AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880044990.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880044990.01.T01 MTR_8g063230 98.936 188 2 0 1 188 1 188 3.05e-139 386
MsG0880044990.01.T01 MTR_8g461280 75.532 188 43 1 2 186 102 289 6.76e-98 286
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880044990.01.T01 AT1G24050 54.444 180 80 1 8 185 9 188 1.99e-66 202
MsG0880044990.01.T01 AT1G70220 41.420 169 92 3 16 182 18 181 1.87e-40 135
MsG0880044990.01.T01 AT1G70220 33.971 209 91 4 16 182 18 221 6.20e-33 117

Find 108 sgRNAs with CRISPR-Local

Find 358 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAAGAGTTGTTTGAGAGTT+AGG 0.219113 8:-52509952 MsG0880044990.01.T01:three_prime_UTR
ACAAAATTTGCATCCTATAA+TGG 0.232664 8:-52510396 MsG0880044990.01.T01:three_prime_UTR
AGAAAGGTAGGGAGGGGCTT+TGG 0.253504 8:-52509927 MsG0880044990.01.T01:three_prime_UTR
GAAAGGTAGGGAGGGGCTTT+GGG 0.263936 8:-52509926 MsG0880044990.01.T01:three_prime_UTR
TTCATTATTTCTAAACCTTT+TGG 0.268438 8:-52510291 MsG0880044990.01.T01:three_prime_UTR
ATATTAATGCTCTTCAATCT+AGG 0.278261 8:-52514398 MsG0880044990.01.T01:CDS
TTTATTTCTAAAACCTTGTT+TGG 0.286288 8:-52510216 MsG0880044990.01.T01:three_prime_UTR
ATGTGAGTTGATGAAGTTAA+AGG 0.292355 8:-52509601 MsG0880044990.01.T01:three_prime_UTR
GTTTCTTTCTCAACCATTAT+AGG 0.300046 8:+52510383 None:intergenic
TCATCTTATCTTTACTTTGT+AGG 0.306239 8:-52510147 MsG0880044990.01.T01:three_prime_UTR
AGGTTGCAACTTCGCGGTTC+TGG 0.309308 8:-52510433 MsG0880044990.01.T01:CDS
AAAGTTATTAAAACTCTCTA+AGG 0.319159 8:+52509751 None:intergenic
TTATCTGACATTATTTCATA+TGG 0.326428 8:-52509542 MsG0880044990.01.T01:three_prime_UTR
ATGCTACATAAAACTAATAA+TGG 0.332124 8:+52509685 None:intergenic
AAGCAGATGCTGAGAGGATT+GGG 0.337218 8:-52513790 MsG0880044990.01.T01:CDS
CTAGGGAAGAACTTGCAATT+AGG 0.346293 8:-52514380 MsG0880044990.01.T01:intron
GGTAAATATGGCAAAATCAT+TGG 0.353787 8:+52510190 None:intergenic
GTCTTGACCTTGACCTAAAA+AGG 0.356451 8:+52514449 None:intergenic
GAGAGTTAGGAGAGAAAGGT+AGG 0.359572 8:-52509939 MsG0880044990.01.T01:three_prime_UTR
AAAGGTAGGGAGGGGCTTTG+GGG 0.362395 8:-52509925 MsG0880044990.01.T01:three_prime_UTR
GTTTGAGAGTTAGGAGAGAA+AGG 0.378482 8:-52509943 MsG0880044990.01.T01:three_prime_UTR
ATATCAAGAAGACAATGATT+TGG 0.380534 8:+52514417 None:intergenic
ATGGTCCTCGTCGAAATATT+AGG 0.388314 8:-52514503 MsG0880044990.01.T01:CDS
TATCTGACATTATTTCATAT+GGG 0.399863 8:-52509541 MsG0880044990.01.T01:three_prime_UTR
ATTTCGACGAGGACCATGTT+TGG 0.400312 8:+52514509 None:intergenic
ATCACACATTCAGAGTTATA+AGG 0.407712 8:+52511348 None:intergenic
AAACGAGTCCTCGTCTGATC+TGG 0.413393 8:+52510050 None:intergenic
GGGAACTCAAAATGTATTGA+TGG 0.422568 8:+52509789 None:intergenic
TTGTAGCACTGTGGTAAATA+TGG 0.435349 8:+52510178 None:intergenic
TGGGTTGTTTCCTTTCGATC+AGG 0.445262 8:-52514611 MsG0880044990.01.T01:CDS
CTTTCGATCAGGACAACGTT+AGG 0.448519 8:-52514600 MsG0880044990.01.T01:CDS
GTAAATATGGCAAAATCATT+GGG 0.450525 8:+52510191 None:intergenic
AACAAAACTCAAGAGCTTCA+AGG 0.453667 8:+52510316 None:intergenic
TATAACTCTGAATGTGTGAT+TGG 0.454306 8:-52511345 MsG0880044990.01.T01:CDS
GTACTCCTGCTGCAAATGAC+CGG 0.458691 8:-52511320 MsG0880044990.01.T01:CDS
GAAGCAGATGCTGAGAGGAT+TGG 0.459586 8:-52513791 MsG0880044990.01.T01:CDS
GTGCAAGGTGCAAAAGATAT+AGG 0.464465 8:+52509433 None:intergenic
AAAATAAAATATGTCAAAGT+GGG 0.464616 8:+52510237 None:intergenic
TTCACCCGGTCATTTGCAGC+AGG 0.469515 8:+52511315 None:intergenic
ACGGTCTTGTCCCAGCGGAC+TGG 0.473797 8:+52511405 None:intergenic
AGAGTTAGGAGAGAAAGGTA+GGG 0.475719 8:-52509938 MsG0880044990.01.T01:three_prime_UTR
TAACCAGGCTTCCAGTCCGC+TGG 0.482831 8:-52511416 MsG0880044990.01.T01:intron
AAAAGAGTACACGCAAGAAC+AGG 0.484302 8:+52509572 None:intergenic
AAGGTAGGGAGGGGCTTTGG+GGG 0.487002 8:-52509924 MsG0880044990.01.T01:three_prime_UTR
AGCTTGAGTTCGAGAGGAAG+AGG 0.489751 8:-52510453 MsG0880044990.01.T01:CDS
ATCTGACATTATTTCATATG+GGG 0.493472 8:-52509540 MsG0880044990.01.T01:three_prime_UTR
GGCGGATCTACATGCTCTTG+AGG 0.494224 8:-52509501 MsG0880044990.01.T01:three_prime_UTR
GCGGATCTACATGCTCTTGA+GGG 0.500043 8:-52509500 MsG0880044990.01.T01:three_prime_UTR
TTAGGAGAGAAAGGTAGGGA+GGG 0.504415 8:-52509934 MsG0880044990.01.T01:three_prime_UTR
GAGTTCCCTCGTCACTAATG+AGG 0.510000 8:-52509774 MsG0880044990.01.T01:three_prime_UTR
AAATCATTGGGTTCCAAACA+AGG 0.515987 8:+52510203 None:intergenic
GGAACTCAAAATGTATTGAT+GGG 0.516356 8:+52509790 None:intergenic
GTTAGGAGAGAAAGGTAGGG+AGG 0.517143 8:-52509935 MsG0880044990.01.T01:three_prime_UTR
TATTAATGCTCTTCAATCTA+GGG 0.522635 8:-52514397 MsG0880044990.01.T01:CDS
TTTCTTTGTGAGAGGAGAAG+TGG 0.525804 8:+52509380 None:intergenic
ACAATTACCTTCCCAACCAC+AGG 0.530521 8:+52509877 None:intergenic
AGACAATGATTTGGATCAAG+TGG 0.531826 8:+52514426 None:intergenic
TTCTTGAAGTACGAGGTAGT+TGG 0.533051 8:+52514536 None:intergenic
TCTTATCTTTACTTTGTAGG+AGG 0.533264 8:-52510144 MsG0880044990.01.T01:three_prime_UTR
CAGTCAAAACAAACAAAAGA+TGG 0.540414 8:-52514688 MsG0880044990.01.T01:exon
