AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380016732.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016732.01.T01 MTR_3g094220 100.000 129 0 0 4 132 2 130 1.13e-91 261
MsG0380016732.01.T01 MTR_5g097200 94.574 129 7 0 4 132 2 130 3.31e-86 247
MsG0380016732.01.T01 MTR_3g094220 99.048 105 1 0 3 107 1 105 3.28e-73 214
MsG0380016732.01.T01 MTR_5g097200 98.095 105 2 0 3 107 1 105 1.81e-72 213
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016732.01.T01 AT2G40590 82.759 116 20 0 3 118 1 116 2.64e-67 199
MsG0380016732.01.T01 AT2G40510 82.759 116 20 0 3 118 1 116 4.41e-67 199
MsG0380016732.01.T01 AT3G56340 83.478 115 19 0 4 118 2 116 4.88e-67 199

Find 56 sgRNAs with CRISPR-Local

Find 197 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGGGCAATACCTACATTT+TGG 0.167994 3:-87181428 MsG0380016732.01.T01:three_prime_UTR
TTGACCGGGCTGGCCGGGCC+TGG 0.190447 3:+87181631 None:intergenic
CAATAGTGTCTTTGTTTAAC+TGG 0.250900 3:-87180595 MsG0380016732.01.T01:three_prime_UTR
TGACCGGGCTGGCCGGGCCT+GGG 0.257962 3:+87181632 None:intergenic
TTGTTTAACTGGTGAAAATA+AGG 0.261768 3:-87180584 MsG0380016732.01.T01:three_prime_UTR
AGCAGGGCGTGGGGCTTGAC+CGG 0.292902 3:+87181616 None:intergenic
TGGGGCTTGACCGGGCTGGC+CGG 0.319724 3:+87181625 None:intergenic
AGCTGCAGTTAGGGATGTTC+AGG 0.334420 3:-87183168 MsG0380016732.01.T01:CDS
ATAATGTTGCTACACAAAAC+TGG 0.351065 3:+87181478 None:intergenic
GGGGCTTGACCGGGCTGGCC+GGG 0.376921 3:+87181626 None:intergenic
GCTCCTGGTCCAGCAGGGCG+TGG 0.386043 3:+87181605 None:intergenic
GGTCAAGCCCCACGCCCTGC+TGG 0.391542 3:-87181614 MsG0380016732.01.T01:CDS
CTCCTGGTCCAGCAGGGCGT+GGG 0.393652 3:+87181606 None:intergenic
GGAGGAGCTCCTGGTCCAGC+AGG 0.410657 3:+87181599 None:intergenic
GCACGGGCTGGAGGAGCTCC+TGG 0.413579 3:+87181590 None:intergenic
CAGACGTTCAAGCGTAGAAA+TGG 0.419772 3:-87183400 MsG0380016732.01.T01:CDS
TTGTTGAACAAGCTGCAGTT+AGG 0.422831 3:-87183178 MsG0380016732.01.T01:CDS
GCATCTTCACATAGAGCTTA+GGG 0.429592 3:+87183021 None:intergenic
GCACCCAGGCCCGGCCAGCC+CGG 0.443884 3:-87181635 MsG0380016732.01.T01:CDS
TGCATCTTCACATAGAGCTT+AGG 0.448152 3:+87183020 None:intergenic
GCCCCACGCCCTGCTGGACC+AGG 0.451018 3:-87181608 MsG0380016732.01.T01:CDS
GCAGGGCGTGGGGCTTGACC+GGG 0.458801 3:+87181617 None:intergenic
GGCGTGGGGCTTGACCGGGC+TGG 0.467003 3:+87181621 None:intergenic
TGTTGAACAAGCTGCAGTTA+GGG 0.467003 3:-87183177 MsG0380016732.01.T01:CDS
AGCCTCCACAGCGTTTCATT+AGG 0.474568 3:-87182926 MsG0380016732.01.T01:CDS
AAGGATGACGCACCCAGGCC+CGG 0.480226 3:-87181644 MsG0380016732.01.T01:CDS
AAGACACTATTGCAAGAGCT+TGG 0.481575 3:+87180606 None:intergenic
AGCTTCATCTAGGCACGGGC+TGG 0.485726 3:+87181578 None:intergenic
AGACACTATTGCAAGAGCTT+GGG 0.485877 3:+87180607 None:intergenic
AAATCATATTAGCTTCATCT+AGG 0.491369 3:+87181568 None:intergenic
