Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680034187.01.T01 | XP_019453237.1 | 42.059 | 573 | 116 | 13 | 1 | 365 | 54 | 618 | 2.49E-113 | 360 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048461.01 | MsG0680034187.01 | 0.802782 | 4.763806e-49 | 2.354198e-46 |
| MsG0080048462.01 | MsG0680034187.01 | 0.806168 | 9.378125e-50 | 5.055417e-47 |
| MsG0080048856.01 | MsG0680034187.01 | 0.807306 | 5.392157e-50 | 2.993107e-47 |
| MsG0180000091.01 | MsG0680034187.01 | 0.819920 | 9.015991e-53 | 7.032253e-50 |
| MsG0180000145.01 | MsG0680034187.01 | 0.816938 | 4.271570e-52 | 3.068699e-49 |
| MsG0180000470.01 | MsG0680034187.01 | 0.806984 | 6.306377e-50 | 3.471344e-47 |
| MsG0180001892.01 | MsG0680034187.01 | 0.806020 | 1.007497e-49 | 5.410608e-47 |
| MsG0180003361.01 | MsG0680034187.01 | 0.800505 | 1.396794e-48 | 6.514755e-46 |
| MsG0180003455.01 | MsG0680034187.01 | 0.800924 | 1.146950e-48 | 5.406974e-46 |
| MsG0180005393.01 | MsG0680034187.01 | 0.800240 | 1.581416e-48 | 7.326452e-46 |
| MsG0280010698.01 | MsG0680034187.01 | 0.808234 | 3.422559e-50 | 1.946551e-47 |
| MsG0280011258.01 | MsG0680034187.01 | 0.822638 | 2.128751e-53 | 1.792055e-50 |
| MsG0280011282.01 | MsG0680034187.01 | 0.804234 | 2.382187e-49 | 1.221773e-46 |
| MsG0380014701.01 | MsG0680034187.01 | 0.813030 | 3.146640e-51 | 2.032184e-48 |
| MsG0680030949.01 | MsG0680034187.01 | 0.801140 | 1.036138e-48 | 4.911375e-46 |
| MsG0680034187.01 | MsG0680035692.01 | 0.801404 | 9.147876e-49 | 4.364936e-46 |
| MsG0680034187.01 | MsG0780036477.01 | 0.802552 | 5.315229e-49 | 2.611174e-46 |
| MsG0680034187.01 | MsG0780037054.01 | 0.807977 | 3.883671e-50 | 2.193763e-47 |
| MsG0680034187.01 | MsG0780038188.01 | 0.802173 | 6.362439e-49 | 3.095624e-46 |
| MsG0680034187.01 | MsG0780038386.01 | 0.804301 | 2.306581e-49 | 1.185117e-46 |
| MsG0680034187.01 | MsG0780038424.01 | 0.818085 | 2.356673e-52 | 1.746839e-49 |
| MsG0680034187.01 | MsG0780038602.01 | 0.806287 | 8.853186e-50 | 4.786796e-47 |
| MsG0680034187.01 | MsG0780038691.01 | 0.823592 | 1.274701e-53 | 1.102362e-50 |
| MsG0680034187.01 | MsG0780039170.01 | 0.812876 | 3.399751e-51 | 2.186624e-48 |
| MsG0680034187.01 | MsG0780039443.01 | 0.811414 | 7.085117e-51 | 4.383055e-48 |
| MsG0680034187.01 | MsG0780039655.01 | 0.837548 | 4.870108e-57 | 6.347737e-54 |
| MsG0680034187.01 | MsG0780039866.01 | 0.816442 | 5.518020e-52 | 3.910164e-49 |
| MsG0680034187.01 | MsG0780040044.01 | 0.802298 | 5.995226e-49 | 2.926433e-46 |
| MsG0680034187.01 | MsG0880042520.01 | 0.806981 | 6.316869e-50 | 3.476871e-47 |
| MsG0680034187.01 | MsG0880042698.01 | 0.815282 | 1.001122e-51 | 6.873028e-49 |
| MsG0680034187.01 | MsG0880042961.01 | 0.808736 | 2.675592e-50 | 1.541675e-47 |
| MsG0680034187.01 | MsG0880044554.01 | 0.806435 | 8.239730e-50 | 4.471878e-47 |
| MsG0680034187.01 | MsG0880045372.01 | 0.824431 | 8.102523e-54 | 7.175054e-51 |
| MsG0680034187.01 | MsG0880046264.01 | 0.812778 | 3.572548e-51 | 2.291793e-48 |
| MsG0480018465.01 | MsG0680034187.01 | 0.810802 | 9.616485e-51 | 5.853358e-48 |
| MsG0480019710.01 | MsG0680034187.01 | 0.813209 | 2.874490e-51 | 1.865368e-48 |
| MsG0480020780.01 | MsG0680034187.01 | 0.801001 | 1.106280e-48 | 5.225674e-46 |
| MsG0480023463.01 | MsG0680034187.01 | 0.806817 | 6.840644e-50 | 3.749323e-47 |
| MsG0580026075.01 | MsG0680034187.01 | 0.802281 | 6.043992e-49 | 2.948892e-46 |
| MsG0380015332.01 | MsG0680034187.01 | 0.814206 | 1.733904e-51 | 1.156088e-48 |
| MsG0380015677.01 | MsG0680034187.01 | 0.813109 | 3.022240e-51 | 1.955909e-48 |
| MsG0380016517.01 | MsG0680034187.01 | 0.819092 | 1.392308e-52 | 1.061201e-49 |
| MsG0380016994.01 | MsG0680034187.01 | 0.805034 | 1.621965e-49 | 8.492361e-47 |
