Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780037964.01.T01 | XP_016566696.1 | 73.95 | 119 | 17 | 2 | 15 | 133 | 16 | 120 | 3.25E-54 | 178 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780037964.01.T01 | P42749 | 70.588 | 119 | 21 | 3 | 15 | 133 | 16 | 120 | 3.44E-52 | 166 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780037964.01.T01 | A0A1U8G5S0 | 73.950 | 119 | 17 | 2 | 15 | 133 | 16 | 120 | 1.55e-54 | 178 |
| MsG0780037964.01.T01 | A0A2G3ADQ5 | 73.950 | 119 | 17 | 2 | 15 | 133 | 16 | 120 | 1.55e-54 | 178 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180000470.01 | MsG0780037964.01 | 0.807779 | 4.277455e-50 | 2.403748e-47 |
| MsG0180002842.01 | MsG0780037964.01 | 0.806461 | 8.134649e-50 | 4.417994e-47 |
| MsG0180004926.01 | MsG0780037964.01 | 0.807211 | 5.646851e-50 | 3.126723e-47 |
| MsG0180006054.01 | MsG0780037964.01 | 0.819619 | 1.055893e-52 | 8.166196e-50 |
| MsG0280010722.01 | MsG0780037964.01 | 0.810914 | 9.096769e-51 | 5.553805e-48 |
| MsG0280010807.01 | MsG0780037964.01 | 0.814118 | 1.813361e-51 | 1.206200e-48 |
| MsG0280010916.01 | MsG0780037964.01 | 0.810744 | 9.900793e-51 | 6.017101e-48 |
| MsG0380012067.01 | MsG0780037964.01 | 0.800189 | 1.619935e-48 | 7.495181e-46 |
| MsG0480018653.01 | MsG0780037964.01 | 0.824492 | 7.838794e-54 | 6.953968e-51 |
| MsG0480018883.01 | MsG0780037964.01 | 0.805104 | 1.568205e-49 | 8.225736e-47 |
| MsG0480020765.01 | MsG0780037964.01 | 0.807865 | 4.102441e-50 | 2.310441e-47 |
| MsG0480020832.01 | MsG0780037964.01 | 0.820451 | 6.813036e-53 | 5.393010e-50 |
| MsG0480021918.01 | MsG0780037964.01 | 0.823844 | 1.112635e-53 | 9.691336e-51 |
| MsG0480021925.01 | MsG0780037964.01 | 0.810621 | 1.052439e-50 | 6.375061e-48 |
| MsG0480022068.01 | MsG0780037964.01 | 0.808118 | 3.623311e-50 | 2.054391e-47 |
| MsG0480023251.01 | MsG0780037964.01 | 0.808349 | 3.236140e-50 | 1.846085e-47 |
| MsG0480023488.01 | MsG0780037964.01 | 0.827446 | 1.557719e-54 | 1.504250e-51 |
| MsG0580024038.01 | MsG0780037964.01 | 0.805813 | 1.113617e-49 | 5.948753e-47 |
| MsG0580024363.01 | MsG0780037964.01 | -0.803562 | 3.284937e-49 | 1.656147e-46 |
| MsG0580025407.01 | MsG0780037964.01 | -0.812613 | 3.881506e-51 | 2.479380e-48 |
| MsG0380015131.01 | MsG0780037964.01 | 0.802033 | 6.797909e-49 | 3.295717e-46 |
| MsG0380015589.01 | MsG0780037964.01 | 0.809311 | 2.014774e-50 | 1.178936e-47 |
| MsG0380016285.01 | MsG0780037964.01 | 0.814680 | 1.362020e-51 | 9.198855e-49 |
| MsG0380017048.01 | MsG0780037964.01 | 0.800741 | 1.250343e-48 | 5.866783e-46 |
| MsG0380018075.01 | MsG0780037964.01 | 0.801510 | 8.703354e-49 | 4.164010e-46 |
| MsG0480018183.01 | MsG0780037964.01 | 0.813697 | 2.244829e-51 | 1.476313e-48 |
| MsG0480018236.01 | MsG0780037964.01 | 0.832180 | 1.095306e-55 | 1.214870e-52 |
| MsG0580029925.01 | MsG0780037964.01 | 0.807508 | 4.883961e-50 | 2.725351e-47 |
| MsG0280007955.01 | MsG0780037964.01 | 0.809042 | 2.300193e-50 | 1.336317e-47 |
| MsG0280010349.01 | MsG0780037964.01 | 0.802899 | 4.506285e-49 | 2.233543e-46 |
| MsG0280010350.01 | MsG0780037964.01 | 0.808213 | 3.458651e-50 | 1.965990e-47 |
| MsG0780037964.01 | MsG0780037965.01 | 0.815250 | 1.017759e-51 | 6.980482e-49 |
| MsG0780037964.01 | MsG0780038439.01 | 0.817776 | 2.766899e-52 | 2.033801e-49 |
| MsG0780037964.01 | MsG0780039178.01 | 0.820687 | 6.012396e-53 | 4.789998e-50 |
| MsG0780037964.01 | MsG0880041861.01 | 0.825881 | 3.679510e-54 | 3.396687e-51 |
| MsG0780037964.01 | MsG0880041863.01 | 0.807616 | 4.633439e-50 | 2.592630e-47 |
| MsG0780037964.01 | MsG0880041864.01 | 0.806752 | 7.063052e-50 | 3.864537e-47 |
| MsG0780037964.01 | MsG0880043157.01 | 0.804408 | 2.190985e-49 | 1.128777e-46 |
| MsG0780037964.01 | MsG0880043941.01 | 0.823795 | 1.142379e-53 | 9.936937e-51 |
| MsG0780037964.01 | MsG0880043942.01 | 0.806557 | 7.762936e-50 | 4.226412e-47 |
| MsG0780037964.01 | MsG0880044209.01 | 0.832396 | 9.681107e-56 | 1.080746e-52 |
| MsG0780037964.01 | MsG0880044573.01 | 0.800410 | 1.460085e-48 | 6.793974e-46 |
| MsG0780037964.01 | MsG0880045111.01 | 0.819288 | 1.256317e-52 | 9.626989e-50 |
| MsG0780037964.01 | MsG0880045362.01 | 0.801903 | 7.226708e-49 | 3.492173e-46 |
| MsG0780037964.01 | MsG0880045992.01 | 0.814321 | 1.635167e-51 | 1.093749e-48 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780037964.01.T01 | MTR_8g098595 | 74.790 | 119 | 16 | 2 | 15 | 133 | 1 | 105 | 1.14e-57 | 176 |
| MsG0780037964.01.T01 | MTR_8g028920 | 70.588 | 119 | 21 | 2 | 15 | 133 | 16 | 120 | 9.20e-55 | 170 |
| MsG0780037964.01.T01 | MTR_4g106690 | 70.588 | 119 | 21 | 3 | 15 | 133 | 16 | 120 | 2.08e-52 | 164 |
| MsG0780037964.01.T01 | MTR_8g028920 | 86.250 | 80 | 11 | 0 | 54 | 133 | 2 | 81 | 1.05e-47 | 150 |
| MsG0780037964.01.T01 | MTR_1g073600 | 81.250 | 80 | 15 | 0 | 38 | 117 | 18 | 97 | 9.67e-44 | 140 |
| MsG0780037964.01.T01 | MTR_8g098615 | 60.241 | 83 | 19 | 3 | 12 | 94 | 4 | 72 | 2.75e-24 | 89.4 |
| MsG0780037964.01.T01 | MTR_8g098615 | 62.025 | 79 | 16 | 3 | 16 | 94 | 1 | 65 | 8.99e-24 | 87.8 |
| MsG0780037964.01.T01 | MTR_8g098635 | 60.241 | 83 | 19 | 3 | 11 | 93 | 2 | 70 | 1.36e-21 | 88.6 |
| MsG0780037964.01.T01 | MTR_1g073390 | 51.786 | 112 | 29 | 7 | 15 | 125 | 1 | 88 | 2.54e-21 | 82.0 |
| MsG0780037964.01.T01 | MTR_2g078010 | 34.831 | 89 | 56 | 2 | 45 | 133 | 37 | 123 | 1.84e-15 | 68.6 |
| MsG0780037964.01.T01 | MTR_2g078010 | 34.831 | 89 | 56 | 2 | 45 | 133 | 37 | 123 | 2.88e-15 | 68.2 |
| MsG0780037964.01.T01 | MTR_2g078010 | 34.722 | 72 | 46 | 1 | 45 | 116 | 37 | 107 | 7.35e-14 | 63.5 |
| MsG0780037964.01.T01 | MTR_3g098780 | 32.927 | 82 | 54 | 1 | 51 | 132 | 41 | 121 | 6.53e-13 | 62.8 |
| MsG0780037964.01.T01 | MTR_3g098780 | 32.927 | 82 | 54 | 1 | 51 | 132 | 65 | 145 | 7.00e-13 | 63.2 |
| MsG0780037964.01.T01 | MTR_8g468530 | 25.984 | 127 | 78 | 4 | 20 | 132 | 13 | 137 | 7.10e-13 | 62.4 |
| MsG0780037964.01.T01 | MTR_4g108080 | 29.213 | 89 | 61 | 2 | 44 | 132 | 35 | 121 | 8.57e-13 | 61.6 |
| MsG0780037964.01.T01 | MTR_4g108080 | 30.137 | 73 | 50 | 1 | 44 | 116 | 35 | 106 | 2.74e-12 | 59.7 |
| MsG0780037964.01.T01 | MTR_5g075580 | 30.337 | 89 | 60 | 2 | 45 | 133 | 4 | 90 | 5.43e-12 | 58.9 |
| MsG0780037964.01.T01 | MTR_2g078010 | 36.486 | 74 | 45 | 2 | 60 | 133 | 66 | 137 | 6.16e-12 | 59.7 |
| MsG0780037964.01.T01 | MTR_7g116940 | 31.579 | 95 | 58 | 3 | 45 | 133 | 33 | 126 | 8.43e-12 | 59.3 |
| MsG0780037964.01.T01 | MTR_7g116940 | 30.337 | 89 | 60 | 2 | 45 | 133 | 33 | 119 | 8.49e-12 | 58.9 |
| MsG0780037964.01.T01 | MTR_8g071040 | 30.337 | 89 | 60 | 2 | 45 | 133 | 33 | 119 | 1.35e-11 | 58.5 |
| MsG0780037964.01.T01 | MTR_1g021150 | 30.337 | 89 | 60 | 2 | 45 | 133 | 33 | 119 | 1.87e-11 | 58.2 |
| MsG0780037964.01.T01 | MTR_4g073240 | 29.213 | 89 | 61 | 2 | 45 | 133 | 4 | 90 | 2.06e-11 | 57.4 |
| MsG0780037964.01.T01 | MTR_4g073240 | 29.213 | 89 | 61 | 2 | 45 | 133 | 33 | 119 | 2.65e-11 | 57.8 |
| MsG0780037964.01.T01 | MTR_3g110110 | 29.885 | 87 | 60 | 1 | 47 | 133 | 39 | 124 | 3.40e-11 | 57.8 |
| MsG0780037964.01.T01 | MTR_1g021150 | 30.337 | 89 | 60 | 2 | 45 | 133 | 41 | 127 | 3.75e-11 | 57.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780037964.01.T01 | AT1G63800 | 70.588 | 119 | 21 | 3 | 15 | 133 | 16 | 120 | 3.51e-53 | 166 |
| MsG0780037964.01.T01 | AT1G63800 | 70.588 | 119 | 21 | 3 | 15 | 133 | 1 | 105 | 4.03e-53 | 165 |
| MsG0780037964.01.T01 | AT5G41340 | 68.908 | 119 | 23 | 3 | 15 | 133 | 16 | 120 | 1.28e-51 | 162 |
| MsG0780037964.01.T01 | AT2G46030 | 62.500 | 120 | 31 | 2 | 14 | 133 | 18 | 123 | 1.08e-46 | 149 |
| MsG0780037964.01.T01 | AT2G46030 | 62.500 | 120 | 31 | 2 | 14 | 133 | 18 | 123 | 1.08e-46 | 149 |
| MsG0780037964.01.T01 | AT2G46030 | 63.559 | 118 | 29 | 2 | 15 | 132 | 16 | 119 | 1.31e-46 | 149 |
| MsG0780037964.01.T01 | AT2G46030 | 63.559 | 118 | 29 | 2 | 15 | 132 | 16 | 119 | 1.31e-46 | 149 |
| MsG0780037964.01.T01 | AT2G46030 | 63.559 | 118 | 29 | 2 | 15 | 132 | 88 | 191 | 4.08e-46 | 150 |
| MsG0780037964.01.T01 | AT5G41340 | 79.268 | 82 | 17 | 0 | 52 | 133 | 4 | 85 | 1.94e-43 | 140 |
| MsG0780037964.01.T01 | AT1G16890 | 35.955 | 89 | 55 | 2 | 45 | 133 | 4 | 90 | 5.73e-16 | 69.3 |
| MsG0780037964.01.T01 | AT1G78870 | 35.955 | 89 | 55 | 2 | 45 | 133 | 4 | 90 | 5.79e-16 | 69.3 |
| MsG0780037964.01.T01 | AT1G16890 | 35.955 | 89 | 55 | 2 | 45 | 133 | 37 | 123 | 7.44e-16 | 69.7 |
| MsG0780037964.01.T01 | AT1G78870 | 35.955 | 89 | 55 | 2 | 45 | 133 | 37 | 123 | 9.31e-16 | 69.7 |
| MsG0780037964.01.T01 | AT1G16890 | 35.955 | 89 | 55 | 2 | 45 | 133 | 46 | 132 | 1.11e-15 | 69.7 |
| MsG0780037964.01.T01 | AT1G78870 | 35.556 | 90 | 55 | 3 | 45 | 133 | 4 | 91 | 1.69e-14 | 65.5 |
| MsG0780037964.01.T01 | AT1G78870 | 36.111 | 72 | 45 | 1 | 45 | 116 | 37 | 107 | 1.95e-14 | 65.1 |
| MsG0780037964.01.T01 | AT3G08700 | 33.696 | 92 | 57 | 3 | 44 | 133 | 31 | 120 | 6.56e-13 | 62.0 |
| MsG0780037964.01.T01 | AT3G08700 | 33.696 | 92 | 57 | 3 | 44 | 133 | 31 | 120 | 6.56e-13 | 62.0 |
| MsG0780037964.01.T01 | AT1G14400 | 29.213 | 89 | 61 | 2 | 44 | 132 | 35 | 121 | 7.19e-13 | 62.0 |
| MsG0780037964.01.T01 | AT1G14400 | 29.213 | 89 | 61 | 2 | 44 | 132 | 35 | 121 | 7.19e-13 | 62.0 |
| MsG0780037964.01.T01 | AT5G50870 | 30.000 | 90 | 62 | 1 | 43 | 132 | 33 | 121 | 7.36e-13 | 62.8 |
| MsG0780037964.01.T01 | AT2G02760 | 29.213 | 89 | 61 | 2 | 44 | 132 | 35 | 121 | 7.58e-13 | 62.0 |
| MsG0780037964.01.T01 | AT2G02760 | 29.213 | 89 | 61 | 2 | 44 | 132 | 35 | 121 | 7.58e-13 | 62.0 |
| MsG0780037964.01.T01 | AT2G02760 | 29.213 | 89 | 61 | 2 | 44 | 132 | 35 | 121 | 7.58e-13 | 62.0 |
| MsG0780037964.01.T01 | AT2G02760 | 29.213 | 89 | 61 | 2 | 44 | 132 | 35 | 121 | 7.58e-13 | 62.0 |
| MsG0780037964.01.T01 | AT5G50870 | 30.000 | 90 | 62 | 1 | 43 | 132 | 33 | 121 | 8.39e-13 | 62.8 |
| MsG0780037964.01.T01 | AT5G56150 | 31.707 | 82 | 53 | 2 | 45 | 126 | 33 | 111 | 1.20e-12 | 60.5 |
| MsG0780037964.01.T01 | AT5G25760 | 29.885 | 87 | 60 | 1 | 47 | 133 | 39 | 124 | 5.88e-12 | 59.7 |
| MsG0780037964.01.T01 | AT5G25760 | 29.885 | 87 | 60 | 1 | 47 | 133 | 39 | 124 | 5.88e-12 | 59.7 |
| MsG0780037964.01.T01 | AT2G16740 | 30.337 | 89 | 60 | 2 | 45 | 133 | 33 | 119 | 1.01e-11 | 58.9 |
Find 21 sgRNAs with CRISPR-Local
Find 70 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAATAGAAGCAGACTTATA+AGG | 0.329409 | 7:-37180740 | None:intergenic |
| ACTCACATTTCATCAACATT+AGG | 0.355490 | 7:-37180785 | None:intergenic |
| GTCCTTCTCAAGAAGGAGTA+TGG | 0.371112 | 7:+37180687 | MsG0780037964.01.T01:CDS |
| TTTGATATTCAGGTCTGGTT+CGG | 0.422307 | 7:+37180930 | MsG0780037964.01.T01:intron |
| CAGACTTGGAGTCCCATGTT+TGG | 0.437496 | 7:+37180973 | MsG0780037964.01.T01:CDS |
| CAAACATGGGACTCCAAGTC+TGG | 0.448863 | 7:-37180972 | None:intergenic |
| CACAATGGATCTGATGCATT+GGG | 0.471037 | 7:-37181176 | None:intergenic |
| TCACAATGGATCTGATGCAT+TGG | 0.485086 | 7:-37181177 | None:intergenic |
| TTAATAAAGCTTACCAAACA+TGG | 0.504008 | 7:-37180986 | None:intergenic |
| AAACTTACAGTGTATAACTT+AGG | 0.519681 | 7:-37180239 | None:intergenic |
| AGGAGTATGGAAGATAAGAG+TGG | 0.530972 | 7:+37180700 | MsG0780037964.01.T01:CDS |
| TTGGGATATATAAGAAAATG+AGG | 0.531166 | 7:-37181158 | None:intergenic |
| TTCCATACTCCTTCTTGAGA+AGG | 0.542561 | 7:-37180689 | None:intergenic |
| CAGGATGATGAGTGATTACA+TGG | 0.544614 | 7:+37180163 | MsG0780037964.01.T01:intron |
| TAGATGTTATTAACCAGACT+TGG | 0.565318 | 7:+37180959 | MsG0780037964.01.T01:CDS |
| ACCGCAGGTCCTTCTCAAGA+AGG | 0.579537 | 7:+37180680 | MsG0780037964.01.T01:CDS |
| CAGTGTATAACTTAGGTCGA+TGG | 0.584949 | 7:-37180232 | None:intergenic |
| ACATTTCATCAACATTAGGA+TGG | 0.594673 | 7:-37180781 | None:intergenic |
| TAATAAAGCTTACCAAACAT+GGG | 0.614807 | 7:-37180985 | None:intergenic |
| TCAAGGAAGCAGCTTCACAA+TGG | 0.625636 | 7:-37181191 | None:intergenic |
| TCCTTCTTGAGAAGGACCTG+CGG | 0.675840 | 7:-37180681 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTCTAATGTTTTTGTAAT+TGG | + | Chr7:37180128-37180147 | MsG0780037964.01.T01:intron | 15.0% |
| !!! | ATTCTAATGTTTTTGTAATT+GGG | + | Chr7:37180129-37180148 | MsG0780037964.01.T01:intron | 15.0% |
| !!! | AAACTTTCATTGTTTTCTAA+GGG | + | Chr7:37180822-37180841 | MsG0780037964.01.T01:intron | 20.0% |
| !!! | AATCTTTTTCTTTGATATTC+AGG | + | Chr7:37180920-37180939 | MsG0780037964.01.T01:intron | 20.0% |
| !!! | TTTTAAGATGAAAGTTCTAT+TGG | + | Chr7:37180857-37180876 | MsG0780037964.01.T01:intron | 20.0% |