CTATCCACTCTCACGTTGTG+AGG 0.500174 3:-87182980 MsG0380016732.01.T01:CDS
TCAGCAATTATTAAATATCA+AGG 0.506991 3:+87181372 None:intergenic
CACAGCGTTTCATTAGGCGC+AGG 0.511553 3:-87182920 MsG0380016732.01.T01:CDS
TCCTGGTCCAGCAGGGCGTG+GGG 0.514682 3:+87181607 None:intergenic
AAGATTAAGCAAATCAAATG+AGG 0.515264 3:+87181506 None:intergenic
ATTAAAATGATCCAAAATGT+AGG 0.520900 3:+87181417 None:intergenic
GGGTCAGATCTCGCACTGAC+AGG 0.523518 3:-87182959 MsG0380016732.01.T01:CDS
GGTCGTAACAAGCATGGCCG+TGG 0.529078 3:-87183376 MsG0380016732.01.T01:CDS
TTCATCCGTTGCTCCAACTG+TGG 0.535536 3:-87183343 MsG0380016732.01.T01:CDS
TTCATCTAGGCACGGGCTGG+AGG 0.539272 3:+87181581 None:intergenic
CGCCTAATGAAACGCTGTGG+AGG 0.567724 3:+87182924 None:intergenic
TATTAGCTTCATCTAGGCAC+GGG 0.571744 3:+87181574 None:intergenic
CTGTGGAAAATGCTGTCCTA+AGG 0.573602 3:-87183326 MsG0380016732.01.T01:intron
ATATTAGCTTCATCTAGGCA+CGG 0.579130 3:+87181573 None:intergenic
ACGTTCAAGCGTAGAAATGG+AGG 0.581703 3:-87183397 MsG0380016732.01.T01:CDS
ATACATAGCATCAATGCGTA+AGG 0.591859 3:-87180639 MsG0380016732.01.T01:three_prime_UTR
GAGGAGCTCCTGGTCCAGCA+GGG 0.594077 3:+87181600 None:intergenic
ACAGCGTTTCATTAGGCGCA+GGG 0.598137 3:-87182919 MsG0380016732.01.T01:intron
TGACCCTCACAACGTGAGAG+TGG 0.612357 3:+87182976 None:intergenic
TATCCACTCTCACGTTGTGA+GGG 0.624539 3:-87182979 MsG0380016732.01.T01:CDS
GGATGAATTTGACATGGCCA+CGG 0.627886 3:+87183359 None:intergenic
AATGGAGGTCGTAACAAGCA+TGG 0.634174 3:-87183382 MsG0380016732.01.T01:CDS
TCAGATCTCGCACTGACAGG+AGG 0.634180 3:-87182956 MsG0380016732.01.T01:CDS
AGCAACGGATGAATTTGACA+TGG 0.665067 3:+87183353 None:intergenic
AACGTGAGAGTGGATAGCAC+AGG 0.683104 3:+87182986 None:intergenic
CTGCGCCTAATGAAACGCTG+TGG 0.693414 3:+87182921 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAACATTATTAGATTATTTT+TGG + Chr3:87181376-87181395 None:intergenic 10.0%
!!! ATTTTTTTGTTTTGTTAAAT+AGG - Chr3:87180737-87180756 MsG0380016732.01.T01:intron 10.0%
!! AAATGTAATATACTCATTTA+CGG + Chr3:87182804-87182823 None:intergenic 15.0%
!! AATTATGCTATATATTTCAT+TGG - Chr3:87182272-87182291 MsG0380016732.01.T01:intron 15.0%
!! ACAATTGTAAAATTTATAGA+TGG + Chr3:87183011-87183030 None:intergenic 15.0%
!! ATACAATTGTGATAAATTTA+GGG + Chr3:87181216-87181235 None:intergenic 15.0%
!! CAAAATATGAAATCTAAATT+GGG + Chr3:87182068-87182087 None:intergenic 15.0%
!! TCAAAATATGAAATCTAAAT+TGG + Chr3:87182069-87182088 None:intergenic 15.0%
!!! AAAAGCATGTTAATTTAATT+AGG - Chr3:87182741-87182760 MsG0380016732.01.T01:intron 15.0%
!!! GTTTATTTAATTCTTTTTGA+AGG - Chr3:87182308-87182327 MsG0380016732.01.T01:intron 15.0%
!!! TAGTGTTTTATTTTGTATTT+GGG - Chr3:87182909-87182928 MsG0380016732.01.T01:intron 15.0%
!!! TTAGTGTTTTATTTTGTATT+TGG - Chr3:87182908-87182927 MsG0380016732.01.T01:intron 15.0%