| MsG0480018313.01 | MsG0680034187.01 | 0.804186 | 2.437327e-49 | 1.248562e-46 |
| MsG0580026610.01 | MsG0680034187.01 | 0.817459 | 3.261237e-52 | 2.376532e-49 |
| MsG0580027650.01 | MsG0680034187.01 | 0.809999 | 1.433425e-50 | 8.542071e-48 |
| MsG0580028176.01 | MsG0680034187.01 | 0.815305 | 9.898329e-52 | 6.799387e-49 |
| MsG0580029640.01 | MsG0680034187.01 | 0.807849 | 4.133421e-50 | 2.326964e-47 |
| MsG0680030447.01 | MsG0680034187.01 | 0.833587 | 4.894865e-56 | 5.662229e-53 |
| MsG0280007955.01 | MsG0680034187.01 | 0.803220 | 3.868618e-49 | 1.933167e-46 |
| MsG0280008363.01 | MsG0680034187.01 | 0.801780 | 7.660821e-49 | 3.690222e-46 |
| MsG0280008377.01 | MsG0680034187.01 | 0.825180 | 5.394779e-54 | 4.881674e-51 |
| MsG0280009794.01 | MsG0680034187.01 | 0.810490 | 1.123132e-50 | 6.779434e-48 |
| MsG0280010491.01 | MsG0680034187.01 | 0.825186 | 5.378302e-54 | 4.867529e-51 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680034187.01.T01 | AT1G62870 | 43.850 | 187 | 82 | 3 | 195 | 358 | 354 | 540 | 1.95e-39 | 150 |
| MsG0680034187.01.T01 | AT1G12380 | 40.777 | 206 | 80 | 4 | 195 | 358 | 367 | 572 | 8.22e-37 | 142 |
Find 102 sgRNAs with CRISPR-Local
Find 161 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCTAAGGCATTGAGGAATT+TGG | 0.155802 | 6:+82965509 | MsG0680034187.01.T01:CDS |
| GACACACCTTGAACCTATTT+TGG | 0.169286 | 6:+82964500 | MsG0680034187.01.T01:CDS |
| TCGGTCGATGTTTGCCTCTT+TGG | 0.179185 | 6:+82966003 | MsG0680034187.01.T01:CDS |
| GGTTCTGATTCTGGTGATTC+TGG | 0.189286 | 6:-82964877 | None:intergenic |
| GATTGTTGCTGATAAGTTTA+AGG | 0.205077 | 6:+82965488 | MsG0680034187.01.T01:CDS |
| TCGCTTGTGAAGATTATTAA+AGG | 0.212044 | 6:+82965945 | MsG0680034187.01.T01:CDS |
| GTGAATCCGAGGCGAAAATT+AGG | 0.220507 | 6:+82965204 | MsG0680034187.01.T01:CDS |
| AACTTGGCATTGGTTGAAAT+TGG | 0.232537 | 6:+82964809 | MsG0680034187.01.T01:CDS |
| TGTGATGGAGGACGCGTTTA+AGG | 0.241698 | 6:+82965836 | MsG0680034187.01.T01:CDS |
| GTTCCTATTTCGTCGGTTTC+CGG | 0.242596 | 6:+82964708 | MsG0680034187.01.T01:CDS |
| GATTCTGGTGATTCTGGTTC+TGG | 0.244168 | 6:-82964871 | None:intergenic |
| CGGTCGATGTTTGCCTCTTT+GGG | 0.248581 | 6:+82966004 | MsG0680034187.01.T01:CDS |
| TCAGGATTTCGAACCAAAAT+AGG | 0.250780 | 6:-82964513 | None:intergenic |
| TGTTCGAACCAAGCTGTTAA+AGG | 0.269309 | 6:+82964459 | MsG0680034187.01.T01:CDS |
| AATGATGCTGGTTCTGATTC+TGG | 0.288860 | 6:-82964886 | None:intergenic |
| TGTTTGAGACGCGAGGTTTC+CGG | 0.293572 | 6:+82965147 | MsG0680034187.01.T01:CDS |
| CAATCAGGTGCATGGTAATA+TGG | 0.311000 | 6:+82964835 | MsG0680034187.01.T01:CDS |
| AGAATGCAGGAGATGGAGTA+TGG | 0.315901 | 6:+82965704 | MsG0680034187.01.T01:intron |
| GAACCGGAAACCGACGAAAT+AGG | 0.316569 | 6:-82964711 | None:intergenic |
| CCAGCCACTTCTCTAGCATT+TGG | 0.320989 | 6:-82965876 | None:intergenic |
| CGCGTTTAAGGCAATGTTCA+TGG | 0.335480 | 6:+82965848 | MsG0680034187.01.T01:CDS |
| TTCTTCAATGGATCACATTT+CGG | 0.336783 | 6:-82965750 | None:intergenic |
| AAGGTAAGGTTGCATGGTAT+TGG | 0.349438 | 6:+82964478 | MsG0680034187.01.T01:CDS |
| GAAATAGGAACCGGTGAAAC+CGG | 0.375198 | 6:-82964696 | None:intergenic |
| GAAGTACCAGGTGAAGTCTT+AGG | 0.382034 | 6:-82964983 | None:intergenic |
| GATTATTAAAGGAATGGTTC+AGG | 0.407422 | 6:+82965956 | MsG0680034187.01.T01:CDS |
| AATACTTCTTGTCAGCTTCA+AGG | 0.424656 | 6:+82965555 | MsG0680034187.01.T01:CDS |
| CGTCGGTTTCCGGTTCGAAC+CGG | 0.425733 | 6:+82964718 | MsG0680034187.01.T01:CDS |
| TCGAACCGGAAAAGATCAAA+TGG | 0.428115 | 6:+82964732 | MsG0680034187.01.T01:CDS |
| TGAATCCGAGGCGAAAATTA+GGG | 0.434677 | 6:+82965205 | MsG0680034187.01.T01:CDS |
| CAGCATCATTTGATGTTGTC+TGG | 0.438103 | 6:+82964899 | MsG0680034187.01.T01:CDS |
| AGGGTTTGTTAGTTTAATCA+AGG | 0.438901 | 6:+82965575 | MsG0680034187.01.T01:CDS |
| GGTTGAAATTGGCTACAATC+AGG | 0.440625 | 6:+82964820 | MsG0680034187.01.T01:CDS |
| GATTCTGGTTCTGGTTCTGA+TGG | 0.447632 | 6:-82964862 | None:intergenic |
| ATGGTTCAGAATGAGGTGTT+TGG | 0.450813 | 6:+82965900 | MsG0680034187.01.T01:CDS |
| TGCTGATAAGTTTAAGGCTA+AGG | 0.450816 | 6:+82965494 | MsG0680034187.01.T01:CDS |
| CAACCTTACCTTTAACAGCT+TGG | 0.465115 | 6:-82964467 | None:intergenic |
| TCAAAATCATAACTTGGCAT+TGG | 0.468401 | 6:+82964799 | MsG0680034187.01.T01:CDS |
| CGGTTCAGTTCCGGTTTCAC+CGG | 0.471382 | 6:+82964686 | MsG0680034187.01.T01:intron |
| TTCGAACCAAAATAGGTTCA+AGG | 0.472511 | 6:-82964506 | None:intergenic |
| ACAGCAAGTTCTTCTGAACT+AGG | 0.477859 | 6:-82964400 | None:intergenic |
| TACTACACCACTCTTCACTT+TGG | 0.482633 | 6:-82966039 | None:intergenic |
| ATACTTCTTGTCAGCTTCAA+GGG | 0.488138 | 6:+82965556 | MsG0680034187.01.T01:CDS |
| AGTGATGGTTGGAAGAGTTA+TGG | 0.491295 | 6:+82965249 | MsG0680034187.01.T01:CDS |
| TGTGAAGATTATTAAAGGAA+TGG | 0.492323 | 6:+82965950 | MsG0680034187.01.T01:CDS |
| ATTTGGAGAATCAAAACCAT+TGG | 0.493435 | 6:+82965526 | MsG0680034187.01.T01:CDS |
| GTGTCTTTAATCAAGTAAAG+TGG | 0.493780 | 6:-82966157 | None:intergenic |
| TGCTAGAGAAGTGGCTGGAA+TGG | 0.497321 | 6:+82965881 | MsG0680034187.01.T01:CDS |
| GACGCGAGGTTTCCGGTCCA+AGG | 0.501975 | 6:+82965154 | MsG0680034187.01.T01:CDS |
| AGGAATGGTTCAGGATATAG+AGG | 0.509857 | 6:+82965965 | MsG0680034187.01.T01:CDS |
| ATTAAACTAGCATCGAGCCT+TGG | 0.518872 | 6:-82965171 | None:intergenic |
| GAACCAAGCTGTTAAAGGTA+AGG | 0.518929 | 6:+82964464 | MsG0680034187.01.T01:CDS |
| ACGGACGCAAAGTTCTTCAA+TGG | 0.521415 | 6:-82965762 | None:intergenic |
| ATCCTCAAGCATCGGAAACA+CGG | 0.525442 | 6:-82965781 | None:intergenic |
| AGTTCTTCTGAACTAGGAAG+TGG | 0.527984 | 6:-82964394 | None:intergenic |
| TAATTATAGAATGCAGGAGA+TGG | 0.530457 | 6:+82965697 | MsG0680034187.01.T01:intron |
| AAAAGATGATTTATGTGCAT+TGG | 0.530765 | 6:+82964925 | MsG0680034187.01.T01:CDS |
| ATAAATGCCGCTGACCATGC+AGG | 0.535049 | 6:-82966127 | None:intergenic |
| AAGAAGTATTTACCATCCAA+TGG | 0.543075 | 6:-82965542 | None:intergenic |
| TTCACCGGTTCCTATTTCGT+CGG | 0.543254 | 6:+82964701 | MsG0680034187.01.T01:CDS |
| GTCCGTGTTTCCGATGCTTG+AGG | 0.545204 | 6:+82965779 | MsG0680034187.01.T01:CDS |
| AGGAAGTGGTTCTGTTGAAG+TGG | 0.550236 | 6:-82964380 | None:intergenic |
| AATGGATCACATTTCGGCGA+AGG | 0.553301 | 6:-82965744 | None:intergenic |
| ACTAGCATCGAGCCTTGGAC+CGG | 0.559081 | 6:-82965166 | None:intergenic |
| CTGTTAAAGGTAAGGTTGCA+TGG | 0.562516 | 6:+82964472 | MsG0680034187.01.T01:CDS |
| GGAGAATCAAAACCATTGGA+TGG | 0.563446 | 6:+82965530 | MsG0680034187.01.T01:CDS |
| CCAAATGCTAGAGAAGTGGC+TGG | 0.568259 | 6:+82965876 | MsG0680034187.01.T01:CDS |
| AGTTTAAGGCTAAGGCATTG+AGG | 0.568636 | 6:+82965502 | MsG0680034187.01.T01:CDS |
| AGTGATTCAAATGGTTGTGA+TGG | 0.570710 | 6:+82965821 | MsG0680034187.01.T01:CDS |
| GAAACCGACGAAATAGGAAC+CGG | 0.572847 | 6:-82964705 | None:intergenic |
| GCAGGAGATGGAGTATGGGC+GGG | 0.575699 | 6:+82965709 | MsG0680034187.01.T01:CDS |
| CGAACCGGAAAAGATCAAAT+GGG | 0.576735 | 6:+82964733 | MsG0680034187.01.T01:CDS |
| GTTCTCATCTCCTCCCAAAG+AGG | 0.577317 | 6:-82966017 | None:intergenic |
| TCGATGTTTGCCTCTTTGGG+AGG | 0.582539 | 6:+82966007 | MsG0680034187.01.T01:CDS |
| GGCAAACATCGACCGATCAA+CGG | 0.584073 | 6:-82965996 | None:intergenic |
| CTCAAAATATCCTCAAGCAT+CGG | 0.586264 | 6:-82965789 | None:intergenic |
| GGCTGGAATGGTTCAGAATG+AGG | 0.587957 | 6:+82965893 | MsG0680034187.01.T01:CDS |
| TGCAGGAGATGGAGTATGGG+CGG | 0.588081 | 6:+82965708 | MsG0680034187.01.T01:CDS |
| CAGACAACATCAAATGATGC+TGG | 0.597229 | 6:-82964898 | None:intergenic |
| AGTAAATACAATGTTGTCGA+AGG | 0.600223 | 6:+82966058 | MsG0680034187.01.T01:CDS |
| AAAACTTAATGATGATGGTG+AGG | 0.604343 | 6:-82964777 | None:intergenic |
| TAAATGCCGCTGACCATGCA+GGG | 0.606286 | 6:-82966126 | None:intergenic |
| AGAATGAGGTGTTTGGAACG+AGG | 0.606433 | 6:+82965907 | MsG0680034187.01.T01:CDS |
| GATTCAAATGGTTGTGATGG+AGG | 0.614297 | 6:+82965824 | MsG0680034187.01.T01:CDS |
| AGCAGTTAACAAACGATACG+AGG | 0.616160 | 6:+82964426 | MsG0680034187.01.T01:CDS |
| GAGGCGGAGAGGCCGTTGAT+CGG | 0.616983 | 6:+82965984 | MsG0680034187.01.T01:CDS |
| TGTTTGGAACGAGGTTGAAG+CGG | 0.617946 | 6:+82965916 | MsG0680034187.01.T01:CDS |
| CAATGTTGTCGAAGGACCAG+TGG | 0.618270 | 6:+82966066 | MsG0680034187.01.T01:CDS |
| AGGAAGTTGTTTGAGACGCG+AGG | 0.625523 | 6:+82965140 | MsG0680034187.01.T01:intron |
| GGATCCAAATGCTAGAGAAG+TGG | 0.625781 | 6:+82965872 | MsG0680034187.01.T01:CDS |
| CTGTGCTAGAGTGATTCAAA+TGG | 0.626672 | 6:+82965812 | MsG0680034187.01.T01:CDS |
| ATTGGCTACAATCAGGTGCA+TGG | 0.626721 | 6:+82964827 | MsG0680034187.01.T01:CDS |
| GAATGCAGGAGATGGAGTAT+GGG | 0.628163 | 6:+82965705 | MsG0680034187.01.T01:intron |
| AAGAGTCCTAAGACTTCACC+TGG | 0.630400 | 6:+82964977 | MsG0680034187.01.T01:CDS |
| CATCATTTGATGTTGTCTGG+TGG | 0.636248 | 6:+82964902 | MsG0680034187.01.T01:CDS |
| ATGAGAACCAAAGTGAAGAG+TGG | 0.648603 | 6:+82966032 | MsG0680034187.01.T01:CDS |
| CTATCACCCTGCATGGTCAG+CGG | 0.650930 | 6:+82966120 | MsG0680034187.01.T01:CDS |
| TGAAGTTAAGAGTGAATCCG+AGG | 0.651148 | 6:+82965193 | MsG0680034187.01.T01:CDS |
| AATGGTTCAGGATATAGAGG+CGG | 0.695270 | 6:+82965968 | MsG0680034187.01.T01:CDS |
| TTCAGGATATAGAGGCGGAG+AGG | 0.697045 | 6:+82965973 | MsG0680034187.01.T01:CDS |
| GCAGTTAACAAACGATACGA+GGG | 0.704487 | 6:+82964427 | MsG0680034187.01.T01:CDS |
| GTTTAAGGCAATGTTCATGG+AGG | 0.722672 | 6:+82965851 | MsG0680034187.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTAGTAATTATAATAATGAT+AGG | + | Chr6:82965280-82965299 | MsG0680034187.01.T01:intron | 15.0% |
| !!! | AAGTTTTCAAAATCATAACT+TGG | + | Chr6:82964793-82964812 | MsG0680034187.01.T01:CDS | 20.0% |
| !!! | ATGTTCAATTTTAACAATTC+TGG | + | Chr6:82964642-82964661 | MsG0680034187.01.T01:intron | 20.0% |
| !!! | TTTTGAAAACTTAATGATGA+TGG | - | Chr6:82964785-82964804 | None:intergenic | 20.0% |
| !!! | TTTTGTTAATTATAGAATGC+AGG | + | Chr6:82965691-82965710 | MsG0680034187.01.T01:intron | 20.0% |
| ! | AAAAGATGATTTATGTGCAT+TGG | + | Chr6:82964925-82964944 | MsG0680034187.01.T01:CDS | 25.0% |
| ! | AATAATGATAGGAGTTTGTA+TGG | + | Chr6:82965291-82965310 | MsG0680034187.01.T01:intron | 25.0% |
| ! | TCACTATACTTGAAAAAACA+TGG | - | Chr6:82965234-82965253 | None:intergenic | 25.0% |
| ! | TGTGAAGATTATTAAAGGAA+TGG | + | Chr6:82965950-82965969 | MsG0680034187.01.T01:CDS | 25.0% |
| !! | TTTTATAGACAATGAATCTC+AGG | + | Chr6:82965658-82965677 | MsG0680034187.01.T01:intron | 25.0% |
| !!! | TGTTTTTTCAAGTATAGTGA+TGG | + | Chr6:82965234-82965253 | MsG0680034187.01.T01:CDS | 25.0% |
| AAATACTCGAAAAACGGTTT+CGG | + | Chr6:82966092-82966111 | MsG0680034187.01.T01:CDS | 30.0% | |
| AGTAAATACAATGTTGTCGA+AGG | + | Chr6:82966058-82966077 | MsG0680034187.01.T01:CDS | 30.0% | |
| ATTTGGAGAATCAAAACCAT+TGG | + | Chr6:82965526-82965545 | MsG0680034187.01.T01:CDS | 30.0% | |
| GATTATTAAAGGAATGGTTC+AGG | + | Chr6:82965956-82965975 | MsG0680034187.01.T01:CDS | 30.0% | |
| GATTGTTGCTGATAAGTTTA+AGG | + | Chr6:82965488-82965507 | MsG0680034187.01.T01:CDS | 30.0% | |
| TAATTATAGAATGCAGGAGA+TGG | + | Chr6:82965697-82965716 | MsG0680034187.01.T01:intron | 30.0% | |
| TACTTCTTTGAGTAAAGAAC+AGG | + | Chr6:82965000-82965019 | MsG0680034187.01.T01:intron | 30.0% | |
| TCAAAATCATAACTTGGCAT+TGG | + | Chr6:82964799-82964818 | MsG0680034187.01.T01:CDS | 30.0% | |
| TCGCTTGTGAAGATTATTAA+AGG | + | Chr6:82965945-82965964 | MsG0680034187.01.T01:CDS | 30.0% | |
| TGAGAGTTTGGTTAAGTTTA+TGG | + | Chr6:82965328-82965347 | MsG0680034187.01.T01:intron | 30.0% | |
| TGGAGAAAATACTCGAAAAA+CGG | + | Chr6:82966086-82966105 | MsG0680034187.01.T01:CDS | 30.0% | |
| TTATGGTGAATCTACCAAAT+GGG | + | Chr6:82965345-82965364 | MsG0680034187.01.T01:intron | 30.0% | |
| TTCTTCAATGGATCACATTT+CGG | - | Chr6:82965753-82965772 | None:intergenic | 30.0% | |
| TTTATGGTGAATCTACCAAA+TGG | + | Chr6:82965344-82965363 | MsG0680034187.01.T01:intron | 30.0% | |
| ! | TTGTTGTTAAAATCTGAACC+CGG | + | Chr6:82964666-82964685 | MsG0680034187.01.T01:intron | 30.0% |
| !! | AAAACTTAATGATGATGGTG+AGG | - | Chr6:82964780-82964799 | None:intergenic | 30.0% |
| !! | AAGAAGTATTTACCATCCAA+TGG | - | Chr6:82965545-82965564 | None:intergenic | 30.0% |
| !! | AGGGTTTGTTAGTTTAATCA+AGG | + | Chr6:82965575-82965594 | MsG0680034187.01.T01:CDS | 30.0% |
| !!! | GATTGGTTTTATGAATGTTG+TGG | + | Chr6:82965049-82965068 | MsG0680034187.01.T01:intron | 30.0% |
| !!! | TTTTCAAGTATAGTGATGGT+TGG | + | Chr6:82965238-82965257 | MsG0680034187.01.T01:CDS | 30.0% |
| AATACTTCTTGTCAGCTTCA+AGG | + | Chr6:82965555-82965574 | MsG0680034187.01.T01:CDS | 35.0% | |
| AGTGATTCAAATGGTTGTGA+TGG | + | Chr6:82965821-82965840 | MsG0680034187.01.T01:CDS | 35.0% | |
| ATACTTCTTGTCAGCTTCAA+GGG | + | Chr6:82965556-82965575 | MsG0680034187.01.T01:CDS | 35.0% | |
| CTCAAAATATCCTCAAGCAT+CGG | - | Chr6:82965792-82965811 | None:intergenic | 35.0% | |
| TCAGGATTTCGAACCAAAAT+AGG | - | Chr6:82964516-82964535 | None:intergenic | 35.0% | |
| TTCAAAACACTACTCCCATT+TGG | - | Chr6:82965362-82965381 | None:intergenic | 35.0% | |
| TTCGAACCAAAATAGGTTCA+AGG | - | Chr6:82964509-82964528 | None:intergenic | 35.0% | |
| TTTGAAAAAGCGGTGTTTAC+CGG | + | Chr6:82965376-82965395 | MsG0680034187.01.T01:intron | 35.0% | |
| ! | AACTCCCATTTGATCTTTTC+CGG | - | Chr6:82964740-82964759 | None:intergenic | 35.0% |
| ! | AGTGTTGTTCAAAGATGTGT+AGG | + | Chr6:82965465-82965484 | MsG0680034187.01.T01:intron | 35.0% |
| ! | CTTTGGATTTACTTGCTGAT+TGG | + | Chr6:82965032-82965051 | MsG0680034187.01.T01:intron | 35.0% |
| ! | GTGTTGTTCAAAGATGTGTA+GGG | + | Chr6:82965466-82965485 | MsG0680034187.01.T01:intron | 35.0% |
| ! | TCAAGCTTTTCTTCTCAAGT+TGG | + | Chr6:82965108-82965127 | MsG0680034187.01.T01:intron | 35.0% |
| ! | TGCTGATAAGTTTAAGGCTA+AGG | + | Chr6:82965494-82965513 | MsG0680034187.01.T01:CDS | 35.0% |
| !! | AACTTGGCATTGGTTGAAAT+TGG | + | Chr6:82964809-82964828 | MsG0680034187.01.T01:CDS | 35.0% |
| !! | TCTTTACTCAAAGAAGTACC+AGG | - | Chr6:82964998-82965017 | None:intergenic | 35.0% |
| !!! | GAGTTTGTATGGTTTTGTTG+TGG | + | Chr6:82965302-82965321 | MsG0680034187.01.T01:intron | 35.0% |
| !!! | GGAGTAGTGTTTTGAAAAAG+CGG | + | Chr6:82965366-82965385 | MsG0680034187.01.T01:intron | 35.0% |
| !!! | TTTGTATGGTTTTGTTGTGG+TGG | + | Chr6:82965305-82965324 | MsG0680034187.01.T01:intron | 35.0% |
| !!! | TTTTCGAGTATTTTCTCCAC+TGG | - | Chr6:82966085-82966104 | None:intergenic | 35.0% |
| AAGGTAAGGTTGCATGGTAT+TGG | + | Chr6:82964478-82964497 | MsG0680034187.01.T01:CDS | 40.0% | |
| AATGGTTCAGGATATAGAGG+CGG | + | Chr6:82965968-82965987 | MsG0680034187.01.T01:CDS | 40.0% | |
| ACAGCAAGTTCTTCTGAACT+AGG | - | Chr6:82964403-82964422 | None:intergenic | 40.0% | |
| AGAACAGGTGAATTCTGCTT+TGG | + | Chr6:82965015-82965034 | MsG0680034187.01.T01:intron | 40.0% | |
| AGCAGTTAACAAACGATACG+AGG | + | Chr6:82964426-82964445 | MsG0680034187.01.T01:CDS | 40.0% | |
| AGGAATGGTTCAGGATATAG+AGG | + | Chr6:82965965-82965984 | MsG0680034187.01.T01:CDS | 40.0% | |
| AGTGATGGTTGGAAGAGTTA+TGG | + | Chr6:82965249-82965268 | MsG0680034187.01.T01:CDS | 40.0% | |
| AGTTCTTCTGAACTAGGAAG+TGG | - | Chr6:82964397-82964416 | None:intergenic | 40.0% | |
| ATGAGAACCAAAGTGAAGAG+TGG | + | Chr6:82966032-82966051 | MsG0680034187.01.T01:CDS | 40.0% | |
| CAACCTTACCTTTAACAGCT+TGG | - | Chr6:82964470-82964489 | None:intergenic | 40.0% | |
| CAATCAGGTGCATGGTAATA+TGG | + | Chr6:82964835-82964854 | MsG0680034187.01.T01:CDS | 40.0% | |
| CAGACAACATCAAATGATGC+TGG | - | Chr6:82964901-82964920 | None:intergenic | 40.0% | |
| CAGCATCATTTGATGTTGTC+TGG | + | Chr6:82964899-82964918 | MsG0680034187.01.T01:CDS | 40.0% | |
| CATCATTTGATGTTGTCTGG+TGG | + | Chr6:82964902-82964921 | MsG0680034187.01.T01:CDS | 40.0% | |
| CGAACCGGAAAAGATCAAAT+GGG | + | Chr6:82964733-82964752 | MsG0680034187.01.T01:CDS | 40.0% | |
| CTGTGCTAGAGTGATTCAAA+TGG | + | Chr6:82965812-82965831 | MsG0680034187.01.T01:CDS | 40.0% | |
| CTGTTAAAGGTAAGGTTGCA+TGG | + | Chr6:82964472-82964491 | MsG0680034187.01.T01:CDS | 40.0% | |
| GAACCAAGCTGTTAAAGGTA+AGG | + | Chr6:82964464-82964483 | MsG0680034187.01.T01:CDS | 40.0% | |
| GATTCAAATGGTTGTGATGG+AGG | + | Chr6:82965824-82965843 | MsG0680034187.01.T01:CDS | 40.0% | |
| GCAGTTAACAAACGATACGA+GGG | + | Chr6:82964427-82964446 | MsG0680034187.01.T01:CDS | 40.0% | |
| GGAGAATCAAAACCATTGGA+TGG | + | Chr6:82965530-82965549 | MsG0680034187.01.T01:CDS | 40.0% | |
| GGTTGAAATTGGCTACAATC+AGG | + | Chr6:82964820-82964839 | MsG0680034187.01.T01:CDS | 40.0% | |
| TACTACACCACTCTTCACTT+TGG | - | Chr6:82966042-82966061 | None:intergenic | 40.0% | |
| TAGACAATGAATCTCAGGTG+AGG | + | Chr6:82965663-82965682 | MsG0680034187.01.T01:intron | 40.0% | |
| TCGAACCGGAAAAGATCAAA+TGG | + | Chr6:82964732-82964751 | MsG0680034187.01.T01:CDS | 40.0% | |
| TGAAGTTAAGAGTGAATCCG+AGG | + | Chr6:82965193-82965212 | MsG0680034187.01.T01:CDS | 40.0% | |
| TGAATCCGAGGCGAAAATTA+GGG | + | Chr6:82965205-82965224 | MsG0680034187.01.T01:CDS | 40.0% | |
| TGTTCGAACCAAGCTGTTAA+AGG | + | Chr6:82964459-82964478 | MsG0680034187.01.T01:CDS | 40.0% | |
| ! | AACAACGAGCTCGAACTTTT+CGG | + | Chr6:82965603-82965622 | MsG0680034187.01.T01:CDS | 40.0% |
| ! | AAGTATGCTGAGGAGGTTTT+GGG | + | Chr6:82965418-82965437 | MsG0680034187.01.T01:intron | 40.0% |
| ! | ATGGTTCAGAATGAGGTGTT+TGG | + | Chr6:82965900-82965919 | MsG0680034187.01.T01:CDS | 40.0% |
| ! | ATTAAACTAGCATCGAGCCT+TGG | - | Chr6:82965174-82965193 | None:intergenic | 40.0% |
| ! | GACACACCTTGAACCTATTT+TGG | + | Chr6:82964500-82964519 | MsG0680034187.01.T01:CDS | 40.0% |
| ! | GTTTAAGGCAATGTTCATGG+AGG | + | Chr6:82965851-82965870 | MsG0680034187.01.T01:CDS | 40.0% |
| ! | TTGGTTCGAAATCCTGATAC+TGG | + | Chr6:82964519-82964538 | MsG0680034187.01.T01:intron | 40.0% |
| !! | AATGATGCTGGTTCTGATTC+TGG | - | Chr6:82964889-82964908 | None:intergenic | 40.0% |
| !! | AGTTTAAGGCTAAGGCATTG+AGG | + | Chr6:82965502-82965521 | MsG0680034187.01.T01:CDS | 40.0% |
| !! | GTTCTGAAGCTGTTCTTGAA+GGG | - | Chr6:82964606-82964625 | None:intergenic | 40.0% |
| !! | TGTTCTGAAGCTGTTCTTGA+AGG | - | Chr6:82964607-82964626 | None:intergenic | 40.0% |
| AAGAGTCCTAAGACTTCACC+TGG | + | Chr6:82964977-82964996 | MsG0680034187.01.T01:CDS | 45.0% | |
| AATGGATCACATTTCGGCGA+AGG | - | Chr6:82965747-82965766 | None:intergenic | 45.0% | |
| ACGGACGCAAAGTTCTTCAA+TGG | - | Chr6:82965765-82965784 | None:intergenic | 45.0% | |
| AGAATGCAGGAGATGGAGTA+TGG | + | Chr6:82965704-82965723 | MsG0680034187.01.T01:intron | 45.0% | |
| ATTGGCTACAATCAGGTGCA+TGG | + | Chr6:82964827-82964846 | MsG0680034187.01.T01:CDS | 45.0% | |
| CGTCTCAAACAACTTCCTAC+AGG | - | Chr6:82965138-82965157 | None:intergenic | 45.0% | |
| GAAACCGACGAAATAGGAAC+CGG | - | Chr6:82964708-82964727 | None:intergenic | 45.0% | |
| GAAATAGGAACCGGTGAAAC+CGG | - | Chr6:82964699-82964718 | None:intergenic | 45.0% | |
