AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480020487.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480020487.01.T01 MTR_4g052300 92.075 265 21 0 1 265 1 265 1.55e-180 497
MsG0480020487.01.T01 MTR_4g052320 89.850 266 26 1 1 265 1 266 9.02e-171 472
MsG0480020487.01.T01 MTR_4g052350 83.588 262 43 0 4 265 10 271 1.13e-165 459
MsG0480020487.01.T01 MTR_4g052340 81.609 261 48 0 5 265 11 271 3.64e-159 443
MsG0480020487.01.T01 MTR_7g105460 59.004 261 104 1 7 264 12 272 9.74e-102 298
MsG0480020487.01.T01 MTR_7g071680 50.903 277 109 5 4 256 25 298 1.94e-87 262
MsG0480020487.01.T01 MTR_7g107670 50.562 267 122 4 7 264 32 297 2.07e-81 247
MsG0480020487.01.T01 MTR_2g090165 49.805 257 124 3 4 256 2 257 2.10e-78 238
MsG0480020487.01.T01 MTR_7g083870 49.814 269 120 5 7 263 34 299 4.90e-78 238
MsG0480020487.01.T01 MTR_7g110130 49.042 261 127 3 4 260 2 260 5.01e-78 237
MsG0480020487.01.T01 MTR_7g110140 48.819 254 125 3 7 256 5 257 4.30e-76 232
MsG0480020487.01.T01 MTR_6g023590 45.349 258 136 3 3 255 8 265 7.84e-75 229
MsG0480020487.01.T01 MTR_7g105580 50.397 252 104 2 7 255 7 240 1.24e-74 228
MsG0480020487.01.T01 MTR_7g105590 60.656 183 72 0 7 189 7 189 4.32e-74 224
MsG0480020487.01.T01 MTR_3g020670 48.679 265 126 2 7 261 15 279 8.32e-73 224
MsG0480020487.01.T01 MTR_7g105570 48.462 260 80 2 8 264 21 229 2.77e-71 219
MsG0480020487.01.T01 MTR_6g023610 45.914 257 134 3 3 254 8 264 7.85e-71 219
MsG0480020487.01.T01 MTR_4g078630 46.388 263 123 4 7 256 18 275 1.07e-70 219
MsG0480020487.01.T01 MTR_7g110160 46.693 257 114 3 4 256 2 239 6.05e-70 216
MsG0480020487.01.T01 MTR_6g023950 46.275 255 132 3 3 252 8 262 1.12e-68 213
MsG0480020487.01.T01 MTR_6g023990 43.478 253 138 3 7 254 13 265 3.00e-68 212
MsG0480020487.01.T01 MTR_6g023910 45.882 255 129 5 4 251 9 261 8.15e-67 209
MsG0480020487.01.T01 MTR_6g035395 46.850 254 117 4 7 256 4 243 1.49e-66 207
MsG0480020487.01.T01 MTR_6g023600 44.186 258 139 3 3 255 8 265 2.99e-66 207
MsG0480020487.01.T01 MTR_6g023600 43.411 258 135 4 3 255 8 259 1.16e-61 195
MsG0480020487.01.T01 MTR_4g084800 64.122 131 47 0 7 137 12 142 5.38e-56 177
MsG0480020487.01.T01 MTR_3g113870 44.928 207 108 2 14 215 27 232 6.25e-52 169
MsG0480020487.01.T01 MTR_3g085740 30.924 249 164 5 7 251 74 318 8.26e-33 122
MsG0480020487.01.T01 MTR_4g058840 31.599 269 172 7 2 261 5 270 3.17e-30 114
MsG0480020487.01.T01 MTR_4g058820 31.599 269 172 7 2 261 5 270 3.17e-30 114
MsG0480020487.01.T01 MTR_1g082760 33.858 254 154 6 7 250 39 288 1.46e-28 110
MsG0480020487.01.T01 MTR_4g058810 30.483 269 175 7 2 261 5 270 8.23e-28 108
MsG0480020487.01.T01 MTR_1g051165 30.224 268 168 7 2 253 8 272 1.79e-27 107
MsG0480020487.01.T01 MTR_7g113650 30.196 255 162 7 7 250 39 288 1.19e-25 102
MsG0480020487.01.T01 MTR_4g131740 32.453 265 158 10 3 253 35 292 5.40e-24 98.2
MsG0480020487.01.T01 MTR_7g094510 29.070 258 160 9 8 251 6 254 7.10e-22 92.0
MsG0480020487.01.T01 MTR_1196s0010 29.183 257 146 7 11 251 277 513 9.70e-22 94.4