!!! TTTTTTTTTTTTTGTGTTGT+TGG - Chr3:87182423-87182442 MsG0380016732.01.T01:intron 15.0%
!! AAAAAAAGATGAAATACCTT+AGG + Chr3:87180664-87180683 None:intergenic 20.0%
!! AAAACCAACAAAAGTAAATA+AGG + Chr3:87181094-87181113 None:intergenic 20.0%
!! AAACCAACAAAAGTAAATAA+GGG + Chr3:87181093-87181112 None:intergenic 20.0%
!! AATGTAATATACTCATTTAC+GGG + Chr3:87182803-87182822 None:intergenic 20.0%
!! ACAATTGTATGTTTCTTTAT+TGG - Chr3:87181226-87181245 MsG0380016732.01.T01:intron 20.0%
!! ATATAAACCTAAAGCATATT+AGG + Chr3:87181491-87181510 None:intergenic 20.0%
!! ATTAAAATGATCCAAAATGT+AGG + Chr3:87182557-87182576 None:intergenic 20.0%
!! CATACAATTGTGATAAATTT+AGG + Chr3:87181217-87181236 None:intergenic 20.0%
!! TACAATTGTGATAAATTTAG+GGG + Chr3:87181215-87181234 None:intergenic 20.0%
!! TCAGCAATTATTAAATATCA+AGG + Chr3:87182602-87182621 None:intergenic 20.0%
!! TTGAAGGAAAAAAAAATAGT+TGG + Chr3:87182040-87182059 None:intergenic 20.0%
!!! ATTGTGGTATGAAAATTTTA+AGG + Chr3:87182875-87182894 None:intergenic 20.0%
!!! TTTATCTGTTTCTGTAAAAA+TGG - Chr3:87181394-87181413 MsG0380016732.01.T01:three_prime_UTR 20.0%
! AACAAAAGTAAATAAGGGAA+AGG + Chr3:87181088-87181107 None:intergenic 25.0%
! AAGATTAAGCAAATCAAATG+AGG + Chr3:87182468-87182487 None:intergenic 25.0%
! AAGGAAAAAAAAATAGTTGG+CGG + Chr3:87182037-87182056 None:intergenic 25.0%
! ACTCATTTATTAAACGAGTT+AGG + Chr3:87182704-87182723 None:intergenic 25.0%
! CATGTTAATTTAATTAGGTC+GGG - Chr3:87182746-87182765 MsG0380016732.01.T01:intron 25.0%
! GATAACTTGATTTAGACATT+TGG - Chr3:87181847-87181866 MsG0380016732.01.T01:intron 25.0%
! GCATGTTAATTTAATTAGGT+CGG - Chr3:87182745-87182764 MsG0380016732.01.T01:intron 25.0%
! TCTTTATTGGATTCGATATA+GGG - Chr3:87181239-87181258 MsG0380016732.01.T01:intron 25.0%
! TGAAATTTGTAACACAAACT+AGG - Chr3:87183128-87183147 MsG0380016732.01.T01:intron 25.0%
! TTCTTTAGCTATGAAATTGT+TGG - Chr3:87182210-87182229 MsG0380016732.01.T01:intron 25.0%
! TTCTTTATTGGATTCGATAT+AGG - Chr3:87181238-87181257 MsG0380016732.01.T01:intron 25.0%
! TTGTTTAACTGGTGAAAATA+AGG - Chr3:87183387-87183406 MsG0380016732.01.T01:CDS 25.0%
!! AAATCATATTAGCTTCATCT+AGG + Chr3:87182406-87182425 None:intergenic 25.0%
!! ATAAAACAAATGTGCTATTG+AGG + Chr3:87181905-87181924 None:intergenic 25.0%
!! ATATATCTTGTTACTTGAGT+GGG - Chr3:87182111-87182130 MsG0380016732.01.T01:intron 25.0%
!! TTTCTTTTCATGTTGTCTTT+AGG - Chr3:87181943-87181962 MsG0380016732.01.T01:intron 25.0%
!!! ATGCCTTAATTTTTTCAACT+AGG - Chr3:87183242-87183261 MsG0380016732.01.T01:intron 25.0%
!!! ATTTTGATTATCCTCTCTTT+TGG - Chr3:87182082-87182101 MsG0380016732.01.T01:intron 25.0%
!!! TCTAAATTGGGATATTTTGA+AGG + Chr3:87182056-87182075 None:intergenic 25.0%
!!! TTTCCCTTATTTACTTTTGT+TGG - Chr3:87181087-87181106 MsG0380016732.01.T01:intron 25.0%
AAAAAAAAATAGTTGGCGGT+TGG + Chr3:87182033-87182052 None:intergenic 30.0%
