AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480020765.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480020765.01.T01 MTR_2g095050 35.659 129 49 5 78 172 484 612 9.62e-14 69.7
MsG0480020765.01.T01 MTR_4g019450 63.636 44 13 1 79 122 406 446 8.15e-12 63.9
MsG0480020765.01.T01 MTR_7g065050 64.286 42 14 1 78 118 350 391 4.55e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480020765.01.T01 AT2G27990 40.741 135 55 4 78 206 469 584 1.35e-20 89.4

Find 42 sgRNAs with CRISPR-Local

Find 415 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCACTGTTGAATCCATATT+TGG 0.216643 4:-47939176 None:intergenic
TGAAAAGCAATTTCAGTGTT+TGG 0.266354 4:+47939041 MsG0480020765.01.T01:CDS
GTAATTGAGCCTTATTCTTT+TGG 0.283413 4:-47932037 None:intergenic
TGATCAGATTACACCAAATA+TGG 0.305163 4:+47939163 MsG0480020765.01.T01:intron
GTTGTTGGTTGTTCTAGTTC+TGG 0.313916 4:+47931855 MsG0480020765.01.T01:CDS
AGTGGTGGTGATGGAGGAAT+TGG 0.314187 4:+47931969 MsG0480020765.01.T01:CDS
GCAATTTCAGTGTTTGGAAA+TGG 0.322344 4:+47939047 MsG0480020765.01.T01:CDS
ACCAGAGTGCCAAAAGAATA+AGG 0.328721 4:+47932028 MsG0480020765.01.T01:CDS
TTGGAAATGGGGTCATCTTC+AGG 0.334212 4:+47939060 MsG0480020765.01.T01:CDS
CAATTTCAGTGTTTGGAAAT+GGG 0.339082 4:+47939048 MsG0480020765.01.T01:CDS
GCAAAAGGTAGTAGTAATTC+AGG 0.350990 4:+47931903 MsG0480020765.01.T01:CDS
GTAGACCTTAGACATCAATT+TGG 0.356780 4:+47939299 MsG0480020765.01.T01:CDS
ATAAATAATAGGTATCAAAT+TGG 0.363771 4:+47938890 MsG0480020765.01.T01:intron
TGGATCCGTGTCGCTGACTT+TGG 0.383478 4:+47939220 MsG0480020765.01.T01:CDS
GGTTCATCTTCAATGTTGTA+TGG 0.394873 4:+47931927 MsG0480020765.01.T01:CDS
TAAACGCTCGAGTCCGTGTA+TGG 0.405578 4:+47938917 MsG0480020765.01.T01:CDS
GCTCTCCAAATTGATGTCTA+AGG 0.413976 4:-47939304 None:intergenic
AAAGAGAATAGTGGTGGTGA+TGG 0.422004 4:+47931960 MsG0480020765.01.T01:CDS
GGATCCGTGTCGCTGACTTT+GGG 0.426105 4:+47939221 MsG0480020765.01.T01:CDS
AGGCATTAACAATGCTGAAA+AGG 0.442184 4:+47939080 MsG0480020765.01.T01:CDS
CTAATTAACCCACAAAATCA+TGG 0.474328 4:-47939334 None:intergenic
CAACCATTGGTTTCCATACA+CGG 0.478260 4:-47938930 None:intergenic
ATGTGTATTTCTTCAACCAT+TGG 0.483354 4:-47938943 None:intergenic
GAGAATAGTGGTGGTGATGG+AGG 0.486943 4:+47931963 MsG0480020765.01.T01:CDS
ATACACATGCTTGAATCAAA+AGG 0.494309 4:+47938958 MsG0480020765.01.T01:CDS
GAAAGTGGAGTTTCTGCAAA+AGG 0.505107 4:+47931888 MsG0480020765.01.T01:CDS
AAATATGGATTCAACAGTGA+TGG 0.505789 4:+47939178 MsG0480020765.01.T01:CDS
TCAAAAGAGAAAGAGAATAG+TGG 0.510959 4:+47931951 MsG0480020765.01.T01:CDS
GTGGTGGTGATGGAGGAATT+GGG 0.517374 4:+47931970 MsG0480020765.01.T01:CDS
AATTTCAGTGTTTGGAAATG+GGG 0.530029 4:+47939049 MsG0480020765.01.T01:CDS
TCTGGTGGTGTTGATGAAAG+TGG 0.532409 4:+47931873 MsG0480020765.01.T01:CDS
AATATGGATTCAACAGTGAT+GGG 0.554086 4:+47939179 MsG0480020765.01.T01:CDS
ATGGGTTCAAGAGATGTTGT+TGG 0.554971 4:+47931840 MsG0480020765.01.T01:CDS
GACACGGATCCACGTTGATA+CGG 0.573397 4:-47939209 None:intergenic
CTGACTTTGGGTCTGAGACA+CGG 0.590530 4:+47939233 MsG0480020765.01.T01:CDS
GTTGGTTGTTCTAGTTCTGG+TGG 0.593108 4:+47931858 MsG0480020765.01.T01:CDS
AAAGAGAAAGAGAATAGTGG+TGG 0.617298 4:+47931954 MsG0480020765.01.T01:CDS
GCAGCAACAGTTGCAGCACG+AGG 0.625331 4:+47939277 MsG0480020765.01.T01:CDS
AGTCCGTGTATGGAAACCAA+TGG 0.633260 4:+47938927 MsG0480020765.01.T01:CDS
ATTACTGTACATGCACGATG+AGG 0.677646 4:+47932055 MsG0480020765.01.T01:CDS
AAAGGTAGTAGTAATTCAGG+TGG 0.682385 4:+47931906 MsG0480020765.01.T01:CDS
CAGACCCAAAGTCAGCGACA+CGG 0.685959 4:-47939225 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATCATACATAAAATAAA+GGG - Chr4:47932307-47932326 None:intergenic 10.0%
!! AATAATAATAATATATGACA+AGG + Chr4:47937191-47937210 MsG0480020765.01.T01:intron 10.0%
!! GTTTCAATAAAAAATATATA+TGG - Chr4:47932940-47932959 None:intergenic 10.0%
!! TAAAATCATACATAAAATAA+AGG - Chr4:47932308-47932327 None:intergenic 10.0%
!! TAATGATATTCTAAATAATT+TGG - Chr4:47933899-47933918 None:intergenic 10.0%
!! TCAATAATATAAATGTTTAT+TGG - Chr4:47932246-47932265 None:intergenic 10.0%
!! TTAAATTATATAAGTATGTA+CGG + Chr4:47937424-47937443 MsG0480020765.01.T01:intron 10.0%
!! TTTACTTTATATAATAATTG+TGG + Chr4:47935932-47935951 MsG0480020765.01.T01:intron 10.0%
!!! AAAAAAATATTTCTTCTTTT+GGG - Chr4:47932167-47932186 None:intergenic 10.0%
!!! AAAAAACATTTTTTAAAATG+GGG - Chr4:47937515-47937534 None:intergenic 10.0%
!!! AATTAGTTTAATATTGTTTA+AGG + Chr4:47936624-47936643 MsG0480020765.01.T01:intron 10.0%
!!! ATGTTTTATGAATATAATAA+AGG + Chr4:47938088-47938107 MsG0480020765.01.T01:intron 10.0%
!!! CAAAAAACATTTTTTAAAAT+GGG - Chr4:47937516-47937535 None:intergenic 10.0%
!!! TAAAAAAATATTTCTTCTTT+TGG - Chr4:47932168-47932187 None:intergenic 10.0%
!!! TAGTTTAAATTTCAATTTTT+AGG - Chr4:47934049-47934068 None:intergenic 10.0%
!!! TTAAAAAATTTGTAATTTGT+AGG - Chr4:47937689-47937708 None:intergenic 10.0%
