AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380012067.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380012067.01.T01 AT1G74350 57.309 773 301 10 34 800 4 753 0.0 865
MsG0380012067.01.T01 AT5G04050 25.719 591 356 14 87 645 58 597 9.41e-50 185
MsG0380012067.01.T01 AT5G04050 26.210 496 294 12 87 561 58 502 3.79e-40 158

Find 31 sgRNAs with CRISPR-Local

Find 263 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTCTTTCTCCTCCTTTCC+AGG 0.210800 3:-10424656 MsG0380012067.01.T01:intron
GAGATTGTCGTAATATTATA+AGG 0.263944 3:+10424964 None:intergenic
CCCCTAAAATCAAAGAAAAT+TGG 0.268586 3:-10424847 MsG0380012067.01.T01:exon
TCGTAATATTATAAGGATAA+AGG 0.376252 3:+10424971 None:intergenic
GTGGTGAGTTTGGCCATTGT+TGG 0.417685 3:+10424737 None:intergenic
CGAATGCGACCACAAGATAA+AGG 0.420046 3:+10425144 None:intergenic
CCTCCCTTCCCTCGTCTCTC+CGG 0.451070 3:+10424811 None:intergenic
AGAAAGAAGGGGTGAATCTG+AGG 0.471436 3:+10424669 None:intergenic
AGAAAGAGTGAAGTGATTTG+AGG 0.482776 3:+10424696 None:intergenic
AGAAGGGGTGAATCTGAGGA+AGG 0.509773 3:+10424673 None:intergenic
CCTGGAAAGGAGGAGAAAGA+AGG 0.542857 3:+10424656 None:intergenic
GAGGAAATTTGAAGTGGTGG+TGG 0.561838 3:+10424715 None:intergenic
CACGACACACCTTTATCTTG+TGG 0.562223 3:-10425153 MsG0380012067.01.T01:exon
GAAATTTGAAGTGGTGGTGG+TGG 0.573245 3:+10424718 None:intergenic
CTGGAAAGGAGGAGAAAGAA+GGG 0.576008 3:+10424657 None:intergenic
CATAATCTCTCTCACAATGA+GGG 0.580989 3:-10425188 None:intergenic
ACACCGGAGAGACGAGGGAA+GGG 0.581263 3:-10424814 MsG0380012067.01.T01:exon
TTTGAGGAAATTTGAAGTGG+TGG 0.590399 3:+10424712 None:intergenic
TCATAATCTCTCTCACAATG+AGG 0.592890 3:-10425189 None:intergenic
CACACCGGAGAGACGAGGGA+AGG 0.598109 3:-10424815 MsG0380012067.01.T01:exon
TCTTGTGGTCGCATTCGTGT+AGG 0.598902 3:-10425138 MsG0380012067.01.T01:exon
TGTTTCACACCGGAGAGACG+AGG 0.620157 3:-10424820 MsG0380012067.01.T01:exon
CACAGAATCTATTCCAACAA+TGG 0.623605 3:-10424750 MsG0380012067.01.T01:exon
GAAGTGTGTACCTGGAAAGG+AGG 0.624425 3:+10424646 None:intergenic
CCGGAGAGACGAGGGAAGGG+AGG 0.632718 3:-10424811 MsG0380012067.01.T01:exon
GTTTCACACCGGAGAGACGA+GGG 0.637054 3:-10424819 MsG0380012067.01.T01:exon
AGTGAAGTGTGTACCTGGAA+AGG 0.637938 3:+10424643 None:intergenic
AATTGGCTCGTGTTTCACAC+CGG 0.638497 3:-10424830 MsG0380012067.01.T01:exon
TGATTTGAGGAAATTTGAAG+TGG 0.643913 3:+10424709 None:intergenic
CTTCAAACTGAACAGAGCTG+CGG 0.674734 3:-10424786 MsG0380012067.01.T01:exon
TGGAAAGGAGGAGAAAGAAG+GGG 0.691573 3:+10424658 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTAATTTTTAA+AGG - Chr3:10422139-10422158 MsG0380012067.01.T01:exon 0.0%
!!! ATATTAAGTTTTATGTTTTT+CGG - Chr3:10422315-10422334 MsG0380012067.01.T01:CDS 10.0%
!! AGATAAATATTCATCAAAAT+CGG + Chr3:10423464-10423483 None:intergenic 15.0%
!!! CAAAAACTTTTTTTTTTACA+AGG + Chr3:10422345-10422364 None:intergenic 15.0%
!!! CTTGTAAAAAAAAAAGTTTT+TGG - Chr3:10422343-10422362 MsG0380012067.01.T01:CDS 15.0%
!!! TTTTGTTGAATAATTTGTAT+TGG - Chr3:10425175-10425194 MsG0380012067.01.T01:exon 15.0%
!! AAAAAAATTGAATTCGAATG+AGG - Chr3:10423067-10423086 MsG0380012067.01.T01:CDS 20.0%
!! TCGTAATATTATAAGGATAA+AGG + Chr3:10422263-10422282 None:intergenic 20.0%
!!! AGTCTAACAAAAATTTTAGA+GGG + Chr3:10422214-10422233 None:intergenic 20.0%
! AATACAGTAAACTTTAACAC+CGG + Chr3:10423633-10423652 None:intergenic 25.0%
! ACTTAAAAACTCATAGTTGA+AGG + Chr3:10425156-10425175 None:intergenic 25.0%
