AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580025756.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580025756.01.T01 MTR_5g034050 98.438 64 1 0 1 64 1 64 1.81e-43 134
MsG0580025756.01.T01 MTR_4g075600 98.438 64 1 0 1 64 1 64 4.04e-43 136
MsG0580025756.01.T01 MTR_5g034040 82.812 64 11 0 1 64 53 116 3.22e-37 120
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580025756.01.T01 AT1G61700 90.625 64 6 0 1 64 1 64 1.01e-40 127
MsG0580025756.01.T01 AT1G11475 92.188 64 5 0 1 64 1 64 3.72e-40 126

Find 24 sgRNAs with CRISPR-Local

Find 164 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAGATGCACTGGATGCTTT+GGG 0.324706 5:-23763292 MsG0580025756.01.T01:CDS
CAAAATCGTTATTTAGCGTT+TGG 0.346017 5:+23766389 None:intergenic
TAGAGATGCACTGGATGCTT+TGG 0.346976 5:-23763293 MsG0580025756.01.T01:CDS
GTTTCTTCTAATTAGGTCAT+TGG 0.370379 5:-23766163 MsG0580025756.01.T01:intron
ATTAGGTCATTGGAAACAAA+TGG 0.383611 5:-23766153 MsG0580025756.01.T01:intron
GCATACGCCTGCAGCAATAT+CGG 0.413628 5:+23763263 None:intergenic
AATTCAGTAGCTTCTCGATA+AGG 0.428935 5:+23763224 None:intergenic
CCGCAGGTGAAACAACGAAC+TGG 0.441163 5:+23766317 None:intergenic
GGTTGGTCCGATATTGCTGC+AGG 0.484942 5:-23763270 MsG0580025756.01.T01:CDS
CTTCAAGCTGATTACACTGA+AGG 0.490470 5:-23766112 MsG0580025756.01.T01:CDS
TGCACTGGATGCTTTGGGGT+TGG 0.493715 5:-23763287 MsG0580025756.01.T01:CDS
TTAGGTCATTGGAAACAAAT+GGG 0.513383 5:-23766152 MsG0580025756.01.T01:intron
CGCAGGTGAAACAACGAACT+GGG 0.523249 5:+23766318 None:intergenic
TTCAAGCTGATTACACTGAA+GGG 0.534819 5:-23766111 MsG0580025756.01.T01:intron
AATATTAGAAACCTTTCCGC+AGG 0.560876 5:+23766301 None:intergenic
GATTGATTATAGAGATGCAC+TGG 0.568145 5:-23763302 MsG0580025756.01.T01:intron
TCGTTGTTTCACCTGCGGAA+AGG 0.581187 5:-23766312 MsG0580025756.01.T01:intron
AAAGGGTTTCTACTGTTGTG+CGG 0.603762 5:-23766366 MsG0580025756.01.T01:five_prime_UTR
CCAGTTCGTTGTTTCACCTG+CGG 0.606400 5:-23766317 MsG0580025756.01.T01:CDS
GCTTCTCGATAAGGTCAACA+TGG 0.614974 5:+23763233 None:intergenic
GAGATGCACTGGATGCTTTG+GGG 0.651978 5:-23763291 MsG0580025756.01.T01:CDS
AATCAGCTTGAAGAAAGTCA+AGG 0.662224 5:+23766122 None:intergenic
CTTCTCGATAAGGTCAACAT+GGG 0.682743 5:+23763234 None:intergenic
GTTGTGCGGCGTGAGCAGAG+AGG 0.743382 5:-23766352 MsG0580025756.01.T01:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTATTTATTATTTAACATAA+TGG - Chr5:23766272-23766291 MsG0580025756.01.T01:intron 10.0%
