262;Parent=MsG0380015934.01.T01
Chr3 exon 76850373 76850523 76850373 ID=MsG0380015934.01.T01:exon:1261;Parent=MsG0380015934.01.T01
Chr3 exon 76850612 76850703 76850612 ID=MsG0380015934.01.T01:exon:1260;Parent=MsG0380015934.01.T01
Chr3 exon 76850790 76851052 76850790 ID=MsG0380015934.01.T01:exon:1259;Parent=MsG0380015934.01.T01
Chr3 five_prime_UTR 76850989 76851052 76850989 ID=MsG0380015934.01.T01:five_prime_utr;Parent=MsG0380015934.01.T01
Chr3 CDS 76850790 76850988 76850790 ID=MsG0380015934.01.T01:cds;Parent=MsG0380015934.01.T01
Chr3 CDS 76850612 76850703 76850612 ID=MsG0380015934.01.T01:cds;Parent=MsG0380015934.01.T01
Chr3 CDS 76850373 76850523 76850373 ID=MsG0380015934.01.T01:cds;Parent=MsG0380015934.01.T01
Chr3 CDS 76849051 76849178 76849051 ID=MsG0380015934.01.T01:cds;Parent=MsG0380015934.01.T01
Chr3 CDS 76848404 76848562 76848404 ID=MsG0380015934.01.T01:cds;Parent=MsG0380015934.01.T01
Chr3 CDS 76848113 76848298 76848113 ID=MsG0380015934.01.T01:cds;Parent=MsG0380015934.01.T01
Chr3 CDS 76847400 76847612 76847400 ID=MsG0380015934.01.T01:cds;Parent=MsG0380015934.01.T01
Chr3 three_prime_UTR 76847187 76847399 76847187 ID=MsG0380015934.01.T01:three_prime_utr;Parent=MsG0380015934.01.T01
Gene Sequence

>MsG0380015934.01.T01

ATGGAGCGAATTACACTCTTACTCGCTCTCATACTCTTCACGGCGGCTGCCGTCGCCGAAACAGACAACAACCTCACTTCCCGTCAGCCATTATTATCAACTGCCGTCGATGAATCCGATCTACTCCCGCCGGATGCCGCTCTTTCCGACTCCGATGGCGGGTTTCCTTCAATGGATAGCATGTTGCACTGGGCAATAAGTCATTCTGATCCTGAAAAGTTAAAAGAATCAGCACAATCTCATCAACAATTATCACCGACTGAACTTCAAAAGCGTCAATTAGAAATCAAAGAAATAATGGAGAAAACAAGAATGTTATCCGATGCTGAATTGATGAAAATTTCTATAAAAGACTTGAATAATGCGTCTACTTCTTTGGAAGATAGATACAGAGCTTTGTTGGAGCTTCTTGAGCTTGTTGAGCCATTGGATAATGCAAATGATTTAAACAAACTTGGTGGGCTTCATGCGGTCACACAAGAACTTAATCACCATGATTCTGGTATTAGAGCAACTGCTGCATGGGTTCTTGGAAAAGCTAGTCAGAACAATCCAACTTTTCAGCAACAGGTCTTGGAACTCGGTGTACTCTCAAGGTTGATAATTATGGTAAAATCTGGTTCCATAGAAGAAGGCATTAAAGCATTGTACGCTGTTTCAGCTTTGACTCGGAATAATTTAGCCAGTCAGGAATTGTTCTATGCTGAAGCTGGAGGTTTGATGCTTCAGGATATTTTGAGGAATGCAAGTATTGATATCAAACTTCGGAGGAAGGCCGTGCTTCTATTGACTGATTTAGCAGATTATCAATTAGAAAACGTTGATAAAGATGAACCACCATTTTTCAATAACCAGGATCTGTTAAAGTCTGTGGTTGATTTAACTGCTTCAACCGACCTTGATCTCCAGGAAAAGGCACTTGTCGCGATTAAGAGTCTCTTGCAACTAAGGACCACTAAAGCTCGAGTTTTTAGGGACTTATGTGCTTTAGGTGATGCACTGAATAGAACGAAACAATTGTTGCATGATTTGATGGCGGATGAGGATCAGAGAGACTATGTAATGGATGTGGAAAATGTTCGTATTGAAGTGGAAAACATTTACCATAGAAAGCTGGAAAAGCAGTGA

Protein sequence

>MsG0380015934.01.T01

MERITLLLALILFTAAAVAETDNNLTSRQPLLSTAVDESDLLPPDAALSDSDGGFPSMDSMLHWAISHSDPEKLKESAQSHQQLSPTELQKRQLEIKEIMEKTRMLSDAELMKISIKDLNNASTSLEDRYRALLELLELVEPLDNANDLNKLGGLHAVTQELNHHDSGIRATAAWVLGKASQNNPTFQQQVLELGVLSRLIIMVKSGSIEEGIKALYAVSALTRNNLASQELFYAEAGGLMLQDILRNASIDIKLRRKAVLLLTDLADYQLENVDKDEPPFFNNQDLLKSVVDLTASTDLDLQEKALVAIKSLLQLRTTKARVFRDLCALGDALNRTKQLLHDLMADEDQRDYVMDVENVRIEVENIYHRKLEKQ*