TTGCAACTTCGCGGTTCTGG+TGG 0.543621 8:-52510430 MsG0880044990.01.T01:CDS
GAAGTTCAGTCGCATACAAA+GGG 0.545342 8:+52510080 None:intergenic
CTTCAAGAAGGTTCCAAACA+TGG 0.547671 8:-52514522 MsG0880044990.01.T01:CDS
ACGTTAGGTGATGAATTTGA+AGG 0.547826 8:-52514585 MsG0880044990.01.T01:CDS
TAGGAGAGAAAGGTAGGGAG+GGG 0.550287 8:-52509933 MsG0880044990.01.T01:three_prime_UTR
CGAGTCCTCGTCTGATCTGG+AGG 0.561765 8:+52510053 None:intergenic
CAACAACGGAGATGAGTTTG+CGG 0.565519 8:-52514634 MsG0880044990.01.T01:CDS
AACCAGGCTTCCAGTCCGCT+GGG 0.567736 8:-52511415 MsG0880044990.01.T01:intron
AAGAGAATGATATACAAGAA+TGG 0.568193 8:+52509637 None:intergenic
TCTGACATTATTTCATATGG+GGG 0.568531 8:-52509539 MsG0880044990.01.T01:three_prime_UTR
TACTCCTGCTGCAAATGACC+GGG 0.571626 8:-52511319 MsG0880044990.01.T01:CDS
TGAGAGGAGAAGTGGATCAG+AGG 0.575941 8:+52509388 None:intergenic
GAGTAAATAATATCACCAAA+AGG 0.576800 8:+52510276 None:intergenic
AGGAAGAGGTTGCAACTTCG+CGG 0.577772 8:-52510439 MsG0880044990.01.T01:CDS
ATGGCGATGACGATGGAAAG+TGG 0.583221 8:-52514669 MsG0880044990.01.T01:CDS
AACTACCTCGTACTTCAAGA+AGG 0.584328 8:-52514534 MsG0880044990.01.T01:CDS
CTAACGTTGTCCTGATCGAA+AGG 0.584661 8:+52514601 None:intergenic
TGAAGTTCAGTCGCATACAA+AGG 0.587328 8:+52510079 None:intergenic
AAATGACCGGGTGAAGAAAG+TGG 0.589657 8:-52511307 MsG0880044990.01.T01:intron
GAACTCAAAATGTATTGATG+GGG 0.591881 8:+52509791 None:intergenic
AACGGAGATGAGTTTGCGGT+GGG 0.594074 8:-52514630 MsG0880044990.01.T01:CDS
CAACGGAGATGAGTTTGCGG+TGG 0.594238 8:-52514631 MsG0880044990.01.T01:CDS
TGTTTACCACTTTCTTCACC+CGG 0.594575 8:+52511301 None:intergenic
CTAAGGCCTCATTAGTGACG+AGG 0.596911 8:+52509768 None:intergenic
GTCCTCGTCTGATCTGGAGG+AGG 0.600456 8:+52510056 None:intergenic
ACAAAAGATGGCGATGACGA+TGG 0.605340 8:-52514676 MsG0880044990.01.T01:exon
CTCATTCATCACAACTATGA+CGG 0.607600 8:+52511386 None:intergenic
AACTCTGAATGTGTGATTGG+TGG 0.608031 8:-52511342 MsG0880044990.01.T01:CDS
AGAGCATGTAGATCCGCCCC+TGG 0.615663 8:+52509506 None:intergenic
GTAGTTGGAATCACGATCAA+AGG 0.617773 8:+52514551 None:intergenic
GACAATGATTTGGATCAAGT+GGG 0.620371 8:+52514427 None:intergenic
GTAAAGATAAGATGAATGAG+TGG 0.631254 8:+52510155 None:intergenic
CACCTCCTCCAGATCAGACG+AGG 0.636315 8:-52510058 MsG0880044990.01.T01:three_prime_UTR
AACTCAAAATGTATTGATGG+GGG 0.636940 8:+52509792 None:intergenic
CTACATAAAACTAATAATGG+AGG 0.637742 8:+52509688 None:intergenic
TGGTTGAGAAAGAAACTCCA+AGG 0.644959 8:-52510376 MsG0880044990.01.T01:three_prime_UTR
AAATAAAATATGTCAAAGTG+GGG 0.649897 8:+52510238 None:intergenic
GGCAGCAGCAACAACAACAA+CGG 0.651119 8:-52514648 MsG0880044990.01.T01:CDS
AAGCTGAAGCAGATGCTGAG+AGG 0.660269 8:-52513796 MsG0880044990.01.T01:CDS
TAAGGCCTCATTAGTGACGA+GGG 0.667549 8:+52509769 None:intergenic
CTATGACGGTCTTGTCCCAG+CGG 0.667590 8:+52511400 None:intergenic
CGTCATAGTTGTGATGAATG+AGG 0.676789 8:-52511385 MsG0880044990.01.T01:CDS
AGCAGATGCTGAGAGGATTG+GGG 0.676816 8:-52513789 MsG0880044990.01.T01:CDS
GATGCTGAGAGGATTGGGGT+TGG 0.677325 8:-52513785 MsG0880044990.01.T01:CDS
GGGTGTGTTATAGCCAGGGG+CGG 0.690301 8:-52509519 MsG0880044990.01.T01:three_prime_UTR
TGGAACCTTCTTGAAGTACG+AGG 0.696402 8:+52514529 None:intergenic
AAAAGCCTAATATTTCGACG+AGG 0.729946 8:+52514498 None:intergenic
AATGAGTGGTTGTAGCACTG+TGG 0.778344 8:+52510169 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAAATAAAACATAAATTAAA+AGG + Chr8:52512549-52512568 None:intergenic 10.0%
!! TAGTTTCTAATTTAAATAAT+AGG - Chr8:52511644-52511663 MsG0880044990.01.T01:intron 10.0%
!! TTAATACAAAACAAATTTAT+AGG + Chr8:52512926-52512945 None:intergenic 10.0%
!!! CAATAAAATAAAGAATTTTT+CGG + Chr8:52511603-52511622 None:intergenic 10.0%
!!! CAATTTTAAATTTTTATTGA+TGG - Chr8:52509859-52509878 MsG0880044990.01.T01:three_prime_UTR 10.0%
!!! GTTATTAAATAGAATATTTT+TGG - Chr8:52510613-52510632 MsG0880044990.01.T01:intron 10.0%
!!! GTTTTATTTCTTTTAATAAA+TGG + Chr8:52514453-52514472 None:intergenic 10.0%
!!! TACAATTCTTTTTTTTTTTT+TGG + Chr8:52512980-52512999 None:intergenic 10.0%
!! AAAAATAAAATATGTCAAAG+TGG + Chr8:52513927-52513946 None:intergenic 15.0%
!! AAAATAAAATATGTCAAAGT+GGG + Chr8:52513926-52513945 None:intergenic 15.0%
!! AATAAAAAATTGTCACATAA+CGG + Chr8:52511287-52511306 None:intergenic 15.0%
!! ATAAAATGCAATAATATAGA+AGG + Chr8:52513107-52513126 None:intergenic 15.0%
!! ATAGATATTAAAAGATGAAA+TGG + Chr8:52510649-52510668 None:intergenic 15.0%
!! TAGATATTAAAAGATGAAAT+GGG + Chr8:52510648-52510667 None:intergenic 15.0%
!!! ATGATTATTTTGTTTAGATT+TGG - Chr8:52509992-52510011 MsG0880044990.01.T01:three_prime_UTR 15.0%
!!! ATTTAAAGTGATTTTTGTTT+TGG - Chr8:52510331-52510350 MsG0880044990.01.T01:three_prime_UTR 15.0%
!!! GTTAAGTGAATTTTAATTTT+TGG - Chr8:52511531-52511550 MsG0880044990.01.T01:intron 15.0%
!!! TTGTTGAACATTTTATTTTA+TGG - Chr8:52511487-52511506 MsG0880044990.01.T01:intron 15.0%
!!! TTTAAAGTGATTTTTGTTTT+GGG - Chr8:52510332-52510351 MsG0880044990.01.T01:three_prime_UTR 15.0%