| ! | AAACTTACAGTGTATAACTT+AGG | - | Chr7:37180242-37180261 | None:intergenic | 25.0% |
| ! | AACCTTTACCTTACATATAA+TGG | + | Chr7:37181010-37181029 | MsG0780037964.01.T01:intron | 25.0% |
| ! | ATTCATTGATGCAACAAAAA+AGG | - | Chr7:37180295-37180314 | None:intergenic | 25.0% |
| ! | CAAAAACATTAGAATTTCTG+AGG | - | Chr7:37180124-37180143 | None:intergenic | 25.0% |
| ! | TAATAAAGCTTACCAAACAT+GGG | - | Chr7:37180988-37181007 | None:intergenic | 25.0% |
| ! | TTAATAAAGCTTACCAAACA+TGG | - | Chr7:37180989-37181008 | None:intergenic | 25.0% |
| ! | TTCATTGATGCAACAAAAAA+GGG | - | Chr7:37180294-37180313 | None:intergenic | 25.0% |
| ! | TTGGGATATATAAGAAAATG+AGG | - | Chr7:37181161-37181180 | None:intergenic | 25.0% |
| !! | CAAACTTTCATTGTTTTCTA+AGG | + | Chr7:37180821-37180840 | MsG0780037964.01.T01:intron | 25.0% |
| !!! | GTTTTTCACTCACTTTTATT+TGG | + | Chr7:37180653-37180672 | MsG0780037964.01.T01:CDS | 25.0% |
| ACAATAGAAGCAGACTTATA+AGG | - | Chr7:37180743-37180762 | None:intergenic | 30.0% | |
| ACATTCAATTATGTCTTGTC+AGG | + | Chr7:37180535-37180554 | MsG0780037964.01.T01:intron | 30.0% | |
| ACATTTCATCAACATTAGGA+TGG | - | Chr7:37180784-37180803 | None:intergenic | 30.0% | |
| ACCACAAATACAATCAAACA+AGG | - | Chr7:37181083-37181102 | None:intergenic | 30.0% | |
| ACTCACATTTCATCAACATT+AGG | - | Chr7:37180788-37180807 | None:intergenic | 30.0% | |
| CACCATTATATGTAAGGTAA+AGG | - | Chr7:37181015-37181034 | None:intergenic | 30.0% | |
| CATTACCACCATTATATGTA+AGG | - | Chr7:37181021-37181040 | None:intergenic | 30.0% | |
| CTTTACCTTACATATAATGG+TGG | + | Chr7:37181013-37181032 | MsG0780037964.01.T01:intron | 30.0% | |
| GCATCAACACTTCTAATTAA+AGG | + | Chr7:37180468-37180487 | MsG0780037964.01.T01:intron | 30.0% | |
| TAGATGTTATTAACCAGACT+TGG | + | Chr7:37180959-37180978 | MsG0780037964.01.T01:CDS | 30.0% | |
| TCATTGATGCAACAAAAAAG+GGG | - | Chr7:37180293-37180312 | None:intergenic | 30.0% | |
| TTCAACAAAAAACTGTTGCA+TGG | - | Chr7:37180210-37180229 | None:intergenic | 30.0% | |
| TTGAATGTAATCACATGTGT+CGG | - | Chr7:37180523-37180542 | None:intergenic | 30.0% | |
| ! | ACCTTGTTTGATTGTATTTG+TGG | + | Chr7:37181079-37181098 | MsG0780037964.01.T01:intron | 30.0% |
| ! | TTTTCTTTGATATTCAGGTC+TGG | + | Chr7:37180925-37180944 | MsG0780037964.01.T01:intron | 30.0% |
| AACGAGGATGAATTGCATTA+GGG | + | Chr7:37180332-37180351 | MsG0780037964.01.T01:intron | 35.0% | |
| AGTCTACTCTTCAGTAAACA+TGG | + | Chr7:37180062-37180081 | MsG0780037964.01.T01:intron | 35.0% | |