!! ACAAATTTAGTAAAAGATAA+TGG + Chr5:23765509-23765528 None:intergenic 15.0%
!! ACTGTTAATGATTTAATTAT+AGG + Chr5:23765043-23765062 None:intergenic 15.0%
!! CGATAACAAAAAAAAATTAT+CGG - Chr5:23764338-23764357 MsG0580025756.01.T01:intron 15.0%
!! GATAACAAAAAAAAATTATC+GGG - Chr5:23764339-23764358 MsG0580025756.01.T01:intron 15.0%
!! GATTTAATTATAGGAATTAT+GGG + Chr5:23765034-23765053 None:intergenic 15.0%
!! TACAAATATAATTTCTCTTA+AGG + Chr5:23763991-23764010 None:intergenic 15.0%
!! TGATTTAATTATAGGAATTA+TGG + Chr5:23765035-23765054 None:intergenic 15.0%
!! TTTATTATTTAACATAATGG+TGG - Chr5:23766275-23766294 MsG0580025756.01.T01:intron 15.0%
!!! ATAATTTTTTTTTGTTATCG+TGG + Chr5:23764338-23764357 None:intergenic 15.0%
!!! ATCTTTTCTTTAGTTTAATA+TGG - Chr5:23765838-23765857 MsG0580025756.01.T01:intron 15.0%
!!! TATTACAAAATGCAATTTTA+AGG + Chr5:23765621-23765640 None:intergenic 15.0%
!!! TTTAACGATTTTGAAATTTA+GGG - Chr5:23763383-23763402 MsG0580025756.01.T01:intron 15.0%
!!! TTTTAACGATTTTGAAATTT+AGG - Chr5:23763382-23763401 MsG0580025756.01.T01:intron 15.0%
!! AAAAAAAGTTGTGAAACTAA+AGG + Chr5:23765480-23765499 None:intergenic 20.0%
!! AAAAAAGTTGTGAAACTAAA+GGG + Chr5:23765479-23765498 None:intergenic 20.0%
!! ATTGAAACAACTTATACATA+AGG + Chr5:23763688-23763707 None:intergenic 20.0%
!! CTTAAGTTATAGTTGTAATT+TGG - Chr5:23765765-23765784 MsG0580025756.01.T01:intron 20.0%
!! GGAGATTACAAATTTATATT+GGG + Chr5:23765013-23765032 None:intergenic 20.0%
!! TAAGTCATAAATATAATTGC+TGG - Chr5:23764244-23764263 MsG0580025756.01.T01:intron 20.0%
!! TATGAATTTCCTGTATTTAA+AGG + Chr5:23764947-23764966 None:intergenic 20.0%
!! TTGTTTATTAACTTATCGAA+AGG - Chr5:23765675-23765694 MsG0580025756.01.T01:intron 20.0%
!!! ACAGTTTTAAGATTAAACAA+TGG - Chr5:23764413-23764432 MsG0580025756.01.T01:intron 20.0%
!!! CAACTTTTTTTTTTTCTTCT+AGG - Chr5:23763822-23763841 MsG0580025756.01.T01:intron 20.0%
!!! GCATTTTTAAGATTAAACAA+TGG - Chr5:23766045-23766064 MsG0580025756.01.T01:intron 20.0%
!!! TAGTTTCACAACTTTTTTTT+TGG - Chr5:23765481-23765500 MsG0580025756.01.T01:intron 20.0%
!!! TCTTTTACTAAATTTGTTTC+CGG - Chr5:23765512-23765531 MsG0580025756.01.T01:intron 20.0%
!!! TGTAATGGTAACTTTTAAAA+AGG + Chr5:23766104-23766123 None:intergenic 20.0%
!!! TTCATTTTGATCTTAAACTA+TGG + Chr5:23764488-23764507 None:intergenic 20.0%
! AATCATTGTGTATATACTAC+AGG - Chr5:23766161-23766180 MsG0580025756.01.T01:intron 25.0%