! AGTTTACTGTATTAGGTTTA+TGG - Chr3:10423640-10423659 MsG0380012067.01.T01:CDS 25.0%
! CCTATTACAAAACAATTACA+CGG + Chr3:10424754-10424773 None:intergenic 25.0%
! GAGATTGTCGTAATATTATA+AGG + Chr3:10422270-10422289 None:intergenic 25.0%
! GTGTTAAAGTTTACTGTATT+AGG - Chr3:10423633-10423652 MsG0380012067.01.T01:CDS 25.0%
! TCTGTTGAACTGTTATTATT+CGG + Chr3:10424265-10424284 None:intergenic 25.0%
! TGCTAACTTTAATGAGATAA+AGG - Chr3:10424474-10424493 MsG0380012067.01.T01:CDS 25.0%
! TTCATCCAAGCTTAAATAAA+CGG - Chr3:10424863-10424882 MsG0380012067.01.T01:exon 25.0%
! TTGTTTCATAAACTCGTAAA+AGG + Chr3:10424194-10424213 None:intergenic 25.0%
!! AGAAAAGTATATATCTACTG+AGG - Chr3:10424216-10424235 MsG0380012067.01.T01:CDS 25.0%
!! AGGTGATTAAAACACTTTTA+AGG + Chr3:10422243-10422262 None:intergenic 25.0%
!! ATAAGCATTTGTTGAAGATA+TGG - Chr3:10424074-10424093 MsG0380012067.01.T01:CDS 25.0%
!! GAGTCTAACAAAAATTTTAG+AGG + Chr3:10422215-10422234 None:intergenic 25.0%
!! TTTTGATATCCGATCAAATT+AGG - Chr3:10424497-10424516 MsG0380012067.01.T01:CDS 25.0%
!! TTTTGTGGAAATGGTTATAT+TGG + Chr3:10422919-10422938 None:intergenic 25.0%
!!! AAATTATTGATTGGTTTTCG+GGG - Chr3:10424416-10424435 MsG0380012067.01.T01:CDS 25.0%
!!! ACTATCATCTTCTTTTTTTC+AGG - Chr3:10422645-10422664 MsG0380012067.01.T01:CDS 25.0%
!!! AGCCAATTTTCTTTGATTTT+AGG + Chr3:10422389-10422408 None:intergenic 25.0%
!!! CCAATTTTCTTTGATTTTAG+GGG + Chr3:10422387-10422406 None:intergenic 25.0%
!!! CGAAATTATTGATTGGTTTT+CGG - Chr3:10424414-10424433 MsG0380012067.01.T01:CDS 25.0%
!!! GAAATTATTGATTGGTTTTC+GGG - Chr3:10424415-10424434 MsG0380012067.01.T01:CDS 25.0%
!!! GCCAATTTTCTTTGATTTTA+GGG + Chr3:10422388-10422407 None:intergenic 25.0%
AAAGTTTAAACCAAACATCC+TGG + Chr3:10425010-10425029 None:intergenic 30.0%
AAATCTCAACTCAACAACAA+CGG - Chr3:10422813-10422832 MsG0380012067.01.T01:CDS 30.0%
AACCTTCATCTTCAATGAAA+TGG + Chr3:10425050-10425069 None:intergenic 30.0%
ACCTTCATCTTCAATGAAAT+GGG + Chr3:10425049-10425068 None:intergenic 30.0%
AGATGATAGTTGAGTGTTTA+AGG + Chr3:10422635-10422654 None:intergenic 30.0%
ATAAACTTTACCAGGATGTT+TGG - Chr3:10424997-10425016 MsG0380012067.01.T01:exon 30.0%
ATAACCATTTCCACAAAATG+CGG - Chr3:10422921-10422940 MsG0380012067.01.T01:CDS 30.0%
ATACAGGCGAAATTATTGAT+TGG - Chr3:10424407-10424426 MsG0380012067.01.T01:CDS 30.0%
ATGATAGTTGAGTGTTTAAG+GGG + Chr3:10422633-10422652 None:intergenic 30.0%
ATGTATGGAATTACGTATAG+CGG - Chr3:10424685-10424704 MsG0380012067.01.T01:exon 30.0%
ATTCAATACTTACTACTTGC+CGG - Chr3:10425102-10425121 MsG0380012067.01.T01:exon 30.0%
ATTGAAGATGAAGGTTCTAT+TGG - Chr3:10425054-10425073 MsG0380012067.01.T01:exon 30.0%
CAAATGCTTATACCAATGAT+CGG + Chr3:10424065-10424084 None:intergenic 30.0%
CATTTGAAGGATTTGTATCT+TGG - Chr3:10424907-10424926 MsG0380012067.01.T01:exon 30.0%
CCCCTAAAATCAAAGAAAAT+TGG - Chr3:10422384-10422403 MsG0380012067.01.T01:CDS 30.0%
GAAAATAACGCCAAAGAAAA+TGG - Chr3:10422945-10422964 MsG0380012067.01.T01:CDS 30.0%
GAAGTATATATGTAAAGGTG+TGG - Chr3:10423232-10423251 MsG0380012067.01.T01:CDS 30.0%
GATACTTTGTTGCTAAAGTA+CGG + Chr3:10424534-10424553 None:intergenic 30.0%
GATGATAGTTGAGTGTTTAA+GGG + Chr3:10422634-10422653 None:intergenic 30.0%
GCATGATTTCCTAATTTGAT+CGG + Chr3:10424509-10424528 None:intergenic 30.0%
GCGTTGAAGTATATATGTAA+AGG - Chr3:10423227-10423246 MsG0380012067.01.T01:CDS 30.0%
GTACTTTAGCAACAAAGTAT+CGG - Chr3:10424533-10424552 MsG0380012067.01.T01:CDS 30.0%