!!! TTACTGTTTTAATTTTAAAA+AGG + Chr4:47932401-47932420 MsG0480020765.01.T01:intron 10.0%
!!! TTCAGATTTTTATTATTTTT+AGG + Chr4:47933010-47933029 MsG0480020765.01.T01:intron 10.0%
!!! TTTTATTATTTTTAGGTTTT+GGG + Chr4:47933017-47933036 MsG0480020765.01.T01:intron 10.0%
!!! TTTTTATTATTTTTAGGTTT+TGG + Chr4:47933016-47933035 MsG0480020765.01.T01:intron 10.0%
!! AAAGTTCTTTATATACAATA+AGG - Chr4:47936298-47936317 None:intergenic 15.0%
!! AAATTGTAGAAATTATTGTA+AGG + Chr4:47937727-47937746 MsG0480020765.01.T01:intron 15.0%
!! AATAATGTTGAATGATATAT+AGG + Chr4:47936929-47936948 MsG0480020765.01.T01:intron 15.0%
!! AATTTAGTGTATATTGTATT+GGG - Chr4:47932676-47932695 None:intergenic 15.0%
!! ATAAATAATAGGTATCAAAT+TGG + Chr4:47938890-47938909 MsG0480020765.01.T01:intron 15.0%
!! ATTTGATACCTATTATTTAT+CGG - Chr4:47938890-47938909 None:intergenic 15.0%
!! CAATAAAAAATATATATGGT+AGG - Chr4:47932936-47932955 None:intergenic 15.0%
!! TAAAAAAAAACATATCGATA+TGG - Chr4:47933186-47933205 None:intergenic 15.0%
!! TAATTTAGTGTATATTGTAT+TGG - Chr4:47932677-47932696 None:intergenic 15.0%
!! TAGAATATACTATATATAGT+TGG + Chr4:47936891-47936910 MsG0480020765.01.T01:intron 15.0%
!! TTAGCATGATTTATAAATAA+TGG - Chr4:47935555-47935574 None:intergenic 15.0%
!! TTATTTATAAATCATGCTAA+TGG + Chr4:47935555-47935574 MsG0480020765.01.T01:intron 15.0%
!!! AAAACTCTAAAAAAGTTTTA+GGG + Chr4:47935815-47935834 MsG0480020765.01.T01:intron 15.0%
!!! AACATAAGATATATTGTTTT+AGG - Chr4:47938073-47938092 None:intergenic 15.0%
!!! AATTATTGATTTGAAAATCA+AGG - Chr4:47938332-47938351 None:intergenic 15.0%
!!! ATTTCAATGCATAATTTTTT+AGG - Chr4:47938047-47938066 None:intergenic 15.0%
!!! CCAAAAAACATTTTTTAAAA+TGG - Chr4:47937517-47937536 None:intergenic 15.0%
!!! CCATTTTAAAAAATGTTTTT+TGG + Chr4:47937514-47937533 MsG0480020765.01.T01:intron 15.0%
!!! CTTTGTTTTTTTTGAAAATA+TGG - Chr4:47937485-47937504 None:intergenic 15.0%
!!! TCTAACATTTACTATTTTAT+TGG + Chr4:47933601-47933620 MsG0480020765.01.T01:intron 15.0%
!!! TGTCAGTTTATTTTTTTTAT+CGG + Chr4:47934150-47934169 MsG0480020765.01.T01:intron 15.0%
!!! TTTATTATTTTTAGGTTTTG+GGG + Chr4:47933018-47933037 MsG0480020765.01.T01:intron 15.0%
!!! TTTCAATGCATAATTTTTTA+GGG - Chr4:47938046-47938065 None:intergenic 15.0%
!!! TTTTATATTATTTCTCTTGA+TGG + Chr4:47938264-47938283 MsG0480020765.01.T01:intron 15.0%
!! AAAAAAAAAAAGAAGAAGCT+AGG + Chr4:47932512-47932531 MsG0480020765.01.T01:intron 20.0%
!! AAACACAAATAAATAGTGTT+TGG + Chr4:47936134-47936153 MsG0480020765.01.T01:intron 20.0%
!! AAAGTGGAATATATTGTATT+GGG - Chr4:47932714-47932733 None:intergenic 20.0%
!! AAAGTTGTATTGAAAATTGA+AGG - Chr4:47932646-47932665 None:intergenic 20.0%
!! AAATTGGAAGCAATTTATAT+AGG + Chr4:47933420-47933439 MsG0480020765.01.T01:intron 20.0%
!! AACAAAACACTTAGAAAAAT+GGG - Chr4:47934791-47934810 None:intergenic 20.0%
!! AAGTTGTATTGAAAATTGAA+GGG - Chr4:47932645-47932664 None:intergenic 20.0%
!! AATTATGTATGTTATTCACA+TGG + Chr4:47934931-47934950 MsG0480020765.01.T01:intron 20.0%
!! AATTGGAAGCAATTTATATA+GGG + Chr4:47933421-47933440 MsG0480020765.01.T01:intron 20.0%
!! ACAATAAAAACAAAGTAGTA+CGG - Chr4:47938505-47938524 None:intergenic 20.0%
!! ACTATATATAGTTGGAAAAA+TGG + Chr4:47936899-47936918 MsG0480020765.01.T01:intron 20.0%
!! AGAAAATTGAGAAATCAAAT+TGG - Chr4:47934008-47934027 None:intergenic 20.0%
!! AGTACAAAACAAAACTAATT+TGG - Chr4:47935288-47935307 None:intergenic 20.0%
!! ATGAGGATTAATTTATCTTA+TGG + Chr4:47934120-47934139 MsG0480020765.01.T01:intron 20.0%
!! ATTATGTATGTTATTCACAT+GGG + Chr4:47934932-47934951 MsG0480020765.01.T01:intron 20.0%
!! ATTCGTGAAACAAAAAAAAA+AGG + Chr4:47933498-47933517 MsG0480020765.01.T01:intron 20.0%
!! GAAAATTGAGAAATCAAATT+GGG - Chr4:47934007-47934026 None:intergenic 20.0%
!! GAAATAAGGACAAAATAAAT+TGG + Chr4:47933404-47933423 MsG0480020765.01.T01:intron 20.0%
!! GAATAAAGATAAAACAAACT+AGG - Chr4:47934551-47934570 None:intergenic 20.0%
!! GATACAAATTAATCCATATA+TGG + Chr4:47934956-47934975 MsG0480020765.01.T01:intron 20.0%
!! TAACAAAACACTTAGAAAAA+TGG - Chr4:47934792-47934811 None:intergenic 20.0%
!! TCGTTAAAATTTAGTTGTAT+CGG + Chr4:47936647-47936666 MsG0480020765.01.T01:intron 20.0%
!! TCTTTATATACAATAAGGAA+AGG - Chr4:47936293-47936312 None:intergenic 20.0%
!! TGTAATAACCGATAAATAAT+AGG + Chr4:47938879-47938898 MsG0480020765.01.T01:intron 20.0%
!! TGTATGAAAATGTATTATGA+AGG + Chr4:47937983-47938002 MsG0480020765.01.T01:intron 20.0%
!! TTAATAATATTCAAGAGAAG+AGG + Chr4:47939126-47939145 MsG0480020765.01.T01:intron 20.0%
!! TTTAAAAGGATTGATTGAAA+TGG + Chr4:47934510-47934529 MsG0480020765.01.T01:intron 20.0%
!! TTTGTCAAACAGTAATTTAT+AGG + Chr4:47933975-47933994 MsG0480020765.01.T01:intron 20.0%
!!! AACAAATTTTCTCAAATCAA+TGG + Chr4:47934667-47934686 MsG0480020765.01.T01:intron 20.0%
!!! AACAACGAGTTAATTTTATA+AGG + Chr4:47937756-47937775 MsG0480020765.01.T01:intron 20.0%
!!! AAGAAAAGTGTATAAATGAA+GGG - Chr4:47932738-47932757 None:intergenic 20.0%