! AATTAAGTGCTTATAGCATA+AGG - Chr5:23763617-23763636 MsG0580025756.01.T01:intron 25.0%
! ATAAGTCTATTCTGTTTCAA+TGG - Chr5:23765553-23765572 MsG0580025756.01.T01:intron 25.0%
! ATAGAGAGTTATCCATAAAT+TGG + Chr5:23764017-23764036 None:intergenic 25.0%
! ATATTTGTACGACCAATTTA+TGG - Chr5:23764002-23764021 MsG0580025756.01.T01:intron 25.0%
! ATCATTGTGTATATACTACA+GGG - Chr5:23766162-23766181 MsG0580025756.01.T01:intron 25.0%
! ATCTATTCAGATAAATGAAC+AGG + Chr5:23765119-23765138 None:intergenic 25.0%
! ATCTCTTCAGAAGTTATTAT+TGG - Chr5:23765726-23765745 MsG0580025756.01.T01:intron 25.0%
! ATTAATGTCTTAAGTGCTTA+TGG - Chr5:23765218-23765237 MsG0580025756.01.T01:intron 25.0%
! ATTACACAAATGCAATTCTA+AGG + Chr5:23764119-23764138 None:intergenic 25.0%
! GCTGAAATAATTATGATACT+TGG - Chr5:23765151-23765170 MsG0580025756.01.T01:intron 25.0%
! GGAATTCTACAATAATAAAG+AGG - Chr5:23765073-23765092 MsG0580025756.01.T01:intron 25.0%
! GGGAGATTACAAATTTATAT+TGG + Chr5:23765014-23765033 None:intergenic 25.0%
! GTTAAATACCTATATCTGTT+TGG - Chr5:23763583-23763602 MsG0580025756.01.T01:intron 25.0%
! TCATTAACAGTCATAACTAA+AGG - Chr5:23765052-23765071 MsG0580025756.01.T01:intron 25.0%
! TGTATTTAAAGGTTGTTAGA+AGG + Chr5:23764936-23764955 None:intergenic 25.0%
! TTCTAACAACCTTTAAATAC+AGG - Chr5:23764935-23764954 MsG0580025756.01.T01:intron 25.0%
!! GATATTTGTACAACCATTTT+GGG + Chr5:23764086-23764105 None:intergenic 25.0%
!! TGATATTTGTACAACCATTT+TGG + Chr5:23764087-23764106 None:intergenic 25.0%
!! TTCATCTCTAAAGGAATATA+AGG - Chr5:23766138-23766157 MsG0580025756.01.T01:CDS 25.0%
!! TTTTGTACTAAATATGTCTC+TGG - Chr5:23763853-23763872 MsG0580025756.01.T01:intron 25.0%
!! TTTTGTCATATAAGTGCTTA+TGG - Chr5:23763640-23763659 MsG0580025756.01.T01:intron 25.0%
!!! ATTTTTTTTTGTTATCGTGG+TGG + Chr5:23764335-23764354 None:intergenic 25.0%
!!! CAATTGTTAGATTTTAGAAC+AGG - Chr5:23764646-23764665 MsG0580025756.01.T01:intron 25.0%
!!! CTGTTCTAAAATCTAACAAT+TGG + Chr5:23764648-23764667 None:intergenic 25.0%
!!! CTTTTTTTTTTTCTTCTAGG+TGG - Chr5:23763825-23763844 MsG0580025756.01.T01:intron 25.0%
!!! GCTAAATAACGATTTTGAAA+GGG - Chr5:23763216-23763235 MsG0580025756.01.T01:CDS 25.0%
!!! TTGACTTGTTTCTTCTAATT+AGG - Chr5:23763429-23763448 MsG0580025756.01.T01:intron 25.0%
!!! TTTGTCTGTTTTGAAATAGT+TGG - Chr5:23764182-23764201 MsG0580025756.01.T01:intron 25.0%
AATAGCTAGATACTTGCTTT+CGG - Chr5:23763549-23763568 MsG0580025756.01.T01:intron 30.0%
AATAGGAAGAGAAAGCAATT+AGG + Chr5:23763521-23763540 None:intergenic 30.0%
