Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580030249.01.T01 | XP_003593269.1 | 94.416 | 197 | 11 | 0 | 1 | 197 | 1 | 197 | 1.49E-138 | 395 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580030249.01.T01 | Q86V88 | 43.671 | 158 | 72 | 3 | 22 | 164 | 4 | 159 | 4.36E-35 | 124 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580030249.01.T01 | Q2HVA6 | 94.416 | 197 | 11 | 0 | 1 | 197 | 1 | 197 | 7.12e-139 | 395 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180000806.01 | MsG0580030249.01 | 0.800172 | 1.632536e-48 | 7.550166e-46 |
| MsG0180001599.01 | MsG0580030249.01 | 0.816713 | 4.798311e-52 | 3.425672e-49 |
| MsG0180002547.01 | MsG0580030249.01 | 0.816464 | 5.457101e-52 | 3.869327e-49 |
| MsG0180003744.01 | MsG0580030249.01 | 0.824270 | 8.839448e-54 | 7.791657e-51 |
| MsG0180004050.01 | MsG0580030249.01 | 0.804914 | 1.718363e-49 | 8.970280e-47 |
| MsG0180004861.01 | MsG0580030249.01 | 0.831225 | 1.883138e-55 | 2.030650e-52 |
| MsG0280011307.01 | MsG0580030249.01 | 0.845345 | 4.302371e-59 | 7.148754e-56 |
| MsG0380011747.01 | MsG0580030249.01 | 0.800895 | 1.162789e-48 | 5.477722e-46 |
| MsG0480021041.01 | MsG0580030249.01 | 0.801357 | 9.353508e-49 | 4.457885e-46 |
| MsG0480021735.01 | MsG0580030249.01 | 0.800351 | 1.501285e-48 | 6.975121e-46 |
| MsG0480021832.01 | MsG0580030249.01 | 0.805080 | 1.586166e-49 | 8.314960e-47 |
| MsG0480022292.01 | MsG0580030249.01 | 0.814011 | 1.913783e-51 | 1.269378e-48 |
| MsG0480022960.01 | MsG0580030249.01 | 0.823750 | 1.170777e-53 | 1.017143e-50 |
| MsG0480023356.01 | MsG0580030249.01 | 0.807161 | 5.786101e-50 | 3.199603e-47 |
| MsG0580024619.01 | MsG0580030249.01 | 0.801359 | 9.347954e-49 | 4.455382e-46 |
| MsG0580024727.01 | MsG0580030249.01 | 0.833170 | 6.220183e-56 | 7.106320e-53 |
| MsG0580025268.01 | MsG0580030249.01 | 0.807700 | 4.448122e-50 | 2.494387e-47 |
| MsG0580025756.01 | MsG0580030249.01 | 0.814360 | 1.602724e-51 | 1.073126e-48 |
| MsG0380016133.01 | MsG0580030249.01 | 0.834035 | 3.782238e-56 | 4.434530e-53 |
| MsG0380016559.01 | MsG0580030249.01 | 0.802988 | 4.319166e-49 | 2.145511e-46 |
| MsG0380016560.01 | MsG0580030249.01 | 0.809112 | 2.222577e-50 | 1.293666e-47 |
| MsG0380016604.01 | MsG0580030249.01 | 0.838630 | 2.565929e-57 | 3.457248e-54 |
| MsG0380016636.01 | MsG0580030249.01 | 0.804941 | 1.696614e-49 | 8.862601e-47 |
| MsG0380017540.01 | MsG0580030249.01 | 0.840504 | 8.356814e-58 | 1.192851e-54 |
| MsG0380017979.01 | MsG0580030249.01 | 0.804468 | 2.128797e-49 | 1.098460e-46 |
| MsG0380018033.01 | MsG0580030249.01 | 0.837571 | 4.804213e-57 | 6.266270e-54 |
| MsG0380018044.01 | MsG0580030249.01 | 0.809894 | 1.509812e-50 | 8.971968e-48 |