TAATAACAGTTCAACAGAAC+AGG - Chr3:10424267-10424286 MsG0380012067.01.T01:CDS 30.0%
TGATTTGAGGAAATTTGAAG+TGG + Chr3:10422525-10422544 None:intergenic 30.0%
TTATTATTTCATCGATGACG+TGG - Chr3:10422974-10422993 MsG0380012067.01.T01:CDS 30.0%
TTGTGATCATAAACTTTACC+AGG - Chr3:10424989-10425008 MsG0380012067.01.T01:exon 30.0%
TTTATGAAGGTGATTCTTCT+TGG - Chr3:10425130-10425149 MsG0380012067.01.T01:exon 30.0%
! ATACTCTTCATGTAATGGAA+AGG - Chr3:10424800-10424819 MsG0380012067.01.T01:exon 30.0%
! CAACACATTTTCTTCACTTT+TGG + Chr3:10424125-10424144 None:intergenic 30.0%
! TAGAAGTATGTTTGATGCTA+GGG - Chr3:10423373-10423392 MsG0380012067.01.T01:CDS 30.0%
! TTAGAAGTATGTTTGATGCT+AGG - Chr3:10423372-10423391 MsG0380012067.01.T01:CDS 30.0%
!! CCGTGTAATTGTTTTGTAAT+AGG - Chr3:10424751-10424770 MsG0380012067.01.T01:exon 30.0%
!! TGTTTGATAGTGAGTTTCAT+AGG - Chr3:10423489-10423508 MsG0380012067.01.T01:CDS 30.0%
!! TTTGATAATGTTGTAAGCGT+CGG + Chr3:10422889-10422908 None:intergenic 30.0%
!!! ATTTGACCCGTTTTTTGATT+CGG + Chr3:10422797-10422816 None:intergenic 30.0%
!!! TATGGATGAGATTTTTTTCG+CGG - Chr3:10423658-10423677 MsG0380012067.01.T01:CDS 30.0%
AAAAAAAGAGGACTGATGAG+AGG + Chr3:10422125-10422144 None:intergenic 35.0%
AAGGAATCTGTTAACTCTTG+CGG + Chr3:10424175-10424194 None:intergenic 35.0%
AATAACGCCAAAGAAAATGG+AGG - Chr3:10422948-10422967 MsG0380012067.01.T01:CDS 35.0%
AATGAATTGCATTGCAGAGA+CGG - Chr3:10425078-10425097 MsG0380012067.01.T01:exon 35.0%
AATGTGTTGTCTAAGTTCGT+CGG - Chr3:10424136-10424155 MsG0380012067.01.T01:CDS 35.0%
AATTTCTCGAGGATATCACA+CGG - Chr3:10423176-10423195 MsG0380012067.01.T01:CDS 35.0%
ACAACTCTCAGCTTCAAATT+AGG + Chr3:10423113-10423132 None:intergenic 35.0%
ACGAAATGGAGATAGAAAAG+CGG - Chr3:10424560-10424579 MsG0380012067.01.T01:CDS 35.0%
AGAAAGAGTGAAGTGATTTG+AGG + Chr3:10422538-10422557 None:intergenic 35.0%
AGAATAGGGAAGAAATGGTT+GGG - Chr3:10423938-10423957 MsG0380012067.01.T01:CDS 35.0%
ATCACCTTCATAAAATCTGC+CGG + Chr3:10425124-10425143 None:intergenic 35.0%
ATTTAAGCTTGGATGAATGC+AGG + Chr3:10424860-10424879 None:intergenic 35.0%
CACAGAATCTATTCCAACAA+TGG - Chr3:10422481-10422500 MsG0380012067.01.T01:CDS 35.0%
CCTTCATCTTCAATGAAATG+GGG + Chr3:10425048-10425067 None:intergenic 35.0%
CGTAGACAATTAGATGGTAA+TGG - Chr3:10423596-10423615 MsG0380012067.01.T01:CDS 35.0%
GGAGTCAATGAATGAAGAAT+CGG - Chr3:10424630-10424649 MsG0380012067.01.T01:intron 35.0%
GGATGAGTGTTTGTTTGATT+TGG - Chr3:10423349-10423368 MsG0380012067.01.T01:CDS 35.0%
GGTCTATACTCTTCATGTAA+TGG - Chr3:10424795-10424814 MsG0380012067.01.T01:exon 35.0%
GTTGTGTAAGCAACATTTGA+AGG - Chr3:10424894-10424913 MsG0380012067.01.T01:exon 35.0%
TAGAATAGGGAAGAAATGGT+TGG - Chr3:10423937-10423956 MsG0380012067.01.T01:CDS 35.0%
TCATGGTTTGAAGAAGGTAA+AGG - Chr3:10423961-10423980 MsG0380012067.01.T01:CDS 35.0%
TGGTTTCGTAGACAATTAGA+TGG - Chr3:10423590-10423609 MsG0380012067.01.T01:CDS 35.0%
TGTGATATCCTCGAGAAATT+CGG + Chr3:10423176-10423195 None:intergenic 35.0%
TTGAGTGTTTAAGGGGAAAT+TGG + Chr3:10422626-10422645 None:intergenic 35.0%
TTTGTTGAAGATATGGATGC+AGG - Chr3:10424081-10424100 MsG0380012067.01.T01:CDS 35.0%
! ATAACTGCCTCCATTTTCTT+TGG + Chr3:10422958-10422977 None:intergenic 35.0%
! TATGGATTGACTACATCAGA+AGG - Chr3:10424349-10424368 MsG0380012067.01.T01:CDS 35.0%
! TCAAGTTTTTGACAACGATG+AGG - Chr3:10424657-10424676 MsG0380012067.01.T01:exon 35.0%
! TTTGAGGAAATTTGAAGTGG+TGG + Chr3:10422522-10422541 None:intergenic 35.0%
! TTTTCAAACCGAATTTCTCG+AGG - Chr3:10423165-10423184 MsG0380012067.01.T01:CDS 35.0%
