AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580026225.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580026225.01.T01 MTR_5g042160 97.380 229 6 0 1 229 1 229 3.50e-160 442
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580026225.01.T01 AT3G52220 64.384 219 70 5 1 213 1 217 1.02e-90 267

Find 11 sgRNAs with CRISPR-Local

Find 332 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGAACCCCTTTAGTTCTTGT+TGG 0.362773 5:-32713112 MsG0580026225.01.T01:exon
CGAGTTGGATGATACATGTT+TGG 0.404504 5:+32713027 None:intergenic
TTCTTCCAACAAGAACTAAA+GGG 0.411466 5:+32713107 None:intergenic
GTTCTTCCAACAAGAACTAA+AGG 0.477212 5:+32713106 None:intergenic
CCAACTCGAGGTGGCGTCCG+TGG 0.525837 5:-32713012 MsG0580026225.01.T01:exon
CCACGGACGCCACCTCGAGT+TGG 0.580213 5:+32713012 None:intergenic
ACTCGAGGTGGCGTCCGTGG+CGG 0.620619 5:-32713009 MsG0580026225.01.T01:exon
TCTTCCAACAAGAACTAAAG+GGG 0.624644 5:+32713108 None:intergenic
ACTTACGATCTCGACCGCCA+CGG 0.670052 5:+32712995 None:intergenic
ATGTATCATCCAACTCGAGG+TGG 0.688754 5:-32713021 MsG0580026225.01.T01:exon
AACATGTATCATCCAACTCG+AGG 0.703661 5:-32713024 MsG0580026225.01.T01:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACATTAACAAAATAAATAA+AGG + Chr5:32708457-32708476 None:intergenic 10.0%
!!! ATTTATTTCCTTATTTAATT+AGG - Chr5:32710837-32710856 MsG0580026225.01.T01:intron 10.0%
!!! TAAGAAAATTTAATTTTAAG+AGG + Chr5:32710794-32710813 None:intergenic 10.0%
!!! TTTCTAAATAATTTGATTTT+CGG + Chr5:32708130-32708149 None:intergenic 10.0%
!! AAAAATAAAACAAATGAAAC+AGG + Chr5:32710407-32710426 None:intergenic 15.0%
!! AATTTGTGAAATTTGAAAAA+GGG + Chr5:32708271-32708290 None:intergenic 15.0%
!! AGGATATCATATAAATTATT+TGG - Chr5:32710427-32710446 MsG0580026225.01.T01:intron 15.0%
!! ATAAAAAGACAATTTAAAGA+TGG + Chr5:32710033-32710052 None:intergenic 15.0%
!! CAATTATTTAATATAGAAGT+TGG - Chr5:32712066-32712085 MsG0580026225.01.T01:intron 15.0%
!! TGAATTAAAAGGTTTAAATT+TGG + Chr5:32709585-32709604 None:intergenic 15.0%
!!! AAAACTGTTATTTCTATTAA+AGG + Chr5:32711660-32711679 None:intergenic 15.0%
!!! ATAAATCTTTTAAAAGAATC+AGG + Chr5:32711113-32711132 None:intergenic 15.0%
!!! GTTTCATTTGTTTTATTTTT+AGG - Chr5:32710407-32710426 MsG0580026225.01.T01:intron 15.0%
!!! GTTTTGTATTGATATAAATA+AGG - Chr5:32710867-32710886 MsG0580026225.01.T01:intron 15.0%
!!! TTATATTTAGATTTTTCTCA+TGG - Chr5:32711082-32711101 MsG0580026225.01.T01:CDS 15.0%
!!! TTATATTTAGGTTTTTTTCA+TGG - Chr5:32710521-32710540 MsG0580026225.01.T01:intron 15.0%
!!! TTTTTCAGAAACAAAATTTT+AGG - Chr5:32711511-32711530 MsG0580026225.01.T01:intron 15.0%
!! AAAATTCATGTTTATCAAGA+CGG + Chr5:32710220-32710239 None:intergenic 20.0%
!! AATAAGTTACAATAATAGCA+CGG + Chr5:32712330-32712349 None:intergenic 20.0%
!! ACTATACATAAGAATTAAGA+TGG + Chr5:32708306-32708325 None:intergenic 20.0%
!! AGAAGAGATAAAAAGAATTA+AGG - Chr5:32710124-32710143 MsG0580026225.01.T01:intron 20.0%
!! AGTAAATTGGTTGTTTAAAT+AGG - Chr5:32709482-32709501 MsG0580026225.01.T01:intron 20.0%
!! ATAAGGTAAGGTAAAATAAA+AGG + Chr5:32708606-32708625 None:intergenic 20.0%
!! ATACAAAGAGAAGATAAAAA+CGG + Chr5:32712907-32712926 None:intergenic 20.0%
!! CAAATCATAAATAAACAAAG+TGG + Chr5:32711460-32711479 None:intergenic 20.0%
!! CATCAGTTTCTTAAAATTAT+AGG - Chr5:32708906-32708925 MsG0580026225.01.T01:intron 20.0%
!! CATTGAATAACTAATGTATT+TGG + Chr5:32709177-32709196 None:intergenic 20.0%
!! CTCTAAATCCTAATTAAATA+AGG + Chr5:32710848-32710867 None:intergenic 20.0%
!! GAATTTGTGAAATTTGAAAA+AGG + Chr5:32708272-32708291 None:intergenic 20.0%
!! GATATTAGATTTCAATTTGA+TGG - Chr5:32709504-32709523 MsG0580026225.01.T01:intron 20.0%
!! TAAAATTTAAGAAGCTAGAA+AGG - Chr5:32709870-32709889 MsG0580026225.01.T01:intron 20.0%
!! TAAATAGCATAAGGAAATTT+CGG + Chr5:32709327-32709346 None:intergenic 20.0%
!! TATCTAAACTTACATTACAT+TGG + Chr5:32709832-32709851 None:intergenic 20.0%
!! TCTTCAAATTAAGGTTAATT+GGG + Chr5:32709002-32709021 None:intergenic 20.0%
!! TTCATGGAAATTATTGTATT+TGG - Chr5:32709138-32709157 MsG0580026225.01.T01:intron 20.0%
!! TTCGCCATATAATAAATAAA+GGG + Chr5:32711707-32711726 None:intergenic 20.0%
!! TTCTCTTTGTATTTATAGTT+AGG - Chr5:32712915-32712934 MsG0580026225.01.T01:intron 20.0%
!! TTGAAAAAAAAAGCTGATTA+GGG + Chr5:32711549-32711568 None:intergenic 20.0%
!! TTTCGCCATATAATAAATAA+AGG + Chr5:32711708-32711727 None:intergenic 20.0%
!!! AAAACAACTTTTTAGATTCA+TGG - Chr5:32709122-32709141 MsG0580026225.01.T01:intron 20.0%
!!! AAATTGTCTTTTTATTCAAC+AGG - Chr5:32710038-32710057 MsG0580026225.01.T01:intron 20.0%
!!! AATAAAGCTCTAAAAATCAT+TGG + Chr5:32710560-32710579 None:intergenic 20.0%
!!! AATTGTCTTTTTATTCAACA+GGG - Chr5:32710039-32710058 MsG0580026225.01.T01:intron 20.0%
!!! CACTTTGTTTATTTATGATT+TGG - Chr5:32711458-32711477 MsG0580026225.01.T01:intron 20.0%
!!! GAGTTCTAAAATTGTAAATA+TGG + Chr5:32710945-32710964 None:intergenic 20.0%
!!! TATAAGCATAAGTTATTTTG+TGG + Chr5:32708376-32708395 None:intergenic 20.0%
!!! TATTGTTTATAGTCTTGTAT+AGG - Chr5:32709377-32709396 MsG0580026225.01.T01:intron 20.0%
!!! TTCTTATTTCTTTGTTATGA+TGG - Chr5:32710808-32710827 MsG0580026225.01.T01:intron 20.0%
! AAAATCTTGAATAAGCTGTT+AGG + Chr5:32710640-32710659 None:intergenic 25.0%
! AAACACAGAGAGAATTATAT+AGG - Chr5:32708530-32708549 MsG0580026225.01.T01:exon 25.0%
! AAAGTAGAAAAAAGAGAAGA+CGG - Chr5:32712485-32712504 MsG0580026225.01.T01:intron 25.0%
! AATATCCAGATAAGTGATAA+CGG + Chr5:32712770-32712789 None:intergenic 25.0%
! AATTAAGATGGAATTGAAGA+AGG + Chr5:32708294-32708313 None:intergenic 25.0%
! AATTGTAATCATGCAATTCT+TGG + Chr5:32710677-32710696 None:intergenic 25.0%
! ACGTATGAATTAAAGGAATA+AGG + Chr5:32708623-32708642 None:intergenic 25.0%
! AGAGTAGATATCCAAAAAAT+GGG + Chr5:32711343-32711362 None:intergenic 25.0%
! AGTAAAAGCTTAGAAATTAC+AGG + Chr5:32711424-32711443 None:intergenic 25.0%
! ATAAACATTAGACTGTTGTT+TGG - Chr5:32709985-32710004 MsG0580026225.01.T01:intron 25.0%
! ATAGCTATTTGATTGACAAT+AGG - Chr5:32708812-32708831 MsG0580026225.01.T01:CDS 25.0%
! ATATAACTTTCCTATACCTA+AGG + Chr5:32711946-32711965 None:intergenic 25.0%
! ATTCAATCAAAACTGTTGAT+CGG - Chr5:32709446-32709465 MsG0580026225.01.T01:intron 25.0%
! CTTCAAATTAAGGTTAATTG+GGG + Chr5:32709001-32709020 None:intergenic 25.0%
! CTTGAAAAAAAAAGCTGATT+AGG + Chr5:32711550-32711569 None:intergenic 25.0%
! GAAGAAAAGTAAATAGCATA+AGG + Chr5:32709336-32709355 None:intergenic 25.0%
! GAGTCTGATGTATTATATTT+AGG - Chr5:32710509-32710528 MsG0580026225.01.T01:intron 25.0%
! GATAAAAAGAATTAAGGAAG+AGG - Chr5:32710130-32710149 MsG0580026225.01.T01:intron 25.0%
! GTCTTCAAATTAAGGTTAAT+TGG + Chr5:32709003-32709022 None:intergenic 25.0%
! TAAACTTACATTACATTGGA+TGG + Chr5:32709828-32709847 None:intergenic 25.0%
! TAACATATGAATGCTTAGTT+TGG - Chr5:32712042-32712061 MsG0580026225.01.T01:intron 25.0%
! TAGAGTAGATATCCAAAAAA+TGG + Chr5:32711344-32711363 None:intergenic 25.0%
! TCTTAAAATTATAGGCTCTT+GGG - Chr5:32708914-32708933 MsG0580026225.01.T01:intron 25.0%
! TGAATTAAAGGAATAAGGTA+AGG + Chr5:32708618-32708637 None:intergenic 25.0%
! TTCTTAAAATTATAGGCTCT+TGG - Chr5:32708913-32708932 MsG0580026225.01.T01:intron 25.0%
! TTGGAAAATTGAAATTGAGA+TGG + Chr5:32708234-32708253 None:intergenic 25.0%
!! AATGTCATTTCATTTCACAT+TGG + Chr5:32712688-32712707 None:intergenic 25.0%
!! GAAATAACAGTTTTTGTAGA+AGG - Chr5:32711666-32711685 MsG0580026225.01.T01:intron 25.0%
!! TAGTTTAATTTCGTAAGCAA+AGG + Chr5:32712273-32712292 None:intergenic 25.0%
!! TTTTTGCTTATAAATGTGAC+CGG + Chr5:32709105-32709124 None:intergenic 25.0%