MsG0480020487.01.T01 MTR_3g068155 29.200 250 170 6 8 253 19 265 2.97e-21 90.5
MsG0480020487.01.T01 MTR_8g442750 30.370 270 160 8 8 259 14 273 3.91e-21 90.9
MsG0480020487.01.T01 MTR_8g096580 30.263 228 145 5 8 229 45 264 5.59e-21 90.5
MsG0480020487.01.T01 MTR_3g068070 30.153 262 174 8 1 258 8 264 8.11e-21 89.4
MsG0480020487.01.T01 MTR_4g086400 33.202 253 141 8 10 247 6 245 1.92e-20 90.9
MsG0480020487.01.T01 MTR_7g063390 29.020 255 168 7 8 253 16 266 2.53e-19 85.1
MsG0480020487.01.T01 MTR_3g068175 28.125 256 173 7 8 258 17 266 2.60e-19 85.1
MsG0480020487.01.T01 MTR_4g064887 28.016 257 164 8 8 253 15 261 6.73e-19 84.0
MsG0480020487.01.T01 MTR_4g086410 30.859 256 143 8 10 247 6 245 1.01e-18 85.9
MsG0480020487.01.T01 MTR_4g132850 26.613 248 174 6 7 251 6 248 1.56e-18 82.8
MsG0480020487.01.T01 MTR_4g097510 29.670 182 124 3 9 189 3 181 3.01e-18 82.4
MsG0480020487.01.T01 MTR_7g063330 27.668 253 171 7 8 252 15 263 8.96e-18 80.9
MsG0480020487.01.T01 MTR_3g068065 27.451 255 176 7 8 258 17 266 1.18e-17 80.9
MsG0480020487.01.T01 MTR_3g068085 30.000 260 163 12 8 258 15 264 2.75e-17 79.7
MsG0480020487.01.T01 MTR_3g068175 27.413 259 175 6 8 258 17 270 3.04e-17 79.7
MsG0480020487.01.T01 MTR_4g064883 28.996 269 174 9 1 258 1 263 4.07e-17 79.3
MsG0480020487.01.T01 MTR_7g063320 30.040 253 164 7 8 251 15 263 6.12e-17 78.6
MsG0480020487.01.T01 MTR_7g105560 65.455 55 19 0 7 61 12 66 1.87e-16 74.7
MsG0480020487.01.T01 MTR_7g094520 27.165 254 170 6 8 251 11 259 2.80e-16 76.6
MsG0480020487.01.T01 MTR_7g063270 27.778 252 172 6 8 252 16 264 6.99e-16 75.5
MsG0480020487.01.T01 MTR_7g063360 27.843 255 171 7 8 253 16 266 1.84e-15 74.3
MsG0480020487.01.T01 MTR_3g087850 30.556 180 117 4 12 189 30 203 9.74e-15 72.8
MsG0480020487.01.T01 MTR_4g064887 30.500 200 118 8 8 196 15 204 1.61e-14 71.2
MsG0480020487.01.T01 MTR_8g096620 28.962 183 124 4 10 189 47 226 4.91e-14 71.2
MsG0480020487.01.T01 MTR_7g063260 26.482 253 175 6 8 252 16 265 5.64e-14 70.5
MsG0480020487.01.T01 MTR_3g087860 30.120 166 109 3 25 189 29 188 7.80e-14 70.1
MsG0480020487.01.T01 MTR_8g044240 27.897 233 153 4 3 229 64 287 5.49e-13 68.2
MsG0480020487.01.T01 MTR_4g064883 29.897 194 129 5 8 197 14 204 3.09e-12 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480020487.01.T01 AT3G51680 52.381 273 109 6 7 260 31 301 2.60e-88 265
MsG0480020487.01.T01 AT3G26760 46.360 261 128 3 3 252 31 290 3.93e-77 236
MsG0480020487.01.T01 AT2G47140 49.004 251 123 3 7 253 5 254 7.13e-77 234
MsG0480020487.01.T01 AT1G52340 49.071 269 122 3 7 261 17 284 1.31e-76 234
MsG0480020487.01.T01 AT3G26770 49.412 255 119 3 7 252 40 293 1.96e-76 234
MsG0480020487.01.T01 AT4G03140 52.756 254 111 3 7 252 77 329 1.27e-74 231
MsG0480020487.01.T01 AT3G29250 47.222 252 126 4 7 253 5 254 1.03e-72 223
MsG0480020487.01.T01 AT2G47130 48.016 252 123 4 7 253 5 253 2.08e-72 223
MsG0480020487.01.T01 AT3G29250 47.222 252 126 4 7 253 41 290 3.86e-72 223