| AGTGAAAAACCTATGTAGCA+CGG | - | Chr7:37180643-37180662 | None:intergenic | 35.0% | |
| CATTGATGCAACAAAAAAGG+GGG | - | Chr7:37180292-37180311 | None:intergenic | 35.0% | |
| CGAATTGTGTTTAGCACATA+AGG | + | Chr7:37180415-37180434 | MsG0780037964.01.T01:intron | 35.0% | |
| GGGAAAAAATTGATACAACG+GGG | - | Chr7:37180272-37180291 | None:intergenic | 35.0% | |
| GGGGAAAAAATTGATACAAC+GGG | - | Chr7:37180273-37180292 | None:intergenic | 35.0% | |
| GGGGGAAAAAATTGATACAA+CGG | - | Chr7:37180274-37180293 | None:intergenic | 35.0% | |
| TCATCCTCGTTGAAGAAAAT+AGG | - | Chr7:37180323-37180342 | None:intergenic | 35.0% | |
| TTTGATATTCAGGTCTGGTT+CGG | + | Chr7:37180930-37180949 | MsG0780037964.01.T01:intron | 35.0% | |
| ! | TAATTGGGTTGTTGTGAATC+AGG | + | Chr7:37180144-37180163 | MsG0780037964.01.T01:intron | 35.0% |
| ! | TTTGCCTATTTTCTTCAACG+AGG | + | Chr7:37180316-37180335 | MsG0780037964.01.T01:intron | 35.0% |
| !! | TAGAAGTGTTGATGCTATAC+AGG | - | Chr7:37180463-37180482 | None:intergenic | 35.0% |
| ATTGCATTAGGGTCTATGAC+TGG | + | Chr7:37180343-37180362 | MsG0780037964.01.T01:intron | 40.0% | |
| CAACGAGGATGAATTGCATT+AGG | + | Chr7:37180331-37180350 | MsG0780037964.01.T01:intron | 40.0% | |
| CACAATGGATCTGATGCATT+GGG | - | Chr7:37181179-37181198 | None:intergenic | 40.0% | |
| CAGGATGATGAGTGATTACA+TGG | + | Chr7:37180163-37180182 | MsG0780037964.01.T01:intron | 40.0% | |
| CAGTGTATAACTTAGGTCGA+TGG | - | Chr7:37180235-37180254 | None:intergenic | 40.0% | |
| TCACAATGGATCTGATGCAT+TGG | - | Chr7:37181180-37181199 | None:intergenic | 40.0% | |
| TTCCATACTCCTTCTTGAGA+AGG | - | Chr7:37180692-37180711 | None:intergenic | 40.0% | |
| ! | AGGAGTATGGAAGATAAGAG+TGG | + | Chr7:37180700-37180719 | MsG0780037964.01.T01:CDS | 40.0% |
| ! | CTTCTAATTAAAGGCGTGTC+CGG | + | Chr7:37180477-37180496 | MsG0780037964.01.T01:intron | 40.0% |
| ! | GTCTATGACTGGTTAACTCT+AGG | + | Chr7:37180354-37180373 | MsG0780037964.01.T01:intron | 40.0% |
| ! | TTAAAGGCATGTCCAATGTC+CGG | - | Chr7:37180610-37180629 | None:intergenic | 40.0% |
| !! | TGTTTTCTAAGGGACATCGA+AGG | + | Chr7:37180832-37180851 | MsG0780037964.01.T01:intron | 40.0% |
| GCACGGACTCTTCAGATTAA+AGG | - | Chr7:37180626-37180645 | None:intergenic | 45.0% | |
| GTCCTTCTCAAGAAGGAGTA+TGG | + | Chr7:37180687-37180706 | MsG0780037964.01.T01:CDS | 45.0% | |
| !! | CTTTTATTTGGACTCACCGC+AGG | + | Chr7:37180665-37180684 | MsG0780037964.01.T01:CDS | 45.0% |
| CAAACATGGGACTCCAAGTC+TGG | - | Chr7:37180975-37180994 | None:intergenic | 50.0% | |