| MsG0580026225.01 | MsG0580030249.01 | 0.818426 | 1.972134e-52 | 1.475839e-49 |
| MsG0580027462.01 | MsG0580030249.01 | 0.810516 | 1.108604e-50 | 6.696321e-48 |
| MsG0580030249.01 | MsG0680031828.01 | 0.855183 | 7.482421e-62 | 1.712689e-58 |
| MsG0580030249.01 | MsG0680035877.01 | 0.800075 | 1.708377e-48 | 7.881694e-46 |
| MsG0580030249.01 | MsG0780039340.01 | 0.805654 | 1.202759e-49 | 6.398803e-47 |
| MsG0580030249.01 | MsG0780040569.01 | 0.803894 | 2.803647e-49 | 1.425588e-46 |
| MsG0580030249.01 | MsG0780040845.01 | 0.809109 | 2.225340e-50 | 1.295200e-47 |
| MsG0580030249.01 | MsG0780041210.01 | 0.802036 | 6.787091e-49 | 3.290779e-46 |
| MsG0580030249.01 | MsG0780041490.01 | 0.807575 | 4.726368e-50 | 2.641797e-47 |
| MsG0580030249.01 | MsG0880042033.01 | 0.858361 | 8.684114e-63 | 2.210560e-59 |
| MsG0580030249.01 | MsG0880044990.01 | 0.830691 | 2.546348e-55 | 2.702900e-52 |
| MsG0580030249.01 | MsG0880045656.01 | 0.839251 | 1.771964e-57 | 2.432913e-54 |
| MsG0580030249.01 | MsG0880046068.01 | 0.816489 | 5.386691e-52 | 3.822042e-49 |
| MsG0580030249.01 | MsG0880046089.01 | 0.812349 | 4.433736e-51 | 2.812410e-48 |
| MsG0280007847.01 | MsG0580030249.01 | 0.829976 | 3.806929e-55 | 3.957816e-52 |
| MsG0280008417.01 | MsG0580030249.01 | 0.802581 | 5.240746e-49 | 2.576529e-46 |
| MsG0280008756.01 | MsG0580030249.01 | 0.805188 | 1.506160e-49 | 7.917298e-47 |
| MsG0280008758.01 | MsG0580030249.01 | 0.810476 | 1.130854e-50 | 6.823587e-48 |
| MsG0280009575.01 | MsG0580030249.01 | 0.821320 | 4.297930e-53 | 3.485126e-50 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580030249.01.T01 | MTR_2g009600 | 94.416 | 197 | 11 | 0 | 1 | 197 | 1 | 197 | 1.81e-142 | 395 |
| MsG0580030249.01.T01 | MTR_4g093560 | 68.208 | 173 | 54 | 1 | 3 | 175 | 2 | 173 | 5.75e-87 | 254 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580030249.01.T01 | AT2G14110 | 67.391 | 184 | 60 | 0 | 4 | 187 | 2 | 185 | 2.66e-95 | 275 |
| MsG0580030249.01.T01 | AT2G14110 | 69.173 | 133 | 41 | 0 | 4 | 136 | 2 | 134 | 1.61e-70 | 211 |
Find 50 sgRNAs with CRISPR-Local
Find 91 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCATATAGGTCTCTAAAA+TGG | 0.182821 | 5:+108919543 | MsG0580030249.01.T01:intron |
| AGTGCTTTAATAAATATTTA+TGG | 0.205351 | 5:-108918105 | None:intergenic |
| AATGGGAGTGACTAGCATTT+TGG | 0.255669 | 5:+108919561 | MsG0580030249.01.T01:CDS |
| AGATCGAAAACAACGAGTTT+TGG | 0.286511 | 5:-108918295 | None:intergenic |
| TTACCTCTGGCTTGTGTACT+TGG | 0.288727 | 5:+108919864 | MsG0580030249.01.T01:three_prime_UTR |
| GTTGATAATGGGGTAAATCT+TGG | 0.322461 | 5:+108919583 | MsG0580030249.01.T01:CDS |
| TGCTTCGTTCTTTGTTGCTC+AGG | 0.352190 | 5:+108918495 | MsG0580030249.01.T01:CDS |
| ATCTGGCTTCTTAGAATAAT+CGG | 0.355976 | 5:-108919680 | None:intergenic |
| TACTTGGACACTGAATTTGA+TGG | 0.360359 | 5:-108919718 | None:intergenic |
| CAGAGAATTCATTCAACTAC+TGG | 0.369761 | 5:+108918640 | MsG0580030249.01.T01:CDS |
| GGGGCAGGGTTGGAAGTATC+TGG | 0.390571 | 5:-108919697 | None:intergenic |
| CACAAAAGAACAAGCAGAAA+TGG | 0.391792 | 5:+108919653 | MsG0580030249.01.T01:CDS |
| GCTCAATCAAATTAATCGTT+GGG | 0.398355 | 5:+108918181 | MsG0580030249.01.T01:five_prime_UTR |
| CGCTCAATCAAATTAATCGT+TGG | 0.422131 | 5:+108918180 | MsG0580030249.01.T01:five_prime_UTR |
| TCACGCCATGGGAATCTTGT+TGG | 0.443268 | 5:+108918384 | MsG0580030249.01.T01:CDS |
| GAGCAGAGAGAAAGCGAAAT+GGG | 0.444666 | 5:+108918211 | MsG0580030249.01.T01:exon |
| AGAGCAGAGAGAAAGCGAAA+TGG | 0.444737 | 5:+108918210 | MsG0580030249.01.T01:exon |
| TTCATATAGGTCTCTAAAAT+GGG | 0.446794 | 5:+108919544 | MsG0580030249.01.T01:intron |
| GACACTGAATTTGATGGGGC+AGG | 0.450210 | 5:-108919712 | None:intergenic |
| TTCAGGAAATATATTCGAGT+TGG | 0.451128 | 5:+108918596 | MsG0580030249.01.T01:intron |
| CAAGCCAGAGGTAACATGTT+TGG | 0.455417 | 5:-108919855 | None:intergenic |
| TCGATCTCGATTACACTCTC+TGG | 0.456392 | 5:+108918311 | MsG0580030249.01.T01:CDS |
| GAGGTAACATGTTTGGCCTT+CGG | 0.467860 | 5:-108919848 | None:intergenic |
| TGAATTTGATGGGGCAGGGT+TGG | 0.470475 | 5:-108919707 | None:intergenic |
| ACTTGGACACTGAATTTGAT+GGG | 0.475320 | 5:-108919717 | None:intergenic |
| GTTATGATCATCGATGTTGA+TGG | 0.481888 | 5:-108918129 | None:intergenic |
| AAGCGAAATGGGAGAGTCTA+CGG | 0.501518 | 5:+108918222 | MsG0580030249.01.T01:exon |
| CTGTGTAAGACCTTGAGATA+AGG | 0.502192 | 5:-108919608 | None:intergenic |
| ATTGAGACTACAATTCAAGT+AGG | 0.515093 | 5:-108919818 | None:intergenic |
| GATCGACACTCGCAGTAGAA+AGG | 0.521923 | 5:-108918334 | None:intergenic |
| TTCTCTATATCCTCACGCCA+TGG | 0.522583 | 5:+108918372 | MsG0580030249.01.T01:CDS |
| TAGAGAAGGAGTTTCGCGCT+TGG | 0.523146 | 5:-108918356 | None:intergenic |
| GCTTTAGCAATATCCGCAGT+TGG | 0.525120 | 5:-108918451 | None:intergenic |
| TTCGAGTTGGACTCATAAAA+CGG | 0.526393 | 5:+108918609 | MsG0580030249.01.T01:CDS |
| TCTCTATATCCTCACGCCAT+GGG | 0.543540 | 5:+108918373 | MsG0580030249.01.T01:CDS |
| AAGGCCAAACATGTTACCTC+TGG | 0.557299 | 5:+108919851 | MsG0580030249.01.T01:three_prime_UTR |
| CTCAATCAAATTAATCGTTG+GGG | 0.565833 | 5:+108918182 | MsG0580030249.01.T01:five_prime_UTR |
| ACACTGAATTTGATGGGGCA+GGG | 0.579075 | 5:-108919711 | None:intergenic |
| AATGGGAGAGTCTACGGAGA+AGG | 0.592110 | 5:+108918228 | MsG0580030249.01.T01:exon |
| AATCTTGGAGCCTTATCTCA+AGG | 0.607734 | 5:+108919598 | MsG0580030249.01.T01:CDS |
| CGCTTCTCGATCTCCAACTG+CGG | 0.610594 | 5:+108918438 | MsG0580030249.01.T01:CDS |
| AAGCGCCAACAAGATTCCCA+TGG | 0.623290 | 5:-108918389 | None:intergenic |
| AACAAGATTCCCATGGCGTG+AGG | 0.632713 | 5:-108918382 | None:intergenic |
| ATGGCGTGAGGATATAGAGA+AGG | 0.642651 | 5:-108918370 | None:intergenic |
| CTTGGACACTGAATTTGATG+GGG | 0.656354 | 5:-108919716 | None:intergenic |
| AGTCTCAATCAAATTACCGA+AGG | 0.656652 | 5:+108919832 | MsG0580030249.01.T01:three_prime_UTR |
| TTGTTGGCGCTTAAACACAA+AGG | 0.670200 | 5:+108918400 | MsG0580030249.01.T01:CDS |
| TGAGAATAGAAACACACAAG+CGG | 0.678956 | 5:+108918696 | MsG0580030249.01.T01:CDS |
| TCAATCAAATTAATCGTTGG+GGG | 0.692972 | 5:+108918183 | MsG0580030249.01.T01:five_prime_UTR |
| ATGCCAAGTACACAAGCCAG+AGG | 0.700436 | 5:-108919867 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGTGCTTTAATAAATATTTA+TGG | - | Chr5:108918108-108918127 | None:intergenic | 15.0% |
| !! | TGAATTAAACAATAAATTCA+AGG | - | Chr5:108918928-108918947 | None:intergenic | 15.0% |
| !! | TTGTTTATATCATTTCATAT+AGG | + | Chr5:108919531-108919550 | MsG0580030249.01.T01:intron | 15.0% |
| !!! | AAAGCTTTTCTTAATAAATT+GGG | + | Chr5:108918469-108918488 | MsG0580030249.01.T01:CDS | 15.0% |
| !!! | ATCCAAATTTTTTTTTTACT+TGG | - | Chr5:108919737-108919756 | None:intergenic | 15.0% |
| !!! | ATTTTTTACTAAAATCACAT+TGG | - | Chr5:108918787-108918806 | None:intergenic | 15.0% |
| !!! | TAAAGCTTTTCTTAATAAAT+TGG | + | Chr5:108918468-108918487 | MsG0580030249.01.T01:CDS | 15.0% |
| !! | AAGGCTAAAAATTATTATAG+AGG | - | Chr5:108918909-108918928 | None:intergenic | 20.0% |
| !! | GTCCAAGTAAAAAAAAAATT+TGG | + | Chr5:108919732-108919751 | MsG0580030249.01.T01:exon | 20.0% |
| !! | TGAACAAAACAACAAAAATT+AGG | - | Chr5:108918580-108918599 | None:intergenic | 20.0% |
| !!! | AATCATTTTATAGCTTGTTT+TGG | + | Chr5:108919010-108919029 | MsG0580030249.01.T01:intron | 20.0% |
| !!! | TAATTTTTGTTGTTTTGTTC+AGG | + | Chr5:108918579-108918598 | MsG0580030249.01.T01:intron | 20.0% |
| !!! | TATATCATATGCATCATTTT+TGG | - | Chr5:108919445-108919464 | None:intergenic | 20.0% |
| !!! | TTTAGCTTGATATTAGAATT+TGG | + | Chr5:108918875-108918894 | MsG0580030249.01.T01:intron | 20.0% |
| !! | TAACAATGATAGTGTATGTT+TGG | + | Chr5:108918732-108918751 | MsG0580030249.01.T01:intron | 25.0% |
| !! | TTGAACAAAAGTTTCACTTT+TGG | + | Chr5:108918825-108918844 | MsG0580030249.01.T01:intron | 25.0% |
| !! | TTTCATATAGGTCTCTAAAA+TGG | + | Chr5:108919543-108919562 | MsG0580030249.01.T01:intron | 25.0% |
| !!! | TTCATATAGGTCTCTAAAAT+GGG | + | Chr5:108919544-108919563 | MsG0580030249.01.T01:intron | 25.0% |
| AAGTGAGTTTGACAAAATCA+TGG | - | Chr5:108919417-108919436 | None:intergenic | 30.0% | |
| AGTCACTTAGTTGGAAAAAT+GGG | - | Chr5:108919501-108919520 | None:intergenic | 30.0% | |