!!! TTTTTATCTAAAACAAGTTT+TGG - Chr8:52511683-52511702 MsG0880044990.01.T01:intron 15.0%
!! AAAAAGAAAAACATAGGATT+CGG + Chr8:52510289-52510308 None:intergenic 20.0%
!! AAAGTTATTAAAACTCTCTA+AGG + Chr8:52514412-52514431 None:intergenic 20.0%
!! AAATAAAATATGTCAAAGTG+GGG + Chr8:52513925-52513944 None:intergenic 20.0%
!! AAATAATACAACTTATTGCT+CGG - Chr8:52513564-52513583 MsG0880044990.01.T01:intron 20.0%
!! AGAAAGTAAATTAGGAAAAA+GGG + Chr8:52510958-52510977 None:intergenic 20.0%
!! ATATAAAACAAATAGAAAGC+TGG + Chr8:52512638-52512657 None:intergenic 20.0%
!! ATGCTACATAAAACTAATAA+TGG + Chr8:52514478-52514497 None:intergenic 20.0%
!! ATTAAAATTCACTTAACTCT+AGG + Chr8:52511528-52511547 None:intergenic 20.0%
!! CATTGAAAAAAGAAAAACAT+AGG + Chr8:52510295-52510314 None:intergenic 20.0%
!! TAAAAAATGTTGTCTAATTG+CGG - Chr8:52510753-52510772 MsG0880044990.01.T01:intron 20.0%
!! TAAATAAAAGGAAGTAAACT+AGG + Chr8:52512141-52512160 None:intergenic 20.0%
!! TATCTACTAACTCATAAAAA+TGG - Chr8:52510547-52510566 MsG0880044990.01.T01:intron 20.0%
!! TATCTGACATTATTTCATAT+GGG - Chr8:52514619-52514638 MsG0880044990.01.T01:CDS 20.0%
!! TTAAAATTCACTTAACTCTA+GGG + Chr8:52511527-52511546 None:intergenic 20.0%
!! TTATCTGACATTATTTCATA+TGG - Chr8:52514618-52514637 MsG0880044990.01.T01:CDS 20.0%
!! TTTACTAAGTAACTTATCAT+GGG - Chr8:52512491-52512510 MsG0880044990.01.T01:intron 20.0%
!!! AAATAAAGAATTTTTCGGTA+CGG + Chr8:52511598-52511617 None:intergenic 20.0%
!!! AGTTTACTTCCTTTTATTTA+AGG - Chr8:52512141-52512160 MsG0880044990.01.T01:intron 20.0%
!!! TATCAAGTTTTATGGTAAAA+AGG + Chr8:52511066-52511085 None:intergenic 20.0%
!!! TTCATTATTTCTAAACCTTT+TGG - Chr8:52513869-52513888 MsG0880044990.01.T01:intron 20.0%
!!! TTTATTTCTAAAACCTTGTT+TGG - Chr8:52513944-52513963 MsG0880044990.01.T01:intron 20.0%
!!! TTTTACTAAATAGAGTATCT+TGG + Chr8:52510738-52510757 None:intergenic 20.0%
!!! TTTTACTAAGTAACTTATCA+TGG - Chr8:52512490-52512509 MsG0880044990.01.T01:intron 20.0%
! AAAAGTTATTACATCCATTG+AGG - Chr8:52513134-52513153 MsG0880044990.01.T01:intron 25.0%
! AAGAGAATGATATACAAGAA+TGG + Chr8:52514526-52514545 None:intergenic 25.0%
! AATATGTCCAAACAAAATGT+GGG - Chr8:52511160-52511179 MsG0880044990.01.T01:intron 25.0%
! AATTAGAAACTAATCCAATC+TGG + Chr8:52511636-52511655 None:intergenic 25.0%
! ACAAAAAACCTACAAAACAA+AGG + Chr8:52511471-52511490 None:intergenic 25.0%
! ACAAAATTTGCATCCTATAA+TGG - Chr8:52513764-52513783 MsG0880044990.01.T01:CDS 25.0%
! AGAACTGAAAAATGAAAACT+TGG - Chr8:52513063-52513082 MsG0880044990.01.T01:intron 25.0%
! ATAAAACTTGATACACACTT+GGG - Chr8:52511073-52511092 MsG0880044990.01.T01:intron 25.0%
! ATAAATAAGTCAATCCAAAC+AGG + Chr8:52513161-52513180 None:intergenic 25.0%
! ATATCAAGAAGACAATGATT+TGG + Chr8:52509746-52509765 None:intergenic 25.0%
! ATATTAATGCTCTTCAATCT+AGG - Chr8:52509762-52509781 MsG0880044990.01.T01:three_prime_UTR 25.0%
! ATCTGACATTATTTCATATG+GGG - Chr8:52514620-52514639 MsG0880044990.01.T01:CDS 25.0%
! ATTAGAAACTAATCCAATCT+GGG + Chr8:52511635-52511654 None:intergenic 25.0%
! CAGAAAGTAAATTAGGAAAA+AGG + Chr8:52510959-52510978 None:intergenic 25.0%
! CTACATAAAACTAATAATGG+AGG + Chr8:52514475-52514494 None:intergenic 25.0%
! GAAAGTAAATTAGGAAAAAG+GGG + Chr8:52510957-52510976 None:intergenic 25.0%
! GAACTGAAAAATGAAAACTT+GGG - Chr8:52513064-52513083 MsG0880044990.01.T01:intron 25.0%
! GAGTAAATAATATCACCAAA+AGG + Chr8:52513887-52513906 None:intergenic 25.0%
! GATAAGAGAGAAAACAATAT+AGG - Chr8:52510223-52510242 MsG0880044990.01.T01:three_prime_UTR 25.0%
! GTAAATATGGCAAAATCATT+GGG + Chr8:52513972-52513991 None:intergenic 25.0%
! TAAAAGACGAATTGATTGTA+TGG + Chr8:52511849-52511868 None:intergenic 25.0%
! TATACTTATCTATTGACACA+AGG - Chr8:52513178-52513197 MsG0880044990.01.T01:intron 25.0%
! TATCAATTGAGTAATGTGAA+GGG - Chr8:52512316-52512335 MsG0880044990.01.T01:intron 25.0%
! TATTAATGCTCTTCAATCTA+GGG - Chr8:52509763-52509782 MsG0880044990.01.T01:three_prime_UTR 25.0%
! TCATCTTATCTTTACTTTGT+AGG - Chr8:52514013-52514032 MsG0880044990.01.T01:intron 25.0%
! TTAGGAATTTGAGTAATTTG+TGG - Chr8:52513432-52513451 MsG0880044990.01.T01:intron 25.0%
! TTGATTAAGGAATAAAGAGA+TGG - Chr8:52509901-52509920 MsG0880044990.01.T01:three_prime_UTR 25.0%
!! AAATGCCTTTAAAAGTTTAC+CGG - Chr8:52511723-52511742 MsG0880044990.01.T01:intron 25.0%
!! AGTGTAAATTTTCAAAGTTC+AGG + Chr8:52514701-52514720 None:intergenic 25.0%
!! ATCAAAGATTTCACCTTTTT+AGG - Chr8:52509698-52509717 MsG0880044990.01.T01:three_prime_UTR 25.0%
!! ATTTTATTGTGATATAACCC+TGG - Chr8:52510514-52510533 MsG0880044990.01.T01:intron 25.0%
!! CTTTTTCCTAATTTACTTTC+TGG - Chr8:52510957-52510976 MsG0880044990.01.T01:intron 25.0%
!! GTAATTGACAACATTGTTTT+TGG + Chr8:52512389-52512408 None:intergenic 25.0%
!! GTACTATAAATAGAGTATCA+CGG + Chr8:52511946-52511965 None:intergenic 25.0%
!! GTGTAAATTTTCAAAGTTCA+GGG + Chr8:52514700-52514719 None:intergenic 25.0%
!! TAGGAATTTGAGTAATTTGT+GGG - Chr8:52513433-52513452 MsG0880044990.01.T01:intron 25.0%
!! TAGTTCAACTAGTTTGATTA+AGG - Chr8:52509888-52509907 MsG0880044990.01.T01:three_prime_UTR 25.0%
!! TCAATTTTCATAACCTATTC+TGG + Chr8:52513287-52513306 None:intergenic 25.0%
!!! ACTTTAGGGATTTCATTTTA+GGG - Chr8:52510998-52511017 MsG0880044990.01.T01:intron 25.0%
!!! AGTGTTTTTGAGAATAGTTT+AGG - Chr8:52511770-52511789 MsG0880044990.01.T01:intron 25.0%
!!! ATTTTTCAGTTCTCTTTTGA+AGG + Chr8:52513056-52513075 None:intergenic 25.0%
!!! GTGTTTTTGAGAATAGTTTA+GGG - Chr8:52511771-52511790 MsG0880044990.01.T01:intron 25.0%
!!! TAGTGTTGGTTATCATAATA+TGG - Chr8:52511426-52511445 MsG0880044990.01.T01:intron 25.0%
!!! TGTAGAGCTTTCATTTTTAA+GGG - Chr8:52512168-52512187 MsG0880044990.01.T01:intron 25.0%
!!! TTGTTTTATAGTTGAGAAGA+AGG - Chr8:52514150-52514169 MsG0880044990.01.T01:intron 25.0%
!!! TTTAGTCTTAAATGCAACTA+TGG - Chr8:52512900-52512919 MsG0880044990.01.T01:intron 25.0%
!!! TTTGGTTAATTTTGCTGTAT+GGG - Chr8:52511549-52511568 MsG0880044990.01.T01:intron 25.0%
!!! TTTTGGTTAATTTTGCTGTA+TGG - Chr8:52511548-52511567 MsG0880044990.01.T01:intron 25.0%
AACAAATCACAATGAATCTG+TGG + Chr8:52510259-52510278 None:intergenic 30.0%
AAGAATTGTATGAACATCAG+AGG - Chr8:52512990-52513009 MsG0880044990.01.T01:intron 30.0%
AAGGAAGTAAACTAGGAATA+AGG + Chr8:52512134-52512153 None:intergenic 30.0%
ACATTACTCAATTGATACAG+TGG + Chr8:52512313-52512332 None:intergenic 30.0%
AGAACAATGTTGTCAAATTG+CGG - Chr8:52510670-52510689 MsG0880044990.01.T01:intron 30.0%
AGAGATACTCATTACTTTAG+AGG - Chr8:52513491-52513510 MsG0880044990.01.T01:intron 30.0%
AGGAAGTAAACTAGGAATAA+GGG + Chr8:52512133-52512152 None:intergenic 30.0%
AGTAGATACTAATCTAATCC+AGG + Chr8:52510535-52510554 None:intergenic 30.0%
AGTATCTCTTCATACAATGA+AGG + Chr8:52513480-52513499 None:intergenic 30.0%
AGTTATGTTAGATGTCCTAA+TGG - Chr8:52511099-52511118 MsG0880044990.01.T01:intron 30.0%
AGTTCAAATAAGAGGATGTT+TGG + Chr8:52513402-52513421 None:intergenic 30.0%
ATATGTCCAAACAAAATGTG+GGG - Chr8:52511161-52511180 MsG0880044990.01.T01:intron 30.0%
ATCACACATTCAGAGTTATA+AGG + Chr8:52512815-52512834 None:intergenic 30.0%
ATGTTGTCAATTACAGATTG+CGG - Chr8:52512395-52512414 MsG0880044990.01.T01:intron 30.0%
ATTAAGGAATAAAGAGATGG+AGG - Chr8:52509904-52509923 MsG0880044990.01.T01:three_prime_UTR 30.0%
ATTGTTAAAGAGTCCCATAT+TGG - Chr8:52510015-52510034 MsG0880044990.01.T01:three_prime_UTR 30.0%
CAGTCAAAACAAACAAAAGA+TGG - Chr8:52509472-52509491 MsG0880044990.01.T01:three_prime_UTR 30.0%
CATAAAACTTGATACACACT+TGG - Chr8:52511072-52511091 MsG0880044990.01.T01:intron 30.0%
CTAATACAATCCCACAAAAT+CGG + Chr8:52510095-52510114 None:intergenic 30.0%
CTACAGTCACCTTAAATAAA+AGG + Chr8:52512153-52512172 None:intergenic 30.0%
CTGAACTTGTGTTTATAAGT+GGG - Chr8:52510050-52510069 MsG0880044990.01.T01:three_prime_UTR 30.0%
GAATATGTCCAAACAAAATG+TGG - Chr8:52511159-52511178 MsG0880044990.01.T01:intron 30.0%
GCTAGAAGTTTAGAGATTTA+TGG - Chr8:52510569-52510588 MsG0880044990.01.T01:intron 30.0%
GGTAAATATGGCAAAATCAT+TGG + Chr8:52513973-52513992 None:intergenic 30.0%
GTAAAGATAAGATGAATGAG+TGG + Chr8:52514008-52514027 None:intergenic 30.0%
GTAGATACTAATCTAATCCA+GGG + Chr8:52510534-52510553 None:intergenic 30.0%
GTATCAATTGAGTAATGTGA+AGG - Chr8:52512315-52512334 MsG0880044990.01.T01:intron 30.0%
GTATCTCTTCATACAATGAA+GGG + Chr8:52513479-52513498 None:intergenic 30.0%
GTTTCTTTCTCAACCATTAT+AGG + Chr8:52513780-52513799 None:intergenic 30.0%
TAACATCAAACCAAGTACTA+GGG + Chr8:52513665-52513684 None:intergenic 30.0%
TAATATGGATGCTAGAAAAC+TGG - Chr8:52511441-52511460 MsG0880044990.01.T01:intron 30.0%
TAGATAGTGTTGTCAAATAG+CGG + Chr8:52511368-52511387 None:intergenic 30.0%
TATAACTCTGAATGTGTGAT+TGG - Chr8:52512815-52512834 MsG0880044990.01.T01:intron 30.0%
TCTGACATTATTTCATATGG+GGG - Chr8:52514621-52514640 MsG0880044990.01.T01:CDS 30.0%
TCTTATCTTTACTTTGTAGG+AGG - Chr8:52514016-52514035 MsG0880044990.01.T01:intron 30.0%
TGAACTTGTGTTTATAAGTG+GGG - Chr8:52510051-52510070 MsG0880044990.01.T01:three_prime_UTR 30.0%
TGAAGGAATGATGAATCATA+AGG + Chr8:52513039-52513058 None:intergenic 30.0%
TGACAATGTCATCAGTTAAA+AGG + Chr8:52512722-52512741 None:intergenic 30.0%
TTAACATCAAACCAAGTACT+AGG + Chr8:52513666-52513685 None:intergenic 30.0%
TTAAGAGTTGTTTGAGAGTT+AGG - Chr8:52514208-52514227 MsG0880044990.01.T01:intron 30.0%
TTACAGATTGCGGAAAATAA+CGG - Chr8:52512405-52512424 MsG0880044990.01.T01:intron 30.0%
TTAGAAACTAATCCAATCTG+GGG + Chr8:52511634-52511653 None:intergenic 30.0%
TTCACATTATTCAGTCGATA+CGG + Chr8:52511142-52511161 None:intergenic 30.0%
! AAACATCCTCTTATTTGAAC+TGG - Chr8:52513401-52513420 MsG0880044990.01.T01:intron 30.0%
! AACATCCTCTTATTTGAACT+GGG - Chr8:52513402-52513421 MsG0880044990.01.T01:intron 30.0%
! AACTCAAAATGTATTGATGG+GGG + Chr8:52514371-52514390 None:intergenic 30.0%
! AATGCCTTTAAAAGTTTACC+GGG - Chr8:52511724-52511743 MsG0880044990.01.T01:intron 30.0%
! AGGTGCAAAATGAATTTTTC+AGG + Chr8:52514755-52514774 None:intergenic 30.0%
! ATTACTTTAGAGGACTCTAT+TGG - Chr8:52513501-52513520 MsG0880044990.01.T01:intron 30.0%
! CAAGTGTGTATCAAGTTTTA+TGG + Chr8:52511074-52511093 None:intergenic 30.0%