MsG0480020487.01.T01 AT3G29250 47.012 251 126 4 8 253 44 292 2.89e-71 221
MsG0480020487.01.T01 AT2G47120 45.312 256 133 5 2 253 1 253 1.36e-69 215
MsG0480020487.01.T01 AT2G47120 46.215 251 128 5 7 253 5 252 6.18e-69 214
MsG0480020487.01.T01 AT3G29260 45.490 255 131 4 4 253 2 253 2.56e-68 212
MsG0480020487.01.T01 AT3G42960 44.906 265 129 6 1 252 1 261 1.13e-59 191
MsG0480020487.01.T01 AT3G55290 32.700 263 165 7 1 253 10 270 6.25e-33 121
MsG0480020487.01.T01 AT3G55290 32.700 263 165 7 1 253 11 271 7.03e-33 121
MsG0480020487.01.T01 AT1G63380 31.679 262 168 6 2 253 13 273 1.96e-31 118
MsG0480020487.01.T01 AT1G63380 31.679 262 168 6 2 253 11 271 2.02e-31 117
MsG0480020487.01.T01 AT1G63380 31.679 262 168 6 2 253 16 276 2.09e-31 118
MsG0480020487.01.T01 AT1G63380 31.679 262 168 6 2 253 9 269 2.11e-31 117
MsG0480020487.01.T01 AT1G62610 30.916 262 170 6 2 253 8 268 1.34e-30 115
MsG0480020487.01.T01 AT1G62610 30.916 262 170 6 2 253 9 269 1.45e-30 115
MsG0480020487.01.T01 AT1G62610 30.916 262 170 6 2 253 7 267 1.60e-30 115
MsG0480020487.01.T01 AT1G62610 30.916 262 170 6 2 253 13 273 1.67e-30 115
MsG0480020487.01.T01 AT2G17845 31.783 258 163 6 8 253 47 303 3.78e-30 115
MsG0480020487.01.T01 AT3G46170 31.298 262 168 7 2 253 20 279 6.49e-30 114
MsG0480020487.01.T01 AT3G55310 32.061 262 166 7 2 253 11 270 6.58e-30 114
MsG0480020487.01.T01 AT1G24360 29.688 256 162 6 7 253 73 319 7.12e-29 112
MsG0480020487.01.T01 AT3G05260 29.961 257 165 6 7 253 36 287 3.25e-25 101
MsG0480020487.01.T01 AT1G54870 31.890 254 159 7 7 250 81 330 4.36e-25 102
MsG0480020487.01.T01 AT1G54870 31.890 254 159 7 7 250 83 332 4.44e-25 102
MsG0480020487.01.T01 AT2G30670 30.000 260 175 4 8 264 7 262 2.20e-24 99.0
MsG0480020487.01.T01 AT2G29310 31.034 261 171 6 8 264 7 262 4.44e-24 97.8
MsG0480020487.01.T01 AT2G29340 29.528 254 172 4 8 258 7 256 7.53e-24 97.4
MsG0480020487.01.T01 AT2G47150 31.579 247 117 7 8 253 1 196 9.42e-24 95.5
MsG0480020487.01.T01 AT2G29340 29.528 254 172 4 8 258 7 256 1.84e-23 97.4
MsG0480020487.01.T01 AT1G07450 29.921 254 170 5 8 258 8 256 2.67e-23 95.9
MsG0480020487.01.T01 AT5G06060 29.804 255 170 6 8 258 9 258 4.12e-23 95.5
MsG0480020487.01.T01 AT5G18210 29.545 264 168 6 1 251 1 259 7.09e-23 94.7
MsG0480020487.01.T01 AT2G29330 28.906 256 171 6 8 258 7 256 3.10e-22 93.2
MsG0480020487.01.T01 AT2G29300 31.746 252 162 7 8 253 7 254 4.14e-22 92.8
MsG0480020487.01.T01 AT1G07440 28.185 259 178 5 8 263 12 265 1.12e-21 91.7
MsG0480020487.01.T01 AT2G29300 31.474 251 162 7 8 252 7 253 1.89e-21 91.3
MsG0480020487.01.T01 AT2G29370 27.799 259 170 6 8 258 16 265 2.89e-21 90.5
MsG0480020487.01.T01 AT2G29290 27.559 254 177 4 8 258 7 256 5.79e-21 89.7
MsG0480020487.01.T01 AT5G50690 33.520 179 108 5 7 179 44 217 9.23e-21 89.0
MsG0480020487.01.T01 AT5G50590 33.520 179 108 5 7 179 44 217 9.23e-21 89.0
MsG0480020487.01.T01 AT5G10050 31.148 183 118 4 9 189 6 182 2.64e-20 88.2
MsG0480020487.01.T01 AT4G13180 30.116 259 160 8 8 253 13 263 3.11e-20 87.8