!! AAAGTATCGGATACACGAAA+TGG - Chr3:10424546-10424565 MsG0380012067.01.T01:CDS 35.0%
!! GAGTTTGGTGGTTTTTGTAA+AGG - Chr3:10423407-10423426 MsG0380012067.01.T01:CDS 35.0%
!! GTTTTGAATCTTGAGTTTGG+TGG - Chr3:10423395-10423414 MsG0380012067.01.T01:CDS 35.0%
!! TTTTGGGGACATTAGTAAAG+AGG - Chr3:10423813-10423832 MsG0380012067.01.T01:CDS 35.0%
!!! AGGGTTTTGAATCTTGAGTT+TGG - Chr3:10423392-10423411 MsG0380012067.01.T01:CDS 35.0%
!!! CGCTTTTTTATTGCATAGAC+AGG + Chr3:10424319-10424338 None:intergenic 35.0%
AAGATATGGATGCAGGATGT+TGG - Chr3:10424088-10424107 MsG0380012067.01.T01:CDS 40.0%
AAGCTTGAGGCTTGGAATTA+CGG - Chr3:10423908-10423927 MsG0380012067.01.T01:CDS 40.0%
AGCAAAGTAAACCACCAATC+AGG + Chr3:10423263-10423282 None:intergenic 40.0%
AGCTTAAATAAACGGCGACT+AGG - Chr3:10424871-10424890 MsG0380012067.01.T01:exon 40.0%
AGGATTGAGATGAAGTACGA+GGG - Chr3:10423509-10423528 MsG0380012067.01.T01:CDS 40.0%
AGTCGCCGTTTATTTAAGCT+TGG + Chr3:10424871-10424890 None:intergenic 40.0%
ATGAATTGCATTGCAGAGAC+GGG - Chr3:10425079-10425098 MsG0380012067.01.T01:exon 40.0%
CATCAAAACTACGTTCGTTC+AGG + Chr3:10423007-10423026 None:intergenic 40.0%
CCCCATTTCATTGAAGATGA+AGG - Chr3:10425045-10425064 MsG0380012067.01.T01:exon 40.0%
CTTGTGGAGAAGGAATTTGA+TGG - Chr3:10423281-10423300 MsG0380012067.01.T01:CDS 40.0%
GCTTAAATAAACGGCGACTA+GGG - Chr3:10424872-10424891 MsG0380012067.01.T01:exon 40.0%
GGTTTGATGAAGAACTTAGC+AGG - Chr3:10424581-10424600 MsG0380012067.01.T01:intron 40.0%
GTTTACTTTGCTTGTGGAGA+AGG - Chr3:10423271-10423290 MsG0380012067.01.T01:CDS 40.0%
TAGGATTGAGATGAAGTACG+AGG - Chr3:10423508-10423527 MsG0380012067.01.T01:CDS 40.0%
TAGTAGCTCTCTGCTTAGTA+AGG - Chr3:10424009-10424028 MsG0380012067.01.T01:CDS 40.0%
TGGAGCTCCGAATCAAAAAA+CGG - Chr3:10422787-10422806 MsG0380012067.01.T01:CDS 40.0%
TTGCTTGTCATGCATGATAC+AGG - Chr3:10424391-10424410 MsG0380012067.01.T01:CDS 40.0%
TTTCCCATTTCCGAAAACCT+GGG - Chr3:10424032-10424051 MsG0380012067.01.T01:CDS 40.0%
! AACGATGAGGCGTTAATGTA+TGG - Chr3:10424670-10424689 MsG0380012067.01.T01:exon 40.0%
! ACATGAAGAGTATAGACCCT+TGG + Chr3:10424793-10424812 None:intergenic 40.0%
! AGTTTGGGGATTTGAAACGA+CGG + Chr3:10422862-10422881 None:intergenic 40.0%
! CGACGGTATGGATTAAGTTA+TGG + Chr3:10422845-10422864 None:intergenic 40.0%
! GGTAATGGTGTTGAAAGTTC+CGG - Chr3:10423611-10423630 MsG0380012067.01.T01:CDS 40.0%
! GGTGGTTTTTGTAAAGGAGA+GGG - Chr3:10423413-10423432 MsG0380012067.01.T01:CDS 40.0%
! GTGGTTTTTGTAAAGGAGAG+GGG - Chr3:10423414-10423433 MsG0380012067.01.T01:CDS 40.0%
! TGGTGGTTTTTGTAAAGGAG+AGG - Chr3:10423412-10423431 MsG0380012067.01.T01:CDS 40.0%
! TGTGATGGAGGATAAGATTG+AGG - Chr3:10423328-10423347 MsG0380012067.01.T01:CDS 40.0%
! TTGGTGGTTTACTTTGCTTG+TGG - Chr3:10423265-10423284 MsG0380012067.01.T01:CDS 40.0%
! TTTGAAGCTGAGAGTTGTTC+AGG - Chr3:10423115-10423134 MsG0380012067.01.T01:CDS 40.0%
!! AAAAAGCGTCTCGAGAGATA+TGG - Chr3:10424331-10424350 MsG0380012067.01.T01:CDS 40.0%
!! CGGTTTGTGTTTGTTGTCTT+TGG - Chr3:10424705-10424724 MsG0380012067.01.T01:exon 40.0%
!! GGAATTTGATGGTGCATTGA+TGG - Chr3:10423292-10423311 MsG0380012067.01.T01:CDS 40.0%
!! GTTATTTTCGCCGCATTTTG+TGG + Chr3:10422934-10422953 None:intergenic 40.0%
!! TCACTTCAGTCTGTTGACTT+TGG - Chr3:10424937-10424956 MsG0380012067.01.T01:exon 40.0%
!!! GAGATTTTTTTCGCGGTTTC+TGG - Chr3:10423665-10423684 MsG0380012067.01.T01:CDS 40.0%