ACTTCAATATTGCACAACAA+TGG + Chr5:23764208-23764227 None:intergenic 30.0%
AGTTGGGTATAACAATGTAA+TGG + Chr5:23766119-23766138 None:intergenic 30.0%
ATAGGAAGAGAAAGCAATTA+GGG + Chr5:23763520-23763539 None:intergenic 30.0%
ATATAAGTGCTTATGGCATA+AGG - Chr5:23763647-23763666 MsG0580025756.01.T01:intron 30.0%
ATATTGAAGTTGTAACCCAT+TGG - Chr5:23764218-23764237 MsG0580025756.01.T01:intron 30.0%
ATTAACTTATCGAAAGGATG+AGG - Chr5:23765681-23765700 MsG0580025756.01.T01:intron 30.0%
ATTAGGTCATTGGAAACAAA+TGG - Chr5:23763446-23763465 MsG0580025756.01.T01:intron 30.0%
ATTTATGACTTACGACCAAT+GGG + Chr5:23764236-23764255 None:intergenic 30.0%
CAAAATCGTTATTTAGCGTT+TGG + Chr5:23763213-23763232 None:intergenic 30.0%
CATACAACAACATTGAAAAG+TGG + Chr5:23763945-23763964 None:intergenic 30.0%
CTGTATATCCAAACAGATAT+AGG + Chr5:23763594-23763613 None:intergenic 30.0%
GTATATACTACAGGGATATT+AGG - Chr5:23766170-23766189 MsG0580025756.01.T01:intron 30.0%
GTTTCTTCTAATTAGGTCAT+TGG - Chr5:23763436-23763455 MsG0580025756.01.T01:intron 30.0%
TATTTATGACTTACGACCAA+TGG + Chr5:23764237-23764256 None:intergenic 30.0%
TGCTACATACATTATTTGAG+TGG - Chr5:23765789-23765808 MsG0580025756.01.T01:intron 30.0%
TTAAATGAGCTGATAACCTA+GGG - Chr5:23765915-23765934 MsG0580025756.01.T01:intron 30.0%
TTAACTTATCGAAAGGATGA+GGG - Chr5:23765682-23765701 MsG0580025756.01.T01:intron 30.0%
TTAGGTCATTGGAAACAAAT+GGG - Chr5:23763447-23763466 MsG0580025756.01.T01:intron 30.0%
TTGAAAAGTGGAAACTAATC+AGG + Chr5:23763933-23763952 None:intergenic 30.0%
TTGGGCTGTTAGAAATTTAT+AGG + Chr5:23764995-23765014 None:intergenic 30.0%
TTTAAATGAGCTGATAACCT+AGG - Chr5:23765914-23765933 MsG0580025756.01.T01:intron 30.0%
! ATTCCTTTAGAGATGAAGTT+GGG + Chr5:23766135-23766154 None:intergenic 30.0%
! CAACTACGAAAAAACTTGTT+TGG - Chr5:23765981-23766000 MsG0580025756.01.T01:intron 30.0%
! CGCTAAATAACGATTTTGAA+AGG - Chr5:23763215-23763234 MsG0580025756.01.T01:CDS 30.0%
! GATACTTGGAAACTTTTATG+TGG - Chr5:23765165-23765184 MsG0580025756.01.T01:intron 30.0%
! TATTCCTTTAGAGATGAAGT+TGG + Chr5:23766136-23766155 None:intergenic 30.0%
!! ATTATTGGCTTATAACTCAG+CGG - Chr5:23765741-23765760 MsG0580025756.01.T01:intron 30.0%
!! CTAGCTATTTTCACAGAAAT+AGG + Chr5:23763538-23763557 None:intergenic 30.0%
!! CTGTTCTAAAATCCAACAAT+TGG - Chr5:23764552-23764571 MsG0580025756.01.T01:intron 30.0%
!! GCATTTTAATGTCATTCTCT+TGG - Chr5:23766226-23766245 MsG0580025756.01.T01:intron 30.0%