| ATAGTGTATGTTTGGATTGA+TGG | + | Chr5:108918740-108918759 | MsG0580030249.01.T01:intron | 30.0% | |
| ATTGAGACTACAATTCAAGT+AGG | - | Chr5:108919821-108919840 | None:intergenic | 30.0% | |
| CTCAATCAAATTAATCGTTG+GGG | + | Chr5:108918182-108918201 | MsG0580030249.01.T01:five_prime_UTR | 30.0% | |
| GCTCAATCAAATTAATCGTT+GGG | + | Chr5:108918181-108918200 | MsG0580030249.01.T01:five_prime_UTR | 30.0% | |
| GTAAGTTGTTTATCCAAACA+CGG | + | Chr5:108919339-108919358 | MsG0580030249.01.T01:intron | 30.0% | |
| TCAATCAAATTAATCGTTGG+GGG | + | Chr5:108918183-108918202 | MsG0580030249.01.T01:five_prime_UTR | 30.0% | |
| TTCAGGAAATATATTCGAGT+TGG | + | Chr5:108918596-108918615 | MsG0580030249.01.T01:intron | 30.0% | |
| TTGATGTATGTTTGGTTAAG+TGG | + | Chr5:108919039-108919058 | MsG0580030249.01.T01:intron | 30.0% | |
| ! | ATCTGGCTTCTTAGAATAAT+CGG | - | Chr5:108919683-108919702 | None:intergenic | 30.0% |
| ! | GTTTACAGTAGAGTCAATTT+TGG | + | Chr5:108919119-108919138 | MsG0580030249.01.T01:intron | 30.0% |
| ! | TAGTCTAAAAAGTGAGTTGA+AGG | - | Chr5:108918990-108919009 | None:intergenic | 30.0% |
| !!! | ACTAGCATTTTGGTTGATAA+TGG | + | Chr5:108919571-108919590 | MsG0580030249.01.T01:CDS | 30.0% |
| !!! | CACACTTCTAGAATCAATTT+TGG | + | Chr5:108919192-108919211 | MsG0580030249.01.T01:intron | 30.0% |
| !!! | CTAGCATTTTGGTTGATAAT+GGG | + | Chr5:108919572-108919591 | MsG0580030249.01.T01:CDS | 30.0% |
| !!! | TAGCATTTTGGTTGATAATG+GGG | + | Chr5:108919573-108919592 | MsG0580030249.01.T01:CDS | 30.0% |
| ACTTGGACACTGAATTTGAT+GGG | - | Chr5:108919720-108919739 | None:intergenic | 35.0% | |
| AGTCTCAATCAAATTACCGA+AGG | + | Chr5:108919832-108919851 | MsG0580030249.01.T01:three_prime_UTR | 35.0% | |
| ATTATGAACAAGACCGTGTT+TGG | - | Chr5:108919355-108919374 | None:intergenic | 35.0% | |
| CACAAAAGAACAAGCAGAAA+TGG | + | Chr5:108919653-108919672 | MsG0580030249.01.T01:CDS | 35.0% | |
| CAGAGAATTCATTCAACTAC+TGG | + | Chr5:108918640-108918659 | MsG0580030249.01.T01:CDS | 35.0% | |
| CAGTCACTTAGTTGGAAAAA+TGG | - | Chr5:108919502-108919521 | None:intergenic | 35.0% | |
| CGCTCAATCAAATTAATCGT+TGG | + | Chr5:108918180-108918199 | MsG0580030249.01.T01:five_prime_UTR | 35.0% | |
| GTTATGATCATCGATGTTGA+TGG | - | Chr5:108918132-108918151 | None:intergenic | 35.0% | |
| TACTTGGACACTGAATTTGA+TGG | - | Chr5:108919721-108919740 | None:intergenic | 35.0% | |
| TCCAACAGATAAGCTCAAAT+GGG | - | Chr5:108919235-108919254 | None:intergenic | 35.0% | |
| TGAGAATAGAAACACACAAG+CGG | + | Chr5:108918696-108918715 | MsG0580030249.01.T01:CDS | 35.0% | |
| TGAGTTTGACAAAATCATGG+TGG | - | Chr5:108919414-108919433 | None:intergenic | 35.0% | |
| TTCCAACAGATAAGCTCAAA+TGG | - | Chr5:108919236-108919255 | None:intergenic | 35.0% | |
| ! | AGATCGAAAACAACGAGTTT+TGG | - | Chr5:108918298-108918317 | None:intergenic | 35.0% |
| ! | TTACACAGTTTTCTCGAAAC+TGG | + | Chr5:108919623-108919642 | MsG0580030249.01.T01:CDS | 35.0% |
| !! | AAAAAGAGCATCGAGCTAAA+TGG | - | Chr5:108918670-108918689 | None:intergenic | 35.0% |
| !! | GGATTGACTTGATGTATGTT+TGG | + | Chr5:108919031-108919050 | MsG0580030249.01.T01:intron | 35.0% |
| !! | GTTGATAATGGGGTAAATCT+TGG | + | Chr5:108919583-108919602 | MsG0580030249.01.T01:CDS | 35.0% |
| !! | TTCGAGTTGGACTCATAAAA+CGG | + | Chr5:108918609-108918628 | MsG0580030249.01.T01:CDS | 35.0% |
| !!! | AATTTTGGCTCCTCCAAAAA+TGG | + | Chr5:108919207-108919226 | MsG0580030249.01.T01:intron | 35.0% |
| ACCCATTTGAGCTTATCTGT+TGG | + | Chr5:108919231-108919250 | MsG0580030249.01.T01:intron | 40.0% | |
| ATCAAATTAATCGTTGGGGG+AGG | + | Chr5:108918186-108918205 | MsG0580030249.01.T01:five_prime_UTR | 40.0% | |
| CTGTGTAAGACCTTGAGATA+AGG | - | Chr5:108919611-108919630 | None:intergenic | 40.0% | |
| CTTGGACACTGAATTTGATG+GGG | - | Chr5:108919719-108919738 | None:intergenic | 40.0% | |
| TCAAATTAATCGTTGGGGGA+GGG | + | Chr5:108918187-108918206 | MsG0580030249.01.T01:five_prime_UTR | 40.0% | |
| TTATGCAGCAGTCACTTAGT+TGG | - | Chr5:108919510-108919529 | None:intergenic | 40.0% | |
| TTGTTGGCGCTTAAACACAA+AGG | + | Chr5:108918400-108918419 | MsG0580030249.01.T01:CDS | 40.0% | |
| ! | AATCTTGGAGCCTTATCTCA+AGG | + | Chr5:108919598-108919617 | MsG0580030249.01.T01:CDS | 40.0% |
| ! | AATGGGAGTGACTAGCATTT+TGG | + | Chr5:108919561-108919580 | MsG0580030249.01.T01:CDS | 40.0% |
| !! | CAAATGGGTTCCATTTTTGG+AGG | - | Chr5:108919220-108919239 | None:intergenic | 40.0% |
| !! | GCTCAAATGGGTTCCATTTT+TGG | - | Chr5:108919223-108919242 | None:intergenic | 40.0% |
| AAGCGAAATGGGAGAGTCTA+CGG | + | Chr5:108918222-108918241 | MsG0580030249.01.T01:exon | 45.0% | |
| AAGGCCAAACATGTTACCTC+TGG | + | Chr5:108919851-108919870 | MsG0580030249.01.T01:three_prime_UTR | 45.0% | |
| ACACTGAATTTGATGGGGCA+GGG | - | Chr5:108919714-108919733 | None:intergenic | 45.0% | |
| AGAGCAGAGAGAAAGCGAAA+TGG | + | Chr5:108918210-108918229 | MsG0580030249.01.T01:exon | 45.0% | |
| ATGGCGTGAGGATATAGAGA+AGG | - | Chr5:108918373-108918392 | None:intergenic | 45.0% | |
| CAAGCCAGAGGTAACATGTT+TGG | - | Chr5:108919858-108919877 | None:intergenic | 45.0% | |
| GAGCAGAGAGAAAGCGAAAT+GGG | + | Chr5:108918211-108918230 | MsG0580030249.01.T01:exon | 45.0% | |
| GCTTTAGCAATATCCGCAGT+TGG | - | Chr5:108918454-108918473 | None:intergenic | 45.0% | |
| TCGATCTCGATTACACTCTC+TGG | + | Chr5:108918311-108918330 | MsG0580030249.01.T01:CDS | 45.0% | |
| TCTCTATATCCTCACGCCAT+GGG | + | Chr5:108918373-108918392 | MsG0580030249.01.T01:CDS | 45.0% | |