| GAATGCAGGAGATGGAGTAT+GGG | + | Chr6:82965705-82965724 | MsG0680034187.01.T01:intron | 45.0% | |
| GAATTCGAAGTATGCTGAGG+AGG | + | Chr6:82965411-82965430 | MsG0680034187.01.T01:intron | 45.0% | |
| GATTTAGCGAGACCAGTATC+AGG | - | Chr6:82964534-82964553 | None:intergenic | 45.0% | |
| GCTTCAGAACATCTCAAACG+TGG | + | Chr6:82964616-82964635 | MsG0680034187.01.T01:intron | 45.0% | |
| GGAAAAACTATCACCCTGCA+TGG | + | Chr6:82966113-82966132 | MsG0680034187.01.T01:CDS | 45.0% | |
| GGATCCAAATGCTAGAGAAG+TGG | + | Chr6:82965872-82965891 | MsG0680034187.01.T01:CDS | 45.0% | |
| GGTGAATTCGAAGTATGCTG+AGG | + | Chr6:82965408-82965427 | MsG0680034187.01.T01:intron | 45.0% | |
| GTGAATCCGAGGCGAAAATT+AGG | + | Chr6:82965204-82965223 | MsG0680034187.01.T01:CDS | 45.0% | |
| ! | AGAATGAGGTGTTTGGAACG+AGG | + | Chr6:82965907-82965926 | MsG0680034187.01.T01:CDS | 45.0% |
| ! | AGGAAGTGGTTCTGTTGAAG+TGG | - | Chr6:82964383-82964402 | None:intergenic | 45.0% |
| ! | AGTATGCTGAGGAGGTTTTG+GGG | + | Chr6:82965419-82965438 | MsG0680034187.01.T01:intron | 45.0% |
| ! | CGCGTTTAAGGCAATGTTCA+TGG | + | Chr6:82965848-82965867 | MsG0680034187.01.T01:CDS | 45.0% |
| ! | GAAGTACCAGGTGAAGTCTT+AGG | - | Chr6:82964986-82965005 | None:intergenic | 45.0% |
| ! | GAAGTATGCTGAGGAGGTTT+TGG | + | Chr6:82965417-82965436 | MsG0680034187.01.T01:intron | 45.0% |
| ! | GGTTCTGATTCTGGTGATTC+TGG | - | Chr6:82964880-82964899 | None:intergenic | 45.0% |
| ! | TGTTTGGAACGAGGTTGAAG+CGG | + | Chr6:82965916-82965935 | MsG0680034187.01.T01:CDS | 45.0% |
| ! | TTGTTGTGGTGGTGAGAGTT+TGG | + | Chr6:82965316-82965335 | MsG0680034187.01.T01:intron | 45.0% |
| !! | ATCCTCAAGCATCGGAAACA+CGG | - | Chr6:82965784-82965803 | None:intergenic | 45.0% |
| !! | GATTCTGGTGATTCTGGTTC+TGG | - | Chr6:82964874-82964893 | None:intergenic | 45.0% |
| !! | GATTCTGGTTCTGGTTCTGA+TGG | - | Chr6:82964865-82964884 | None:intergenic | 45.0% |
| !! | GGCTAAGGCATTGAGGAATT+TGG | + | Chr6:82965509-82965528 | MsG0680034187.01.T01:CDS | 45.0% |
| !! | GTTCCTATTTCGTCGGTTTC+CGG | + | Chr6:82964708-82964727 | MsG0680034187.01.T01:CDS | 45.0% |
| !! | TCTCAAGTTGGTTTGCCTGT+AGG | + | Chr6:82965120-82965139 | MsG0680034187.01.T01:intron | 45.0% |
| !! | TGATCTTTTCCGGTTCGAAC+CGG | - | Chr6:82964730-82964749 | None:intergenic | 45.0% |
| !! | TTCACCGGTTCCTATTTCGT+CGG | + | Chr6:82964701-82964720 | MsG0680034187.01.T01:CDS | 45.0% |
| AAAAAGCGGTGTTTACCGGC+GGG | + | Chr6:82965380-82965399 | MsG0680034187.01.T01:intron | 50.0% | |
| ATAAATGCCGCTGACCATGC+AGG | - | Chr6:82966130-82966149 | None:intergenic | 50.0% | |
| ATCTGAACCCGGTTCAGTTC+CGG | + | Chr6:82964677-82964696 | MsG0680034187.01.T01:intron | 50.0% | |
| CAATGTTGTCGAAGGACCAG+TGG | + | Chr6:82966066-82966085 | MsG0680034187.01.T01:CDS | 50.0% | |
| CCAAATGCTAGAGAAGTGGC+TGG | + | Chr6:82965876-82965895 | MsG0680034187.01.T01:CDS | 50.0% | |
| CCAGCCACTTCTCTAGCATT+TGG | - | Chr6:82965879-82965898 | None:intergenic | 50.0% | |
| CGGTCGATGTTTGCCTCTTT+GGG | + | Chr6:82966004-82966023 | MsG0680034187.01.T01:CDS | 50.0% | |
| GAAAAAGCGGTGTTTACCGG+CGG | + | Chr6:82965379-82965398 | MsG0680034187.01.T01:intron | 50.0% | |
| GAACCGGAAACCGACGAAAT+AGG | - | Chr6:82964714-82964733 | None:intergenic | 50.0% | |
| GGCAAACATCGACCGATCAA+CGG | - | Chr6:82965999-82966018 | None:intergenic | 50.0% | |
| GGCTGGAATGGTTCAGAATG+AGG | + | Chr6:82965893-82965912 | MsG0680034187.01.T01:CDS | 50.0% | |
| GTTCTCATCTCCTCCCAAAG+AGG | - | Chr6:82966020-82966039 | None:intergenic | 50.0% | |
| TAAATGCCGCTGACCATGCA+GGG | - | Chr6:82966129-82966148 | None:intergenic | 50.0% | |
| TCGATGTTTGCCTCTTTGGG+AGG | + | Chr6:82966007-82966026 | MsG0680034187.01.T01:CDS | 50.0% | |