! CATTATTTAGGGTGACTTTA+GGG - Chr8:52510984-52511003 MsG0880044990.01.T01:intron 30.0%
! GAACTCAAAATGTATTGATG+GGG + Chr8:52514372-52514391 None:intergenic 30.0%
! GGAACTCAAAATGTATTGAT+GGG + Chr8:52514373-52514392 None:intergenic 30.0%
! GGTGCAAAATGAATTTTTCA+GGG + Chr8:52514754-52514773 None:intergenic 30.0%
! GTACAAAGTGTTAACAATAG+CGG - Chr8:52511962-52511981 MsG0880044990.01.T01:intron 30.0%
! TACTAAATAGAGTATCTTGG+CGG + Chr8:52510735-52510754 None:intergenic 30.0%
! TTTCTGGCATGCATTATTTA+GGG - Chr8:52510973-52510992 MsG0880044990.01.T01:intron 30.0%
!! ATGTGAGTTGATGAAGTTAA+AGG - Chr8:52514559-52514578 MsG0880044990.01.T01:CDS 30.0%
!! CTGTAGAGCTTTCATTTTTA+AGG - Chr8:52512167-52512186 MsG0880044990.01.T01:intron 30.0%
!! CTTTAGGGATTTCATTTTAG+GGG - Chr8:52510999-52511018 MsG0880044990.01.T01:intron 30.0%
!! GACTTTAGGGATTTCATTTT+AGG - Chr8:52510997-52511016 MsG0880044990.01.T01:intron 30.0%
!!! ATAGTTTTGTTCTTTTCGTC+CGG + Chr8:52509944-52509963 None:intergenic 30.0%
AAAAGCCTAATATTTCGACG+AGG + Chr8:52509665-52509684 None:intergenic 35.0%
AAATCATTGGGTTCCAAACA+AGG + Chr8:52513960-52513979 None:intergenic 35.0%
AACAAAACTCAAGAGCTTCA+AGG + Chr8:52513847-52513866 None:intergenic 35.0%
ACGTTAGGTGATGAATTTGA+AGG - Chr8:52509575-52509594 MsG0880044990.01.T01:three_prime_UTR 35.0%
AGAGCAATGTTGTCAAATAG+TGG - Chr8:52511878-52511897 MsG0880044990.01.T01:intron 35.0%
AGTAACTTATCATGGGACAA+TGG - Chr8:52512498-52512517 MsG0880044990.01.T01:intron 35.0%
AGTAGCACATATGTTCTATC+TGG - Chr8:52512096-52512115 MsG0880044990.01.T01:intron 35.0%
ATAGTAGCACTATAGCATAG+TGG - Chr8:52511987-52512006 MsG0880044990.01.T01:intron 35.0%
ATGTCCAAACAAAATGTGAG+GGG - Chr8:52512339-52512358 MsG0880044990.01.T01:intron 35.0%
ATGTTCCATTCACAGTCAAA+GGG + Chr8:52512204-52512223 None:intergenic 35.0%
ATTGTGATATAACCCCAGAT+TGG - Chr8:52511619-52511638 MsG0880044990.01.T01:intron 35.0%
CAAATGTGTAGTTTCCAATC+TGG - Chr8:52510927-52510946 MsG0880044990.01.T01:intron 35.0%
CAATTCCTCTTTGGTTGTAA+TGG - Chr8:52511026-52511045 MsG0880044990.01.T01:intron 35.0%
CATATGCAAGACATACAATC+AGG + Chr8:52511404-52511423 None:intergenic 35.0%
CCACTTATAAACACAAGTTC+AGG + Chr8:52510052-52510071 None:intergenic 35.0%
CCATCTTAGAAATCGTGATT+AGG + Chr8:52510119-52510138 None:intergenic 35.0%
CCTGAACTTGTGTTTATAAG+TGG - Chr8:52510049-52510068 MsG0880044990.01.T01:three_prime_UTR 35.0%
CTCATTCATCACAACTATGA+CGG + Chr8:52512777-52512796 None:intergenic 35.0%
GAAAAATGAAAACTTGGGCA+CGG - Chr8:52513069-52513088 MsG0880044990.01.T01:intron 35.0%
GAATTATTGCTGAACGTGAA+AGG + Chr8:52513638-52513657 None:intergenic 35.0%
GATGTCCAAACAAAATGTGA+GGG - Chr8:52512338-52512357 MsG0880044990.01.T01:intron 35.0%
GGGAACTCAAAATGTATTGA+TGG + Chr8:52514374-52514393 None:intergenic 35.0%
GTCCCATATTGGACAAAATA+TGG - Chr8:52510026-52510045 MsG0880044990.01.T01:three_prime_UTR 35.0%
TAAAACGTAAGTGCTTAACG+CGG - Chr8:52510437-52510456 MsG0880044990.01.T01:CDS 35.0%
TAATTCTTGTCCCTAGTACT+TGG - Chr8:52513652-52513671 MsG0880044990.01.T01:intron 35.0%
TACAGATTGCGGAAAATAAC+GGG - Chr8:52512406-52512425 MsG0880044990.01.T01:intron 35.0%
TACTCAATTGATACAGTGGT+GGG + Chr8:52512309-52512328 None:intergenic 35.0%
TAGTAGCACTATAGCATAGT+GGG - Chr8:52511988-52512007 MsG0880044990.01.T01:intron 35.0%
TATGTTCCATTCACAGTCAA+AGG + Chr8:52512205-52512224 None:intergenic 35.0%
TCCATTGATGAACTCGAAAA+CGG + Chr8:52510486-52510505 None:intergenic 35.0%
TGCATGCCAGAAAGTAAATT+AGG + Chr8:52510966-52510985 None:intergenic 35.0%
TGGGTTATAAGTTCAAACCT+CGG - Chr8:52513452-52513471 MsG0880044990.01.T01:intron 35.0%
TTAATTTCACGATGAACTCC+CGG + Chr8:52511745-52511764 None:intergenic 35.0%
TTACTCAATTGATACAGTGG+TGG + Chr8:52512310-52512329 None:intergenic 35.0%
TTGTAGCACTGTGGTAAATA+TGG + Chr8:52513985-52514004 None:intergenic 35.0%
TTGTGTCGCAGAAAAGAAAA+AGG + Chr8:52512586-52512605 None:intergenic 35.0%
! AACTCCCGGTAAACTTTTAA+AGG + Chr8:52511731-52511750 None:intergenic 35.0%
! AGACAATGATTTGGATCAAG+TGG + Chr8:52509737-52509756 None:intergenic 35.0%
! AGGCCATATTTTGTCCAATA+TGG + Chr8:52510032-52510051 None:intergenic 35.0%
! CCTAATCACGATTTCTAAGA+TGG - Chr8:52510116-52510135 MsG0880044990.01.T01:three_prime_UTR 35.0%
! CGATTTTGTGGGATTGTATT+AGG - Chr8:52510093-52510112 MsG0880044990.01.T01:three_prime_UTR 35.0%
! CTTTCTGGCATGCATTATTT+AGG - Chr8:52510972-52510991 MsG0880044990.01.T01:intron 35.0%
! GAAATTTTTCACCTGTGGTT+GGG - Chr8:52514272-52514291 MsG0880044990.01.T01:intron 35.0%
! GACAATGATTTGGATCAAGT+GGG + Chr8:52509736-52509755 None:intergenic 35.0%
! GCATTATTTAGGGTGACTTT+AGG - Chr8:52510983-52511002 MsG0880044990.01.T01:intron 35.0%
! GGCCATATTTTGTCCAATAT+GGG + Chr8:52510031-52510050 None:intergenic 35.0%
! TTTCTGCGACACAAACATTT+TGG - Chr8:52512592-52512611 MsG0880044990.01.T01:intron 35.0%
!! AGATGGATTAAGTGACTTTG+TGG - Chr8:52510133-52510152 MsG0880044990.01.T01:three_prime_UTR 35.0%
!! GGGATTTTGAAAGTTTTTGG+AGG + Chr8:52514351-52514370 None:intergenic 35.0%