AAAGGCAAAAGTCTCCAAGC+TGG - Chr3:10424818-10424837 MsG0380012067.01.T01:exon 45.0%
AAGTCTCCAAGCTGGAAAAC+TGG - Chr3:10424826-10424845 MsG0380012067.01.T01:exon 45.0%
AATGCAACTCAAACGCTTCC+TGG - Chr3:10422767-10422786 MsG0380012067.01.T01:CDS 45.0%
AATTACGGGACGGCTAGAAT+AGG - Chr3:10423923-10423942 MsG0380012067.01.T01:CDS 45.0%
ACATCATTCTCAACACACGC+TGG - Chr3:10422671-10422690 MsG0380012067.01.T01:CDS 45.0%
ACCACCACTAACCCTAAAAC+CGG - Chr3:10422735-10422754 MsG0380012067.01.T01:CDS 45.0%
AGAAAGAAGGGGTGAATCTG+AGG + Chr3:10422565-10422584 None:intergenic 45.0%
AGAGAGTCATGCTGTGAAAG+CGG - Chr3:10423844-10423863 MsG0380012067.01.T01:CDS 45.0%
AGCTTGAGGCTTGGAATTAC+GGG - Chr3:10423909-10423928 MsG0380012067.01.T01:CDS 45.0%
AGTCTCCAAGCTGGAAAACT+GGG - Chr3:10424827-10424846 MsG0380012067.01.T01:exon 45.0%
AGTGAAGTGTGTACCTGGAA+AGG + Chr3:10422591-10422610 None:intergenic 45.0%
ATAGTTGCCCTCATTGTGAG+AGG + Chr3:10422053-10422072 None:intergenic 45.0%
ATATCACACGGTTGTAGGAG+TGG - Chr3:10423188-10423207 MsG0380012067.01.T01:CDS 45.0%
ATGTGAGTGAAGTGTGTACC+TGG + Chr3:10422596-10422615 None:intergenic 45.0%
ATTACGGGACGGCTAGAATA+GGG - Chr3:10423924-10423943 MsG0380012067.01.T01:CDS 45.0%
CACGACACACCTTTATCTTG+TGG - Chr3:10422078-10422097 MsG0380012067.01.T01:exon 45.0%
CGAATGCGACCACAAGATAA+AGG + Chr3:10422090-10422109 None:intergenic 45.0%
CGGCTAGAATAGGGAAGAAA+TGG - Chr3:10423933-10423952 MsG0380012067.01.T01:CDS 45.0%
CTGGAAAGGAGGAGAAAGAA+GGG + Chr3:10422577-10422596 None:intergenic 45.0%
CTTCAAACTGAACAGAGCTG+CGG - Chr3:10422445-10422464 MsG0380012067.01.T01:CDS 45.0%
GAATGAGGAAATGTTGACGC+TGG - Chr3:10423082-10423101 MsG0380012067.01.T01:CDS 45.0%
GGAGCTCCGAATCAAAAAAC+GGG - Chr3:10422788-10422807 MsG0380012067.01.T01:CDS 45.0%
GTTGGGTCATGGTTTGAAGA+AGG - Chr3:10423955-10423974 MsG0380012067.01.T01:CDS 45.0%
GTTTCCCATTTCCGAAAACC+TGG - Chr3:10424031-10424050 MsG0380012067.01.T01:CDS 45.0%
GTTTGCTTTGCAGAAGCTTG+AGG - Chr3:10423895-10423914 MsG0380012067.01.T01:CDS 45.0%
TATCACACGGTTGTAGGAGT+GGG - Chr3:10423189-10423208 MsG0380012067.01.T01:CDS 45.0%
TGGAAAGGAGGAGAAAGAAG+GGG + Chr3:10422576-10422595 None:intergenic 45.0%
TGTAATAGGCTGTTCAGCTC+CGG - Chr3:10424765-10424784 MsG0380012067.01.T01:exon 45.0%
! CATCCCAGGTTTTCGGAAAT+GGG + Chr3:10424038-10424057 None:intergenic 45.0%
! CTTGCCGGCAGATTTTATGA+AGG - Chr3:10425117-10425136 MsG0380012067.01.T01:exon 45.0%
! GAAAACCCAGTTTTCCAGCT+TGG + Chr3:10424835-10424854 None:intergenic 45.0%
! GAGGAAATTTGAAGTGGTGG+TGG + Chr3:10422519-10422538 None:intergenic 45.0%
! GTAGTGGTGTTCGGTTTTTG+GGG - Chr3:10423798-10423817 MsG0380012067.01.T01:CDS 45.0%
! TGGTGCATTGATGGAGAAGT+TGG - Chr3:10423301-10423320 MsG0380012067.01.T01:CDS 45.0%
! TTCGCCGCATTTTGTGGAAA+TGG + Chr3:10422928-10422947 None:intergenic 45.0%
!! AATTGGCTCGTGTTTCACAC+CGG - Chr3:10422401-10422420 MsG0380012067.01.T01:CDS 45.0%
!! AGTCTGTTGACTTTGGTGCA+TGG - Chr3:10424944-10424963 MsG0380012067.01.T01:exon 45.0%
!! ATTCGGGTTTCTCCGGTTTT+AGG + Chr3:10422750-10422769 None:intergenic 45.0%
!! GAAATTTGAAGTGGTGGTGG+TGG + Chr3:10422516-10422535 None:intergenic 45.0%
!! GAAGCGTTTGAGTTGCATTC+GGG + Chr3:10422766-10422785 None:intergenic 45.0%
!! GAAGTTGGTTTGTGTGATGG+AGG - Chr3:10423316-10423335 MsG0380012067.01.T01:CDS 45.0%
!! GAGTTGTTCAGGAAGCGTTA+AGG - Chr3:10423126-10423145 MsG0380012067.01.T01:CDS 45.0%
!! GGAAGCGTTTGAGTTGCATT+CGG + Chr3:10422767-10422786 None:intergenic 45.0%
!! GGAGAAGTTGGTTTGTGTGA+TGG - Chr3:10423313-10423332 MsG0380012067.01.T01:CDS 45.0%
!! GGTAGTGGTGTTCGGTTTTT+GGG - Chr3:10423797-10423816 MsG0380012067.01.T01:CDS 45.0%
!! TTCGGGTTTCTCCGGTTTTA+GGG + Chr3:10422749-10422768 None:intergenic 45.0%
!! TTTCGCGGTTTCTGGTTCTA+GGG - Chr3:10423673-10423692 MsG0380012067.01.T01:CDS 45.0%
!!! GTTTTAGGGTTAGTGGTGGT+GGG + Chr3:10422735-10422754 None:intergenic 45.0%
!!! GTTTTTTGATTCGGAGCTCC+AGG + Chr3:10422788-10422807 None:intergenic 45.0%
!!! TGGTAGTGGTGTTCGGTTTT+TGG - Chr3:10423796-10423815 MsG0380012067.01.T01:CDS 45.0%
!!! TTCTCCGGTTTTAGGGTTAG+TGG + Chr3:10422742-10422761 None:intergenic 45.0%
!!! TTTTCGCGGTTTCTGGTTCT+AGG - Chr3:10423672-10423691 MsG0380012067.01.T01:CDS 45.0%
!! AAAAATTAAAAAAAAAAAAG+AGG + Chr3:10422137-10422156 None:intergenic 5.0%
AAGGTGTGGTGAGTCCTGAT+TGG - Chr3:10423246-10423265 MsG0380012067.01.T01:CDS 50.0%
AGAAGGGGTGAATCTGAGGA+AGG + Chr3:10422561-10422580 None:intergenic 50.0%
CCATTTCCGAAAACCTGGGA+TGG - Chr3:10424036-10424055 MsG0380012067.01.T01:CDS 50.0%
CCTGGAAAGGAGGAGAAAGA+AGG + Chr3:10422578-10422597 None:intergenic 50.0%
CCTTCTTTCTCCTCCTTTCC+AGG - Chr3:10422575-10422594 MsG0380012067.01.T01:CDS 50.0%
CGAGGATATCACACGGTTGT+AGG - Chr3:10423183-10423202 MsG0380012067.01.T01:CDS 50.0%
CTACATCAGAAGGATTCGCG+AGG - Chr3:10424359-10424378 MsG0380012067.01.T01:CDS 50.0%
CTGGGATGGAAACCGATCAT+TGG - Chr3:10424050-10424069 MsG0380012067.01.T01:CDS 50.0%
CTTTGCAGAAGCTTGAGGCT+TGG - Chr3:10423900-10423919 MsG0380012067.01.T01:CDS 50.0%
GAAGTGTGTACCTGGAAAGG+AGG + Chr3:10422588-10422607 None:intergenic 50.0%
GAGTCTCTGATGCTCGATGT+TGG - Chr3:10423740-10423759 MsG0380012067.01.T01:CDS 50.0%
GGCGACAAAATCCCTTCTTG+CGG + Chr3:10423443-10423462 None:intergenic 50.0%
GGGAAGAAATGGTTGGGTCA+TGG - Chr3:10423944-10423963 MsG0380012067.01.T01:CDS 50.0%
GTCTAAGTTCGTCGGAGAAC+CGG - Chr3:10424144-10424163 MsG0380012067.01.T01:CDS 50.0%
GTGGTGAGTTTGGCCATTGT+TGG + Chr3:10422497-10422516 None:intergenic 50.0%
GTTAACTCTTGCGGAAGAGC+CGG + Chr3:10424166-10424185 None:intergenic 50.0%
TCTTGTGGTCGCATTCGTGT+AGG - Chr3:10422093-10422112 MsG0380012067.01.T01:exon 50.0%
TGAGGCTTGGAATTACGGGA+CGG - Chr3:10423913-10423932 MsG0380012067.01.T01:CDS 50.0%
! AGAGTATAGACCCTTGGTGC+CGG + Chr3:10424787-10424806 None:intergenic 50.0%
! ATGAAGTACGAGGGTGTGCA+CGG - Chr3:10423518-10423537 MsG0380012067.01.T01:CDS 50.0%
! CAATGATCGGTTTCCATCCC+AGG + Chr3:10424052-10424071 None:intergenic 50.0%
! CCATCCCAGGTTTTCGGAAA+TGG + Chr3:10424039-10424058 None:intergenic 50.0%
! CGGTTTCCATCCCAGGTTTT+CGG + Chr3:10424045-10424064 None:intergenic 50.0%
! GAGTTGCATTCGGGTTTCTC+CGG + Chr3:10422757-10422776 None:intergenic 50.0%
! GGGGATTTGAAACGACGGTA+TGG + Chr3:10422857-10422876 None:intergenic 50.0%
!! GTAAGCGTCGGTGAGAGTTT+GGG + Chr3:10422877-10422896 None:intergenic 50.0%
!! TAAGCGTCGGTGAGAGTTTG+GGG + Chr3:10422876-10422895 None:intergenic 50.0%
!! TGTAAGCGTCGGTGAGAGTT+TGG + Chr3:10422878-10422897 None:intergenic 50.0%
!!! GGTTTTAGGGTTAGTGGTGG+TGG + Chr3:10422736-10422755 None:intergenic 50.0%
!!! TCCGGTTTTAGGGTTAGTGG+TGG + Chr3:10422739-10422758 None:intergenic 50.0%
AAGCCAAGCTCTGCATTGCG+CGG - Chr3:10423566-10423585 MsG0380012067.01.T01:CDS 55.0%
ACCAACACAGGACACGGAGA+AGG - Chr3:10424609-10424628 MsG0380012067.01.T01:intron 55.0%
ACCGATGTGCTGCCTTGTGT+AGG - Chr3:10423770-10423789 MsG0380012067.01.T01:CDS 55.0%
CCCTACACAAGGCAGCACAT+CGG + Chr3:10423774-10423793 None:intergenic 55.0%