| TCGGTCGATGTTTGCCTCTT+TGG | + | Chr6:82966003-82966022 | MsG0680034187.01.T01:CDS | 50.0% | |
| TGCTAGAGAAGTGGCTGGAA+TGG | + | Chr6:82965881-82965900 | MsG0680034187.01.T01:CDS | 50.0% | |
| TTCAGGATATAGAGGCGGAG+AGG | + | Chr6:82965973-82965992 | MsG0680034187.01.T01:CDS | 50.0% | |
| ! | AGGAAGTTGTTTGAGACGCG+AGG | + | Chr6:82965140-82965159 | MsG0680034187.01.T01:intron | 50.0% |
| ! | GAGACTGTGACTGGTGTTAG+TGG | + | Chr6:82965441-82965460 | MsG0680034187.01.T01:intron | 50.0% |
| ! | GGCATCCCTAATTTTCGCCT+CGG | - | Chr6:82965213-82965232 | None:intergenic | 50.0% |
| ! | TGTGATGGAGGACGCGTTTA+AGG | + | Chr6:82965836-82965855 | MsG0680034187.01.T01:CDS | 50.0% |
| ! | TGTTTGAGACGCGAGGTTTC+CGG | + | Chr6:82965147-82965166 | MsG0680034187.01.T01:CDS | 50.0% |
| AAAAGCGGTGTTTACCGGCG+GGG | + | Chr6:82965381-82965400 | MsG0680034187.01.T01:intron | 55.0% | |
| CGGTGAAACCGGAACTGAAC+CGG | - | Chr6:82964688-82964707 | None:intergenic | 55.0% | |
| CGGTTCAGTTCCGGTTTCAC+CGG | + | Chr6:82964686-82964705 | MsG0680034187.01.T01:intron | 55.0% | |
| CTATCACCCTGCATGGTCAG+CGG | + | Chr6:82966120-82966139 | MsG0680034187.01.T01:CDS | 55.0% | |
| GGTGAAACCGGAACTGAACC+GGG | - | Chr6:82964687-82964706 | None:intergenic | 55.0% | |
| GTCCGTGTTTCCGATGCTTG+AGG | + | Chr6:82965779-82965798 | MsG0680034187.01.T01:CDS | 55.0% | |
| TGCAGGAGATGGAGTATGGG+CGG | + | Chr6:82965708-82965727 | MsG0680034187.01.T01:CDS | 55.0% | |
| ! | ACTAGCATCGAGCCTTGGAC+CGG | - | Chr6:82965169-82965188 | None:intergenic | 55.0% |
| !!! | GGTTTTGGGGAGACTGTGAC+TGG | + | Chr6:82965432-82965451 | MsG0680034187.01.T01:intron | 55.0% |
| AAAGCGGTGTTTACCGGCGG+GGG | + | Chr6:82965382-82965401 | MsG0680034187.01.T01:intron | 60.0% | |
| GCAGGAGATGGAGTATGGGC+GGG | + | Chr6:82965709-82965728 | MsG0680034187.01.T01:CDS | 60.0% | |
| !! | CGTCGGTTTCCGGTTCGAAC+CGG | + | Chr6:82964718-82964737 | MsG0680034187.01.T01:CDS | 60.0% |
| CGAATTCACCACTCCCCCGC+CGG | - | Chr6:82965398-82965417 | None:intergenic | 65.0% | |
| GACGCGAGGTTTCCGGTCCA+AGG | + | Chr6:82965154-82965173 | MsG0680034187.01.T01:CDS | 65.0% | |
| GAGGCGGAGAGGCCGTTGAT+CGG | + | Chr6:82965984-82966003 | MsG0680034187.01.T01:CDS | 65.0% | |
| GGTGTTTACCGGCGGGGGAG+TGG | + | Chr6:82965387-82965406 | MsG0680034187.01.T01:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr6 | gene | 82964364 | 82966169 | 82964364 | ID=MsG0680034187.01;Name=MsG0680034187.01 |
| Chr6 | mRNA | 82964364 | 82966169 | 82964364 | ID=MsG0680034187.01.T01;Parent=MsG0680034187.01;Name=MsG0680034187.01.T01;_AED=0.32;_eAED=0.32;_QI=0|0|0|1|1|1|5|0|397 |
| Chr6 | exon | 82964364 | 82964521 | 82964364 | ID=MsG0680034187.01.T01:exon:9430;Parent=MsG0680034187.01.T01 |
| Chr6 | exon | 82964694 | 82964998 | 82964694 | ID=MsG0680034187.01.T01:exon:9429;Parent=MsG0680034187.01.T01 |
| Chr6 | exon | 82965142 | 82965270 | 82965142 | ID=MsG0680034187.01.T01:exon:9428;Parent=MsG0680034187.01.T01 |
| Chr6 | exon | 82965487 | 82965624 | 82965487 | ID=MsG0680034187.01.T01:exon:9427;Parent=MsG0680034187.01.T01 |
| Chr6 | exon | 82965706 | 82966169 | 82965706 | ID=MsG0680034187.01.T01:exon:9426;Parent=MsG0680034187.01.T01 |
| Chr6 | CDS | 82964364 | 82964521 | 82964364 | ID=MsG0680034187.01.T01:cds;Parent=MsG0680034187.01.T01 |
| Chr6 | CDS | 82964694 | 82964998 | 82964694 | ID=MsG0680034187.01.T01:cds;Parent=MsG0680034187.01.T01 |
| Chr6 | CDS | 82965142 | 82965270 | 82965142 | ID=MsG0680034187.01.T01:cds;Parent=MsG0680034187.01.T01 |
| Chr6 | CDS | 82965487 | 82965624 | 82965487 | ID=MsG0680034187.01.T01:cds;Parent=MsG0680034187.01.T01 |
| Chr6 | CDS | 82965706 | 82966169 | 82965706 | ID=MsG0680034187.01.T01:cds;Parent=MsG0680034187.01.T01 |
| Gene Sequence |
| Protein sequence |