!!! AAGACAAATTGTATTTTATG+TGG + Chr4:47932557-47932576 MsG0480020765.01.T01:intron 20.0%
!!! AATTTTTAGGAGACTAATTT+GGG - Chr4:47934036-47934055 None:intergenic 20.0%
!!! ATTTTCTGCAATTTGAATTA+TGG + Chr4:47938580-47938599 MsG0480020765.01.T01:intron 20.0%
!!! CAAAACTCTAAAAAAGTTTT+AGG + Chr4:47935814-47935833 MsG0480020765.01.T01:intron 20.0%
!!! CTATTTTCTCAAATTATTAC+TGG + Chr4:47935079-47935098 MsG0480020765.01.T01:intron 20.0%
!!! CTTCTGACTTTTTTAAAATA+GGG + Chr4:47937560-47937579 MsG0480020765.01.T01:intron 20.0%
!!! GAATTTTTTTTGTCTGATAT+TGG + Chr4:47932878-47932897 MsG0480020765.01.T01:intron 20.0%
!!! GTCAGTTTATTTTTTTTATC+GGG + Chr4:47934151-47934170 MsG0480020765.01.T01:intron 20.0%
!!! TAAGAAAAGTGTATAAATGA+AGG - Chr4:47932739-47932758 None:intergenic 20.0%
!!! TAATACATTTTCATACAACA+TGG - Chr4:47937980-47937999 None:intergenic 20.0%
!!! TCAGTTTATTTTTTTTATCG+GGG + Chr4:47934152-47934171 MsG0480020765.01.T01:intron 20.0%
!!! TCATTTTCTTTTGAAATCTT+GGG + Chr4:47933134-47933153 MsG0480020765.01.T01:intron 20.0%
!!! TCTCTAAAACCTTTATATTA+TGG + Chr4:47935408-47935427 MsG0480020765.01.T01:intron 20.0%
!!! TCTTCTGACTTTTTTAAAAT+AGG + Chr4:47937559-47937578 MsG0480020765.01.T01:intron 20.0%
!!! TTCATTTTCTTTTGAAATCT+TGG + Chr4:47933133-47933152 MsG0480020765.01.T01:intron 20.0%
!!! TTCTGACTTTTTTAAAATAG+GGG + Chr4:47937561-47937580 MsG0480020765.01.T01:intron 20.0%
!!! TTTTCTACACTTTTTGAAAA+TGG - Chr4:47933328-47933347 None:intergenic 20.0%
!!! TTTTTCTAAGTGTTTTGTTA+TGG + Chr4:47934792-47934811 MsG0480020765.01.T01:intron 20.0%
! AAACTTACATGTCAAGTATT+AGG + Chr4:47937112-47937131 MsG0480020765.01.T01:intron 25.0%
! AACAATGATTCCAAATTAAG+GGG - Chr4:47934229-47934248 None:intergenic 25.0%
! AACCACAAATGTATAGTATT+TGG - Chr4:47936250-47936269 None:intergenic 25.0%
! AATAACATAATAGGACAGAA+TGG - Chr4:47933063-47933082 None:intergenic 25.0%
! AATGAAAACCAAAACAATCA+AGG - Chr4:47938427-47938446 None:intergenic 25.0%
! ACATGGTTAAATATGGTATT+AGG - Chr4:47937963-47937982 None:intergenic 25.0%
! ACCACAAATGTATAGTATTT+GGG - Chr4:47936249-47936268 None:intergenic 25.0%
! AGATCTATCAAATCGAAATA+AGG + Chr4:47933390-47933409 MsG0480020765.01.T01:intron 25.0%
! AGTTGTATTGAAAATTGAAG+GGG - Chr4:47932644-47932663 None:intergenic 25.0%
! ATAGAAAGAACACAAATCAT+AGG + Chr4:47936356-47936375 MsG0480020765.01.T01:intron 25.0%
! ATATTTATACATTCATCTCG+AGG - Chr4:47936329-47936348 None:intergenic 25.0%
! ATGATATATAGGTTACAAGA+AGG + Chr4:47936940-47936959 MsG0480020765.01.T01:intron 25.0%
! ATGCAAGATTTATTTCACTT+GGG - Chr4:47937808-47937827 None:intergenic 25.0%
! ATGTGATGAAATATAAGCAA+AGG - Chr4:47933788-47933807 None:intergenic 25.0%
! CAACAATGATTCCAAATTAA+GGG - Chr4:47934230-47934249 None:intergenic 25.0%
! CAATAATACAACCAAGAAAT+TGG - Chr4:47936520-47936539 None:intergenic 25.0%
! CAATGCAAGAATAACATAAT+AGG - Chr4:47933072-47933091 None:intergenic 25.0%
! CAATTTACAAAACTACATGT+AGG - Chr4:47937713-47937732 None:intergenic 25.0%
! CACTTTATAAAGTGATTCTA+AGG - Chr4:47936701-47936720 None:intergenic 25.0%
! CATGGTTAAATATGGTATTA+GGG - Chr4:47937962-47937981 None:intergenic 25.0%
! CTTTGTGTTAAATATTCCAA+AGG + Chr4:47935191-47935210 MsG0480020765.01.T01:intron 25.0%
! GAAAGTGGAATATATTGTAT+TGG - Chr4:47932715-47932734 None:intergenic 25.0%
! GAATTACAGCCATAATATAA+AGG - Chr4:47935420-47935439 None:intergenic 25.0%
! TAACTTAATTAATGTCTGTC+AGG + Chr4:47932365-47932384 MsG0480020765.01.T01:intron 25.0%
! TACTCTAATCCATTTACATT+AGG + Chr4:47933845-47933864 MsG0480020765.01.T01:intron 25.0%
! TAGAAAGAACACAAATCATA+GGG + Chr4:47936357-47936376 MsG0480020765.01.T01:intron 25.0%
! TAGAATAAAACAGACTACAA+GGG - Chr4:47932106-47932125 None:intergenic 25.0%
! TCAGAACAATGATAAAAATG+AGG + Chr4:47938999-47939018 MsG0480020765.01.T01:CDS 25.0%
! TCATACAACATGGTTAAATA+TGG - Chr4:47937970-47937989 None:intergenic 25.0%
! TCTTTCTATTATGATGAATG+AGG + Chr4:47934103-47934122 MsG0480020765.01.T01:intron 25.0%
! TGATATTGGATTTCTATTCT+TGG + Chr4:47932892-47932911 MsG0480020765.01.T01:intron 25.0%
! TGCTTATATTTCATCACATA+GGG + Chr4:47933789-47933808 MsG0480020765.01.T01:intron 25.0%
! TTAAGAATAGAGTTTGAACT+TGG - Chr4:47935225-47935244 None:intergenic 25.0%
! TTGCTTATATTTCATCACAT+AGG + Chr4:47933788-47933807 MsG0480020765.01.T01:intron 25.0%
! TTTATTTGTGTTTGTGACTA+TGG - Chr4:47936127-47936146 None:intergenic 25.0%
! TTTGGCAAAAATTTCAACAA+AGG + Chr4:47933537-47933556 MsG0480020765.01.T01:intron 25.0%
!! AAATTTATTACTGCTACTTG+TGG - Chr4:47937164-47937183 None:intergenic 25.0%
!! AAATTTTCAGTATGAAGTGT+CGG - Chr4:47936564-47936583 None:intergenic 25.0%
!! AAGAAATGACATTTTATGTG+TGG - Chr4:47936163-47936182 None:intergenic 25.0%
!! AATTGAACTTTTTGAACAGA+AGG - Chr4:47936442-47936461 None:intergenic 25.0%
!! ACAGAAGGTGTAAATTATTA+AGG - Chr4:47936427-47936446 None:intergenic 25.0%
!! AGAAAAGTGTATAAATGAAG+GGG - Chr4:47932737-47932756 None:intergenic 25.0%
!! ATGTACGGATTAAATATGTT+TGG + Chr4:47937439-47937458 MsG0480020765.01.T01:intron 25.0%
!! ATTTACATTAGGTAGTTTGT+GGG + Chr4:47933856-47933875 MsG0480020765.01.T01:intron 25.0%
!! ATTTGAAAACTTCGAAGTTT+TGG - Chr4:47938393-47938412 None:intergenic 25.0%
!! ATTTGTTCTTTTGTAAGCTA+TGG - Chr4:47937237-47937256 None:intergenic 25.0%
!! CTAAAAGTTGTGATTTTACA+GGG - Chr4:47933268-47933287 None:intergenic 25.0%
!! GGGGCTAAAATAAATTATTT+TGG - Chr4:47934210-47934229 None:intergenic 25.0%
!! TAATTGTTCCTTGATTGTTT+TGG + Chr4:47938416-47938435 MsG0480020765.01.T01:intron 25.0%
!! TCAAATCAATGGATATTTTC+TGG + Chr4:47934678-47934697 MsG0480020765.01.T01:intron 25.0%
!! TCTAAAAGTTGTGATTTTAC+AGG - Chr4:47933269-47933288 None:intergenic 25.0%
!! TTATTCTATTTTCTGTCTGT+GGG + Chr4:47934565-47934584 MsG0480020765.01.T01:intron 25.0%
!! TTTAGTGATTGTTATTGATG+TGG + Chr4:47936020-47936039 MsG0480020765.01.T01:intron 25.0%
!! TTTATTCTATTTTCTGTCTG+TGG + Chr4:47934564-47934583 MsG0480020765.01.T01:intron 25.0%
!! TTTGAAAACTTCGAAGTTTT+GGG - Chr4:47938392-47938411 None:intergenic 25.0%
!!! AAAATTTTTCAAGACACATG+TGG + Chr4:47934311-47934330 MsG0480020765.01.T01:intron 25.0%
!!! AATGCATAATTTTTTAGGGT+GGG - Chr4:47938042-47938061 None:intergenic 25.0%
!!! CAATTTTTAGGAGACTAATT+TGG - Chr4:47934037-47934056 None:intergenic 25.0%
!!! GAGTATATTTTTTCAAGACA+TGG + Chr4:47932801-47932820 MsG0480020765.01.T01:intron 25.0%
!!! GGACACTTTTTTTAGAAAAT+GGG - Chr4:47932609-47932628 None:intergenic 25.0%
!!! GTATTGGTTAACTAAGATTT+TGG + Chr4:47935328-47935347 MsG0480020765.01.T01:intron 25.0%
!!! TAAATGGATTAGAGTAACAA+TGG - Chr4:47933841-47933860 None:intergenic 25.0%
!!! TATATTGTGTCATTTTGTTG+AGG + Chr4:47938803-47938822 MsG0480020765.01.T01:intron 25.0%
!!! TTGTTTTGTACTTAGTTTGA+TGG + Chr4:47935296-47935315 MsG0480020765.01.T01:intron 25.0%
!!! TTTATTTTAGCCCCTTAATT+TGG + Chr4:47934216-47934235 MsG0480020765.01.T01:intron 25.0%
AAAAATATACTCCTCCTTTC+CGG - Chr4:47932793-47932812 None:intergenic 30.0%
AAAAGAACAAATCTGGATCT+GGG + Chr4:47937245-47937264 MsG0480020765.01.T01:intron 30.0%
AAATATGGATTCAACAGTGA+TGG + Chr4:47939178-47939197 MsG0480020765.01.T01:CDS 30.0%
AAATGAATAGACACAGTTGA+AGG - Chr4:47935777-47935796 None:intergenic 30.0%
AACAAAACTAATTTGGTACG+AGG - Chr4:47935281-47935300 None:intergenic 30.0%
AATATGGATTCAACAGTGAT+GGG + Chr4:47939179-47939198 MsG0480020765.01.T01:CDS 30.0%
AATGAATAGACACAGTTGAA+GGG - Chr4:47935776-47935795 None:intergenic 30.0%
AATTTCAGTGTTTGGAAATG+GGG + Chr4:47939049-47939068 MsG0480020765.01.T01:CDS 30.0%
AGAAAGAACACAAATCATAG+GGG + Chr4:47936358-47936377 MsG0480020765.01.T01:intron 30.0%
AGCTTACAAAAGAACAAATC+TGG + Chr4:47937238-47937257 MsG0480020765.01.T01:intron 30.0%
AGCTTATGGATTTCTTAGAT+TGG + Chr4:47932833-47932852 MsG0480020765.01.T01:intron 30.0%
ATACACATGCTTGAATCAAA+AGG + Chr4:47938958-47938977 MsG0480020765.01.T01:CDS 30.0%
ATACCATCAACAAATGCAAA+TGG + Chr4:47936971-47936990 MsG0480020765.01.T01:intron 30.0%
ATAGTCTTCAAAAACATCCT+AGG - Chr4:47938786-47938805 None:intergenic 30.0%
ATCACTGTTGAATCCATATT+TGG - Chr4:47939179-47939198 None:intergenic 30.0%
ATGCTAATCACATGAACAAT+CGG - Chr4:47936843-47936862 None:intergenic 30.0%
ATGTGTATTTCTTCAACCAT+TGG - Chr4:47938946-47938965 None:intergenic 30.0%
CAATTTCAGTGTTTGGAAAT+GGG + Chr4:47939048-47939067 MsG0480020765.01.T01:CDS 30.0%
CACAAACTACCTAATGTAAA+TGG - Chr4:47933857-47933876 None:intergenic 30.0%
CATTTACATTAGGTAGTTTG+TGG + Chr4:47933855-47933874 MsG0480020765.01.T01:intron 30.0%
CCAACAATGATTCCAAATTA+AGG - Chr4:47934231-47934250 None:intergenic 30.0%
CTAGAATAAAACAGACTACA+AGG - Chr4:47932107-47932126 None:intergenic 30.0%
GAAGAAAAAAAGTGAAGTTG+AGG - Chr4:47937541-47937560 None:intergenic 30.0%
GATGCAAGATTTATTTCACT+TGG - Chr4:47937809-47937828 None:intergenic 30.0%
GCTTATATTTCATCACATAG+GGG + Chr4:47933790-47933809 MsG0480020765.01.T01:intron 30.0%
GTTATTACAATGAAGAGCAA+TGG + Chr4:47939102-47939121 MsG0480020765.01.T01:intron 30.0%
GTTGGACATAATAACATAAG+AGG + Chr4:47934588-47934607 MsG0480020765.01.T01:intron 30.0%
TACAAACAGTTGTGAAACAT+GGG - Chr4:47934829-47934848 None:intergenic 30.0%
TCAAAAGAGAAAGAGAATAG+TGG + Chr4:47931951-47931970 MsG0480020765.01.T01:CDS 30.0%
TCAATAATTGCACTCTTGAA+TGG + Chr4:47938343-47938362 MsG0480020765.01.T01:intron 30.0%
TGAAAAGCAATTTCAGTGTT+TGG + Chr4:47939041-47939060 MsG0480020765.01.T01:CDS 30.0%
TGATCAGATTACACCAAATA+TGG + Chr4:47939163-47939182 MsG0480020765.01.T01:intron 30.0%
TTCTATTTGACATACACTCT+TGG + Chr4:47938290-47938309 MsG0480020765.01.T01:intron 30.0%
TTTATTGGATGAAACTCATG+CGG + Chr4:47933616-47933635 MsG0480020765.01.T01:intron 30.0%
! ATATAGTTCTTTTATCCCCT+AGG - Chr4:47933370-47933389 None:intergenic 30.0%
! ATGTTGATTGTGTTTAGGTT+TGG + Chr4:47934704-47934723 MsG0480020765.01.T01:intron 30.0%
! CCTTAATTTGGAATCATTGT+TGG + Chr4:47934228-47934247 MsG0480020765.01.T01:intron 30.0%
! GTATCGGATTAATTTCAAGT+TGG + Chr4:47936663-47936682 MsG0480020765.01.T01:intron 30.0%
! TATTCTATTTTCTGTCTGTG+GGG + Chr4:47934566-47934585 MsG0480020765.01.T01:intron 30.0%
! TGATCTGTGATAGCATTTTT+AGG - Chr4:47937088-47937107 None:intergenic 30.0%
! TGCTGTTCAATTTCATTTTC+AGG + Chr4:47938132-47938151 MsG0480020765.01.T01:intron 30.0%
! TGTTGGTTATTTGGTATTTG+AGG + Chr4:47934644-47934663 MsG0480020765.01.T01:intron 30.0%
! TTTAGAGCCAATGAAATGTA+TGG - Chr4:47937041-47937060 None:intergenic 30.0%
!! ACAACATCATTCTGAAATGT+CGG - Chr4:47935009-47935028 None:intergenic 30.0%
!! CCAAAAAAGCATTCTTGTTT+GGG - Chr4:47935587-47935606 None:intergenic 30.0%
!! TCCAAAAAAGCATTCTTGTT+TGG - Chr4:47935588-47935607 None:intergenic 30.0%
!! TTAGCTTTGATTTGACATTG+TGG + Chr4:47934621-47934640 MsG0480020765.01.T01:intron 30.0%
!!! ATGCATAATTTTTTAGGGTG+GGG - Chr4:47938041-47938060 None:intergenic 30.0%
!!! ATTATTTTTAGGTTTTGGGG+TGG + Chr4:47933021-47933040 MsG0480020765.01.T01:intron 30.0%
!!! CAATGCATAATTTTTTAGGG+TGG - Chr4:47938043-47938062 None:intergenic 30.0%
!!! GATAAAAAGCATTTTCCACT+TGG - Chr4:47934276-47934295 None:intergenic 30.0%
!!! GGGACACTTTTTTTAGAAAA+TGG - Chr4:47932610-47932629 None:intergenic 30.0%
!!! GGTGTGAAATAAGAGTATTT+TGG + Chr4:47933519-47933538 MsG0480020765.01.T01:intron 30.0%
!!! GTAATTGAGCCTTATTCTTT+TGG - Chr4:47932040-47932059 None:intergenic 30.0%
!!! TTATTTTTAGGTTTTGGGGT+GGG + Chr4:47933022-47933041 MsG0480020765.01.T01:intron 30.0%
!!! TTTTTTATCGGGGACTAAAT+CGG + Chr4:47934162-47934181 MsG0480020765.01.T01:intron 30.0%
AAAGAGAAAGAGAATAGTGG+TGG + Chr4:47931954-47931973 MsG0480020765.01.T01:CDS 35.0%
AAAGGTAGTAGTAATTCAGG+TGG + Chr4:47931906-47931925 MsG0480020765.01.T01:CDS 35.0%
AATAGTAGTCTAGCTGCAAA+TGG - Chr4:47938563-47938582 None:intergenic 35.0%
AATAGTGTTCTTACAGTGCA+TGG + Chr4:47936044-47936063 MsG0480020765.01.T01:intron 35.0%
ACAGTAGATTCTGATGCAAT+AGG + Chr4:47936475-47936494 MsG0480020765.01.T01:intron 35.0%
ACCAAGTAGGTCAATTATAC+CGG + Chr4:47932771-47932790 MsG0480020765.01.T01:intron 35.0%
ACCATCAAATCAAGATCAGA+CGG - Chr4:47938704-47938723 None:intergenic 35.0%
ACTATTTGCCACAATTCAAG+GGG - Chr4:47934386-47934405 None:intergenic 35.0%
AGAAAATGGGTCAGTTATTC+CGG - Chr4:47932596-47932615 None:intergenic 35.0%
AGAGTGACAGAGAAAACATA+CGG - Chr4:47937388-47937407 None:intergenic 35.0%
AGCTACACCATACATTTCAT+TGG + Chr4:47937031-47937050 MsG0480020765.01.T01:intron 35.0%
AGGCATTAACAATGCTGAAA+AGG + Chr4:47939080-47939099 MsG0480020765.01.T01:CDS 35.0%
AGTAATAGAAGAATCTGCCA+TGG - Chr4:47935173-47935192 None:intergenic 35.0%
ATATACTTCCATGACATTGC+TGG + Chr4:47935609-47935628 MsG0480020765.01.T01:intron 35.0%
ATATATTGTGAGAGACCAAG+TGG + Chr4:47934258-47934277 MsG0480020765.01.T01:intron 35.0%
ATCTGTGTGAAAAACCAAGT+AGG + Chr4:47932758-47932777 MsG0480020765.01.T01:intron 35.0%
ATGTGTTTATCAGTGTCTGT+AGG - Chr4:47938161-47938180 None:intergenic 35.0%
ATTTATGTGTCAGTGTGTGT+TGG - Chr4:47935044-47935063 None:intergenic 35.0%
ATTTGACATACACTCTTGGA+TGG + Chr4:47938294-47938313 MsG0480020765.01.T01:intron 35.0%
CAAAAGAACAAATCTGGATC+TGG + Chr4:47937244-47937263 MsG0480020765.01.T01:intron 35.0%
CACATTGCAGTTATGCAATT+TGG - Chr4:47938727-47938746 None:intergenic 35.0%
CACTATTTGCCACAATTCAA+GGG - Chr4:47934387-47934406 None:intergenic 35.0%
CTTGTGTGAATTGCAATTGA+AGG - Chr4:47934888-47934907 None:intergenic 35.0%
GAAAGAACACAAATCATAGG+GGG + Chr4:47936359-47936378 MsG0480020765.01.T01:intron 35.0%
GCAAAAGGTAGTAGTAATTC+AGG + Chr4:47931903-47931922 MsG0480020765.01.T01:CDS 35.0%
GCAATTTCAGTGTTTGGAAA+TGG + Chr4:47939047-47939066 MsG0480020765.01.T01:CDS 35.0%
GCCCAAATACTATACATTTG+TGG + Chr4:47936245-47936264 MsG0480020765.01.T01:intron 35.0%
GGGTCAAAAGAAATTTGTGA+GGG + Chr4:47934183-47934202 MsG0480020765.01.T01:intron 35.0%
GGTTCATCTTCAATGTTGTA+TGG + Chr4:47931927-47931946 MsG0480020765.01.T01:CDS 35.0%
GTAATAGAAGAATCTGCCAT+GGG - Chr4:47935172-47935191 None:intergenic 35.0%
GTACAAACAGTTGTGAAACA+TGG - Chr4:47934830-47934849 None:intergenic 35.0%
GTAGACCTTAGACATCAATT+TGG + Chr4:47939299-47939318 MsG0480020765.01.T01:CDS 35.0%
TAATTTGGTACGAGGAAAAG+TGG - Chr4:47935273-47935292 None:intergenic 35.0%
TACATGTCAAGTATTAGGAG+AGG + Chr4:47937117-47937136 MsG0480020765.01.T01:intron 35.0%
TAGTAAAAAACACTTGCGCA+CGG + Chr4:47937902-47937921 MsG0480020765.01.T01:intron 35.0%
TATACTTCCATGACATTGCT+GGG + Chr4:47935610-47935629 MsG0480020765.01.T01:intron 35.0%
TCACTTGGGCATTATAGAAT+TGG - Chr4:47937794-47937813 None:intergenic 35.0%
TGTATAAATGAAGGGGAAAG+TGG - Chr4:47932730-47932749 None:intergenic 35.0%
TGTGTTTATCAGTGTCTGTA+GGG - Chr4:47938160-47938179 None:intergenic 35.0%
TGTTGTCTTGACCAATTTCT+TGG + Chr4:47936506-47936525 MsG0480020765.01.T01:intron 35.0%
TTGCATCAGCTAACTCAAAT+TGG + Chr4:47935852-47935871 MsG0480020765.01.T01:intron 35.0%
TTTATTGAGTGAAACTCACG+TGG - Chr4:47933684-47933703 None:intergenic 35.0%
! AAAAAAGCAGGGTTCCATTT+TGG - Chr4:47935749-47935768 None:intergenic 35.0%
! AAAGCATTCTTGTTTGGGTT+TGG - Chr4:47935582-47935601 None:intergenic 35.0%
! ATTATTACTGGTGTCAGTGT+AGG + Chr4:47935091-47935110 MsG0480020765.01.T01:intron 35.0%
! ATTGAAGGGGTCAGTTATTT+TGG - Chr4:47932631-47932650 None:intergenic 35.0%
! ATTGTGTTTAGGTTTGGTCT+TGG + Chr4:47934710-47934729 MsG0480020765.01.T01:intron 35.0%
! CACATGATCCATGATTTTGT+GGG + Chr4:47939326-47939345 MsG0480020765.01.T01:CDS 35.0%
! CATGGTTAAGTTGTAGCTTA+TGG + Chr4:47932819-47932838 MsG0480020765.01.T01:intron 35.0%
! CTCACATGGATGCTTTTAAA+AGG + Chr4:47934496-47934515 MsG0480020765.01.T01:intron 35.0%
! GGGTTTTTAATATTCGCTGA+GGG - Chr4:47932147-47932166 None:intergenic 35.0%
! GGTGAATGTTGATTGTGTTT+AGG + Chr4:47934699-47934718 MsG0480020765.01.T01:intron 35.0%
! TGCATGTGAATTTTTACTGC+TGG + Chr4:47938848-47938867 MsG0480020765.01.T01:intron 35.0%
! TGGGTTTTTAATATTCGCTG+AGG - Chr4:47932148-47932167 None:intergenic 35.0%
! TTAGATGTTGAAGTATCCCA+TGG + Chr4:47935153-47935172 MsG0480020765.01.T01:intron 35.0%
! TTGATGGAGAAGAAGAGTAT+TGG + Chr4:47935312-47935331 MsG0480020765.01.T01:intron 35.0%
! TTGATTTGACATTGTGGTGT+TGG + Chr4:47934627-47934646 MsG0480020765.01.T01:intron 35.0%
! TTTTTATCGGGGACTAAATC+GGG + Chr4:47934163-47934182 MsG0480020765.01.T01:intron 35.0%
!! ACATTGTGGTGTTGGTTATT+TGG + Chr4:47934635-47934654 MsG0480020765.01.T01:intron 35.0%
!! CTAAGTGTTTTGTTATGGCT+TGG + Chr4:47934797-47934816 MsG0480020765.01.T01:intron 35.0%
!! TTGAAGGGGTCAGTTATTTT+GGG - Chr4:47932630-47932649 None:intergenic 35.0%
!! TTTCTTAGATTGGTCTGATG+TGG + Chr4:47932843-47932862 MsG0480020765.01.T01:intron 35.0%
!!! AAAATGGAACCCTGCTTTTT+TGG + Chr4:47935748-47935767 MsG0480020765.01.T01:intron 35.0%
!!! CCCAAACAAGAATGCTTTTT+TGG + Chr4:47935584-47935603 MsG0480020765.01.T01:intron 35.0%
!!! TATTTTTAGGTTTTGGGGTG+GGG + Chr4:47933023-47933042 MsG0480020765.01.T01:intron 35.0%
!!! TGCATAATTTTTTAGGGTGG+GGG - Chr4:47938040-47938059 None:intergenic 35.0%
AAAAATGAGGCATGCAGAGT+CGG + Chr4:47939012-47939031 MsG0480020765.01.T01:CDS 40.0%
AAACAATTGCACGACATGGT+TGG - Chr4:47934768-47934787 None:intergenic 40.0%
AACAGGTCTATCAAGAAACC+AGG + Chr4:47938193-47938212 MsG0480020765.01.T01:intron 40.0%
AACCTCAACAACAGCATGTT+TGG + Chr4:47937290-47937309 MsG0480020765.01.T01:intron 40.0%
AATGTGAGTCATCCATCTGA+TGG - Chr4:47938638-47938657 None:intergenic 40.0%
AGAATTGCCACTGATCTTTC+AGG - Chr4:47937334-47937353 None:intergenic 40.0%
ATGGGTTCAAGAGATGTTGT+TGG + Chr4:47931840-47931859 MsG0480020765.01.T01:CDS 40.0%
ATTACTGTACATGCACGATG+AGG + Chr4:47932055-47932074 MsG0480020765.01.T01:CDS 40.0%
CACATGTTAGCTACTCAAAC+AGG + Chr4:47938176-47938195 MsG0480020765.01.T01:intron 40.0%
CAGAATGATGTTGTACTCAG+AGG + Chr4:47935015-47935034 MsG0480020765.01.T01:intron 40.0%
CAGTGGCAATTCTTAAAGCT+TGG + Chr4:47937341-47937360 MsG0480020765.01.T01:intron 40.0%
CCAATATACACACACTCACA+TGG + Chr4:47934482-47934501 MsG0480020765.01.T01:intron 40.0%
CCATATTGCTTAGCTGCAAA+TGG - Chr4:47938610-47938629 None:intergenic 40.0%
CCATCAACAAATGCAAATGG+TGG + Chr4:47936974-47936993 MsG0480020765.01.T01:intron 40.0%
CCATGTGAGTGTGTGTATAT+TGG - Chr4:47934485-47934504 None:intergenic 40.0%
CCATTTGCAGCTAAGCAATA+TGG + Chr4:47938607-47938626 MsG0480020765.01.T01:intron 40.0%
CGGGTCAAAAGAAATTTGTG+AGG + Chr4:47934182-47934201 MsG0480020765.01.T01:intron 40.0%
CTATGGAAGAATTGCTCGAA+AGG - Chr4:47936110-47936129 None:intergenic 40.0%
GAAAATGGGTCAGTTATTCC+GGG - Chr4:47932595-47932614 None:intergenic 40.0%
GAAAGTGGAGTTTCTGCAAA+AGG + Chr4:47931888-47931907 MsG0480020765.01.T01:CDS 40.0%
GCACTATTTGCCACAATTCA+AGG - Chr4:47934388-47934407 None:intergenic 40.0%
GCTCTCCAAATTGATGTCTA+AGG - Chr4:47939307-47939326 None:intergenic 40.0%
GGCAAATAGTGCATTGTGAT+TGG + Chr4:47934396-47934415 MsG0480020765.01.T01:intron 40.0%
GTAGGTCAATTATACCGGAA+AGG + Chr4:47932776-47932795 MsG0480020765.01.T01:intron 40.0%
GTCTTCAAAAACATCCTAGG+AGG - Chr4:47938783-47938802 None:intergenic 40.0%
GTGAGTGTGTGTATATTGGT+GGG - Chr4:47934481-47934500 None:intergenic 40.0%
TATGATCGCATGTGTCAATG+CGG - Chr4:47936765-47936784 None:intergenic 40.0%
TCAAAAACATCCTAGGAGGA+GGG - Chr4:47938779-47938798 None:intergenic 40.0%
TCATCATTTGAGTCAGTAGC+TGG + Chr4:47936999-47937018 MsG0480020765.01.T01:intron 40.0%
TCCGGTATAATTGACCTACT+TGG - Chr4:47932775-47932794 None:intergenic 40.0%
TGAAGGGTTCCAAAAAAGCA+GGG - Chr4:47935760-47935779 None:intergenic 40.0%
TGTCGATGTCTATGTTTCGT+AGG + Chr4:47935128-47935147 MsG0480020765.01.T01:intron 40.0%
TGTGAGTGTGTGTATATTGG+TGG - Chr4:47934482-47934501 None:intergenic 40.0%
TTAGCTGATGCAACTAGGTA+GGG - Chr4:47935845-47935864 None:intergenic 40.0%
TTAGGAGACTAATTTGGGCT+GGG - Chr4:47934031-47934050 None:intergenic 40.0%
TTCAAAAACATCCTAGGAGG+AGG - Chr4:47938780-47938799 None:intergenic 40.0%