MsG0480020487.01.T01 AT2G29260 29.020 255 172 6 8 258 68 317 3.41e-20 88.6
MsG0480020487.01.T01 AT5G50690 33.520 179 108 5 7 179 44 217 4.41e-20 87.8
MsG0480020487.01.T01 AT5G50590 33.520 179 108 5 7 179 44 217 4.41e-20 87.8
MsG0480020487.01.T01 AT2G29350 28.958 259 176 5 3 258 10 263 6.51e-20 87.0
MsG0480020487.01.T01 AT2G29150 29.921 254 170 6 8 258 16 264 7.31e-20 86.7
MsG0480020487.01.T01 AT1G10310 32.474 194 126 4 10 201 17 207 1.42e-19 85.5
MsG0480020487.01.T01 AT5G18210 28.938 273 171 7 1 260 1 263 2.89e-19 85.1
MsG0480020487.01.T01 AT2G29340 31.771 192 126 3 8 196 7 196 3.78e-19 83.6
MsG0480020487.01.T01 AT2G29340 31.771 192 126 3 8 196 7 196 3.78e-19 83.6
MsG0480020487.01.T01 AT2G29360 27.863 262 166 7 8 258 16 265 6.90e-19 84.0
MsG0480020487.01.T01 AT4G05530 29.921 254 158 9 7 251 8 250 1.68e-18 82.8
MsG0480020487.01.T01 AT3G47350 29.612 206 129 6 5 202 41 238 1.70e-18 84.0
MsG0480020487.01.T01 AT3G47350 29.612 206 129 6 5 202 41 238 1.92e-18 83.6
MsG0480020487.01.T01 AT2G29320 28.996 269 169 6 1 258 6 263 1.95e-18 82.8
MsG0480020487.01.T01 AT5G50770 33.171 205 130 6 10 210 47 248 2.74e-18 83.6
MsG0480020487.01.T01 AT5G65205 32.973 185 112 6 9 189 7 183 3.37e-18 82.4
MsG0480020487.01.T01 AT1G49670 31.687 243 142 7 10 238 6 238 8.12e-18 83.2
MsG0480020487.01.T01 AT1G49670 31.687 243 142 7 10 238 6 238 9.22e-18 83.2
MsG0480020487.01.T01 AT2G29310 32.292 192 125 3 8 196 7 196 2.84e-17 78.2
MsG0480020487.01.T01 AT3G12800 30.075 266 155 9 8 253 10 264 4.65e-17 79.3
MsG0480020487.01.T01 AT2G29310 30.208 192 129 4 64 253 63 251 9.77e-17 78.2
MsG0480020487.01.T01 AT5G50600 27.391 230 150 7 8 229 45 265 1.71e-16 78.6
MsG0480020487.01.T01 AT5G50700 27.391 230 150 7 8 229 45 265 1.71e-16 78.6
MsG0480020487.01.T01 AT3G47360 29.703 202 126 6 5 198 42 235 2.61e-16 77.4
MsG0480020487.01.T01 AT2G29350 30.457 197 132 3 3 196 10 204 1.86e-15 73.9
MsG0480020487.01.T01 AT3G04000 27.519 258 170 6 8 250 14 269 3.02e-15 73.9
MsG0480020487.01.T01 AT2G29290 27.041 196 138 3 64 258 48 239 4.14e-15 73.2
MsG0480020487.01.T01 AT5G04900 31.361 169 111 2 14 177 83 251 3.42e-14 72.0
MsG0480020487.01.T01 AT2G29350 29.082 196 133 4 64 258 35 225 4.08e-14 70.1
MsG0480020487.01.T01 AT3G03980 26.515 264 166 7 8 251 14 269 8.05e-14 70.1
MsG0480020487.01.T01 AT2G29320 31.658 199 128 5 1 194 6 201 1.33e-13 68.6

Find 71 sgRNAs with CRISPR-Local

Find 72 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCTTGGGCCATTTGGTATT+CGG 0.232114 4:-42331135 MsG0480020487.01.T01:CDS
GCAGCTTCAGCCACATCTTT+TGG 0.275458 4:+42330998 None:intergenic
AACTTGACTGGCGTCTTTCT+TGG 0.291159 4:-42331310 MsG0480020487.01.T01:CDS
ACAAATTTCTTTAAGCTTGA+TGG 0.305258 4:-42331070 MsG0480020487.01.T01:CDS
TTTAATCACATCTTCAAATT+CGG 0.341039 4:+42331336 None:intergenic
GATGTTTATTCTAACCTAAA+AGG 0.341199 4:-42331034 MsG0480020487.01.T01:CDS
GCTTGGGCCATTTGGTATTC+GGG 0.360522 4:-42331134 MsG0480020487.01.T01:CDS