!!! AGCAAATTCTTTTAGCTTAT+AGG - Chr5:32710584-32710603 MsG0580026225.01.T01:intron 25.0%
!!! CTAGTTTCATGACTTATTTT+CGG - Chr5:32712714-32712733 MsG0580026225.01.T01:intron 25.0%
!!! CTATTTACTTTTCTTCAACA+TGG - Chr5:32709340-32709359 MsG0580026225.01.T01:intron 25.0%
!!! CTTTTAATTCAAAGCTCATA+GGG - Chr5:32709594-32709613 MsG0580026225.01.T01:intron 25.0%
!!! TAAGTTATTTTGTGGAAATC+AGG + Chr5:32708368-32708387 None:intergenic 25.0%
!!! TCATTTTGGTTTTATGGTTT+AGG - Chr5:32709700-32709719 MsG0580026225.01.T01:intron 25.0%
!!! TGTTAGGTCTTTTATTTACT+GGG + Chr5:32710624-32710643 None:intergenic 25.0%
!!! TTCTTATTGACCTTTTTTCA+GGG + Chr5:32713021-32713040 None:intergenic 25.0%
!!! TTTTAATTCAAAGCTCATAG+GGG - Chr5:32709595-32709614 MsG0580026225.01.T01:intron 25.0%
!!! TTTTCGTCATTTTGGTTTTA+TGG - Chr5:32709694-32709713 MsG0580026225.01.T01:intron 25.0%
AAAAAGAATTAAGGAAGAGG+AGG - Chr5:32710133-32710152 MsG0580026225.01.T01:intron 30.0%
AAACACACTGTTGAAGTTTA+GGG + Chr5:32711001-32711020 None:intergenic 30.0%
AAAGATTGAAGATGAATCTG+AGG - Chr5:32712459-32712478 MsG0580026225.01.T01:intron 30.0%
AAAGTCCCAAAATGAAGAAA+TGG - Chr5:32710091-32710110 MsG0580026225.01.T01:intron 30.0%
AACACTGAAACTACTTAACA+TGG - Chr5:32712005-32712024 MsG0580026225.01.T01:intron 30.0%
AAGTAGAAAAAAGAGAAGAC+GGG - Chr5:32712486-32712505 MsG0580026225.01.T01:intron 30.0%
AATAAGAAGATAGCTTCTGA+TGG - Chr5:32713033-32713052 MsG0580026225.01.T01:exon 30.0%
ACACTGAAACTACTTAACAT+GGG - Chr5:32712006-32712025 MsG0580026225.01.T01:intron 30.0%
ACATCTATTATTTGGAAGAC+TGG - Chr5:32711743-32711762 MsG0580026225.01.T01:intron 30.0%
ACCACATAATAATGCCAAAA+TGG + Chr5:32712800-32712819 None:intergenic 30.0%
ACTTATTTGTGCATCTTTGA+AGG + Chr5:32710728-32710747 None:intergenic 30.0%
AGTCTTCCAAATAATAGATG+TGG + Chr5:32711744-32711763 None:intergenic 30.0%
ATGTATTTGGTCTACAAATG+TGG + Chr5:32709164-32709183 None:intergenic 30.0%
ATTTACCGTTATCACTTATC+TGG - Chr5:32712762-32712781 MsG0580026225.01.T01:intron 30.0%
CCAAACATATACAATGCAAA+AGG + Chr5:32709261-32709280 None:intergenic 30.0%
CTTAAAATTATAGGCTCTTG+GGG - Chr5:32708915-32708934 MsG0580026225.01.T01:intron 30.0%
GATTCATCTTCAATCTTTCT+TGG + Chr5:32712457-32712476 None:intergenic 30.0%
GGCTATTCACATCTAAATAA+GGG - Chr5:32710006-32710025 MsG0580026225.01.T01:intron 30.0%
GGTATAAAGATGGAAAAGAA+AGG + Chr5:32711823-32711842 None:intergenic 30.0%
GTGAAATTTGAAAAAGGGAA+AGG + Chr5:32708266-32708285 None:intergenic 30.0%
GTTATCACTTATCTGGATAT+TGG - Chr5:32712769-32712788 MsG0580026225.01.T01:intron 30.0%
TAGACCAGCTTAACAAATAA+GGG + Chr5:32711986-32712005 None:intergenic 30.0%
TAGTCACATCATATAGTCTT+CGG + Chr5:32708873-32708892 None:intergenic 30.0%
TCAGTCTTTGCTTAGTAAAT+TGG - Chr5:32709469-32709488 MsG0580026225.01.T01:intron 30.0%
TGAATTGTGATGTCAAATAG+CGG - Chr5:32708659-32708678 MsG0580026225.01.T01:CDS 30.0%
TGGCTATTCACATCTAAATA+AGG - Chr5:32710005-32710024 MsG0580026225.01.T01:intron 30.0%
TTAGACCAGCTTAACAAATA+AGG + Chr5:32711987-32712006 None:intergenic 30.0%
TTATATAGGTCATAGTCTCA+AGG - Chr5:32708544-32708563 MsG0580026225.01.T01:exon 30.0%
TTCATTTCACATTGGATGAT+GGG + Chr5:32712680-32712699 None:intergenic 30.0%
TTCTTCCAACAAGAACTAAA+GGG + Chr5:32708095-32708114 None:intergenic 30.0%
TTTCAGAACTAGTAAAGAGA+GGG - Chr5:32710237-32710256 MsG0580026225.01.T01:intron 30.0%
TTTCATTTCACATTGGATGA+TGG + Chr5:32712681-32712700 None:intergenic 30.0%
! AAGATCTGAAGTTTCTTCTA+TGG - Chr5:32709534-32709553 MsG0580026225.01.T01:intron 30.0%
! ACATTAGCTTGGTATAAAGA+TGG + Chr5:32711833-32711852 None:intergenic 30.0%
! AGTTTGTGTCATTCTAACTT+TGG - Chr5:32712109-32712128 MsG0580026225.01.T01:intron 30.0%
! ATATCCCTTATTTGTTAAGC+TGG - Chr5:32711979-32711998 MsG0580026225.01.T01:intron 30.0%