!!! CTACACCAAGTTTTTTTCTA+CGG + Chr5:23764365-23764384 None:intergenic 30.0%
AATATTAGAAACCTTTCCGC+AGG + Chr5:23763301-23763320 None:intergenic 35.0%
AATCAGCTTGAAGAAAGTCA+AGG + Chr5:23763480-23763499 None:intergenic 35.0%
AATTCAGTAGCTTCTCGATA+AGG + Chr5:23766378-23766397 None:intergenic 35.0%
ACTAATCAGGCTACAACATA+AGG + Chr5:23763920-23763939 None:intergenic 35.0%
AGCTTGTATGGAACTATTGA+AGG - Chr5:23764808-23764827 MsG0580025756.01.T01:intron 35.0%
AGGCTACAACATAAGGAAAT+TGG + Chr5:23763913-23763932 None:intergenic 35.0%
ATACCCAACTTCATCTCTAA+AGG - Chr5:23766129-23766148 MsG0580025756.01.T01:CDS 35.0%
CTATTCTGTTTCAATGGTTC+TGG - Chr5:23765559-23765578 MsG0580025756.01.T01:intron 35.0%
CTCTTAAGGTATACATCAAC+TGG + Chr5:23763977-23763996 None:intergenic 35.0%
CTGTTCTAATTTCCATCAAG+TGG + Chr5:23764864-23764883 None:intergenic 35.0%
GATTGATTATAGAGATGCAC+TGG - Chr5:23766297-23766316 MsG0580025756.01.T01:intron 35.0%
GTTTATCTCCATAAACTCCA+CGG + Chr5:23763774-23763793 None:intergenic 35.0%
TACTATATGCATTACTCGAG+TGG - Chr5:23764268-23764287 MsG0580025756.01.T01:intron 35.0%
TATCGTATTTCCATATCTCC+AGG + Chr5:23765351-23765370 None:intergenic 35.0%
TTCAAGCTGATTACACTGAA+GGG - Chr5:23763488-23763507 MsG0580025756.01.T01:intron 35.0%
TTCTTCTTCCCTCTTCTTTA+GGG + Chr5:23764057-23764076 None:intergenic 35.0%
TTGTTTGGCGGTATGAAATT+CGG - Chr5:23765996-23766015 MsG0580025756.01.T01:intron 35.0%
TTTATCTCCATAAACTCCAC+GGG + Chr5:23763773-23763792 None:intergenic 35.0%
! AATTTGTTTCCGGCATACTT+TGG - Chr5:23765522-23765541 MsG0580025756.01.T01:intron 35.0%
! ACTAAAGGGCATGTTTGAAT+TGG + Chr5:23765465-23765484 None:intergenic 35.0%
! AGCTTTTTAGACATGAGAAC+TGG + Chr5:23765948-23765967 None:intergenic 35.0%
! CTACGAAAAAACTTGTTTGG+CGG - Chr5:23765984-23766003 MsG0580025756.01.T01:intron 35.0%
! CTTTTTAGACATGAGAACTG+GGG + Chr5:23765946-23765965 None:intergenic 35.0%
! GCATTTTGTAATAGATGTCG+CGG - Chr5:23765628-23765647 MsG0580025756.01.T01:intron 35.0%
! GCTTTTTAGACATGAGAACT+GGG + Chr5:23765947-23765966 None:intergenic 35.0%
! TGTTTTCATAAGTTATCCCG+TGG - Chr5:23763754-23763773 MsG0580025756.01.T01:intron 35.0%
! TTTTCATAGCCAAAGTATGC+CGG + Chr5:23765534-23765553 None:intergenic 35.0%
!! AAAACTTGGTGTAGACTACT+AGG - Chr5:23764371-23764390 MsG0580025756.01.T01:intron 35.0%
!! CTGTTCTAAAATCCAGCAAT+TGG - Chr5:23764768-23764787 MsG0580025756.01.T01:intron 35.0%
!! TGGAGTTGATGATACTGAAA+AGG + Chr5:23764315-23764334 None:intergenic 35.0%