GCCATCGAGCTTGGGCCATT+TGG 0.371069 4:-42331142 MsG0480020487.01.T01:CDS
GATATCTAGTTTACCGTACT+TGG 0.373680 4:+42331420 None:intergenic
TTCTTTAAGCTTGATGGTGG+TGG 0.385481 4:-42331064 MsG0480020487.01.T01:CDS
CTTGGAAACGGTTGTGTTCA+CGG 0.391770 4:+42331438 None:intergenic
TCTTTAAGCTTGATGGTGGT+GGG 0.398255 4:-42331063 MsG0480020487.01.T01:CDS
GGCTGAAGCTGCTCTGTACT+TGG 0.402325 4:-42330987 MsG0480020487.01.T01:CDS
GGTCATAATCTTGTCATAGA+TGG 0.407106 4:-42330938 MsG0480020487.01.T01:CDS
TAGAGTGTCCTTTGTCGTCT+TGG 0.425344 4:+42331536 None:intergenic
ACCGGTGGTGCGAGCGGCAT+CGG 0.434462 4:-42331616 MsG0480020487.01.T01:CDS
TTAAAGAAATTTGTAACCAT+TGG 0.434965 4:+42331079 None:intergenic
ATTAACACGGCTAGTGTTTG+TGG 0.440870 4:-42331238 MsG0480020487.01.T01:CDS
GATGAGTCTAAGTATGTTAG+TGG 0.446032 4:-42330959 MsG0480020487.01.T01:CDS
GGGAAGGTGGCTCTGATCAC+CGG 0.449053 4:-42331634 MsG0480020487.01.T01:CDS
AGTTCAAAGCACGCCGTTGT+TGG 0.452888 4:-42331181 MsG0480020487.01.T01:CDS
AGAAACACGGCCATCGAGCT+TGG 0.453101 4:-42331151 MsG0480020487.01.T01:CDS
GTTCAAAGCACGCCGTTGTT+GGG 0.459124 4:-42331180 MsG0480020487.01.T01:CDS
GAAACACGGCCATCGAGCTT+GGG 0.462576 4:-42331150 MsG0480020487.01.T01:CDS
AACACAACCGTTTCCAAGTA+CGG 0.463216 4:-42331433 MsG0480020487.01.T01:CDS
GGTTATGATCCCCGCTCGAC+GGG 0.465924 4:-42331269 MsG0480020487.01.T01:CDS
AACGACTTGAGCTCCTTGCT+TGG 0.474776 4:+42331570 None:intergenic
ATTTACAAGGCTTGAGGGGA+AGG 0.480148 4:-42331650 MsG0480020487.01.T01:CDS
TCATGCTGAATTCATTTACA+AGG 0.485744 4:-42331663 MsG0480020487.01.T01:CDS
AATTCATTTACAAGGCTTGA+GGG 0.492849 4:-42331655 MsG0480020487.01.T01:CDS
ACCGATGCCGCTCGCACCAC+CGG 0.493419 4:+42331615 None:intergenic
ATTATGCTACCCCGTCGAGC+GGG 0.496710 4:+42331259 None:intergenic
ATTGGAGTCGCAAGAACATA+AGG 0.499291 4:+42331097 None:intergenic
AGTGTTTGTGGAAGCATTGG+TGG 0.502765 4:-42331226 MsG0480020487.01.T01:CDS
TAGTTTACCGTACTTGGAAA+CGG 0.505519 4:+42331426 None:intergenic
GGGTTATGATCCCCGCTCGA+CGG 0.522021 4:-42331270 MsG0480020487.01.T01:CDS
CAATTCACCCGAATACCAAA+TGG 0.524070 4:+42331127 None:intergenic
GTGATTAAAGTAAACTTGAC+TGG 0.532400 4:-42331322 MsG0480020487.01.T01:CDS
TTGGAACAAAGCATGCATCA+AGG 0.537428 4:-42331291 MsG0480020487.01.T01:CDS
GAATTCATTTACAAGGCTTG+AGG 0.537823 4:-42331656 MsG0480020487.01.T01:CDS
TTATGTTCTTGCGACTCCAA+TGG 0.545527 4:-42331095 MsG0480020487.01.T01:CDS
CTTTAAGCTTGATGGTGGTG+GGG 0.546290 4:-42331062 MsG0480020487.01.T01:CDS
GCTGAAGCTGCTCTGTACTT+GGG 0.550906 4:-42330986 MsG0480020487.01.T01:CDS
GGATTCAGCGTTGGAAACAA+TGG 0.558181 4:-42330914 MsG0480020487.01.T01:CDS
TGGAACAAAGCATGCATCAA+GGG 0.564084 4:-42331290 MsG0480020487.01.T01:CDS
CTGATCACCGGTGGTGCGAG+CGG 0.567749 4:-42331622 MsG0480020487.01.T01:CDS
TGTCACGTCACAGCGAACAT+AGG 0.574891 4:+42331483 None:intergenic
AATTTCTTTAAGCTTGATGG+TGG 0.575513 4:-42331067 MsG0480020487.01.T01:CDS
GCAAGACTCTTCTCCAAGCA+AGG 0.577004 4:-42331583 MsG0480020487.01.T01:CDS
ACCAAATGGCCCAAGCTCGA+TGG 0.578224 4:+42331141 None:intergenic