| TGCTTCGTTCTTTGTTGCTC+AGG | + | Chr5:108918495-108918514 | MsG0580030249.01.T01:CDS | 45.0% | |
| TTCTCTATATCCTCACGCCA+TGG | + | Chr5:108918372-108918391 | MsG0580030249.01.T01:CDS | 45.0% | |
| ! | GAGGTAACATGTTTGGCCTT+CGG | - | Chr5:108919851-108919870 | None:intergenic | 45.0% |
| ! | TTACCTCTGGCTTGTGTACT+TGG | + | Chr5:108919864-108919883 | MsG0580030249.01.T01:three_prime_UTR | 45.0% |
| AACAAGATTCCCATGGCGTG+AGG | - | Chr5:108918385-108918404 | None:intergenic | 50.0% | |
| AAGCGCCAACAAGATTCCCA+TGG | - | Chr5:108918392-108918411 | None:intergenic | 50.0% | |
| AATGGGAGAGTCTACGGAGA+AGG | + | Chr5:108918228-108918247 | MsG0580030249.01.T01:exon | 50.0% | |
| ATGCCAAGTACACAAGCCAG+AGG | - | Chr5:108919870-108919889 | None:intergenic | 50.0% | |
| GACACTGAATTTGATGGGGC+AGG | - | Chr5:108919715-108919734 | None:intergenic | 50.0% | |
| GATCGACACTCGCAGTAGAA+AGG | - | Chr5:108918337-108918356 | None:intergenic | 50.0% | |
| TAGAGAAGGAGTTTCGCGCT+TGG | - | Chr5:108918359-108918378 | None:intergenic | 50.0% | |
| TCACGCCATGGGAATCTTGT+TGG | + | Chr5:108918384-108918403 | MsG0580030249.01.T01:CDS | 50.0% | |
| TGAATTTGATGGGGCAGGGT+TGG | - | Chr5:108919710-108919729 | None:intergenic | 50.0% | |
| CGCTTCTCGATCTCCAACTG+CGG | + | Chr5:108918438-108918457 | MsG0580030249.01.T01:CDS | 55.0% | |
| !! | GGGGCAGGGTTGGAAGTATC+TGG | - | Chr5:108919700-108919719 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 108918099 | 108919926 | 108918099 | ID=MsG0580030249.01;Name=MsG0580030249.01 |
| Chr5 | mRNA | 108918099 | 108919926 | 108918099 | ID=MsG0580030249.01.T01;Parent=MsG0580030249.01;Name=MsG0580030249.01.T01;_AED=0.29;_eAED=0.29;_QI=130|1|1|1|1|1|3|185|197 |
| Chr5 | exon | 108918099 | 108918516 | 108918099 | ID=MsG0580030249.01.T01:exon:15401;Parent=MsG0580030249.01.T01 |
| Chr5 | exon | 108918601 | 108918717 | 108918601 | ID=MsG0580030249.01.T01:exon:15402;Parent=MsG0580030249.01.T01 |
| Chr5 | exon | 108919553 | 108919926 | 108919553 | ID=MsG0580030249.01.T01:exon:15403;Parent=MsG0580030249.01.T01 |
| Chr5 | five_prime_UTR | 108918099 | 108918228 | 108918099 | ID=MsG0580030249.01.T01:five_prime_utr;Parent=MsG0580030249.01.T01 |
| Chr5 | CDS | 108918229 | 108918516 | 108918229 | ID=MsG0580030249.01.T01:cds;Parent=MsG0580030249.01.T01 |
| Chr5 | CDS | 108918601 | 108918717 | 108918601 | ID=MsG0580030249.01.T01:cds;Parent=MsG0580030249.01.T01 |
| Chr5 | CDS | 108919553 | 108919741 | 108919553 | ID=MsG0580030249.01.T01:cds;Parent=MsG0580030249.01.T01 |
| Chr5 | three_prime_UTR | 108919742 | 108919926 | 108919742 | ID=MsG0580030249.01.T01:three_prime_utr;Parent=MsG0580030249.01.T01 |
| Gene Sequence |
| Protein sequence |