! ATCTTTCTTGGTGATTGATT+AGG + Chr5:32712445-32712464 None:intergenic 30.0%
! CCTTTTGCATTGTATATGTT+TGG - Chr5:32709258-32709277 MsG0580026225.01.T01:intron 30.0%
! CTGGCCCTTTATTTATTATA+TGG - Chr5:32711700-32711719 MsG0580026225.01.T01:intron 30.0%
! GATCTAAGGTCTTCAAATTA+AGG + Chr5:32709011-32709030 None:intergenic 30.0%
! TATTATGTGGTGTTTCAAGT+TGG - Chr5:32712809-32712828 MsG0580026225.01.T01:intron 30.0%
! TTTTCAGAACTAGTAAAGAG+AGG - Chr5:32710236-32710255 MsG0580026225.01.T01:intron 30.0%
!! CCTATGAGCTTTGAATTAAA+AGG + Chr5:32709596-32709615 None:intergenic 30.0%
!! CCTTTTAATTCAAAGCTCAT+AGG - Chr5:32709593-32709612 MsG0580026225.01.T01:intron 30.0%
!! CTGTTAGGTCTTTTATTTAC+TGG + Chr5:32710625-32710644 None:intergenic 30.0%
!! TAAGTGATAACGGTAAATAC+AGG + Chr5:32712760-32712779 None:intergenic 30.0%
!! TTAAATTTGGCTCTAGACTT+GGG + Chr5:32709572-32709591 None:intergenic 30.0%
!! TTTAAATTTGGCTCTAGACT+TGG + Chr5:32709573-32709592 None:intergenic 30.0%
!!! CAGCTTTATTTTCGTCATTT+TGG - Chr5:32709686-32709705 MsG0580026225.01.T01:intron 30.0%
!!! CTATAGAAGACTTGTTTTAC+TGG - Chr5:32708768-32708787 MsG0580026225.01.T01:CDS 30.0%
!!! CTTCTTATTGACCTTTTTTC+AGG + Chr5:32713022-32713041 None:intergenic 30.0%
!!! GCAGTTGCATTTTGAAATAA+TGG - Chr5:32712131-32712150 MsG0580026225.01.T01:intron 30.0%
!!! TGGTTTTATGGTTTAGGTTA+TGG - Chr5:32709706-32709725 MsG0580026225.01.T01:intron 30.0%
AACATTGTGAAATCACCCTA+GGG - Chr5:32711920-32711939 MsG0580026225.01.T01:intron 35.0%
AAGGGAAAGGATTGAATAGT+TGG + Chr5:32708253-32708272 None:intergenic 35.0%
AATGACACAAACTTGAAGAG+TGG + Chr5:32712102-32712121 None:intergenic 35.0%
ACAAGAAAGATAAAGAGAGG+AGG - Chr5:32712614-32712633 MsG0580026225.01.T01:intron 35.0%
AGATACTCTCCGATAAATTG+AGG - Chr5:32713101-32713120 MsG0580026225.01.T01:exon 35.0%
ATACTCTCCGATAAATTGAG+GGG - Chr5:32713103-32713122 MsG0580026225.01.T01:exon 35.0%
ATCAAGATACTTCATGAGCT+TGG + Chr5:32712855-32712874 None:intergenic 35.0%
ATCAGAAGATTCATTCCGAT+CGG + Chr5:32713065-32713084 None:intergenic 35.0%
ATCGGAATGAATCTTCTGAT+AGG - Chr5:32713065-32713084 MsG0580026225.01.T01:exon 35.0%
ATGACACAAACTTGAAGAGT+GGG + Chr5:32712101-32712120 None:intergenic 35.0%
ATGATGTGACTAGGACATTA+GGG - Chr5:32708881-32708900 MsG0580026225.01.T01:intron 35.0%
ATTGAATACTCACTCCTCTT+GGG - Chr5:32712650-32712669 MsG0580026225.01.T01:CDS 35.0%
ATTTATAGTTAGGCCTACCA+TGG - Chr5:32712925-32712944 MsG0580026225.01.T01:intron 35.0%
CAAACACACTGTTGAAGTTT+AGG + Chr5:32711002-32711021 None:intergenic 35.0%
CAATAATAGCACGGAATTTC+TGG + Chr5:32712321-32712340 None:intergenic 35.0%
CACTAACATAGACATTAGCT+TGG + Chr5:32711844-32711863 None:intergenic 35.0%
CTTGTTAGCAATATCGTTTG+CGG - Chr5:32708940-32708959 MsG0580026225.01.T01:intron 35.0%
GAAGACTATATGATGTGACT+AGG - Chr5:32708872-32708891 MsG0580026225.01.T01:intron 35.0%
GACACAAGAAAGATAAAGAG+AGG - Chr5:32712611-32712630 MsG0580026225.01.T01:intron 35.0%
GATACTCTCCGATAAATTGA+GGG - Chr5:32713102-32713121 MsG0580026225.01.T01:exon 35.0%
GCTTCAACAAATCTGAACTT+TGG + Chr5:32711195-32711214 None:intergenic 35.0%
GTTCTTCCAACAAGAACTAA+AGG + Chr5:32708096-32708115 None:intergenic 35.0%
TAACATTGTGAAATCACCCT+AGG - Chr5:32711919-32711938 MsG0580026225.01.T01:intron 35.0%
TATGATGTGACTAGGACATT+AGG - Chr5:32708880-32708899 MsG0580026225.01.T01:intron 35.0%
TATTTGGATGAAGAACAGCT+GGG - Chr5:32710443-32710462 MsG0580026225.01.T01:intron 35.0%
TCCAAATAATAGATGTGGAG+TGG + Chr5:32711739-32711758 None:intergenic 35.0%
TCCACTCCACATCTATTATT+TGG - Chr5:32711735-32711754 MsG0580026225.01.T01:intron 35.0%
TCTCCTAGGTTGCTTATAAA+GGG - Chr5:32709945-32709964 MsG0580026225.01.T01:intron 35.0%
TCTTCCAACAAGAACTAAAG+GGG + Chr5:32708094-32708113 None:intergenic 35.0%
TGCTTATAAATGTGACCAGA+GGG - Chr5:32709215-32709234 MsG0580026225.01.T01:intron 35.0%
TGGAAAACAAACACAAGAGA+TGG + Chr5:32712301-32712320 None:intergenic 35.0%
TTAAGGAGAAACTTAGGTGA+TGG + Chr5:32709630-32709649 None:intergenic 35.0%
TTACTAGTGGTTTCAATGGA+GGG - Chr5:32711864-32711883 MsG0580026225.01.T01:intron 35.0%
TTATTTGGATGAAGAACAGC+TGG - Chr5:32710442-32710461 MsG0580026225.01.T01:intron 35.0%
TTCTCCTAGGTTGCTTATAA+AGG - Chr5:32709944-32709963 MsG0580026225.01.T01:intron 35.0%
TTGAATCACACACATAGAAC+AGG + Chr5:32709432-32709451 None:intergenic 35.0%
TTGCTTATAAATGTGACCAG+AGG - Chr5:32709214-32709233 MsG0580026225.01.T01:intron 35.0%
TTTATAAGCAACCTAGGAGA+AGG + Chr5:32709945-32709964 None:intergenic 35.0%
! AAGATACCCATTTTCAGTCA+AGG - Chr5:32711254-32711273 MsG0580026225.01.T01:intron 35.0%
! AGATACCCATTTTCAGTCAA+GGG - Chr5:32711255-32711274 MsG0580026225.01.T01:intron 35.0%
! AGCCTCCATTTCTTCATTTT+GGG + Chr5:32710099-32710118 None:intergenic 35.0%
! AGTGTTACTAGTGGTTTCAA+TGG - Chr5:32711860-32711879 MsG0580026225.01.T01:intron 35.0%
! CAATTCACAAGTATTTTCCG+CGG + Chr5:32708646-32708665 None:intergenic 35.0%
! GTCTATGTTAGTGTTACTAG+TGG - Chr5:32711851-32711870 MsG0580026225.01.T01:intron 35.0%
! TTGATGGACAGAATTCACTT+GGG - Chr5:32708490-32708509 MsG0580026225.01.T01:exon 35.0%
! TTTGATGGACAGAATTCACT+TGG - Chr5:32708489-32708508 MsG0580026225.01.T01:exon 35.0%
! TTTGTGCATCTTTGAAGGAA+AGG + Chr5:32710723-32710742 None:intergenic 35.0%
!! AGATTTGTTGAAGCATGAGA+TGG - Chr5:32711201-32711220 MsG0580026225.01.T01:intron 35.0%
!! CTTTTATTTACTGGGCTGTT+AGG + Chr5:32710616-32710635 None:intergenic 35.0%
!! GCCATTTTGGCATTATTATG+TGG - Chr5:32712796-32712815 MsG0580026225.01.T01:intron 35.0%
!! GTTGTGTTTCTCACTTTTGA+TGG - Chr5:32708474-32708493 MsG0580026225.01.T01:exon 35.0%
!!! AAGACCTTTTTTGGTATACC+CGG - Chr5:32710063-32710082 MsG0580026225.01.T01:intron 35.0%
!!! ATTTTGGGACTTTTTATCCC+GGG + Chr5:32710084-32710103 None:intergenic 35.0%
!!! CATTTTGGGACTTTTTATCC+CGG + Chr5:32710085-32710104 None:intergenic 35.0%
AAAAGAGAAGACGGGAAGAA+AGG - Chr5:32712494-32712513 MsG0580026225.01.T01:intron 40.0%
AACAAACACAAGAGATGGCA+TGG + Chr5:32712296-32712315 None:intergenic 40.0%
AACATGTATCATCCAACTCG+AGG - Chr5:32708175-32708194 MsG0580026225.01.T01:exon 40.0%
AAGCATGAGATGGTAGTAAG+TGG - Chr5:32711211-32711230 MsG0580026225.01.T01:intron 40.0%
ACTGCATATGCTATGTTGGT+TGG - Chr5:32709768-32709787 MsG0580026225.01.T01:intron 40.0%
AGAAAGATAAAGAGAGGAGG+AGG - Chr5:32712617-32712636 MsG0580026225.01.T01:intron 40.0%
AGAAGCTAGAAAGGTTGAAG+AGG - Chr5:32709879-32709898 MsG0580026225.01.T01:intron 40.0%
AGCATGAGATGGTAGTAAGT+GGG - Chr5:32711212-32711231 MsG0580026225.01.T01:intron 40.0%
AGGAAGAGAAACGTGAAAAG+CGG - Chr5:32712518-32712537 MsG0580026225.01.T01:intron 40.0%
AGGTTGCTTATAAAGGGTAG+AGG - Chr5:32709951-32709970 MsG0580026225.01.T01:intron 40.0%
ATTCTCGTGATTCAGATGAC+AGG - Chr5:32712584-32712603 MsG0580026225.01.T01:intron 40.0%
CAGACATGGGCAAAAATTCT+TGG - Chr5:32712962-32712981 MsG0580026225.01.T01:intron 40.0%
CATGGGCAAAAATTCTTGGA+AGG - Chr5:32712966-32712985 MsG0580026225.01.T01:intron 40.0%
CCAAAAAATGGGTCTGAACA+TGG + Chr5:32711332-32711351 None:intergenic 40.0%
CTACCCTTTATAAGCAACCT+AGG + Chr5:32709951-32709970 None:intergenic 40.0%
CTTAGATCACACTCTTCAAG+TGG - Chr5:32709023-32709042 MsG0580026225.01.T01:intron 40.0%
CTTCTGATAGGTTTGTGCAT+TGG - Chr5:32713077-32713096 MsG0580026225.01.T01:exon 40.0%
GAAGCTAGAAAGGTTGAAGA+GGG - Chr5:32709880-32709899 MsG0580026225.01.T01:intron 40.0%
GATTGAATACTCACTCCTCT+TGG - Chr5:32712649-32712668 MsG0580026225.01.T01:CDS 40.0%
GGTTGCTTATAAAGGGTAGA+GGG - Chr5:32709952-32709971 MsG0580026225.01.T01:intron 40.0%
GTCCCAAAATGAAGAAATGG+AGG - Chr5:32710094-32710113 MsG0580026225.01.T01:intron 40.0%
GTTAAAATTCTGCTGCACGA+TGG + Chr5:32708693-32708712 None:intergenic 40.0%
GTTACTAGTGGTTTCAATGG+AGG - Chr5:32711863-32711882 MsG0580026225.01.T01:intron 40.0%
GTTTGCTTCTGGTCACATTT+AGG - Chr5:32711017-32711036 MsG0580026225.01.T01:CDS 40.0%
TAACGGTAAATACAGGCTTC+TGG + Chr5:32712753-32712772 None:intergenic 40.0%
TACAAATGTAGCCTGAGGAT+AGG + Chr5:32709666-32709685 None:intergenic 40.0%
TACTAGTGGTTTCAATGGAG+GGG - Chr5:32711865-32711884 MsG0580026225.01.T01:intron 40.0%
TAGGATAAAGTGCAGGCTTA+AGG + Chr5:32709647-32709666 None:intergenic 40.0%
TATCCCGGGTATACCAAAAA+AGG + Chr5:32710070-32710089 None:intergenic 40.0%
TCCTTTAATTCATACGTCCG+CGG - Chr5:32708626-32708645 MsG0580026225.01.T01:CDS 40.0%
TGCTTATAAATGTGACCGGA+GGG + Chr5:32709101-32709120 None:intergenic 40.0%
TGGTACCCTTGACTGAAAAT+GGG + Chr5:32711263-32711282 None:intergenic 40.0%
TTATCAAGACGGTTACCTTG+AGG + Chr5:32710209-32710228 None:intergenic 40.0%
TTCAACAGTGTGTTTGCTTC+TGG - Chr5:32711006-32711025 MsG0580026225.01.T01:CDS 40.0%
TTCTGATGGAAAAAGCCGAT+CGG - Chr5:32713047-32713066 MsG0580026225.01.T01:exon 40.0%
TTGCTTATAAATGTGACCGG+AGG + Chr5:32709102-32709121 None:intergenic 40.0%
TTGTGGAAATCAGGCTTATG+TGG + Chr5:32708359-32708378 None:intergenic 40.0%
! AAGCACTGCATATGCTATGT+TGG - Chr5:32709764-32709783 MsG0580026225.01.T01:intron 40.0%
! CACTTGAAGAGTGTGATCTA+AGG + Chr5:32709025-32709044 None:intergenic 40.0%
! CAGCCTCCATTTCTTCATTT+TGG + Chr5:32710100-32710119 None:intergenic 40.0%
! CGAGTTGGATGATACATGTT+TGG + Chr5:32708175-32708194 None:intergenic 40.0%
! GATACATTTTCTACCTCAGC+TGG + Chr5:32712418-32712437 None:intergenic 40.0%
! GTTTAGGGTGTTAGATAGAG+AGG + Chr5:32710986-32711005 None:intergenic 40.0%
!! CTACTTAACATGGGTTGATG+TGG - Chr5:32712015-32712034 MsG0580026225.01.T01:intron 40.0%
!!! AGACCTTTTTTGGTATACCC+GGG - Chr5:32710064-32710083 MsG0580026225.01.T01:intron 40.0%
!!! CAACAGGGAAAGACCTTTTT+TGG - Chr5:32710054-32710073 MsG0580026225.01.T01:intron 40.0%
!!! CCATGTTCAGACCCATTTTT+TGG - Chr5:32711329-32711348 MsG0580026225.01.T01:intron 40.0%
!!! TTCAAGGTGTTGGTTTTGCA+AGG - Chr5:32710306-32710325 MsG0580026225.01.T01:intron 40.0%
AATTAAGGAAGAGGAGGAGC+AGG - Chr5:32710139-32710158 MsG0580026225.01.T01:intron 45.0%
ACAGCAGAAGACTTAGGTGA+AGG - Chr5:32710263-32710282 MsG0580026225.01.T01:intron 45.0%
AGCTGTACAAATGTAGCCTG+AGG + Chr5:32709671-32709690 None:intergenic 45.0%
AGCTTGCATAATACTCCCTC+TGG + Chr5:32709233-32709252 None:intergenic 45.0%
AGTTACCCGAACACTTTGGT+GGG + Chr5:32711303-32711322 None:intergenic 45.0%
ATGTATCATCCAACTCGAGG+TGG - Chr5:32708178-32708197 MsG0580026225.01.T01:exon 45.0%
CTGAGGATAGGATAAAGTGC+AGG + Chr5:32709654-32709673 None:intergenic 45.0%
CTGCACTTTATCCTATCCTC+AGG - Chr5:32709652-32709671 MsG0580026225.01.T01:intron 45.0%
GCAGGCTTAAGGAGAAACTT+AGG + Chr5:32709636-32709655 None:intergenic 45.0%
GCATGAGATGGTAGTAAGTG+GGG - Chr5:32711213-32711232 MsG0580026225.01.T01:intron 45.0%
GGTTGCTCAACCCTGAAAAA+AGG - Chr5:32713008-32713027 MsG0580026225.01.T01:exon 45.0%
GTAGAAGGATCACAACAAGC+TGG - Chr5:32711681-32711700 MsG0580026225.01.T01:intron 45.0%
GTGGTACCCTTGACTGAAAA+TGG + Chr5:32711264-32711283 None:intergenic 45.0%
GTGTAGTTACCCGAACACTT+TGG + Chr5:32711307-32711326 None:intergenic 45.0%
TAGTTACCCGAACACTTTGG+TGG + Chr5:32711304-32711323 None:intergenic 45.0%
TCCGCGGACGTATGAATTAA+AGG + Chr5:32708630-32708649 None:intergenic 45.0%
TCTCCTGCTTTCTTTCCTCA+CGG + Chr5:32712549-32712568 None:intergenic 45.0%
TGGTGTATGCAAGACCTTTG+AGG + Chr5:32712398-32712417 None:intergenic 45.0%
TTCAGGGTTGAGCAACCTAA+GGG + Chr5:32713005-32713024 None:intergenic 45.0%
TTCCTATACCTAAGGCCCTA+GGG + Chr5:32711938-32711957 None:intergenic 45.0%
TTCTTGAAGTGTACTCCCTC+CGG - Chr5:32709083-32709102 MsG0580026225.01.T01:intron 45.0%
TTTCAGGGTTGAGCAACCTA+AGG + Chr5:32713006-32713025 None:intergenic 45.0%
TTTCCTATACCTAAGGCCCT+AGG + Chr5:32711939-32711958 None:intergenic 45.0%
! TTAATTGGGGTTAGTGCAGC+AGG + Chr5:32708988-32709007 None:intergenic 45.0%
!! GGATATTGGCACTGCCATTT+TGG - Chr5:32712783-32712802 MsG0580026225.01.T01:intron 45.0%
!! GGGAGTATTATGCAAGCTGA+AGG - Chr5:32709235-32709254 MsG0580026225.01.T01:intron 45.0%
AATGTCCCTAGGACCATGGT+AGG + Chr5:32712941-32712960 None:intergenic 50.0%
AGGAACCAGGTTCTTCCCAA+GGG + Chr5:32712378-32712397 None:intergenic 50.0%
CATAGTCTCAAGGCTCCTGT+TGG - Chr5:32708554-32708573 MsG0580026225.01.T01:exon 50.0%
CCATCCTCTTTCCTTCTCCT+AGG - Chr5:32709931-32709950 MsG0580026225.01.T01:intron 50.0%
CCTAGGAGAAGGAAAGAGGA+TGG + Chr5:32709934-32709953 None:intergenic 50.0%
CCTAGGGACATTGCAGACAT+GGG - Chr5:32712949-32712968 MsG0580026225.01.T01:intron 50.0%
CCTTTCTGCCATCTACCAAC+AGG + Chr5:32708572-32708591 None:intergenic 50.0%
CTCCTGCTTTCTTTCCTCAC+GGG + Chr5:32712548-32712567 None:intergenic 50.0%
GAGAAGACGGGAAGAAAGGA+AGG - Chr5:32712498-32712517 MsG0580026225.01.T01:intron 50.0%
GCAACCTAGGAGAAGGAAAG+AGG + Chr5:32709938-32709957 None:intergenic 50.0%
GGAAGAACCTGGTTCCTCAA+AGG - Chr5:32712381-32712400 MsG0580026225.01.T01:intron 50.0%
GGGTCTACAGCAGAAGACTT+AGG - Chr5:32710257-32710276 MsG0580026225.01.T01:intron 50.0%
GGTTGCTCTATAGTCCCCTT+AGG - Chr5:32712987-32713006 MsG0580026225.01.T01:intron 50.0%
TCAATGGAGGGGAGTGGAAA+TGG - Chr5:32711876-32711895 MsG0580026225.01.T01:intron 50.0%
TCAGGGTTGAGCAACCTAAG+GGG + Chr5:32713004-32713023 None:intergenic 50.0%
TCCTAGGGACATTGCAGACA+TGG - Chr5:32712948-32712967 MsG0580026225.01.T01:intron 50.0%
TGAAATCACCCTAGGGCCTT+AGG - Chr5:32711927-32711946 MsG0580026225.01.T01:intron 50.0%
TGGATGAAGAACAGCTGGGT+GGG - Chr5:32710447-32710466 MsG0580026225.01.T01:intron 50.0%
TTAGGCCTACCATGGTCCTA+GGG - Chr5:32712933-32712952 MsG0580026225.01.T01:intron 50.0%
TTCCCGTGAGGAAAGAAAGC+AGG - Chr5:32712543-32712562 MsG0580026225.01.T01:intron 50.0%
TTGGATGAAGAACAGCTGGG+TGG - Chr5:32710446-32710465 MsG0580026225.01.T01:intron 50.0%
! AGCAGGAGAAGCGTGAGAAA+CGG - Chr5:32712560-32712579 MsG0580026225.01.T01:intron 50.0%
! CCTGTTGGTAGATGGCAGAA+AGG - Chr5:32708569-32708588 MsG0580026225.01.T01:CDS 50.0%
! GGTTTGCTTGTGGTGACATG+TGG - Chr5:32710468-32710487 MsG0580026225.01.T01:intron 50.0%
! TCAAGGCTCCTGTTGGTAGA+TGG - Chr5:32708561-32708580 MsG0580026225.01.T01:exon 50.0%
! TGCAAGACCTTTGAGGAACC+AGG + Chr5:32712391-32712410 None:intergenic 50.0%
!! GGATGATGGGAAAACCCAAG+AGG + Chr5:32712667-32712686 None:intergenic 50.0%
AACCAGGTTCTTCCCAAGGG+CGG + Chr5:32712375-32712394 None:intergenic 55.0%
AAGAGGAGGAGCAGGCAATG+AGG - Chr5:32710147-32710166 MsG0580026225.01.T01:intron 55.0%
AAGCGTGCTAGTCGTCCTCA+AGG - Chr5:32710191-32710210 MsG0580026225.01.T01:intron 55.0%
AAGGTCACGCTGAAGCAGCA+AGG - Chr5:32710282-32710301 MsG0580026225.01.T01:intron 55.0%
AATGAGGGAAGCTCTCGGCT+TGG - Chr5:32710163-32710182 MsG0580026225.01.T01:intron 55.0%
ACTTACGATCTCGACCGCCA+CGG + Chr5:32708207-32708226 None:intergenic 55.0%
AGAGGAGGAGCAGGCAATGA+GGG - Chr5:32710148-32710167 MsG0580026225.01.T01:intron 55.0%
AGGTCACGCTGAAGCAGCAA+GGG - Chr5:32710283-32710302 MsG0580026225.01.T01:intron 55.0%
ATGGAGGGGAGTGGAAATGG+TGG - Chr5:32711879-32711898 MsG0580026225.01.T01:intron 55.0%
CACCCTAGGGCCTTAGGTAT+AGG - Chr5:32711933-32711952 MsG0580026225.01.T01:intron 55.0%
CAGGCAATGAGGGAAGCTCT+CGG - Chr5:32710158-32710177 MsG0580026225.01.T01:intron 55.0%
CCCATGTCTGCAATGTCCCT+AGG + Chr5:32712952-32712971 None:intergenic 55.0%
CTGCAATGTCCCTAGGACCA+TGG + Chr5:32712945-32712964 None:intergenic 55.0%
GAGGAACCAGGTTCTTCCCA+AGG + Chr5:32712379-32712398 None:intergenic 55.0%