AAAAATTAAGGCATAAGCCT+TGG + Chr3:87183236-87183255 None:intergenic 30.0%
AAGTCATCCTAAATGATAAC+AGG + Chr3:87182000-87182019 None:intergenic 30.0%
AATAAGCTGTTTATCCAAAC+AGG - Chr3:87181546-87181565 MsG0380016732.01.T01:three_prime_UTR 30.0%
ACAATGATAATACCTCAGAT+TGG - Chr3:87181188-87181207 MsG0380016732.01.T01:intron 30.0%
AGCTTATAAAAAAGCCTATC+AGG - Chr3:87182773-87182792 MsG0380016732.01.T01:intron 30.0%
AGGCCTAGTTGAAAAAATTA+AGG + Chr3:87183248-87183267 None:intergenic 30.0%
ATAATGTTGCTACACAAAAC+TGG + Chr3:87182496-87182515 None:intergenic 30.0%
CTCTTGGTTTATATAACTAG+TGG - Chr3:87181569-87181588 MsG0380016732.01.T01:exon 30.0%
CTTAAAATAAAGCCTTTGAC+AGG - Chr3:87183203-87183222 MsG0380016732.01.T01:CDS 30.0%
TATATCTTCAACCAAAAGAG+AGG + Chr3:87182096-87182115 None:intergenic 30.0%
! ATTTGATGCTTTTGAATGAG+TGG - Chr3:87182575-87182594 MsG0380016732.01.T01:intron 30.0%
! CAATAGTGTCTTTGTTTAAC+TGG - Chr3:87183376-87183395 MsG0380016732.01.T01:CDS 30.0%
! CTGTTTTCCTAATATGCTTT+AGG - Chr3:87181481-87181500 MsG0380016732.01.T01:three_prime_UTR 30.0%
! GATATATCTTGTTACTTGAG+TGG - Chr3:87182110-87182129 MsG0380016732.01.T01:intron 30.0%
! GTTATCATTTAAGACTCGTA+TGG - Chr3:87182978-87182997 MsG0380016732.01.T01:CDS 30.0%
! TTTCATTGGTTGTGTCTAAT+TGG - Chr3:87182286-87182305 MsG0380016732.01.T01:intron 30.0%
!! AAAGAGCATCATTCACAAAT+TGG + Chr3:87181715-87181734 None:intergenic 30.0%
!! ACCTTTTTAAAAGACTAGCT+TGG + Chr3:87183174-87183193 None:intergenic 30.0%
!! CTTTGAAATCTAATGTTGAG+AGG - Chr3:87181159-87181178 MsG0380016732.01.T01:intron 30.0%
!!! CAAAGGCTTTATTTTAAGTC+TGG + Chr3:87183201-87183220 None:intergenic 30.0%
AAGCTTGTGAAAATTGCCAT+CGG + Chr3:87181329-87181348 None:intergenic 35.0%
ATACATAGCATCAATGCGTA+AGG - Chr3:87183332-87183351 MsG0380016732.01.T01:CDS 35.0%
ATATAAACCAAGAGCCTGTT+TGG + Chr3:87181563-87181582 None:intergenic 35.0%
ATTGAGGTAGCATTTGAGAA+AGG + Chr3:87181889-87181908 None:intergenic 35.0%
CTCTTGGTTTATATAACCAG+TGG - Chr3:87181655-87181674 MsG0380016732.01.T01:intron 35.0%
GAAAACATGAAAATAGCCGA+TGG - Chr3:87181310-87181329 MsG0380016732.01.T01:intron 35.0%
GCTTATTTGAGCTTATCAAC+TGG - Chr3:87181275-87181294 MsG0380016732.01.T01:intron 35.0%
GTGAATGCCTGTTATCATTT+AGG - Chr3:87181990-87182009 MsG0380016732.01.T01:intron 35.0%
TAAACAGAAATGGTCCATAG+TGG + Chr3:87181625-87181644 None:intergenic 35.0%
TAAAGCCTTTGACAGGTAAA+AGG - Chr3:87183210-87183229 MsG0380016732.01.T01:CDS 35.0%
TAATATACTCATTTACGGGC+CGG + Chr3:87182799-87182818 None:intergenic 35.0%
TATAAAAAAGCCTATCAGGC+CGG - Chr3:87182777-87182796 MsG0380016732.01.T01:intron 35.0%
TCATCACTACTTTATACCAC+TGG + Chr3:87181674-87181693 None:intergenic 35.0%
TCATCACTACTTTATGCTAC+TGG + Chr3:87181516-87181535 None:intergenic 35.0%
TCGTCACTACTTTATACTAC+TGG + Chr3:87181750-87181769 None:intergenic 35.0%