AAAGGGTTTCTACTGTTGTG+CGG - Chr5:23763233-23763252 MsG0580025756.01.T01:CDS 40.0%
AAGCACTTGTGAGACTGTTT+GGG + Chr5:23765417-23765436 None:intergenic 40.0%
AAGTTATCCCGTGGAGTTTA+TGG - Chr5:23763763-23763782 MsG0580025756.01.T01:intron 40.0%
AGAAGAAGGTTGTCCCAAAA+TGG - Chr5:23764070-23764089 MsG0580025756.01.T01:intron 40.0%
AGCAATTGGTATCACAGCTT+CGG - Chr5:23764782-23764801 MsG0580025756.01.T01:intron 40.0%
AGCTTGTAAGGCATGATTGA+AGG - Chr5:23764592-23764611 MsG0580025756.01.T01:intron 40.0%
ATCAAGTGGTATCAGAGCTT+CGG + Chr5:23764850-23764869 None:intergenic 40.0%
CACAAACTAACCTGGAGATA+TGG - Chr5:23765338-23765357 MsG0580025756.01.T01:intron 40.0%
CTAAAGAAGAGGGAAGAAGA+AGG - Chr5:23764056-23764075 MsG0580025756.01.T01:intron 40.0%
CTTCAAGCTGATTACACTGA+AGG - Chr5:23763487-23763506 MsG0580025756.01.T01:intron 40.0%
CTTCTCGATAAGGTCAACAT+GGG + Chr5:23766368-23766387 None:intergenic 40.0%
CTTCTTCTTCCCTCTTCTTT+AGG + Chr5:23764058-23764077 None:intergenic 40.0%
GAAGCTGTGATACCAATTGT+TGG + Chr5:23764567-23764586 None:intergenic 40.0%
GTTTCTGTCCCTAAAGAAGA+GGG - Chr5:23764046-23764065 MsG0580025756.01.T01:intron 40.0%
TAAGCACTTGTGAGACTGTT+TGG + Chr5:23765418-23765437 None:intergenic 40.0%
TCTGTTTCCACAAACTAACC+TGG - Chr5:23765330-23765349 MsG0580025756.01.T01:intron 40.0%
! TGTTTCTGTCCCTAAAGAAG+AGG - Chr5:23764045-23764064 MsG0580025756.01.T01:intron 40.0%
!! CATATCTCCAGGTTAGTTTG+TGG + Chr5:23765340-23765359 None:intergenic 40.0%
AGAGATGCACTGGATGCTTT+GGG - Chr5:23766307-23766326 MsG0580025756.01.T01:intron 45.0%
ATGAAATTCGGATCGGATGC+AGG - Chr5:23766008-23766027 MsG0580025756.01.T01:intron 45.0%
CAGCTTCAGTTGAGCTTGTA+AGG - Chr5:23764580-23764599 MsG0580025756.01.T01:intron 45.0%
CTCACAAGTGCTTATGTCAG+TGG - Chr5:23765424-23765443 MsG0580025756.01.T01:intron 45.0%
GAAGCTGTGATACCAATTGC+TGG + Chr5:23764783-23764802 None:intergenic 45.0%
GAGCTTCGGTTAAGCTTGTA+AGG + Chr5:23764836-23764855 None:intergenic 45.0%
GCTTCTCGATAAGGTCAACA+TGG + Chr5:23766369-23766388 None:intergenic 45.0%
TAGAGATGCACTGGATGCTT+TGG - Chr5:23766306-23766325 MsG0580025756.01.T01:intron 45.0%
TCGGGCCGTAGAAAAAAACT+TGG - Chr5:23764357-23764376 MsG0580025756.01.T01:intron 45.0%
TGAAATTCGGATCGGATGCA+GGG - Chr5:23766009-23766028 MsG0580025756.01.T01:intron 45.0%
TGGCGGTATGAAATTCGGAT+CGG - Chr5:23766001-23766020 MsG0580025756.01.T01:intron 45.0%
TGTCTCTGGCATTCATTCTC+TGG - Chr5:23763867-23763886 MsG0580025756.01.T01:intron 45.0%