CCGATGTGCTGCCTTGTGTA+GGG - Chr3:10423771-10423790 MsG0380012067.01.T01:CDS 55.0%
CGATGTGCTGCCTTGTGTAG+GGG - Chr3:10423772-10423791 MsG0380012067.01.T01:CDS 55.0%
GCTTCCACCAACACAGGACA+CGG - Chr3:10424603-10424622 MsG0380012067.01.T01:intron 55.0%
GTGTGGTGAGTCCTGATTGG+TGG - Chr3:10423249-10423268 MsG0380012067.01.T01:CDS 55.0%
GTTTCACACCGGAGAGACGA+GGG - Chr3:10422412-10422431 MsG0380012067.01.T01:CDS 55.0%
TAGCAGGCTTCCACCAACAC+AGG - Chr3:10424597-10424616 MsG0380012067.01.T01:intron 55.0%
TCCCGTACCATTTCAGCCAG+CGG + Chr3:10424450-10424469 None:intergenic 55.0%
TCCTTCTCCGTGTCCTGTGT+TGG + Chr3:10424613-10424632 None:intergenic 55.0%
TGTTTCACACCGGAGAGACG+AGG - Chr3:10422411-10422430 MsG0380012067.01.T01:CDS 55.0%
TTCTCCGTGTCCTGTGTTGG+TGG + Chr3:10424610-10424629 None:intergenic 55.0%
! TGCCGCTGGCTGAAATGGTA+CGG - Chr3:10424445-10424464 MsG0380012067.01.T01:CDS 55.0%
! TTGCTTGCCGCTGGCTGAAA+TGG - Chr3:10424440-10424459 MsG0380012067.01.T01:CDS 55.0%
!! AGTGGTGGTGGTGGTGAGTT+TGG + Chr3:10422507-10422526 None:intergenic 55.0%
!! TAGGGGCTGGTAGTGGTGTT+CGG - Chr3:10423789-10423808 MsG0380012067.01.T01:CDS 55.0%
ACACCGGAGAGACGAGGGAA+GGG - Chr3:10422417-10422436 MsG0380012067.01.T01:CDS 60.0%
CAACCGCGCAATGCAGAGCT+TGG + Chr3:10423572-10423591 None:intergenic 60.0%
CAAGCTCTGCATTGCGCGGT+TGG - Chr3:10423570-10423589 MsG0380012067.01.T01:CDS 60.0%
CACGGTTGTAGGAGTGGGAG+AGG - Chr3:10423194-10423213 MsG0380012067.01.T01:CDS 60.0%
CCACTACCAGCCCCTACACA+AGG + Chr3:10423785-10423804 None:intergenic 60.0%
CTGTTCAGCTCCGGCACCAA+GGG - Chr3:10424774-10424793 MsG0380012067.01.T01:exon 60.0%
GAGAGGGGTTGCCGCAAGAA+GGG - Chr3:10423429-10423448 MsG0380012067.01.T01:CDS 60.0%
TAGGAGTGGGAGAGGACGTG+TGG - Chr3:10423202-10423221 MsG0380012067.01.T01:CDS 60.0%
TTTCGGGGATTGCTTGCCGC+TGG - Chr3:10424431-10424450 MsG0380012067.01.T01:CDS 60.0%
! CCTTGTGTAGGGGCTGGTAG+TGG - Chr3:10423782-10423801 MsG0380012067.01.T01:CDS 60.0%
! GCCGCTGGCTGAAATGGTAC+GGG - Chr3:10424446-10424465 MsG0380012067.01.T01:CDS 60.0%
CACACCGGAGAGACGAGGGA+AGG - Chr3:10422416-10422435 MsG0380012067.01.T01:CDS 65.0%
CCTCCCTTCCCTCGTCTCTC+CGG + Chr3:10422423-10422442 None:intergenic 65.0%
GAGTGGGAGAGGACGTGTGG+CGG - Chr3:10423205-10423224 MsG0380012067.01.T01:CDS 65.0%
GCTGTTCAGCTCCGGCACCA+AGG - Chr3:10424773-10424792 MsG0380012067.01.T01:exon 65.0%
GGAGAGGGGTTGCCGCAAGA+AGG - Chr3:10423428-10423447 MsG0380012067.01.T01:CDS 65.0%
GGTGTGCACGGCGATGGAGA+GGG - Chr3:10423530-10423549 MsG0380012067.01.T01:CDS 65.0%
GTGCTGCCTTGTGTAGGGGC+TGG - Chr3:10423776-10423795 MsG0380012067.01.T01:CDS 65.0%
! CACGGCGATGGAGAGGGTGT+TGG - Chr3:10423536-10423555 MsG0380012067.01.T01:CDS 65.0%
! TACGAGGGTGTGCACGGCGA+TGG - Chr3:10423524-10423543 MsG0380012067.01.T01:CDS 65.0%
!! GGCGATGGAGAGGGTGTTGG+TGG - Chr3:10423539-10423558 MsG0380012067.01.T01:CDS 65.0%
CCGGAGAGACGAGGGAAGGG+AGG - Chr3:10422420-10422439 MsG0380012067.01.T01:CDS 70.0%
GGGTGTGCACGGCGATGGAG+AGG - Chr3:10423529-10423548 MsG0380012067.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr3 gene 10422051 10425202 10422051 ID=MsG0380012067.01;
Chr3 mRNA 10422051 10425202 10422051 ID=MsG0380012067.01.T01;Parent=MsG0380012067.01
Chr3 exon 10422051 10424586 10422051 ID=MsG0380012067.01.T01.exon;Parent=MsG0380012067.01.T01
Chr3 CDS 10422281 10424586 10422281 ID=MsG0380012067.01.T01.cds;Parent=MsG0380012067.01.T01
Chr3 CDS 10424657 10424753 10424657 ID=MsG0380012067.01.T01.cds;Parent=MsG0380012067.01.T01