! AGGCTTTTAAACAGGCTAAT+AGG - Chr3:87183148-87183167 MsG0380016732.01.T01:intron 35.0%
! ATATTAGCTTCATCTAGGCA+CGG + Chr3:87182401-87182420 None:intergenic 35.0%
! CACAAACTAGGCTTTTAAAC+AGG - Chr3:87183140-87183159 MsG0380016732.01.T01:intron 35.0%
! GATGTTTTGCTTGTGTTCTT+GGG - Chr3:87182526-87182545 MsG0380016732.01.T01:intron 35.0%
! TGATGTTTTGCTTGTGTTCT+TGG - Chr3:87182525-87182544 MsG0380016732.01.T01:intron 35.0%
!!! GCCAAGCTAGTCTTTTAAAA+AGG - Chr3:87183170-87183189 MsG0380016732.01.T01:CDS 35.0%
!!! GCTAGTCTTTTAAAAAGGTC+AGG - Chr3:87183175-87183194 MsG0380016732.01.T01:CDS 35.0%
AAATTTAGGGGTCCAATCTG+AGG + Chr3:87181203-87181222 None:intergenic 40.0%
AAGACACTATTGCAAGAGCT+TGG + Chr3:87183368-87183387 None:intergenic 40.0%
AGAAATGGTCCATAGTGGTA+TGG + Chr3:87181620-87181639 None:intergenic 40.0%
AGACACTATTGCAAGAGCTT+GGG + Chr3:87183367-87183386 None:intergenic 40.0%
AGCAACGGATGAATTTGACA+TGG + Chr3:87180621-87180640 None:intergenic 40.0%
ATATAAACCAAGAGCCTGCT+TGG + Chr3:87181649-87181668 None:intergenic 40.0%
ATCACCTACTCTTGCACATA+GGG + Chr3:87183314-87183333 None:intergenic 40.0%
ATTGCTGAGTATGTGCAAGT+AGG - Chr3:87182614-87182633 MsG0380016732.01.T01:intron 40.0%
CATTCACAAATTGGTCACAG+TGG + Chr3:87181706-87181725 None:intergenic 40.0%
CCAATGTGTCCAATTTGTGA+AGG - Chr3:87181779-87181798 MsG0380016732.01.T01:intron 40.0%
CCATTTCTGTTTATCCAAGC+AGG - Chr3:87181632-87181651 MsG0380016732.01.T01:CDS 40.0%
CCTGCTTGGATAAACAGAAA+TGG + Chr3:87181635-87181654 None:intergenic 40.0%
CCTTCACAAATTGGACACAT+TGG + Chr3:87181782-87181801 None:intergenic 40.0%
GATATAGGGTCTGTTTGGAT+TGG - Chr3:87181253-87181272 MsG0380016732.01.T01:intron 40.0%
GATTCGATATAGGGTCTGTT+TGG - Chr3:87181248-87181267 MsG0380016732.01.T01:intron 40.0%
GCATCTTCACATAGAGCTTA+GGG + Chr3:87180953-87180972 None:intergenic 40.0%
GGTAGCATTTGAGAAAGGAT+AGG + Chr3:87181884-87181903 None:intergenic 40.0%
TAGCCTATTTAAGCAAAGCC+CGG - Chr3:87183267-87183286 MsG0380016732.01.T01:intron 40.0%
TATAGTGTGCCATACCACTA+TGG - Chr3:87181608-87181627 MsG0380016732.01.T01:CDS 40.0%
TATCACCTACTCTTGCACAT+AGG + Chr3:87183315-87183334 None:intergenic 40.0%
TGCATCTTCACATAGAGCTT+AGG + Chr3:87180954-87180973 None:intergenic 40.0%
TGTGTCCAATTTGTGAAGGA+TGG - Chr3:87181783-87181802 MsG0380016732.01.T01:intron 40.0%
TGTTGAACAAGCTGCAGTTA+GGG - Chr3:87180794-87180813 MsG0380016732.01.T01:intron 40.0%
TGTTTATCCAAACAGGCTCT+TGG - Chr3:87181553-87181572 MsG0380016732.01.T01:three_prime_UTR 40.0%
TTGCTGAGTATGTGCAAGTA+GGG - Chr3:87182615-87182634 MsG0380016732.01.T01:intron 40.0%
TTGTTGAACAAGCTGCAGTT+AGG - Chr3:87180793-87180812 MsG0380016732.01.T01:intron 40.0%
! ATTTTCCACAGTTGGAGCAA+CGG + Chr3:87180636-87180655 None:intergenic 40.0%
! CTATCAAGCGTTTTCTTGTG+AGG - Chr3:87180766-87180785 MsG0380016732.01.T01:intron 40.0%