GCAGCAAGGGTTCAAGGTGT+TGG - Chr5:32710296-32710315 MsG0580026225.01.T01:intron 55.0%
GCTGAAGCAGCAAGGGTTCA+AGG - Chr5:32710290-32710309 MsG0580026225.01.T01:intron 55.0%
GGTCTTGCATACACCAGCTG+AGG - Chr5:32712402-32712421 MsG0580026225.01.T01:intron 55.0%
GTGGTTTCAATGGAGGGGAG+TGG - Chr5:32711870-32711889 MsG0580026225.01.T01:intron 55.0%
GTTAGGCCTACCATGGTCCT+AGG - Chr5:32712932-32712951 MsG0580026225.01.T01:intron 55.0%
TACCCGAACACTTTGGTGGG+TGG + Chr5:32711300-32711319 None:intergenic 55.0%
TGAAAAGCGGCATTCCCGTG+AGG - Chr5:32712531-32712550 MsG0580026225.01.T01:intron 55.0%
TGAGGACGACTAGCACGCTT+AGG + Chr5:32710191-32710210 None:intergenic 55.0%
TGGAGGGGAGTGGAAATGGT+GGG - Chr5:32711880-32711899 MsG0580026225.01.T01:intron 55.0%
! ACCCGAACACTTTGGTGGGT+GGG + Chr5:32711299-32711318 None:intergenic 55.0%
! TCCCCACCCACCAAAGTGTT+CGG - Chr5:32711294-32711313 MsG0580026225.01.T01:intron 55.0%
GGGTGGGGAGATGGATACTG+TGG + Chr5:32711283-32711302 None:intergenic 60.0%
GTGCAGAGAACTCCGCCCTT+GGG - Chr5:32712360-32712379 MsG0580026225.01.T01:intron 60.0%
TGTGCAGAGAACTCCGCCCT+TGG - Chr5:32712359-32712378 MsG0580026225.01.T01:intron 60.0%
! CACTTTGGTGGGTGGGGAGA+TGG + Chr5:32711292-32711311 None:intergenic 60.0%
! CAGCTGGGTGGGTTTGCTTG+TGG - Chr5:32710458-32710477 MsG0580026225.01.T01:intron 60.0%
! CCCCACCCACCAAAGTGTTC+GGG - Chr5:32711295-32711314 MsG0580026225.01.T01:intron 60.0%
! CCCGAACACTTTGGTGGGTG+GGG + Chr5:32711298-32711317 None:intergenic 60.0%
CTCCGCCCTTGGGAAGAACC+TGG - Chr5:32712370-32712389 MsG0580026225.01.T01:intron 65.0%
ACTCGAGGTGGCGTCCGTGG+CGG - Chr5:32708190-32708209 MsG0580026225.01.T01:exon 70.0%
CCAACTCGAGGTGGCGTCCG+TGG - Chr5:32708187-32708206 MsG0580026225.01.T01:exon 70.0%
CCACGGACGCCACCTCGAGT+TGG + Chr5:32708190-32708209 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr5 gene 32708090 32713131 32708090 ID=MsG0580026225.01;
Chr5 mRNA 32708090 32713131 32708090 ID=MsG0580026225.01.T01;Parent=MsG0580026225.01
Chr5 exon 32708090 32708855 32708090 ID=MsG0580026225.01.T01.exon;Parent=MsG0580026225.01.T01
Chr5 CDS 32708567 32708855 32708567 ID=MsG0580026225.01.T01.cds;Parent=MsG0580026225.01.T01
Chr5 CDS 32710894 32711161 32710894 ID=MsG0580026225.01.T01.cds;Parent=MsG0580026225.01.T01
Chr5 exon 32710894 32711161 32710894 ID=MsG0580026225.01.T01.exon;Parent=MsG0580026225.01.T01
Chr5 CDS 32712631 32712720 32712631 ID=MsG0580026225.01.T01.cds;Parent=MsG0580026225.01.T01
Chr5 exon 32712631 32712720 32712631 ID=MsG0580026225.01.T01.exon;Parent=MsG0580026225.01.T01
Chr5 CDS 32713001 32713043 32713001 ID=MsG0580026225.01.T01.cds;Parent=MsG0580026225.01.T01
Chr5 exon 32713001 32713131 32713001 ID=MsG0580026225.01.T01.exon;Parent=MsG0580026225.01.T01
Gene Sequence

>MsG0580026225.01.T01

ATGTATCATCCAACTCGAGGTGGCGTCCGTGGCGGTCGAGATCAATTCACTTGGGATGATGTAAAAGCTGATAAACACAGAGAGAATTATATAGGTCATAGTCTCAAGGCTCCTGTTGGTAGATGGCAGAAAGGGAAAGACCTTTTTTGGTATACCCGGGATAAAAAGTCCCAAAATGAAGAAATGGAGGCTGCAAAAGAAGAGATAAAAAGAATTAAGGAAGAGGAGGAGCAGGCAATGAGGGAAGCTCTCGGCTTGGCTCCTAAGCGTGCTAGTCGTCCTCAAGGTAACCGTCTTGATAAACATGAATTTTCAGAACTAGTAAAGAGAGGGTCTACAGCAGAAGACTTAGGTGAAGGTCACGCTGAAGCAGCAAGGGTTCAAGGTGTTGGTTTTGCAAGAGAACTCCGCCCTTGGGAAGAACCTGGTTCCTCAAAGGTCTTGCATACACCAGCTGAGGTAGAAAATGTATCTATGCCTAATCAATCACCAAGAAAGATTGAAGATGAATCTGAGGATGAAAGTAGAAAAAAGAGAAGACGGGAAGAAAGGAAGGAAGAGAAACGTGAAAAGCGGCATTCCCGTGAGGAAAGAAAGCAGGAGAAGCGTGAGAAACGGCATTCTCGTGATTCAGATGACAGGAAGAGACACAAGAAAGATAAAGAGAGGAGGAGGCATGATTCAGATTGA

Protein sequence

>MsG0580026225.01.T01

MYHPTRGGVRGGRDQFTWDDVKADKHRENYIGHSLKAPVGRWQKGKDLFWYTRDKKSQNEEMEAAKEEIKRIKEEEEQAMREALGLAPKRASRPQGNRLDKHEFSELVKRGSTAEDLGEGHAEAARVQGVGFARELRPWEEPGSSKVLHTPAEVENVSMPNQSPRKIEDESEDESRKKRRREERKEEKREKRHSREERKQEKREKRHSRDSDDRKRHKKDKERRRHDSD*