TTGAAGGGTTCCAAAAAAGC+AGG - Chr4:47935761-47935780 None:intergenic 40.0%
TTGAGTTAGCTGATGCAACT+AGG - Chr4:47935850-47935869 None:intergenic 40.0%
TTTAGGAGACTAATTTGGGC+TGG - Chr4:47934032-47934051 None:intergenic 40.0%
! AAAGAGAATAGTGGTGGTGA+TGG + Chr4:47931960-47931979 MsG0480020765.01.T01:CDS 40.0%
! ACCAGAGTGCCAAAAGAATA+AGG + Chr4:47932028-47932047 MsG0480020765.01.T01:CDS 40.0%
! AGGTAGTTTGTGGGATACAA+AGG + Chr4:47933865-47933884 MsG0480020765.01.T01:intron 40.0%
! AGTTCTTTTATCCCCTAGGA+GGG - Chr4:47933366-47933385 None:intergenic 40.0%
! CCACCATTTGCATTTGTTGA+TGG - Chr4:47936977-47936996 None:intergenic 40.0%
! GCACATGATCCATGATTTTG+TGG + Chr4:47939325-47939344 MsG0480020765.01.T01:CDS 40.0%
! TAGTTCTTTTATCCCCTAGG+AGG - Chr4:47933367-47933386 None:intergenic 40.0%
! TCCGTCTGATCTTGATTTGA+TGG + Chr4:47938700-47938719 MsG0480020765.01.T01:intron 40.0%
! TTACTGCTACTTGTGGTTGT+TGG - Chr4:47937157-47937176 None:intergenic 40.0%
!! CAACCATTGGTTTCCATACA+CGG - Chr4:47938933-47938952 None:intergenic 40.0%
!! GAACTTGGAAGCATTTCCTT+TGG - Chr4:47935210-47935229 None:intergenic 40.0%
!! GTTGTTGGTTGTTCTAGTTC+TGG + Chr4:47931855-47931874 MsG0480020765.01.T01:CDS 40.0%
!!! ATTTTTAGGTTTTGGGGTGG+GGG + Chr4:47933024-47933043 MsG0480020765.01.T01:intron 40.0%
!!! TGGATCTCACGTTTTGGAAA+TGG - Chr4:47933664-47933683 None:intergenic 40.0%
!!! TTTTTTAGGGTGGGGGAAAT+TGG - Chr4:47938033-47938052 None:intergenic 40.0%
AATATGGACCGTCCATCAGA+TGG + Chr4:47938623-47938642 MsG0480020765.01.T01:intron 45.0%
AATGACACCCAGCAATGTCA+TGG - Chr4:47935620-47935639 None:intergenic 45.0%
ACAGATGTGGCTGAGCTTTA+AGG + Chr4:47935452-47935471 MsG0480020765.01.T01:intron 45.0%
ACCAGTGCACAGTCCATATA+TGG - Chr4:47934972-47934991 None:intergenic 45.0%
AGGGTTACCTGAAAGATCAG+TGG + Chr4:47937324-47937343 MsG0480020765.01.T01:intron 45.0%
AGGTCTATCAAGAAACCAGG+TGG + Chr4:47938196-47938215 MsG0480020765.01.T01:intron 45.0%
AGTCCGTGTATGGAAACCAA+TGG + Chr4:47938927-47938946 MsG0480020765.01.T01:CDS 45.0%
AGTGCCTATTATCCCTCCTA+GGG + Chr4:47933351-47933370 MsG0480020765.01.T01:intron 45.0%
CACACACTATGGCACCAAAA+TGG + Chr4:47935732-47935751 MsG0480020765.01.T01:intron 45.0%
CACCCATCAACACACATCAA+CGG - Chr4:47935655-47935674 None:intergenic 45.0%
CTCAACAACAGCATGTTTGG+AGG + Chr4:47937293-47937312 MsG0480020765.01.T01:intron 45.0%
CTCCAAACATGCTGTTGTTG+AGG - Chr4:47937295-47937314 None:intergenic 45.0%
GATGACACCAATGACACCAA+TGG + Chr4:47935709-47935728 MsG0480020765.01.T01:intron 45.0%
GGCAGGCAATGCTATATTCT+AGG - Chr4:47934460-47934479 None:intergenic 45.0%
GGGATTAAGATCACTTGCAG+CGG - Chr4:47938759-47938778 None:intergenic 45.0%
GGTCAATTATACCGGAAAGG+AGG + Chr4:47932779-47932798 MsG0480020765.01.T01:intron 45.0%
GGTCTATCAAGAAACCAGGT+GGG + Chr4:47938197-47938216 MsG0480020765.01.T01:intron 45.0%
GTCTATCAAGAAACCAGGTG+GGG + Chr4:47938198-47938217 MsG0480020765.01.T01:intron 45.0%
GTTAGCTGATGCAACTAGGT+AGG - Chr4:47935846-47935865 None:intergenic 45.0%
TATCCCCTAGGAGGGATAAT+AGG - Chr4:47933358-47933377 None:intergenic 45.0%
TCTATCAAGAAACCAGGTGG+GGG + Chr4:47938199-47938218 MsG0480020765.01.T01:intron 45.0%
TGAGTCATCCATCTGATGGA+CGG - Chr4:47938634-47938653 None:intergenic 45.0%
TGATCTTAATCCCTCCTCCT+AGG + Chr4:47938766-47938785 MsG0480020765.01.T01:intron 45.0%
TGGGAAACAATTGCACGACA+TGG - Chr4:47934772-47934791 None:intergenic 45.0%
TTAAAGCTCAGCCACATCTG+TGG - Chr4:47935453-47935472 None:intergenic 45.0%
TTGGAAATGGGGTCATCTTC+AGG + Chr4:47939060-47939079 MsG0480020765.01.T01:CDS 45.0%
! ATCTTTCAGGTAACCCTCTC+TGG - Chr4:47937321-47937340 None:intergenic 45.0%
! CAAGGGGTGTGCTGAAAAAT+AGG - Chr4:47934370-47934389 None:intergenic 45.0%
! CTATTTTCTGTCTGTGGGGT+TGG + Chr4:47934570-47934589 MsG0480020765.01.T01:intron 45.0%
! TACAGCTTACGCAGTTGATG+TGG + Chr4:47935354-47935373 MsG0480020765.01.T01:intron 45.0%
! TCCATATATGGACTGTGCAC+TGG + Chr4:47934968-47934987 MsG0480020765.01.T01:intron 45.0%
! TCTTTCAGGTAACCCTCTCT+GGG - Chr4:47937320-47937339 None:intergenic 45.0%
! TGATGTGTGTTGATGGGTGT+GGG + Chr4:47935656-47935675 MsG0480020765.01.T01:intron 45.0%
! TTGATGTGTGTTGATGGGTG+TGG + Chr4:47935655-47935674 MsG0480020765.01.T01:intron 45.0%
!! GCCTTATTCTTTTGGCACTC+TGG - Chr4:47932032-47932051 None:intergenic 45.0%
!! GGTTTTATGCCGTATCAACG+TGG + Chr4:47939200-47939219 MsG0480020765.01.T01:CDS 45.0%
!! GTTGGTTGTTCTAGTTCTGG+TGG + Chr4:47931858-47931877 MsG0480020765.01.T01:CDS 45.0%
!! TCTGGTGGTGTTGATGAAAG+TGG + Chr4:47931873-47931892 MsG0480020765.01.T01:CDS 45.0%
AAAAGAAGTAGACCCCCACC+TGG - Chr4:47938214-47938233 None:intergenic 50.0%
ACGACATTGCAACCGCGTAA+CGG - Chr4:47935380-47935399 None:intergenic 50.0%
ATCAACACACATCAACGGCC+AGG - Chr4:47935650-47935669 None:intergenic 50.0%
ATGGGTCAGTTATTCCGGGA+CGG - Chr4:47932591-47932610 None:intergenic 50.0%
GACACCAATGGCACACACTA+TGG + Chr4:47935721-47935740 MsG0480020765.01.T01:intron 50.0%