! CTTGGGCAATACCTACATTT+TGG - Chr3:87182543-87182562 MsG0380016732.01.T01:intron 40.0%
! TATTAGCTTCATCTAGGCAC+GGG + Chr3:87182400-87182419 None:intergenic 40.0%
AATGGAGGTCGTAACAAGCA+TGG - Chr3:87180589-87180608 MsG0380016732.01.T01:three_prime_UTR 45.0%
ACGTTCAAGCGTAGAAATGG+AGG - Chr3:87180574-87180593 MsG0380016732.01.T01:three_prime_UTR 45.0%
CACCACCATCCTTCACAAAT+TGG + Chr3:87181791-87181810 None:intergenic 45.0%
CAGACGTTCAAGCGTAGAAA+TGG - Chr3:87180571-87180590 MsG0380016732.01.T01:three_prime_UTR 45.0%
CTGTGGAAAATGCTGTCCTA+AGG - Chr3:87180645-87180664 MsG0380016732.01.T01:three_prime_UTR 45.0%
CTTTGACAGGTAAAAGGCCA+AGG - Chr3:87183216-87183235 MsG0380016732.01.T01:intron 45.0%
GGATGAATTTGACATGGCCA+CGG + Chr3:87180615-87180634 None:intergenic 45.0%
GGGCTTTGCTTAAATAGGCT+AGG + Chr3:87183268-87183287 None:intergenic 45.0%
GTCCAATTTGTGAAGGATGG+TGG - Chr3:87181786-87181805 MsG0380016732.01.T01:intron 45.0%
TATCCACTCTCACGTTGTGA+GGG - Chr3:87180992-87181011 MsG0380016732.01.T01:intron 45.0%
TATTTAAGCAAAGCCCGGCT+CGG - Chr3:87183272-87183291 MsG0380016732.01.T01:intron 45.0%
TCACCTACTCTTGCACATAG+GGG + Chr3:87183313-87183332 None:intergenic 45.0%
TGCTGAGTATGTGCAAGTAG+GGG - Chr3:87182616-87182635 MsG0380016732.01.T01:intron 45.0%
TGTTTATCCAAGCAGGCTCT+TGG - Chr3:87181639-87181658 MsG0380016732.01.T01:CDS 45.0%
! AGGACAGCATTTTCCACAGT+TGG + Chr3:87180644-87180663 None:intergenic 45.0%
!! CTTGGCCTTTTACCTGTCAA+AGG + Chr3:87183218-87183237 None:intergenic 45.0%
!! TAAAATAATAATAATAATTG+TGG + Chr3:87182891-87182910 None:intergenic 5.0%
AACGTGAGAGTGGATAGCAC+AGG + Chr3:87180988-87181007 None:intergenic 50.0%
ACAGCGTTTCATTAGGCGCA+GGG - Chr3:87181052-87181071 MsG0380016732.01.T01:intron 50.0%
AGCCTCCACAGCGTTTCATT+AGG - Chr3:87181045-87181064 MsG0380016732.01.T01:intron 50.0%
AGCTGCAGTTAGGGATGTTC+AGG - Chr3:87180803-87180822 MsG0380016732.01.T01:intron 50.0%
CATTTAGTAGGCCGAGCCAT+AGG + Chr3:87182671-87182690 None:intergenic 50.0%
CTACTCTTGCACATAGGGGT+CGG + Chr3:87183309-87183328 None:intergenic 50.0%
CTATCCACTCTCACGTTGTG+AGG - Chr3:87180991-87181010 MsG0380016732.01.T01:intron 50.0%
GAGCCGGGCTTTGCTTAAAT+AGG + Chr3:87183273-87183292 None:intergenic 50.0%
GAGTATGTGCAAGTAGGGGT+GGG - Chr3:87182620-87182639 MsG0380016732.01.T01:intron 50.0%
TGAGTATGTGCAAGTAGGGG+TGG - Chr3:87182619-87182638 MsG0380016732.01.T01:intron 50.0%
TTAAACGAGTTAGGCCGAGC+CGG + Chr3:87182695-87182714 None:intergenic 50.0%
TTCATCCGTTGCTCCAACTG+TGG - Chr3:87180628-87180647 MsG0380016732.01.T01:three_prime_UTR 50.0%
!! TTTTGAAGGATGACGCACCC+AGG - Chr3:87182322-87182341 MsG0380016732.01.T01:intron 50.0%
ACATAGGGGTCGGAATGAGC+CGG + Chr3:87183299-87183318 None:intergenic 55.0%
CACAGCGTTTCATTAGGCGC+AGG - Chr3:87181051-87181070 MsG0380016732.01.T01:intron 55.0%