| CAACACGACACTGACACACA+TGG | - | Chr7:37180584-37180603 | None:intergenic | 50.0% | |
| CAGACTTGGAGTCCCATGTT+TGG | + | Chr7:37180973-37180992 | MsG0780037964.01.T01:CDS | 50.0% | |
| CATGTGTGTCAGTGTCGTGT+TGG | + | Chr7:37180582-37180601 | MsG0780037964.01.T01:intron | 50.0% | |
| CTGAAGAGTCCGTGCTACAT+AGG | + | Chr7:37180631-37180650 | MsG0780037964.01.T01:intron | 50.0% | |
| TCCTTCTTGAGAAGGACCTG+CGG | - | Chr7:37180684-37180703 | None:intergenic | 50.0% | |
| ACCGCAGGTCCTTCTCAAGA+AGG | + | Chr7:37180680-37180699 | MsG0780037964.01.T01:CDS | 55.0% | |
| ! | GTCGTGTTGGTGTAGGACAC+CGG | - | Chr7:37180499-37180518 | None:intergenic | 55.0% |
| ! | TGTCAGTGTCGTGTTGGTGC+CGG | + | Chr7:37180588-37180607 | MsG0780037964.01.T01:intron | 55.0% |
| !! | CACATGTGTCGGTGTCGTGT+TGG | - | Chr7:37180512-37180531 | None:intergenic | 55.0% |
| !! | TGTCGGTGTCGTGTTGGTGT+AGG | - | Chr7:37180506-37180525 | None:intergenic | 55.0% |
| !! | GTCGTGTTGGTGCCGGACAT+TGG | + | Chr7:37180595-37180614 | MsG0780037964.01.T01:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr7 | gene | 37180034 | 37181199 | 37180034 | ID=MsG0780037964.01;Name=MsG0780037964.01 |
| Chr7 | mRNA | 37180034 | 37181199 | 37180034 | ID=MsG0780037964.01.T01;Parent=MsG0780037964.01;Name=MsG0780037964.01.T01;_AED=0.32;_eAED=0.33;_QI=0|0.71|0.62|1|0.71|0.62|8|0|133 |
| Chr7 | exon | 37181129 | 37181199 | 37181129 | ID=MsG0780037964.01.T01:exon:5746;Parent=MsG0780037964.01.T01 |
| Chr7 | exon | 37180942 | 37180994 | 37180942 | ID=MsG0780037964.01.T01:exon:5745;Parent=MsG0780037964.01.T01 |
| Chr7 | exon | 37180653 | 37180801 | 37180653 | ID=MsG0780037964.01.T01:exon:5744;Parent=MsG0780037964.01.T01 |
| Chr7 | exon | 37180166 | 37180253 | 37180166 | ID=MsG0780037964.01.T01:exon:5743;Parent=MsG0780037964.01.T01 |
| Chr7 | exon | 37180034 | 37180074 | 37180034 | ID=MsG0780037964.01.T01:exon:5742;Parent=MsG0780037964.01.T01 |
| Chr7 | CDS | 37180034 | 37180074 | 37180034 | ID=MsG0780037964.01.T01:cds;Parent=MsG0780037964.01.T01 |
| Chr7 | CDS | 37180166 | 37180253 | 37180166 | ID=MsG0780037964.01.T01:cds;Parent=MsG0780037964.01.T01 |
| Chr7 | CDS | 37180653 | 37180801 | 37180653 | ID=MsG0780037964.01.T01:cds;Parent=MsG0780037964.01.T01 |
| Chr7 | CDS | 37180942 | 37180994 | 37180942 | ID=MsG0780037964.01.T01:cds;Parent=MsG0780037964.01.T01 |
| Chr7 | CDS | 37181129 | 37181199 | 37181129 | ID=MsG0780037964.01.T01:cds;Parent=MsG0780037964.01.T01 |
| Gene Sequence |
| Protein sequence |