!! TGGGGGATTTTGAAAGTTTT+TGG + Chr8:52514354-52514373 None:intergenic 35.0%
!!! CATGGGTACTTCTTTTTTGT+TGG - Chr8:52511184-52511203 MsG0880044990.01.T01:intron 35.0%
!!! GATTTCACCTTTTTAGGTCA+AGG - Chr8:52509704-52509723 MsG0880044990.01.T01:three_prime_UTR 35.0%
!!! TAGTTTTGTTCTTTTCGTCC+GGG + Chr8:52509943-52509962 None:intergenic 35.0%
AAACTGTTTGCGAGAGCTTA+TGG - Chr8:52513208-52513227 MsG0880044990.01.T01:intron 40.0%
AACTACCTCGTACTTCAAGA+AGG - Chr8:52509626-52509645 MsG0880044990.01.T01:three_prime_UTR 40.0%
AACTCTGAATGTGTGATTGG+TGG - Chr8:52512818-52512837 MsG0880044990.01.T01:intron 40.0%
AATTCCCCTTTGACTGTGAA+TGG - Chr8:52512196-52512215 MsG0880044990.01.T01:intron 40.0%
ACTAGCCCAGTTCAAATAAG+AGG + Chr8:52513410-52513429 None:intergenic 40.0%
AGAGTTAGGAGAGAAAGGTA+GGG - Chr8:52514222-52514241 MsG0880044990.01.T01:intron 40.0%
ATGGTCCTCGTCGAAATATT+AGG - Chr8:52509657-52509676 MsG0880044990.01.T01:three_prime_UTR 40.0%
ATGTTGTCCAATGCAGTTTG+TGG - Chr8:52511217-52511236 MsG0880044990.01.T01:intron 40.0%
ATTGCGGCTCTATATTGTAG+TGG - Chr8:52510686-52510705 MsG0880044990.01.T01:intron 40.0%
CAGCAATATATACGAGCTAG+TGG - Chr8:52512049-52512068 MsG0880044990.01.T01:intron 40.0%
CATGTAATTGCTTGTCCTTG+TGG - Chr8:52513013-52513032 MsG0880044990.01.T01:intron 40.0%
CATGTCCATTACAACCAAAG+AGG + Chr8:52511034-52511053 None:intergenic 40.0%
CGGTACGGATGAGAAAATAT+GGG + Chr8:52511583-52511602 None:intergenic 40.0%
CGTCATAGTTGTGATGAATG+AGG - Chr8:52512775-52512794 MsG0880044990.01.T01:intron 40.0%
CTAGGGAAGAACTTGCAATT+AGG - Chr8:52509780-52509799 MsG0880044990.01.T01:three_prime_UTR 40.0%
CTTCAAGAAGGTTCCAAACA+TGG - Chr8:52509638-52509657 MsG0880044990.01.T01:three_prime_UTR 40.0%
GAAAAAGGGGAAATCCAGAT+TGG + Chr8:52510944-52510963 None:intergenic 40.0%
GAAGTTCAGTCGCATACAAA+GGG + Chr8:52514083-52514102 None:intergenic 40.0%
GATGACATTGTCATGTAACC+AGG - Chr8:52512729-52512748 MsG0880044990.01.T01:intron 40.0%
GCAATGTTGTCAAATAGTGG+CGG - Chr8:52511881-52511900 MsG0880044990.01.T01:intron 40.0%
GGATGTCCAAACAAAATGTG+AGG - Chr8:52512337-52512356 MsG0880044990.01.T01:intron 40.0%
GGGTTGTTCAAATTCCACTA+TGG - Chr8:52512426-52512445 MsG0880044990.01.T01:intron 40.0%
GTAGTTGGAATCACGATCAA+AGG + Chr8:52509612-52509631 None:intergenic 40.0%
GTCTTGACCTTGACCTAAAA+AGG + Chr8:52509714-52509733 None:intergenic 40.0%
GTCTTGCATATGCTTAGTGT+TGG - Chr8:52511412-52511431 MsG0880044990.01.T01:CDS 40.0%
GTGCAAGGTGCAAAAGATAT+AGG + Chr8:52514730-52514749 None:intergenic 40.0%
GTTTGAGAGTTAGGAGAGAA+AGG - Chr8:52514217-52514236 MsG0880044990.01.T01:intron 40.0%
TCAAATTTCACTATGCTGCG+CGG - Chr8:52511255-52511274 MsG0880044990.01.T01:intron 40.0%
TCACAGATCGCAGAAAATAG+CGG + Chr8:52512025-52512044 None:intergenic 40.0%
TCGAACTCAAGCTGCAAAAA+AGG + Chr8:52513700-52513719 None:intergenic 40.0%
TCGGTACGGATGAGAAAATA+TGG + Chr8:52511584-52511603 None:intergenic 40.0%
TGAAGTTCAGTCGCATACAA+AGG + Chr8:52514084-52514103 None:intergenic 40.0%
TGATGAATCATAAGGCCACA+AGG + Chr8:52513031-52513050 None:intergenic 40.0%
TGGATTAAGTGACTTTGTGG+CGG - Chr8:52510136-52510155 MsG0880044990.01.T01:three_prime_UTR 40.0%
TGGTTGAGAAAGAAACTCCA+AGG - Chr8:52513784-52513803 MsG0880044990.01.T01:CDS 40.0%
TGTTCCATTCACAGTCAAAG+GGG + Chr8:52512203-52512222 None:intergenic 40.0%
TGTTTACCACTTTCTTCACC+CGG + Chr8:52512862-52512881 None:intergenic 40.0%
TTCCATAAGCTCTCCAGAAT+AGG - Chr8:52513271-52513290 MsG0880044990.01.T01:intron 40.0%
TTCGACAAGCTCTTATAGAG+TGG + Chr8:52510853-52510872 None:intergenic 40.0%
TTCTTGAAGTACGAGGTAGT+TGG + Chr8:52509627-52509646 None:intergenic 40.0%
TTGAGACTTGAGGAACCATT+AGG + Chr8:52511117-52511136 None:intergenic 40.0%
! AAAAGAGTACACGCAAGAAC+AGG + Chr8:52514591-52514610 None:intergenic 40.0%
! AACCTATTCTGGAGAGCTTA+TGG + Chr8:52513276-52513295 None:intergenic 40.0%
! ACTATAGCACTGAACCATAG+TGG + Chr8:52512443-52512462 None:intergenic 40.0%
! CTATTGGCTACGACATGTTT+CGG - Chr8:52513517-52513536 MsG0880044990.01.T01:intron 40.0%
! GGAAATTTTTCACCTGTGGT+TGG - Chr8:52514271-52514290 MsG0880044990.01.T01:intron 40.0%
! GGAGGATTTAAGTTCAAACC+CGG - Chr8:52509922-52509941 MsG0880044990.01.T01:three_prime_UTR 40.0%
! TTCATCGCGTTTTTCTACCT+TGG + Chr8:52513804-52513823 None:intergenic 40.0%
!! ACCTCACAAACCGATTTTGT+GGG - Chr8:52510082-52510101 MsG0880044990.01.T01:three_prime_UTR 40.0%
!! AGGGATTTCATTTTAGGGGA+AGG - Chr8:52511003-52511022 MsG0880044990.01.T01:intron 40.0%
!! TTTGAACTGGGCTAGTGATT+AGG - Chr8:52513414-52513433 MsG0880044990.01.T01:intron 40.0%
!!! CAGGGGAACTTCTTTTTTGT+TGG - Chr8:52512362-52512381 MsG0880044990.01.T01:intron 40.0%
!!! CATTTTGGTGCTTTTTGCCT+TGG - Chr8:52512607-52512626 MsG0880044990.01.T01:intron 40.0%
!!! CTGGTAGACCTTTGTTTTGT+AGG - Chr8:52511460-52511479 MsG0880044990.01.T01:intron 40.0%
!!! TCCGTTTTCGAGTTCATCAA+TGG - Chr8:52510482-52510501 MsG0880044990.01.T01:intron 40.0%
!!! TGAATTTTTCAGGGTGTGCA+AGG + Chr8:52514745-52514764 None:intergenic 40.0%
AAACAAAATGTGAGGGGCAG+GGG - Chr8:52512345-52512364 MsG0880044990.01.T01:intron 45.0%