CGACCCCTATGTGCAAGAGT+AGG - Chr3:87183307-87183326 MsG0380016732.01.T01:intron 55.0%
CGCCTAATGAAACGCTGTGG+AGG + Chr3:87181050-87181069 None:intergenic 55.0%
CTGCGCCTAATGAAACGCTG+TGG + Chr3:87181053-87181072 None:intergenic 55.0%
GTGCAAGTAGGGGTGGGAAT+AGG - Chr3:87182626-87182645 MsG0380016732.01.T01:intron 55.0%
TAAACGAGTTAGGCCGAGCC+GGG + Chr3:87182694-87182713 None:intergenic 55.0%
TGACCCTCACAACGTGAGAG+TGG + Chr3:87180998-87181017 None:intergenic 55.0%
! TCAGATCTCGCACTGACAGG+AGG - Chr3:87181015-87181034 MsG0380016732.01.T01:intron 55.0%
AGCTTCATCTAGGCACGGGC+TGG + Chr3:87182396-87182415 None:intergenic 60.0%
AGTAGGGGTGGGAATAGGCC+AGG - Chr3:87182631-87182650 MsG0380016732.01.T01:intron 60.0%
CATAGGGGTCGGAATGAGCC+GGG + Chr3:87183298-87183317 None:intergenic 60.0%
CATTTACGGGCCGGCCTGAT+AGG + Chr3:87182790-87182809 None:intergenic 60.0%
GGCCTACTAAATGCCCGGCT+CGG - Chr3:87182678-87182697 MsG0380016732.01.T01:intron 60.0%
GGCTCGGCCTACTAAATGCC+CGG - Chr3:87182673-87182692 MsG0380016732.01.T01:intron 60.0%
GGTCGTAACAAGCATGGCCG+TGG - Chr3:87180595-87180614 MsG0380016732.01.T01:three_prime_UTR 60.0%
! GGGTCAGATCTCGCACTGAC+AGG - Chr3:87181012-87181031 MsG0380016732.01.T01:intron 60.0%
!! TTCATCTAGGCACGGGCTGG+AGG + Chr3:87182393-87182412 None:intergenic 60.0%
AAGGATGACGCACCCAGGCC+CGG - Chr3:87182327-87182346 MsG0380016732.01.T01:intron 65.0%
GAGGAGCTCCTGGTCCAGCA+GGG + Chr3:87182374-87182393 None:intergenic 65.0%
GGCCGAGCCGGGCATTTAGT+AGG + Chr3:87182683-87182702 None:intergenic 65.0%
AATAGGCCAGGCCGCCCGTC+AGG - Chr3:87182643-87182662 MsG0380016732.01.T01:intron 70.0%
AGCAGGGCGTGGGGCTTGAC+CGG + Chr3:87182358-87182377 None:intergenic 70.0%
AGCCATAGGCCCCTGACGGG+CGG + Chr3:87182657-87182676 None:intergenic 70.0%
ATAGGCCAGGCCGCCCGTCA+GGG - Chr3:87182644-87182663 MsG0380016732.01.T01:intron 70.0%
CCCGTCAGGGGCCTATGGCT+CGG - Chr3:87182657-87182676 MsG0380016732.01.T01:intron 70.0%
CCGAGCCATAGGCCCCTGAC+GGG + Chr3:87182660-87182679 None:intergenic 70.0%
CTCCTGGTCCAGCAGGGCGT+GGG + Chr3:87182368-87182387 None:intergenic 70.0%
GCCGAGCCATAGGCCCCTGA+CGG + Chr3:87182661-87182680 None:intergenic 70.0%
GGAGGAGCTCCTGGTCCAGC+AGG + Chr3:87182375-87182394 None:intergenic 70.0%
TCCTGGTCCAGCAGGGCGTG+GGG + Chr3:87182367-87182386 None:intergenic 70.0%
!! AAGCAAAGCCCGGCTCGGCC+CGG - Chr3:87183277-87183296 MsG0380016732.01.T01:intron 70.0%
CGGAATGAGCCGGGCCGAGC+CGG + Chr3:87183289-87183308 None:intergenic 75.0%
GCAGGGCGTGGGGCTTGACC+GGG + Chr3:87182357-87182376 None:intergenic 75.0%
GCTCCTGGTCCAGCAGGGCG+TGG + Chr3:87182369-87182388 None:intergenic 75.0%
GGAATGAGCCGGGCCGAGCC+GGG + Chr3:87183288-87183307 None:intergenic 75.0%
GGTCAAGCCCCACGCCCTGC+TGG - Chr3:87182357-87182376 MsG0380016732.01.T01:intron 75.0%
TAGGCCAGGCCGCCCGTCAG+GGG - Chr3:87182645-87182664 MsG0380016732.01.T01:intron 75.0%