Chr3 exon 10424657 10425202 10424657 ID=MsG0380012067.01.T01.exon;Parent=MsG0380012067.01.T01
Gene Sequence

>MsG0380012067.01.T01

ATGGCCAAACTCACCACCACCACCACTTCAAATTTCCTCAAATCACTTCACTCTTTCTCCTTCCTCAGATTCACCCCTTCTTTCTCCTCCTTTCCAGGTAAACATCATTCTCAACACACGCTGGCAACAGAACTAGCTTCGTTAATCGAAGAAAACTCTTCACCCACCACCACTAACCCTAAAACCGGAGAAACCCGAATGCAACTCAAACGCTTCCTGGAGCTCCGAATCAAAAAACGGGTCAAATCTCAACTCAACAACAACGGCAAGTTCCATAACTTAATCCATACCGTCGTTTCAAATCCCCAAACTCTCACCGACGCTTACAACATTATCAAAATCAACTCCAATATAACCATTTCCACAAAATGCGGCGAAAATAACGCCAAAGAAAATGGAGGCAGTTATTATTTCATCGATGACGTGGCAAAATGCCTGAACGAACGTAGTTTTGATGTGAATGCAAATACATATTCAATCTCAACGAGAAAGAAGAGAAAAAAATTGAATTCGAATGAGGAAATGTTGACGCTGGTGTTACCTAATTTGAAGCTGAGAGTTGTTCAGGAAGCGTTAAGGATTGTTTTAGAAGTGATTTTCAAACCGAATTTCTCGAGGATATCACACGGTTGTAGGAGTGGGAGAGGACGTGTGGCGGCGTTGAAGTATATATGTAAAGGTGTGGTGAGTCCTGATTGGTGGTTTACTTTGCTTGTGGAGAAGGAATTTGATGGTGCATTGATGGAGAAGTTGGTTTGTGTGATGGAGGATAAGATTGAGGATGAGTGTTTGTTTGATTTGGTTAGAAGTATGTTTGATGCTAGGGTTTTGAATCTTGAGTTTGGTGGTTTTTGTAAAGGAGAGGGGTTGCCGCAAGAAGGGATTTTGTCGCCGATTTTGATGAATATTTATCTTGATTTGTTTGATAGTGAGTTTCATAGGATTGAGATGAAGTACGAGGGTGTGCACGGCGATGGAGAGGGTGTTGGTGGAGATAAGCCAAGCTCTGCATTGCGCGGTTGGTTTCGTAGACAATTAGATGGTAATGGTGTTGAAAGTTCCGGTGTTAAAGTTTACTGTATTAGGTTTATGGATGAGATTTTTTTCGCGGTTTCTGGTTCTAGGGATTGTGCTGTTAGTTTTAAGTCTGAGATTGAGAGTTATTTGAAAGAGTCTCTGATGCTCGATGTTGGTGATCGAACCGATGTGCTGCCTTGTGTAGGGGCTGGTAGTGGTGTTCGGTTTTTGGGGACATTAGTAAAGAGGAATGTTGAAGAGAGTCATGCTGTGAAAGCGGTTCATAAGATGAAAGATAAAGTTGAGTTGTTTGCTTTGCAGAAGCTTGAGGCTTGGAATTACGGGACGGCTAGAATAGGGAAGAAATGGTTGGGTCATGGTTTGAAGAAGGTAAAGGAATCAGAGATCAAACATTTAGCTGATAGTAGCTCTCTGCTTAGTAAGGTTTCCCATTTCCGAAAACCTGGGATGGAAACCGATCATTGGTATAAGCATTTGTTGAAGATATGGATGCAGGATGTTGGAGTGAAAAATGCCAAAAGTGAAGAAAATGTGTTGTCTAAGTTCGTCGGAGAACCGGCTCTTCCGCAAGAGTTAACAGATTCCTTTTACGAGTTTATGAAACAAACAGAAAAGTATATATCTACTGAGGCAGATTCAATTATCAAGCTTTTGCCGAATAATAACAGTTCAACAGAACAGGTTGTAGCTAAAACAGAAATCATCGCTCCTGTCTATGCAATAAAAAAGCGTCTCGAGAGATATGGATTGACTACATCAGAAGGATTCGCGAGGTCTGCTAATTTGCTTGTCATGCATGATACAGGCGAAATTATTGATTGGTTTTCGGGGATTGCTTGCCGCTGGCTGAAATGGTACGGGAATTGTGCTAACTTTAATGAGATAAAGGTTTTGATATCCGATCAAATTAGGAAATCATGCATCCGTACTTTAGCAACAAAGTATCGGATACACGAAATGGAGATAGAAAAGCGGTTTGATGAAGAACTTAGCAGGCTTCCACCAACACAGGACACGGAGAAGGAGTCAATGAATGAAGAATCGGCTGTTCAAGTTTTTGACAACGATGAGGCGTTAATGTATGGAATTACGTATAGCGGTTTGTGTTTGTTGTCTTTGGCAAGAATTGTGACTGAAGCAAGACCGTGTAATTGTTTTGTAATAGGCTGTTCAGCTCCGGCACCAAGGGTCTATACTCTTCATGTAATGGAAAGGCAAAAGTCTCCAAGCTGGAAAACTGGGTTTTCGACCTGCATTCATCCAAGCTTAAATAAACGGCGACTAGGGTTGTGTAAGCAACATTTGAAGGATTTGTATCTTGGTCATATATCACTTCAGTCTGTTGACTTTGGTGCATGGAAATAA

Protein sequence

>MsG0380012067.01.T01

MAKLTTTTTSNFLKSLHSFSFLRFTPSFSSFPGKHHSQHTLATELASLIEENSSPTTTNPKTGETRMQLKRFLELRIKKRVKSQLNNNGKFHNLIHTVVSNPQTLTDAYNIIKINSNITISTKCGENNAKENGGSYYFIDDVAKCLNERSFDVNANTYSISTRKKRKKLNSNEEMLTLVLPNLKLRVVQEALRIVLEVIFKPNFSRISHGCRSGRGRVAALKYICKGVVSPDWWFTLLVEKEFDGALMEKLVCVMEDKIEDECLFDLVRSMFDARVLNLEFGGFCKGEGLPQEGILSPILMNIYLDLFDSEFHRIEMKYEGVHGDGEGVGGDKPSSALRGWFRRQLDGNGVESSGVKVYCIRFMDEIFFAVSGSRDCAVSFKSEIESYLKESLMLDVGDRTDVLPCVGAGSGVRFLGTLVKRNVEESHAVKAVHKMKDKVELFALQKLEAWNYGTARIGKKWLGHGLKKVKESEIKHLADSSSLLSKVSHFRKPGMETDHWYKHLLKIWMQDVGVKNAKSEENVLSKFVGEPALPQELTDSFYEFMKQTEKYISTEADSIIKLLPNNNSSTEQVVAKTEIIAPVYAIKKRLERYGLTTSEGFARSANLLVMHDTGEIIDWFSGIACRWLKWYGNCANFNEIKVLISDQIRKSCIRTLATKYRIHEMEIEKRFDEELSRLPPTQDTEKESMNEESAVQVFDNDEALMYGITYSGLCLLSLARIVTEARPCNCFVIGCSAPAPRVYTLHVMERQKSPSWKTGFSTCIHPSLNKRRLGLCKQHLKDLYLGHISLQSVDFGAWK*