CTTGGAGAAGAGTCTTGCAG+TGG 0.582876 4:+42331588 None:intergenic
TACAAGGCTTGAGGGGAAGG+TGG 0.585321 4:-42331647 MsG0480020487.01.T01:CDS
GATATCATGTTTAACAACGC+TGG 0.588151 4:-42331403 MsG0480020487.01.T01:CDS
CATAATCTTGTCATAGATGG+AGG 0.590591 4:-42330935 MsG0480020487.01.T01:CDS
GCTAGTGTTTGTGGAAGCAT+TGG 0.592012 4:-42331229 MsG0480020487.01.T01:CDS
TTATGCTACCCCGTCGAGCG+GGG 0.597671 4:+42331260 None:intergenic
ATAGATGGAGGATTCAGCGT+TGG 0.602250 4:-42330923 MsG0480020487.01.T01:CDS
TTTAACAACGCTGGCATAAG+CGG 0.605608 4:-42331394 MsG0480020487.01.T01:CDS
TGTTCGCTGTGACGTGACAA+AGG 0.613627 4:-42331479 MsG0480020487.01.T01:CDS
TTTGAACTTGTGTAGGCATG+TGG 0.618438 4:+42331196 None:intergenic
GGCGTGCTTTGAACTTGTGT+AGG 0.622128 4:+42331189 None:intergenic
ACAGCGAACATAGGAAGAAG+AGG 0.628803 4:+42331492 None:intergenic
TGGTGCGAGCGGCATCGGTG+AGG 0.642225 4:-42331611 MsG0480020487.01.T01:CDS
ATTCATTTACAAGGCTTGAG+GGG 0.651199 4:-42331654 MsG0480020487.01.T01:CDS
AAGGTGGCTCTGATCACCGG+TGG 0.652302 4:-42331631 MsG0480020487.01.T01:CDS
GTTTCTCATCAGCCCAACAA+CGG 0.652719 4:+42331168 None:intergenic
GCTGACATCCAAGACGACAA+AGG 0.668183 4:-42331544 MsG0480020487.01.T01:CDS
GTTATGATCCCCGCTCGACG+GGG 0.674081 4:-42331268 MsG0480020487.01.T01:CDS
AATTATGCTACCCCGTCGAG+CGG 0.674229 4:+42331258 None:intergenic
TGTTGGGCTGATGAGAAACA+CGG 0.693612 4:-42331164 MsG0480020487.01.T01:CDS
ACGGGGTAGCATAATTAACA+CGG 0.731747 4:-42331251 MsG0480020487.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAAGAAATTTGTAACCAT+TGG + Chr4:42331471-42331490 None:intergenic 20.0%
!! TTTAATCACATCTTCAAATT+CGG + Chr4:42331214-42331233 None:intergenic 20.0%
! ACAAATTTCTTTAAGCTTGA+TGG - Chr4:42331477-42331496 MsG0480020487.01.T01:CDS 25.0%
! GATGTTTATTCTAACCTAAA+AGG - Chr4:42331513-42331532 MsG0480020487.01.T01:CDS 25.0%
!! TAATTTTATGCCAAAAGATG+TGG - Chr4:42331539-42331558 MsG0480020487.01.T01:CDS 25.0%
AATTCATTTACAAGGCTTGA+GGG - Chr4:42330892-42330911 MsG0480020487.01.T01:CDS 30.0%
AATTTCTTTAAGCTTGATGG+TGG - Chr4:42331480-42331499 MsG0480020487.01.T01:CDS 30.0%
GTGATTAAAGTAAACTTGAC+TGG - Chr4:42331225-42331244 MsG0480020487.01.T01:CDS 30.0%
! GCATAAAATTAGCACCTTTT+AGG + Chr4:42331530-42331549 None:intergenic 30.0%
ATTCATTTACAAGGCTTGAG+GGG - Chr4:42330893-42330912 MsG0480020487.01.T01:CDS 35.0%
CATAATCTTGTCATAGATGG+AGG - Chr4:42331612-42331631 MsG0480020487.01.T01:CDS 35.0%
GAATTCATTTACAAGGCTTG+AGG - Chr4:42330891-42330910 MsG0480020487.01.T01:CDS 35.0%
GATATCATGTTTAACAACGC+TGG - Chr4:42331144-42331163 MsG0480020487.01.T01:CDS 35.0%
GATGAGTCTAAGTATGTTAG+TGG - Chr4:42331588-42331607 MsG0480020487.01.T01:CDS 35.0%
GGTCATAATCTTGTCATAGA+TGG - Chr4:42331609-42331628 MsG0480020487.01.T01:CDS 35.0%
TAGTTTACCGTACTTGGAAA+CGG + Chr4:42331124-42331143 None:intergenic 35.0%
! GATATCTAGTTTACCGTACT+TGG + Chr4:42331130-42331149 None:intergenic 35.0%
AACACAACCGTTTCCAAGTA+CGG - Chr4:42331114-42331133 MsG0480020487.01.T01:CDS 40.0%