!! GCACGGGCTGGAGGAGCTCC+TGG + Chr3:87182384-87182403 None:intergenic 75.0%
!! TGGGGCTTGACCGGGCTGGC+CGG + Chr3:87182349-87182368 None:intergenic 75.0%
! GCCCCACGCCCTGCTGGACC+AGG - Chr3:87182363-87182382 MsG0380016732.01.T01:intron 80.0%
! GGCCGCCCGTCAGGGGCCTA+TGG - Chr3:87182652-87182671 MsG0380016732.01.T01:intron 80.0%
! GGCGTGGGGCTTGACCGGGC+TGG + Chr3:87182353-87182372 None:intergenic 80.0%
!! TAGGCCCCTGACGGGCGGCC+TGG + Chr3:87182652-87182671 None:intergenic 80.0%
!!! GGGGCTTGACCGGGCTGGCC+GGG + Chr3:87182348-87182367 None:intergenic 80.0%
!!! TGACCGGGCTGGCCGGGCCT+GGG + Chr3:87182342-87182361 None:intergenic 80.0%
!!! TTGACCGGGCTGGCCGGGCC+TGG + Chr3:87182343-87182362 None:intergenic 80.0%
! GCACCCAGGCCCGGCCAGCC+CGG - Chr3:87182336-87182355 MsG0380016732.01.T01:intron 85.0%
Chromosome Type Strat End Strand Name
Chr3 gene 87180565 87183428 87180565 ID=MsG0380016732.01;Name=MsG0380016732.01
Chr3 mRNA 87180565 87183428 87180565 ID=MsG0380016732.01.T01;Parent=MsG0380016732.01;Name=MsG0380016732.01.T01;_AED=0.48;_eAED=0.49;_QI=0|1|0.8|1|0.75|0.6|5|330|132
Chr3 exon 87180565 87180670 87180565 ID=MsG0380016732.01.T01:exon:22470;Parent=MsG0380016732.01.T01
Chr3 exon 87181362 87181663 87181362 ID=MsG0380016732.01.T01:exon:22469;Parent=MsG0380016732.01.T01
Chr3 exon 87182920 87183053 87182920 ID=MsG0380016732.01.T01:exon:22468;Parent=MsG0380016732.01.T01
Chr3 exon 87183150 87183234 87183150 ID=MsG0380016732.01.T01:exon:22467;Parent=MsG0380016732.01.T01
Chr3 exon 87183327 87183428 87183327 ID=MsG0380016732.01.T01:exon:22466;Parent=MsG0380016732.01.T01
Chr3 CDS 87183327 87183428 87183327 ID=MsG0380016732.01.T01:cds;Parent=MsG0380016732.01.T01
Chr3 CDS 87183150 87183234 87183150 ID=MsG0380016732.01.T01:cds;Parent=MsG0380016732.01.T01
Chr3 CDS 87182920 87183053 87182920 ID=MsG0380016732.01.T01:cds;Parent=MsG0380016732.01.T01
Chr3 CDS 87181586 87181663 87181586 ID=MsG0380016732.01.T01:cds;Parent=MsG0380016732.01.T01
Chr3 three_prime_UTR 87181362 87181585 87181362 ID=MsG0380016732.01.T01:three_prime_utr;Parent=MsG0380016732.01.T01
Chr3 three_prime_UTR 87180565 87180670 87180565 ID=MsG0380016732.01.T01:three_prime_utr;Parent=MsG0380016732.01.T01
Gene Sequence

>MsG0380016732.01.T01

TTGTTTCAGACGTTCAAGCGTAGAAATGGAGGTCGTAACAAGCATGGCCGTGGCCATGTCAAATTCATCCGTTGCTCCAACTGTGGAAAATGCTGTCCTAAGGATAAAGCTATCAAGCGTTTTCTTGTGAGGAACATTGTTGAACAAGCTGCAGTTAGGGATGTTCAGGAAGCTTGTGTTTATGATCAATACACTCTCCCTAAGCTCTATGTGAAGATGCAGTATTGTGTTTCCTGTGCTATCCACTCTCACGTTGTGAGGGTCAGATCTCGCACTGACAGGAGGAAGCGTGAGCCTCCACAGCGTTTCATTAGGCGCAGGGATGACGCACCCAGGCCCGGCCAGCCCGGTCAAGCCCCACGCCCTGCTGGACCAGGAGCTCCTCCAGCCCGTGCCTAG
Protein sequence

>MsG0380016732.01.T01

LFQTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYVKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDAPRPGQPGQAPRPAGPGAPPARA*