GACACGGATCCACGTTGATA+CGG - Chr4:47939212-47939231 None:intergenic 50.0%
GAGTGCCTATTATCCCTCCT+AGG + Chr4:47933350-47933369 MsG0480020765.01.T01:intron 50.0%
GGGGGAAATTGGTCAGTAGT+AGG - Chr4:47938022-47938041 None:intergenic 50.0%
GGTCTTGGATGTGACTGTGT+GGG + Chr4:47934725-47934744 MsG0480020765.01.T01:intron 50.0%
GTCTTGGATGTGACTGTGTG+GGG + Chr4:47934726-47934745 MsG0480020765.01.T01:intron 50.0%
GTGCCTATTATCCCTCCTAG+GGG + Chr4:47933352-47933371 MsG0480020765.01.T01:intron 50.0%
GTGTGTGTGATGTGTGTGTG+TGG + Chr4:47935682-47935701 MsG0480020765.01.T01:intron 50.0%
TAAACGCTCGAGTCCGTGTA+TGG + Chr4:47938917-47938936 MsG0480020765.01.T01:CDS 50.0%
TAAGATCACTTGCAGCGGCA+AGG - Chr4:47938754-47938773 None:intergenic 50.0%
TCAGCACACCCCTTGAATTG+TGG + Chr4:47934375-47934394 MsG0480020765.01.T01:intron 50.0%
TGGCCGTTGATGTGTGTTGA+TGG + Chr4:47935649-47935668 MsG0480020765.01.T01:intron 50.0%
TGTGTGATGTGTGTGTGTGG+TGG + Chr4:47935685-47935704 MsG0480020765.01.T01:intron 50.0%
! CTCACGTGGATCTCACGTTT+TGG - Chr4:47933670-47933689 None:intergenic 50.0%
! CTGACTTTGGGTCTGAGACA+CGG + Chr4:47939233-47939252 MsG0480020765.01.T01:CDS 50.0%
! CTTTCAGGTAACCCTCTCTG+GGG - Chr4:47937319-47937338 None:intergenic 50.0%
! GATGTGTGTTGATGGGTGTG+GGG + Chr4:47935657-47935676 MsG0480020765.01.T01:intron 50.0%
! GGCCGTTGATGTGTGTTGAT+GGG + Chr4:47935650-47935669 MsG0480020765.01.T01:intron 50.0%
! GTGTGTGTATATTGGTGGGC+AGG - Chr4:47934477-47934496 None:intergenic 50.0%
! TGGTCTTGGATGTGACTGTG+TGG + Chr4:47934724-47934743 MsG0480020765.01.T01:intron 50.0%
!! AGTGGTGGTGATGGAGGAAT+TGG + Chr4:47931969-47931988 MsG0480020765.01.T01:CDS 50.0%
!! GAGAATAGTGGTGGTGATGG+AGG + Chr4:47931963-47931982 MsG0480020765.01.T01:CDS 50.0%
!! GTGGTGGTGATGGAGGAATT+GGG + Chr4:47931970-47931989 MsG0480020765.01.T01:CDS 50.0%
!! GTGTGTGCCATTGGTGTCAT+TGG - Chr4:47935719-47935738 None:intergenic 50.0%
!! TGGGTGTCATTGTGCAATCC+TGG + Chr4:47935629-47935648 MsG0480020765.01.T01:intron 50.0%
ATGTTTGGAGGCCCCAGAGA+GGG + Chr4:47937305-47937324 MsG0480020765.01.T01:intron 55.0%
CAGACCCAAAGTCAGCGACA+CGG - Chr4:47939228-47939247 None:intergenic 55.0%
CCACATCTGTGGTGCACAAC+TGG - Chr4:47935442-47935461 None:intergenic 55.0%
CCAGTTGTGCACCACAGATG+TGG + Chr4:47935439-47935458 MsG0480020765.01.T01:intron 55.0%
GTCAGTTATTCCGGGACGGA+GGG - Chr4:47932587-47932606 None:intergenic 55.0%
! CAGTTGATGTGGCCGTTACG+CGG + Chr4:47935365-47935384 MsG0480020765.01.T01:intron 55.0%
! GGTGCCATAGTGTGTGCCAT+TGG - Chr4:47935728-47935747 None:intergenic 55.0%
!! GGATCCGTGTCGCTGACTTT+GGG + Chr4:47939221-47939240 MsG0480020765.01.T01:CDS 55.0%
!! TGGATCCGTGTCGCTGACTT+TGG + Chr4:47939220-47939239 MsG0480020765.01.T01:CDS 55.0%
!!! TTTAGGTTTTGGGGTGGGGG+TGG + Chr4:47933027-47933046 MsG0480020765.01.T01:intron 55.0%
ATGTGGTACTCCCTCCGTCC+CGG + Chr4:47932574-47932593 MsG0480020765.01.T01:intron 60.0%
CATGTTTGGAGGCCCCAGAG+AGG + Chr4:47937304-47937323 MsG0480020765.01.T01:intron 60.0%
GCAGCAACAGTTGCAGCACG+AGG + Chr4:47939277-47939296 MsG0480020765.01.T01:CDS 60.0%
GGTCAGTTATTCCGGGACGG+AGG - Chr4:47932588-47932607 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr4 gene 47931840 47939352 47931840 ID=MsG0480020765.01;Name=MsG0480020765.01
Chr4 mRNA 47931840 47939352 47931840 ID=MsG0480020765.01.T01;Parent=MsG0480020765.01;Name=MsG0480020765.01.T01;_AED=0.32;_eAED=0.32;_QI=0|0.5|0.6|1|0.5|0.4|5|0|206
Chr4 exon 47931840 47932076 47931840 ID=MsG0480020765.01.T01:exon:8320;Parent=MsG0480020765.01.T01
Chr4 exon 47938901 47939101 47938901 ID=MsG0480020765.01.T01:exon:8321;Parent=MsG0480020765.01.T01
Chr4 exon 47939170 47939352 47939170 ID=MsG0480020765.01.T01:exon:8322;Parent=MsG0480020765.01.T01
Chr4 CDS 47931840 47932076 47931840 ID=MsG0480020765.01.T01:cds;Parent=MsG0480020765.01.T01
Chr4 CDS 47938901 47939101 47938901 ID=MsG0480020765.01.T01:cds;Parent=MsG0480020765.01.T01
Chr4 CDS 47939170 47939352 47939170 ID=MsG0480020765.01.T01:cds;Parent=MsG0480020765.01.T01
Gene Sequence

>MsG0480020765.01.T01

ATGGGTTCAAGAGATGTTGTTGGTTGTTCTAGTTCTGGTGGTGTTGATGAAAGTGGAGTTTCTGCAAAAGGTAGTAGTAATTCAGGTGGTTCATCTTCAATGTTGTATGGTTCAAAAGAGAAAGAGAATAGTGGTGGTGATGGAGGAATTGGGAATAACTTTTGTCTTTCTTCTTCTTCTTCTTCTCGACCAGAGTGCCAAAAGAATAAGGCTCAATTACTGTACATGCACGATGAGGTATCAAATTGGTTCATAAACGCTCGAGTCCGTGTATGGAAACCAATGGTTGAAGAAATACACATGCTTGAATCAAAAGGCACAGCAGAAGCTCAGAATCAGAACAATGATAAAAATGAGGCATGCAGAGTCGGAACGCATGAAAAGCAATTTCAGTGTTTGGAAATGGGGTCATCTTCAGGCATTAACAATGCTGAAAAGATTACACCAAATATGGATTCAACAGTGATGGGTTTTATGCCGTATCAACGTGGATCCGTGTCGCTGACTTTGGGTCTGAGACACGGTGTTGAAAGTGTACAACAGCAGCAGCAACAGTTGCAGCACGAGGTAGACCTTAGACATCAATTTGGAGAGCACATGATCCATGATTTTGTGGGTTAA

Protein sequence

>MsG0480020765.01.T01

MGSRDVVGCSSSGGVDESGVSAKGSSNSGGSSSMLYGSKEKENSGGDGGIGNNFCLSSSSSSRPECQKNKAQLLYMHDEVSNWFINARVRVWKPMVEEIHMLESKGTAEAQNQNNDKNEACRVGTHEKQFQCLEMGSSSGINNAEKITPNMDSTVMGFMPYQRGSVSLTLGLRHGVESVQQQQQQLQHEVDLRHQFGEHMIHDFVG*