AAATAGCGGCGCTACAACAT+GGG + Chr8:52511354-52511373 None:intergenic 45.0%
AAATGACCGGGTGAAGAAAG+TGG - Chr8:52512853-52512872 MsG0880044990.01.T01:intron 45.0%
AAGCAGATGCTGAGAGGATT+GGG - Chr8:52510370-52510389 MsG0880044990.01.T01:three_prime_UTR 45.0%
AATGAGTGGTTGTAGCACTG+TGG + Chr8:52513994-52514013 None:intergenic 45.0%
ACAAAAGATGGCGATGACGA+TGG - Chr8:52509484-52509503 MsG0880044990.01.T01:three_prime_UTR 45.0%
ACAATTACCTTCCCAACCAC+AGG + Chr8:52514286-52514305 None:intergenic 45.0%
ACACATTTGAGCTCTACGAC+AGG + Chr8:52510916-52510935 None:intergenic 45.0%
ACATCCATTGAGGTCCTGTT+TGG - Chr8:52513144-52513163 MsG0880044990.01.T01:intron 45.0%
ATAGAAAGCTGGCGATTCCA+AGG + Chr8:52512627-52512646 None:intergenic 45.0%
ATGCAGTTTGTGGACACTAG+TGG - Chr8:52511227-52511246 MsG0880044990.01.T01:intron 45.0%
ATTTCGACGAGGACCATGTT+TGG + Chr8:52509654-52509673 None:intergenic 45.0%
CAAACAAAATGTGAGGGGCA+GGG - Chr8:52512344-52512363 MsG0880044990.01.T01:intron 45.0%
CAACAACGGAGATGAGTTTG+CGG - Chr8:52509526-52509545 MsG0880044990.01.T01:three_prime_UTR 45.0%
CAATCCAAACAGGACCTCAA+TGG + Chr8:52513151-52513170 None:intergenic 45.0%
CCAAACAAAATGTGGGGCAT+GGG - Chr8:52511167-52511186 MsG0880044990.01.T01:intron 45.0%
CTAACGTTGTCCTGATCGAA+AGG + Chr8:52509562-52509581 None:intergenic 45.0%
CTAGTGTCCACAAACTGCAT+TGG + Chr8:52511227-52511246 None:intergenic 45.0%
CTTTCGATCAGGACAACGTT+AGG - Chr8:52509560-52509579 MsG0880044990.01.T01:three_prime_UTR 45.0%
GAGAGTTAGGAGAGAAAGGT+AGG - Chr8:52514221-52514240 MsG0880044990.01.T01:intron 45.0%
GATGAACTCGAAAACGGACA+TGG + Chr8:52510480-52510499 None:intergenic 45.0%
TAAGGCCTCATTAGTGACGA+GGG + Chr8:52514394-52514413 None:intergenic 45.0%
TCAAATCCCGCTATGCTACA+GGG + Chr8:52510796-52510815 None:intergenic 45.0%
TCCAAACAAAATGTGGGGCA+TGG - Chr8:52511166-52511185 MsG0880044990.01.T01:intron 45.0%
TGGAACCTTCTTGAAGTACG+AGG + Chr8:52509634-52509653 None:intergenic 45.0%
TTAGGAGAGAAAGGTAGGGA+GGG - Chr8:52514226-52514245 MsG0880044990.01.T01:intron 45.0%
TTCAAATCCCGCTATGCTAC+AGG + Chr8:52510797-52510816 None:intergenic 45.0%
TTCATACAATGAAGGGACCG+AGG + Chr8:52513472-52513491 None:intergenic 45.0%
! ACTTTGTGGCGGAAAAGTCA+TGG - Chr8:52510147-52510166 MsG0880044990.01.T01:three_prime_UTR 45.0%
! CGAGGGAAATTTTTCACCTG+TGG - Chr8:52514267-52514286 MsG0880044990.01.T01:intron 45.0%
! TGATACAGTGGTGGGACTTT+GGG + Chr8:52512301-52512320 None:intergenic 45.0%
! TGGGTTGTTTCCTTTCGATC+AGG - Chr8:52509549-52509568 MsG0880044990.01.T01:three_prime_UTR 45.0%
! TTGATACAGTGGTGGGACTT+TGG + Chr8:52512302-52512321 None:intergenic 45.0%
! TTTTGCAGCTTGAGTTCGAG+AGG - Chr8:52513701-52513720 MsG0880044990.01.T01:intron 45.0%
! TTTTTCACCTGTGGTTGGGA+AGG - Chr8:52514276-52514295 MsG0880044990.01.T01:intron 45.0%
!! CAAAATCGGTTTGTGAGGTG+AGG + Chr8:52510081-52510100 None:intergenic 45.0%
!! CACCTCACAAACCGATTTTG+TGG - Chr8:52510081-52510100 MsG0880044990.01.T01:three_prime_UTR 45.0%
!! TCCCACAAAATCGGTTTGTG+AGG + Chr8:52510086-52510105 None:intergenic 45.0%
!!! AATTTTAAATTTTTATTGAT+GGG - Chr8:52509860-52509879 MsG0880044990.01.T01:three_prime_UTR 5.0%
!!! TACAAAATTAATTTTTTTAA+TGG + Chr8:52509969-52509988 None:intergenic 5.0%
!!! TATTTTTTTATAATAAAACA+TGG - Chr8:52512233-52512252 MsG0880044990.01.T01:intron 5.0%
!!! TTTTTAAAAAAAAAACAAAA+GGG + Chr8:52513604-52513623 None:intergenic 5.0%
!!! TTTTTTAAAAAAAAAACAAA+AGG + Chr8:52513605-52513624 None:intergenic 5.0%
AAACGAGTCCTCGTCTGATC+TGG + Chr8:52514113-52514132 None:intergenic 50.0%
AACGGAGATGAGTTTGCGGT+GGG - Chr8:52509530-52509549 MsG0880044990.01.T01:three_prime_UTR 50.0%
AAGCTGAAGCAGATGCTGAG+AGG - Chr8:52510364-52510383 MsG0880044990.01.T01:three_prime_UTR 50.0%
AATAGCGGCGCTACAACATG+GGG + Chr8:52511353-52511372 None:intergenic 50.0%
ACTCTAGCCCTGTAGCATAG+CGG - Chr8:52510786-52510805 MsG0880044990.01.T01:intron 50.0%
AGCAGATGCTGAGAGGATTG+GGG - Chr8:52510371-52510390 MsG0880044990.01.T01:three_prime_UTR 50.0%
AGCTTGAGTTCGAGAGGAAG+AGG - Chr8:52513707-52513726 MsG0880044990.01.T01:intron 50.0%
AGGAAGAGGTTGCAACTTCG+CGG - Chr8:52513721-52513740 MsG0880044990.01.T01:intron 50.0%
AGGGGAAGGCAATTCCTCTT+TGG - Chr8:52511017-52511036 MsG0880044990.01.T01:intron 50.0%
ATGGCGATGACGATGGAAAG+TGG - Chr8:52509491-52509510 MsG0880044990.01.T01:three_prime_UTR 50.0%
CAAATAGCGGCGCTACAACA+TGG + Chr8:52511355-52511374 None:intergenic 50.0%
CCAAACAAAATGTGAGGGGC+AGG - Chr8:52512343-52512362 MsG0880044990.01.T01:intron 50.0%
CTAAGGCCTCATTAGTGACG+AGG + Chr8:52514395-52514414 None:intergenic 50.0%
GAAGCAGATGCTGAGAGGAT+TGG - Chr8:52510369-52510388 MsG0880044990.01.T01:three_prime_UTR 50.0%
GAGTTCCCTCGTCACTAATG+AGG - Chr8:52514386-52514405 MsG0880044990.01.T01:CDS 50.0%
GCGGATCTACATGCTCTTGA+GGG - Chr8:52514660-52514679 MsG0880044990.01.T01:CDS 50.0%
GGCAGCAGCAACAACAACAA+CGG - Chr8:52509512-52509531 MsG0880044990.01.T01:three_prime_UTR 50.0%
GTACTCCTGCTGCAAATGAC+CGG - Chr8:52512840-52512859 MsG0880044990.01.T01:intron 50.0%
GTTAGGAGAGAAAGGTAGGG+AGG - Chr8:52514225-52514244 MsG0880044990.01.T01:intron 50.0%
TACTCCTGCTGCAAATGACC+GGG - Chr8:52512841-52512860 MsG0880044990.01.T01:intron 50.0%
TAGGAGAGAAAGGTAGGGAG+GGG - Chr8:52514227-52514246 MsG0880044990.01.T01:intron 50.0%
! ATGGGGGTGTGTTATAGCCA+GGG - Chr8:52514637-52514656 MsG0880044990.01.T01:CDS 50.0%
! CCCATGCCCCACATTTTGTT+TGG + Chr8:52511170-52511189 None:intergenic 50.0%
! CCTGCCCCTCACATTTTGTT+TGG + Chr8:52512346-52512365 None:intergenic 50.0%
! CGATACGGTGTTGAGACTTG+AGG + Chr8:52511127-52511146 None:intergenic 50.0%
! TATGGGGGTGTGTTATAGCC+AGG - Chr8:52514636-52514655 MsG0880044990.01.T01:CDS 50.0%
AAAGGTAGGGAGGGGCTTTG+GGG - Chr8:52514235-52514254 MsG0880044990.01.T01:intron 55.0%
AGAAAGGTAGGGAGGGGCTT+TGG - Chr8:52514233-52514252 MsG0880044990.01.T01:intron 55.0%
AGGTTGCAACTTCGCGGTTC+TGG - Chr8:52513727-52513746 MsG0880044990.01.T01:intron 55.0%
ATAGCGGCGCTACAACATGG+GGG + Chr8:52511352-52511371 None:intergenic 55.0%
CAACGGAGATGAGTTTGCGG+TGG - Chr8:52509529-52509548 MsG0880044990.01.T01:three_prime_UTR 55.0%
CTCTAGCCCTGTAGCATAGC+GGG - Chr8:52510787-52510806 MsG0880044990.01.T01:intron 55.0%
GAAAGGTAGGGAGGGGCTTT+GGG - Chr8:52514234-52514253 MsG0880044990.01.T01:intron 55.0%
GATGCTGAGAGGATTGGGGT+TGG - Chr8:52510375-52510394 MsG0880044990.01.T01:three_prime_UTR 55.0%
GGCGGATCTACATGCTCTTG+AGG - Chr8:52514659-52514678 MsG0880044990.01.T01:CDS 55.0%
TTCACCCGGTCATTTGCAGC+AGG + Chr8:52512848-52512867 None:intergenic 55.0%
! CTATGACGGTCTTGTCCCAG+CGG + Chr8:52512763-52512782 None:intergenic 55.0%
! CTTTGGGGGAAGGAAAGCGA+GGG - Chr8:52514250-52514269 MsG0880044990.01.T01:intron 55.0%
! GGTGGGACTTTGGGAACACT+TGG + Chr8:52512292-52512311 None:intergenic 55.0%
! TGGGGGTGTGTTATAGCCAG+GGG - Chr8:52514638-52514657 MsG0880044990.01.T01:CDS 55.0%
! TTGCAACTTCGCGGTTCTGG+TGG - Chr8:52513730-52513749 MsG0880044990.01.T01:intron 55.0%
AACCAGGCTTCCAGTCCGCT+GGG - Chr8:52512745-52512764 MsG0880044990.01.T01:intron 60.0%
AGAGCATGTAGATCCGCCCC+TGG + Chr8:52514657-52514676 None:intergenic 60.0%
CACCTCCTCCAGATCAGACG+AGG - Chr8:52514102-52514121 MsG0880044990.01.T01:intron 60.0%
CGAGTCCTCGTCTGATCTGG+AGG + Chr8:52514110-52514129 None:intergenic 60.0%
GGGTGTGTTATAGCCAGGGG+CGG - Chr8:52514641-52514660 MsG0880044990.01.T01:CDS 60.0%
GTCCTCGTCTGATCTGGAGG+AGG + Chr8:52514107-52514126 None:intergenic 60.0%
TAACCAGGCTTCCAGTCCGC+TGG - Chr8:52512744-52512763 MsG0880044990.01.T01:intron 60.0%
! AAGGTAGGGAGGGGCTTTGG+GGG - Chr8:52514236-52514255 MsG0880044990.01.T01:intron 60.0%
!! GCTTTGGGGGAAGGAAAGCG+AGG - Chr8:52514249-52514268 MsG0880044990.01.T01:intron 60.0%
! ACGGTCTTGTCCCAGCGGAC+TGG + Chr8:52512758-52512777 None:intergenic 65.0%
!! TAGGGAGGGGCTTTGGGGGA+AGG - Chr8:52514240-52514259 MsG0880044990.01.T01:intron 65.0%
!! GTCCCAGCGGACTGGAAGCC+TGG + Chr8:52512750-52512769 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr8 gene 52509389 52514793 52509389 ID=MsG0880044990.01;Name=MsG0880044990.01
Chr8 mRNA 52509389 52514793 52509389 ID=MsG0880044990.01.T01;Parent=MsG0880044990.01;Name=MsG0880044990.01.T01;_AED=0.35;_eAED=0.35;_QI=102|1|1|1|1|1|4|1034|188
Chr8 exon 52509389 52510473 52509389 ID=MsG0880044990.01.T01:exon:22508;Parent=MsG0880044990.01.T01
Chr8 exon 52511308 52511431 52511308 ID=MsG0880044990.01.T01:exon:22507;Parent=MsG0880044990.01.T01
Chr8 exon 52513740 52513820 52513740 ID=MsG0880044990.01.T01:exon:22506;Parent=MsG0880044990.01.T01
Chr8 exon 52514381 52514793 52514381 ID=MsG0880044990.01.T01:exon:22505;Parent=MsG0880044990.01.T01
Chr8 five_prime_UTR 52514692 52514793 52514692 ID=MsG0880044990.01.T01:five_prime_utr;Parent=MsG0880044990.01.T01
Chr8 CDS 52514381 52514691 52514381 ID=MsG0880044990.01.T01:cds;Parent=MsG0880044990.01.T01
Chr8 CDS 52513740 52513820 52513740 ID=MsG0880044990.01.T01:cds;Parent=MsG0880044990.01.T01
Chr8 CDS 52511308 52511431 52511308 ID=MsG0880044990.01.T01:cds;Parent=MsG0880044990.01.T01
Chr8 CDS 52510423 52510473 52510423 ID=MsG0880044990.01.T01:cds;Parent=MsG0880044990.01.T01
Chr8 three_prime_UTR 52509389 52510422 52509389 ID=MsG0880044990.01.T01:three_prime_utr;Parent=MsG0880044990.01.T01
Gene Sequence

>MsG0880044990.01.T01

ATGGCGATGACGATGGAAAGTGGCAGCAGCAACAACAACAACGGAGATGAGTTTGCGGTGGGTTGTTTCCTTTCGATCAGGACAACGTTAGGTGATGAATTTGAAGGTCAAGTTGTTACCTTTGATCGTGATTCCAACTACCTCGTACTTCAAGAAGGTTCCAAACATGGTCCTCGTCGAAATATTAGGCTTTTGAAAGCTGATTATATCAAAGATTTCACCTTTTTAGGTCAAGGTCAAGACCCACTTGATCCAAATCATTGTCTTCTTGATATTAATGCTCTTCAATCTAGGGAAGAACTTGCAATTAGACAAGCTGAAGCAGATGCTGAGAGGATTGGGGTTGGTGTTACAAGTGAAGCACAGAACATCTTTGATGCATTATCTAAAACGCTTCCAGTCCGCTGGGACAAGACCGTCATAGTTGTGATGAATGAGGTGCGCGTCAGCAGTCCTTATAACTCTGAATGTGTGATTGGTGGTACTCCTGCTGCAAATGACCGGGTGAAGAAAGTGCTTGAGTTCGAGAGGAAGAGGTTGCAACTTCGCGGTTCTGGTGGTCAATAG

Protein sequence

>MsG0880044990.01.T01

MAMTMESGSSNNNNGDEFAVGCFLSIRTTLGDEFEGQVVTFDRDSNYLVLQEGSKHGPRRNIRLLKADYIKDFTFLGQGQDPLDPNHCLLDINALQSREELAIRQAEADAERIGVGVTSEAQNIFDALSKTLPVRWDKTVIVVMNEVRVSSPYNSECVIGGTPAANDRVKKVLEFERKRLQLRGSGGQ*