ACGGGGTAGCATAATTAACA+CGG - Chr4:42331296-42331315 MsG0480020487.01.T01:CDS 40.0%
ATTAACACGGCTAGTGTTTG+TGG - Chr4:42331309-42331328 MsG0480020487.01.T01:CDS 40.0%
ATTGGAGTCGCAAGAACATA+AGG + Chr4:42331453-42331472 None:intergenic 40.0%
CAATTCACCCGAATACCAAA+TGG + Chr4:42331423-42331442 None:intergenic 40.0%
TGGAACAAAGCATGCATCAA+GGG - Chr4:42331257-42331276 MsG0480020487.01.T01:CDS 40.0%
TTATGTTCTTGCGACTCCAA+TGG - Chr4:42331452-42331471 MsG0480020487.01.T01:CDS 40.0%
TTGGAACAAAGCATGCATCA+AGG - Chr4:42331256-42331275 MsG0480020487.01.T01:CDS 40.0%
TTTAACAACGCTGGCATAAG+CGG - Chr4:42331153-42331172 MsG0480020487.01.T01:CDS 40.0%
TTTGAACTTGTGTAGGCATG+TGG + Chr4:42331354-42331373 None:intergenic 40.0%
!! TCTTTAAGCTTGATGGTGGT+GGG - Chr4:42331484-42331503 MsG0480020487.01.T01:CDS 40.0%
!! TTCTTTAAGCTTGATGGTGG+TGG - Chr4:42331483-42331502 MsG0480020487.01.T01:CDS 40.0%
AACTTGACTGGCGTCTTTCT+TGG - Chr4:42331237-42331256 MsG0480020487.01.T01:CDS 45.0%
ACAGCGAACATAGGAAGAAG+AGG + Chr4:42331058-42331077 None:intergenic 45.0%
AGCTTGGGCCATTTGGTATT+CGG - Chr4:42331412-42331431 MsG0480020487.01.T01:CDS 45.0%
ATAGATGGAGGATTCAGCGT+TGG - Chr4:42331624-42331643 MsG0480020487.01.T01:CDS 45.0%
ATTTACAAGGCTTGAGGGGA+AGG - Chr4:42330897-42330916 MsG0480020487.01.T01:CDS 45.0%
CTTGGAAACGGTTGTGTTCA+CGG + Chr4:42331112-42331131 None:intergenic 45.0%
GTTTCTCATCAGCCCAACAA+CGG + Chr4:42331382-42331401 None:intergenic 45.0%
TGTTGGGCTGATGAGAAACA+CGG - Chr4:42331383-42331402 MsG0480020487.01.T01:CDS 45.0%
! GCTAGTGTTTGTGGAAGCAT+TGG - Chr4:42331318-42331337 MsG0480020487.01.T01:CDS 45.0%
! GGATTCAGCGTTGGAAACAA+TGG - Chr4:42331633-42331652 MsG0480020487.01.T01:CDS 45.0%
! TAGAGTGTCCTTTGTCGTCT+TGG + Chr4:42331014-42331033 None:intergenic 45.0%
!! AGTGTTTGTGGAAGCATTGG+TGG - Chr4:42331321-42331340 MsG0480020487.01.T01:CDS 45.0%
!! CTTTAAGCTTGATGGTGGTG+GGG - Chr4:42331485-42331504 MsG0480020487.01.T01:CDS 45.0%
AACGACTTGAGCTCCTTGCT+TGG + Chr4:42330980-42330999 None:intergenic 50.0%
AATTATGCTACCCCGTCGAG+CGG + Chr4:42331292-42331311 None:intergenic 50.0%
AGTTCAAAGCACGCCGTTGT+TGG - Chr4:42331366-42331385 MsG0480020487.01.T01:CDS 50.0%
CTTGGAGAAGAGTCTTGCAG+TGG + Chr4:42330962-42330981 None:intergenic 50.0%
GCAAGACTCTTCTCCAAGCA+AGG - Chr4:42330964-42330983 MsG0480020487.01.T01:CDS 50.0%
GCTGAAGCTGCTCTGTACTT+GGG - Chr4:42331561-42331580 MsG0480020487.01.T01:CDS 50.0%
GCTGACATCCAAGACGACAA+AGG - Chr4:42331003-42331022 MsG0480020487.01.T01:CDS 50.0%
GCTTGGGCCATTTGGTATTC+GGG - Chr4:42331413-42331432 MsG0480020487.01.T01:CDS 50.0%
GTTCAAAGCACGCCGTTGTT+GGG - Chr4:42331367-42331386 MsG0480020487.01.T01:CDS 50.0%
TGTCACGTCACAGCGAACAT+AGG + Chr4:42331067-42331086 None:intergenic 50.0%
TGTTCGCTGTGACGTGACAA+AGG - Chr4:42331068-42331087 MsG0480020487.01.T01:CDS 50.0%
! GCAGCTTCAGCCACATCTTT+TGG + Chr4:42331552-42331571 None:intergenic 50.0%
! GGCGTGCTTTGAACTTGTGT+AGG + Chr4:42331361-42331380 None:intergenic 50.0%
ACCAAATGGCCCAAGCTCGA+TGG + Chr4:42331409-42331428 None:intergenic 55.0%
AGAAACACGGCCATCGAGCT+TGG - Chr4:42331396-42331415 MsG0480020487.01.T01:CDS 55.0%
ATTATGCTACCCCGTCGAGC+GGG + Chr4:42331291-42331310 None:intergenic 55.0%
GAAACACGGCCATCGAGCTT+GGG - Chr4:42331397-42331416 MsG0480020487.01.T01:CDS 55.0%
GGCTGAAGCTGCTCTGTACT+TGG - Chr4:42331560-42331579 MsG0480020487.01.T01:CDS 55.0%
TACAAGGCTTGAGGGGAAGG+TGG - Chr4:42330900-42330919 MsG0480020487.01.T01:CDS 55.0%
GCCATCGAGCTTGGGCCATT+TGG - Chr4:42331405-42331424 MsG0480020487.01.T01:CDS 60.0%
GGGTTATGATCCCCGCTCGA+CGG - Chr4:42331277-42331296 MsG0480020487.01.T01:CDS 60.0%
GGTTATGATCCCCGCTCGAC+GGG - Chr4:42331278-42331297 MsG0480020487.01.T01:CDS 60.0%
GTTATGATCCCCGCTCGACG+GGG - Chr4:42331279-42331298 MsG0480020487.01.T01:CDS 60.0%
TTATGCTACCCCGTCGAGCG+GGG + Chr4:42331290-42331309 None:intergenic 60.0%
!! AAGGTGGCTCTGATCACCGG+TGG - Chr4:42330916-42330935 MsG0480020487.01.T01:CDS 60.0%
!! GGGAAGGTGGCTCTGATCAC+CGG - Chr4:42330913-42330932 MsG0480020487.01.T01:CDS 60.0%
CTGATCACCGGTGGTGCGAG+CGG - Chr4:42330925-42330944 MsG0480020487.01.T01:CDS 65.0%
ACCGATGCCGCTCGCACCAC+CGG + Chr4:42330935-42330954 None:intergenic 70.0%
ACCGGTGGTGCGAGCGGCAT+CGG - Chr4:42330931-42330950 MsG0480020487.01.T01:CDS 70.0%
!! TGGTGCGAGCGGCATCGGTG+AGG - Chr4:42330936-42330955 MsG0480020487.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr4 gene 42330886 42331683 42330886 ID=MsG0480020487.01;Name=MsG0480020487.01
Chr4 mRNA 42330886 42331683 42330886 ID=MsG0480020487.01.T01;Parent=MsG0480020487.01;Name=MsG0480020487.01.T01;_AED=0.38;_eAED=0.38;_QI=0|-1|0|1|-1|1|1|0|265
Chr4 exon 42330886 42331683 42330886 ID=MsG0480020487.01.T01:exon:18793;Parent=MsG0480020487.01.T01
Chr4 CDS 42330886 42331683 42330886 ID=MsG0480020487.01.T01:cds;Parent=MsG0480020487.01.T01
Gene Sequence

>MsG0480020487.01.T01

ATGCTGAATTCATTTACAAGGCTTGAGGGGAAGGTGGCTCTGATCACCGGTGGTGCGAGCGGCATCGGTGAGGCCACTGCAAGACTCTTCTCCAAGCAAGGAGCTCAAGTCGTTATAGCTGACATCCAAGACGACAAAGGACACTCTATTTGCAACGAACTACACAAATCCTCTTCTTCCTATGTTCGCTGTGACGTGACAAAGGAAGAAGACATTGAAAATGCCGTGAACACAACCGTTTCCAAGTACGGTAAACTAGATATCATGTTTAACAACGCTGGCATAAGCGGTGTAAACAAAACAAAGATACTTGAAAACAAGTTATCCGAATTTGAAGATGTGATTAAAGTAAACTTGACTGGCGTCTTTCTTGGAACAAAGCATGCATCAAGGGTTATGATCCCCGCTCGACGGGGTAGCATAATTAACACGGCTAGTGTTTGTGGAAGCATTGGTGGCTGCGCTCCACATGCCTACACAAGTTCAAAGCACGCCGTTGTTGGGCTGATGAGAAACACGGCCATCGAGCTTGGGCCATTTGGTATTCGGGTGAATTGTGTGTCACCTTATGTTCTTGCGACTCCAATGGTTACAAATTTCTTTAAGCTTGATGGTGGTGGGGTTGTAGATGTTTATTCTAACCTAAAAGGTGCTAATTTTATGCCAAAAGATGTGGCTGAAGCTGCTCTGTACTTGGGAAGTGATGAGTCTAAGTATGTTAGTGGTCATAATCTTGTCATAGATGGAGGATTCAGCGTTGGAAACAATGGATTTTGTGTGTTTGATCAATCTCTCTGA

Protein sequence

>MsG0480020487.01.T01

MLNSFTRLEGKVALITGGASGIGEATARLFSKQGAQVVIADIQDDKGHSICNELHKSSSSYVRCDVTKEEDIENAVNTTVSKYGKLDIMFNNAGISGVNKTKILENKLSEFEDVIKVNLTGVFLGTKHASRVMIPARRGSIINTASVCGSIGGCAPHAYTSSKHAVVGLMRNTAIELGPFGIRVNCVSPYVLATPMVTNFFKLDGGGVVDVYSNLKGANFMPKDVAEAALYLGSDESKYVSGHNLVIDGGFSVGNNGFCVFDQSL*