TTAGACATGAGAACTGGGGA+AGG + Chr5:23765942-23765961 None:intergenic 45.0%
! GAAGCTCTGATACCACTTGA+TGG - Chr5:23764849-23764868 MsG0580025756.01.T01:intron 45.0%
!! CAGCTTCGGTTTAGCTTGTA+TGG - Chr5:23764796-23764815 MsG0580025756.01.T01:intron 45.0%
CGCAGGTGAAACAACGAACT+GGG + Chr5:23763284-23763303 None:intergenic 50.0%
GAGATGCACTGGATGCTTTG+GGG - Chr5:23766308-23766327 MsG0580025756.01.T01:intron 50.0%
GCATACGCCTGCAGCAATAT+CGG + Chr5:23766339-23766358 None:intergenic 50.0%
! CCAGTTCGTTGTTTCACCTG+CGG - Chr5:23763282-23763301 MsG0580025756.01.T01:CDS 50.0%
! TCGTTGTTTCACCTGCGGAA+AGG - Chr5:23763287-23763306 MsG0580025756.01.T01:CDS 50.0%
CCGCAGGTGAAACAACGAAC+TGG + Chr5:23763285-23763304 None:intergenic 55.0%
! GGTTGGTCCGATATTGCTGC+AGG - Chr5:23766329-23766348 MsG0580025756.01.T01:CDS 55.0%
!! TGCACTGGATGCTTTGGGGT+TGG - Chr5:23766312-23766331 MsG0580025756.01.T01:intron 55.0%
GAGAACTGGGGAAGGACCCT+AGG + Chr5:23765934-23765953 None:intergenic 60.0%
GTTGTGCGGCGTGAGCAGAG+AGG - Chr5:23763247-23763266 MsG0580025756.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr5 gene 23763207 23766414 23763207 ID=MsG0580025756.01;Name=MsG0580025756.01
Chr5 mRNA 23763207 23766414 23763207 ID=MsG0580025756.01.T01;Parent=MsG0580025756.01;Name=MsG0580025756.01.T01;_AED=0.49;_eAED=0.50;_QI=66|1|0.66|1|0|0|3|0|66
Chr5 exon 23763207 23763312 23763207 ID=MsG0580025756.01.T01:exon:4514;Parent=MsG0580025756.01.T01
Chr5 exon 23766112 23766170 23766112 ID=MsG0580025756.01.T01:exon:4513;Parent=MsG0580025756.01.T01
Chr5 exon 23766313 23766414 23766313 ID=MsG0580025756.01.T01:exon:4512;Parent=MsG0580025756.01.T01
Chr5 five_prime_UTR 23766349 23766414 23766349 ID=MsG0580025756.01.T01:five_prime_utr;Parent=MsG0580025756.01.T01
Chr5 CDS 23766313 23766348 23766313 ID=MsG0580025756.01.T01:cds;Parent=MsG0580025756.01.T01
Chr5 CDS 23766112 23766170 23766112 ID=MsG0580025756.01.T01:cds;Parent=MsG0580025756.01.T01
Chr5 CDS 23763207 23763312 23763207 ID=MsG0580025756.01.T01:cds;Parent=MsG0580025756.01.T01
Gene Sequence

>MsG0580025756.01.T01

ATGATTATCCCAGTTCGTTGTTTCACCTGCGGAAAGGTCATTGGAAACAAATGGGATTCTTACCTTGACTTTCTTCAAGCTGATTACACTGAAGGAGATGCACTGGATGCTTTGGGGTTGGTCCGATATTGCTGCAGGCGTATGCTTATGACCCATGTTGACCTTATCGAGAAGCTACTGAATTACAATAGTAATTTCTGA

Protein sequence

>MsG0580025756.01.T01

MIIPVRCFTCGKVIGNKWDSYLDFLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNSNF*