AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780039008.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780039008.01.T01 MTR_7g066260 75.113 442 97 5 1 432 1 439 0.0 658
MsG0780039008.01.T01 MTR_7g066290 72.893 439 83 4 1 432 1 410 0.0 592
MsG0780039008.01.T01 MTR_7g066360 65.237 443 123 10 3 432 2 426 1.11e-174 501
MsG0780039008.01.T01 MTR_1g041315 56.444 450 169 8 3 432 2 444 1.57e-159 462
MsG0780039008.01.T01 MTR_7g066350 61.201 433 146 11 11 432 5 426 7.01e-159 459
MsG0780039008.01.T01 MTR_7g066340 58.851 435 158 7 9 432 6 430 2.55e-158 459
MsG0780039008.01.T01 MTR_7g066570 57.388 467 154 12 1 432 1 457 9.95e-158 461
MsG0780039008.01.T01 MTR_7g012680 54.897 439 171 8 3 432 2 422 7.53e-145 423
MsG0780039008.01.T01 MTR_7g066400 53.288 441 153 9 11 432 8 414 3.05e-142 417
MsG0780039008.01.T01 MTR_7g058710 49.897 487 174 14 1 439 1 465 2.18e-135 400
MsG0780039008.01.T01 MTR_7g066310 52.594 424 131 10 12 432 4 360 8.61e-127 375
MsG0780039008.01.T01 MTR_7g066580 49.890 453 155 12 21 432 1 422 3.23e-125 373
MsG0780039008.01.T01 MTR_7g066580 27.542 236 148 8 15 233 215 444 2.16e-13 72.4
MsG0780039008.01.T01 MTR_7g058700 46.966 445 138 11 27 439 531 909 2.60e-105 336
MsG0780039008.01.T01 MTR_2g029400 42.947 475 156 11 3 439 2 399 1.31e-101 311
MsG0780039008.01.T01 MTR_7g066430 42.208 462 220 12 15 432 4 462 6.23e-101 313
MsG0780039008.01.T01 MTR_7g066410 42.149 484 208 12 16 432 11 489 5.67e-99 308
MsG0780039008.01.T01 MTR_7g066410 28.794 257 150 9 3 239 271 514 1.59e-14 76.3
MsG0780039008.01.T01 MTR_7g063900 41.996 481 208 18 1 432 1 459 7.17e-93 291
MsG0780039008.01.T01 MTR_7g063660 39.270 466 227 12 14 442 8 454 5.41e-89 281
MsG0780039008.01.T01 MTR_7g066280 44.898 392 139 11 93 432 1 367 5.70e-89 279
MsG0780039008.01.T01 MTR_7g062300 40.598 468 224 17 1 432 1 450 1.57e-87 277
MsG0780039008.01.T01 MTR_7g062280 38.557 485 222 14 1 432 1 462 3.14e-87 277
MsG0780039008.01.T01 MTR_7g062280 31.602 231 124 11 15 228 266 479 7.22e-14 74.3
MsG0780039008.01.T01 MTR_7g066480 41.364 440 189 13 14 436 15 402 4.29e-85 269
MsG0780039008.01.T01 MTR_7g063880 41.720 465 209 16 3 432 2 439 4.94e-85 270
MsG0780039008.01.T01 MTR_7g063820 40.295 474 222 12 1 432 1 455 3.75e-84 269
MsG0780039008.01.T01 MTR_7g063890 40.598 468 211 15 14 432 26 475 5.13e-84 269
MsG0780039008.01.T01 MTR_7g063830 40.044 452 220 12 1 435 1 418 3.52e-81 259
MsG0780039008.01.T01 MTR_7g063920 38.462 455 203 11 6 432 2 407 3.41e-80 257
MsG0780039008.01.T01 MTR_7g063920 30.939 181 101 8 261 433 11 175 2.50e-12 69.3
MsG0780039008.01.T01 MTR_7g066490 40.749 427 194 15 15 436 16 388 2.04e-77 249
MsG0780039008.01.T01 MTR_3g065200 37.946 448 196 13 15 432 3 398 4.24e-73 239
MsG0780039008.01.T01 MTR_7g063840 36.344 465 242 12 1 432 1 444 3.94e-72 237
MsG0780039008.01.T01 MTR_4g019310 35.789 475 240 13 12 433 5 467 5.91e-72 237
MsG0780039008.01.T01 MTR_4g019310 28.395 243 135 9 11 231 262 487 2.71e-11 66.2
MsG0780039008.01.T01 MTR_1g014060 58.373 209 69 5 24 221 9 210 1.10e-70 231
MsG0780039008.01.T01 MTR_1g014060 48.026 152 69 3 291 432 210 361 1.78e-29 120
MsG0780039008.01.T01 MTR_3g007740 38.851 435 227 12 14 432 8 419 1.92e-67 224
MsG0780039008.01.T01 MTR_7g063670 37.674 430 238 9 16 432 16 428 1.20e-66 222
MsG0780039008.01.T01 MTR_4g019340 33.546 471 242 15 16 433 39 491 2.38e-64 217
MsG0780039008.01.T01 MTR_4g019340 35.135 111 66 2 2 112 290 394 1.57e-12 70.1
MsG0780039008.01.T01 MTR_4g017830 32.860 493 252 15 5 433 2 479 6.50e-63 214
MsG0780039008.01.T01 MTR_4g017830 29.362 235 137 8 15 227 267 494 8.71e-13 70.9
MsG0780039008.01.T01 MTR_4g017610 30.675 489 269 14 5 445 3 469 2.94e-58 200
MsG0780039008.01.T01 MTR_7g066680 48.193 249 101 4 212 433 38 285 6.51e-58 196
MsG0780039008.01.T01 MTR_7g066680 26.389 216 133 9 11 215 82 282 3.34e-11 65.1
MsG0780039008.01.T01 MTR_4g017440 31.772 491 253 18 8 433 7 480 3.08e-54 190
MsG0780039008.01.T01 MTR_4g017410 31.288 489 267 15 9 445 3 474 1.76e-52 186
MsG0780039008.01.T01 MTR_2g067310 58.286 175 31 3 26 200 58 190 1.19e-51 176
MsG0780039008.01.T01 MTR_4g017470 29.158 487 235 14 11 433 8 448 9.20e-44 162
MsG0780039008.01.T01 MTR_4g017550 31.020 461 222 19 42 433 18 451 5.67e-42 156
MsG0780039008.01.T01 MTR_4g017550 31.197 234 126 7 15 227 247 466 1.50e-14 76.3
MsG0780039008.01.T01 MTR_7g062270 44.974 189 90 7 1 186 1 178 1.14e-35 137
MsG0780039008.01.T01 MTR_7g063720 37.173 191 111 2 251 432 13 203 1.02e-34 130
MsG0780039008.01.T01 MTR_7g063720 28.378 222 127 8 15 228 23 220 1.02e-14 74.3
MsG0780039008.01.T01 MTR_7g066390 54.198 131 28 2 302 432 1 99 1.15e-31 119
MsG0780039008.01.T01 MTR_8g023240 27.987 318 200 8 16 324 38 335 5.49e-28 117
MsG0780039008.01.T01 MTR_7g100420 32.302 291 160 9 169 432 94 374 5.52e-22 98.6
MsG0780039008.01.T01 MTR_7g100420 61.017 59 19 1 16 70 40 98 9.86e-13 70.5
MsG0780039008.01.T01 MTR_1g115440 31.707 246 145 8 1 232 1 237 5.97e-22 95.1
MsG0780039008.01.T01 MTR_8g445860 31.224 237 131 9 15 232 13 236 1.74e-21 94.0
MsG0780039008.01.T01 MTR_0150s0010 31.855 248 141 9 1 232 1 236 1.11e-20 91.7
MsG0780039008.01.T01 MTR_4g019240 42.149 121 55 5 11 120 9 125 1.79e-18 83.6
MsG0780039008.01.T01 MTR_7g063850 30.612 196 104 6 264 432 69 259 1.25e-15 77.8
MsG0780039008.01.T01 MTR_1g115450 41.176 85 44 2 15 98 7 86 5.72e-14 69.7
MsG0780039008.01.T01 MTR_1g115455 34.286 140 72 6 1 133 1 127 9.69e-14 71.2
MsG0780039008.01.T01 MTR_7g063690 70.833 48 14 0 16 63 13 60 1.04e-12 68.6
MsG0780039008.01.T01 MTR_7g063690 32.370 173 96 6 123 288 64 222 9.03e-12 65.5
MsG0780039008.01.T01 MTR_0150s0030 37.895 95 49 3 15 104 8 97 1.31e-12 67.4
MsG0780039008.01.T01 MTR_8g445920 42.857 84 38 2 1 84 1 74 1.53e-12 64.7
MsG0780039008.01.T01 MTR_8g044890 42.857 84 38 2 1 84 1 74 1.53e-12 64.7
MsG0780039008.01.T01 MTR_8g445910 37.895 95 49 3 15 104 8 97 1.01e-11 65.9
MsG0780039008.01.T01 MTR_8g044880 37.895 95 49 3 15 104 8 97 2.31e-11 65.1
MsG0780039008.01.T01 MTR_1g115470 43.182 88 44 2 15 101 6 88 2.69e-11 65.9
MsG0780039008.01.T01 MTR_7g063870 52.727 55 26 0 9 63 25 79 3.58e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780039008.01.T01 AT5G43240 31.250 464 259 18 16 426 10 466 2.41e-45 166
MsG0780039008.01.T01 AT5G43240 31.250 464 259 18 16 426 10 466 2.41e-45 166
MsG0780039008.01.T01 AT5G43240 31.250 464 259 18 16 426 10 466 2.41e-45 166
MsG0780039008.01.T01 AT5G01150 29.694 458 274 11 15 433 9 457 5.60e-44 162
MsG0780039008.01.T01 AT5G01130 30.365 438 255 12 7 422 2 411 4.60e-43 159
MsG0780039008.01.T01 AT5G01120 29.095 464 277 15 16 433 10 467 6.46e-43 160
MsG0780039008.01.T01 AT3G09110 32.416 327 193 8 15 326 9 322 1.62e-41 152
MsG0780039008.01.T01 AT3G09120 34.653 303 169 9 12 296 3 294 2.55e-41 150
MsG0780039008.01.T01 AT3G09140 30.277 469 269 15 12 429 6 467 5.73e-41 154
MsG0780039008.01.T01 AT5G01140 28.285 449 256 14 15 429 9 425 1.34e-38 147
MsG0780039008.01.T01 AT3G09140 29.116 498 265 17 12 429 6 495 1.70e-37 145
MsG0780039008.01.T01 AT5G37320 28.145 469 271 18 25 445 19 469 2.13e-30 124
MsG0780039008.01.T01 AT5G43240 27.523 327 181 15 151 426 1 322 1.57e-11 66.2

Find 95 sgRNAs with CRISPR-Local

Find 111 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGCATTTCTTTGCAGTTAT+TGG 0.134850 7:+56692041 None:intergenic
GATCCTAAATCCTCTATTTC+TGG 0.176355 7:-56691066 MsG0780039008.01.T01:CDS
GATTTCTAAAACTGCTTATA+CGG 0.225351 7:+56691896 None:intergenic
GATGGTGTAATACTTTATTT+AGG 0.239546 7:-56690885 MsG0780039008.01.T01:CDS
GAACAAGTGAGTTAACTTTC+AGG 0.269206 7:-56691122 MsG0780039008.01.T01:CDS
TTGTTCCAATTGGCAGTATC+TGG 0.287688 7:+56691139 None:intergenic
TACACCTCCATTGAGTTTCT+AGG 0.289003 7:+56692012 None:intergenic
CAAAGTTACCTTGAGAGTTT+TGG 0.306930 7:-56692259 MsG0780039008.01.T01:CDS
CCTCCAGAAATAGAGGATTT+AGG 0.324494 7:+56691063 None:intergenic
TGGTTCTTGAGTTCAAATTC+TGG 0.330009 7:+56691159 None:intergenic
CAACATTCCAATCTGAGATT+AGG 0.337916 7:-56691464 MsG0780039008.01.T01:CDS
TTGATTGCATATATGGTTGC+AGG 0.338029 7:-56690808 MsG0780039008.01.T01:CDS
CAGAGGGCCATTAACAATTA+TGG 0.344557 7:-56691034 MsG0780039008.01.T01:CDS
GATATTGATGCAGTACGATT+TGG 0.357259 7:-56692117 MsG0780039008.01.T01:CDS
AAAGTCTGTCAGAGTAGTTT+TGG 0.360394 7:+56691524 None:intergenic
AAACTTGTTCCGAGATCATT+AGG 0.360814 7:+56691748 None:intergenic
TTCACAAAGCCATTGAAATC+AGG 0.364485 7:+56691814 None:intergenic
CAGATCTTGATGAACACTTA+TGG 0.383795 7:-56692065 MsG0780039008.01.T01:CDS
CGAGGATTGGGAGCTTTGTA+AGG 0.384736 7:-56691935 MsG0780039008.01.T01:CDS
CAGCTTTCTTACCTTCCCCT+TGG 0.391647 7:-56691322 MsG0780039008.01.T01:CDS
ATAGAGGATTTAGGATCAAC+AGG 0.395459 7:+56691072 None:intergenic
TCTGTGACCATAATTGTTAA+TGG 0.396687 7:+56691027 None:intergenic
AGCTTCTTAACATTGCCTTT+AGG 0.397252 7:-56692171 MsG0780039008.01.T01:CDS
AGCTTTCTTACCTTCCCCTT+GGG 0.401322 7:-56691321 MsG0780039008.01.T01:CDS
TATTGCAAGACTTGTGTCTA+AGG 0.402722 7:-56692145 MsG0780039008.01.T01:CDS
TCAAATTCTGGAAATATAGA+AGG 0.407750 7:+56691171 None:intergenic
AGACAAATGTCTAAGGTCTA+AGG 0.411740 7:-56691217 MsG0780039008.01.T01:CDS
GATGCTGTTTCATATCTAGA+AGG 0.414936 7:-56690973 MsG0780039008.01.T01:CDS
ATTTCCTCCACATCATTAAG+AGG 0.417058 7:+56690940 None:intergenic
GTTAACTCACTTGTTCCAAT+TGG 0.441167 7:+56691129 None:intergenic
TAGATATGAAACAGCATCAA+TGG 0.443733 7:+56690978 None:intergenic
AGAAATCAGAAATGCATTTG+TGG 0.446046 7:-56691880 MsG0780039008.01.T01:CDS
TTCCAATCCTAATCTCAGAT+TGG 0.456401 7:+56691457 None:intergenic
TTCCAATCTGAGATTAGGAT+TGG 0.456814 7:-56691459 MsG0780039008.01.T01:CDS
CATATATGGTTGCAGGGTCT+CGG 0.463595 7:-56690801 MsG0780039008.01.T01:CDS
GATTTGCCTCCTGATTTCAA+TGG 0.469147 7:-56691823 MsG0780039008.01.T01:CDS
CTTTGTAAGGGAGATATAAG+TGG 0.470692 7:-56691922 MsG0780039008.01.T01:CDS
ATTGGTGTGAAGGAGGTAAA+CGG 0.476969 7:-56690907 MsG0780039008.01.T01:CDS
ACACCTCCATTGAGTTTCTA+GGG 0.482453 7:+56692013 None:intergenic
CTCAGTTACTGACATGAAAA+CGG 0.483068 7:-56691845 MsG0780039008.01.T01:CDS
GAGATATCCTCCAGAAATAG+AGG 0.484729 7:+56691056 None:intergenic
GATTTCTATACTATGGCATC+TGG 0.487230 7:-56692312 None:intergenic
TTCACAACCATGTGATTACC+CGG 0.494042 7:+56691417 None:intergenic
TTTAGGATCAACAGGTTTCA+CGG 0.497009 7:+56691080 None:intergenic
ACTTTCAGGTTAGAAGATAG+TGG 0.502605 7:-56691108 MsG0780039008.01.T01:CDS
TGAGTTCAGACAAATGTCTA+AGG 0.510047 7:-56691224 MsG0780039008.01.T01:CDS
GAGGAAATTGTCGTTAGTAT+TGG 0.512498 7:-56690925 MsG0780039008.01.T01:CDS
AAGAACCAGATACTGCCAAT+TGG 0.513709 7:-56691144 MsG0780039008.01.T01:CDS
TTTGTCCACCAAAACTCTCA+AGG 0.524244 7:+56692251 None:intergenic
TTAGGATCAACAGGTTTCAC+GGG 0.526004 7:+56691081 None:intergenic
AATTATGGTCACAGACGACT+TGG 0.534216 7:-56691019 MsG0780039008.01.T01:CDS
TTTCTTACCTTCCCCTTGGG+AGG 0.534245 7:-56691318 MsG0780039008.01.T01:CDS
TTCATATCTAGAAGGAATGA+AGG 0.540190 7:-56690965 MsG0780039008.01.T01:CDS
TGATTTCAATGGCTTTGTGA+AGG 0.542064 7:-56691812 MsG0780039008.01.T01:CDS
CGTTAGTATTGGTGTGAAGG+AGG 0.542677 7:-56690914 MsG0780039008.01.T01:CDS
TGTCGTTAGTATTGGTGTGA+AGG 0.543326 7:-56690917 MsG0780039008.01.T01:CDS
TTTACGTTTGCTTCAGACGC+AGG 0.545267 7:-56691728 MsG0780039008.01.T01:CDS
TTTGTATGCTGAAGCAGGGA+AGG 0.547892 7:-56692214 MsG0780039008.01.T01:CDS
ACTCAACCCTAGAAACTCAA+TGG 0.548659 7:-56692019 MsG0780039008.01.T01:CDS
TATTGATGATACACCTGTGC+AGG 0.551137 7:-56691968 MsG0780039008.01.T01:CDS
TTTGTAAGGGAGATATAAGT+GGG 0.552990 7:-56691921 MsG0780039008.01.T01:CDS
AGTCTTGCAATAGTACCTAA+AGG 0.556108 7:+56692156 None:intergenic
TGATTGCATATATGGTTGCA+GGG 0.557068 7:-56690807 MsG0780039008.01.T01:CDS
GAGAAGAAAATCAAACAGAA+AGG 0.565246 7:-56691388 MsG0780039008.01.T01:CDS
TCAACATCTGCTTTGACGAA+CGG 0.571154 7:-56690756 MsG0780039008.01.T01:CDS
TTGTTCAACTGATTCAGTTG+CGG 0.571619 7:+56692287 None:intergenic
CAAAACTCCTCCCAAGGGGA+AGG 0.573835 7:+56691311 None:intergenic
TTACGTTTGCTTCAGACGCA+GGG 0.577110 7:-56691727 MsG0780039008.01.T01:CDS
ATGTGATTACCCGGGTCAGA+TGG 0.577443 7:+56691426 None:intergenic
CATTTGCAAAACTCCTCCCA+AGG 0.586395 7:+56691305 None:intergenic
ATCTGACCCGGGTAATCACA+TGG 0.589753 7:-56691424 MsG0780039008.01.T01:CDS
TGTGTGATGCCTAATGATCT+CGG 0.591344 7:-56691757 MsG0780039008.01.T01:CDS
ATTTGCAAAACTCCTCCCAA+GGG 0.593798 7:+56691306 None:intergenic
ACTAACCTATGTACTGGTTG+AGG 0.600521 7:+56690733 None:intergenic
GAAGGTCCCTCTTAATGATG+TGG 0.601475 7:-56690947 MsG0780039008.01.T01:CDS
AAAGGACTTACCATCTGACC+CGG 0.601529 7:-56691436 MsG0780039008.01.T01:CDS
GAGGATTGGGAGCTTTGTAA+GGG 0.602924 7:-56691934 MsG0780039008.01.T01:CDS
TAGTGAACTAACCTATGTAC+TGG 0.608380 7:+56690727 None:intergenic
ACAGCATCAATGGATGACAT+TGG 0.609060 7:+56690988 None:intergenic
TTTCCTCCACATCATTAAGA+GGG 0.611469 7:+56690941 None:intergenic
ATCTGAGATTAGGATTGGAA+AGG 0.612389 7:-56691454 MsG0780039008.01.T01:CDS
CCTAAATCCTCTATTTCTGG+AGG 0.628731 7:-56691063 MsG0780039008.01.T01:CDS
AACGGCCTCAACCAGTACAT+AGG 0.634113 7:-56690738 MsG0780039008.01.T01:CDS
ACAAAGCCATTGAAATCAGG+AGG 0.636874 7:+56691817 None:intergenic
GGTCCCTCTTAATGATGTGG+AGG 0.640233 7:-56690944 MsG0780039008.01.T01:CDS
GTTCGTCAAAGCAGATGTTG+AGG 0.643372 7:+56690758 None:intergenic
GCAGGGACTAAATGATATTG+CGG 0.651267 7:-56691710 MsG0780039008.01.T01:CDS
TTTCTGGAGGATATCTCAGA+GGG 0.659388 7:-56691050 MsG0780039008.01.T01:CDS
TCACAACCATGTGATTACCC+GGG 0.667934 7:+56691418 None:intergenic
ATTTCTGGAGGATATCTCAG+AGG 0.687672 7:-56691051 MsG0780039008.01.T01:CDS
GCAACTGAATCAGTTGAACA+AGG 0.689938 7:-56692285 MsG0780039008.01.T01:CDS
CAACCCTAGAAACTCAATGG+AGG 0.702193 7:-56692016 MsG0780039008.01.T01:CDS
GTGTGAAGGAGGTAAACGGA+TGG 0.702398 7:-56690903 MsG0780039008.01.T01:CDS
AAGGACTTACCATCTGACCC+GGG 0.713753 7:-56691435 MsG0780039008.01.T01:CDS
TTTGCAAAACTCCTCCCAAG+GGG 0.713756 7:+56691307 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAACTGCTACTTTTATAATT+CGG - Chr7:56691198-56691217 MsG0780039008.01.T01:CDS 20.0%
!!! CAATATTTTGATTGCATATA+TGG - Chr7:56692172-56692191 MsG0780039008.01.T01:CDS 20.0%
!!! TCTTTGTTGTTGATTATTTT+AGG - Chr7:56691368-56691387 MsG0780039008.01.T01:CDS 20.0%
! GAATAAGTATTTATTTGTGC+AGG - Chr7:56691410-56691429 MsG0780039008.01.T01:CDS 25.0%
!! GATGGTGTAATACTTTATTT+AGG - Chr7:56692102-56692121 MsG0780039008.01.T01:CDS 25.0%
!! TCAAATTCTGGAAATATAGA+AGG + Chr7:56691819-56691838 None:intergenic 25.0%
!!! AACTGCTACTTTTATAATTC+GGG - Chr7:56691199-56691218 MsG0780039008.01.T01:CDS 25.0%
!!! ATGTATCATGAAGTTTTGTT+TGG + Chr7:56692291-56692310 None:intergenic 25.0%
!!! GATTTCTAAAACTGCTTATA+CGG + Chr7:56691094-56691113 None:intergenic 25.0%
AACACTAGTTATCAACAAGA+AGG - Chr7:56691313-56691332 MsG0780039008.01.T01:CDS 30.0%
AGAAATCAGAAATGCATTTG+TGG - Chr7:56691107-56691126 MsG0780039008.01.T01:CDS 30.0%
GAGAAGAAAATCAAACAGAA+AGG - Chr7:56691599-56691618 MsG0780039008.01.T01:intron 30.0%
TAGATATGAAACAGCATCAA+TGG + Chr7:56692012-56692031 None:intergenic 30.0%
TAGCATTTCTTTGCAGTTAT+TGG + Chr7:56690949-56690968 None:intergenic 30.0%
TCTGTGACCATAATTGTTAA+TGG + Chr7:56691963-56691982 None:intergenic 30.0%
TTCATATCTAGAAGGAATGA+AGG - Chr7:56692022-56692041 MsG0780039008.01.T01:CDS 30.0%
TTTGTAAGGGAGATATAAGT+GGG - Chr7:56691066-56691085 MsG0780039008.01.T01:CDS 30.0%
ACTAGTTATCAACAAGAAGG+AGG - Chr7:56691316-56691335 MsG0780039008.01.T01:CDS 35.0%
AGCTTCTTAACATTGCCTTT+AGG - Chr7:56690816-56690835 MsG0780039008.01.T01:CDS 35.0%
AGTCTTGCAATAGTACCTAA+AGG + Chr7:56690834-56690853 None:intergenic 35.0%
ATTTCCTCCACATCATTAAG+AGG + Chr7:56692050-56692069 None:intergenic 35.0%
CAGATCTTGATGAACACTTA+TGG - Chr7:56690922-56690941 MsG0780039008.01.T01:CDS 35.0%
CTCAGTTACTGACATGAAAA+CGG - Chr7:56691142-56691161 MsG0780039008.01.T01:CDS 35.0%
CTTTGTAAGGGAGATATAAG+TGG - Chr7:56691065-56691084 MsG0780039008.01.T01:CDS 35.0%
GAACAAGTGAGTTAACTTTC+AGG - Chr7:56691865-56691884 MsG0780039008.01.T01:CDS 35.0%
GAGGAAATTGTCGTTAGTAT+TGG - Chr7:56692062-56692081 MsG0780039008.01.T01:CDS 35.0%
GATATTGATGCAGTACGATT+TGG - Chr7:56690870-56690889 MsG0780039008.01.T01:CDS 35.0%
GATCCTAAATCCTCTATTTC+TGG - Chr7:56691921-56691940 MsG0780039008.01.T01:CDS 35.0%
GTTAACTCACTTGTTCCAAT+TGG + Chr7:56691861-56691880 None:intergenic 35.0%
TAGTGAACTAACCTATGTAC+TGG + Chr7:56692263-56692282 None:intergenic 35.0%
TATTGCAAGACTTGTGTCTA+AGG - Chr7:56690842-56690861 MsG0780039008.01.T01:CDS 35.0%
TGAGTTCAGACAAATGTCTA+AGG - Chr7:56691763-56691782 MsG0780039008.01.T01:CDS 35.0%
TGATTGCATATATGGTTGCA+GGG - Chr7:56692180-56692199 MsG0780039008.01.T01:CDS 35.0%
TGGTTCTTGAGTTCAAATTC+TGG + Chr7:56691831-56691850 None:intergenic 35.0%
TTCACAAAGCCATTGAAATC+AGG + Chr7:56691176-56691195 None:intergenic 35.0%
TTCCAATCCTAATCTCAGAT+TGG + Chr7:56691533-56691552 None:intergenic 35.0%
TTGATTGCATATATGGTTGC+AGG - Chr7:56692179-56692198 MsG0780039008.01.T01:CDS 35.0%
TTTCCTCCACATCATTAAGA+GGG + Chr7:56692049-56692068 None:intergenic 35.0%
! AAACTTGTTCCGAGATCATT+AGG + Chr7:56691242-56691261 None:intergenic 35.0%
! AAAGTCTGTCAGAGTAGTTT+TGG + Chr7:56691466-56691485 None:intergenic 35.0%
! AGACAAATGTCTAAGGTCTA+AGG - Chr7:56691770-56691789 MsG0780039008.01.T01:CDS 35.0%
! ATAGAGGATTTAGGATCAAC+AGG + Chr7:56691918-56691937 None:intergenic 35.0%
! ATCTGAGATTAGGATTGGAA+AGG - Chr7:56691533-56691552 MsG0780039008.01.T01:CDS 35.0%
! CAAAGTTACCTTGAGAGTTT+TGG - Chr7:56690728-56690747 MsG0780039008.01.T01:CDS 35.0%
! CAACATTCCAATCTGAGATT+AGG - Chr7:56691523-56691542 MsG0780039008.01.T01:CDS 35.0%
! TTCCAATCTGAGATTAGGAT+TGG - Chr7:56691528-56691547 MsG0780039008.01.T01:CDS 35.0%
! TTGTTCAACTGATTCAGTTG+CGG + Chr7:56690703-56690722 None:intergenic 35.0%
! TTTAGGATCAACAGGTTTCA+CGG + Chr7:56691910-56691929 None:intergenic 35.0%
!! AAAGTTTTGTATGCTGAAGC+AGG - Chr7:56690768-56690787 MsG0780039008.01.T01:CDS 35.0%
!! AAGTTTTGTATGCTGAAGCA+GGG - Chr7:56690769-56690788 MsG0780039008.01.T01:CDS 35.0%
!! ACTTTCAGGTTAGAAGATAG+TGG - Chr7:56691879-56691898 MsG0780039008.01.T01:CDS 35.0%
!! GATGCTGTTTCATATCTAGA+AGG - Chr7:56692014-56692033 MsG0780039008.01.T01:CDS 35.0%
!! TGATTTCAATGGCTTTGTGA+AGG - Chr7:56691175-56691194 MsG0780039008.01.T01:CDS 35.0%
AAGAACCAGATACTGCCAAT+TGG - Chr7:56691843-56691862 MsG0780039008.01.T01:CDS 40.0%
AATTATGGTCACAGACGACT+TGG - Chr7:56691968-56691987 MsG0780039008.01.T01:CDS 40.0%
ACAAAGCCATTGAAATCAGG+AGG + Chr7:56691173-56691192 None:intergenic 40.0%
ACACCTCCATTGAGTTTCTA+GGG + Chr7:56690977-56690996 None:intergenic 40.0%
ACAGCATCAATGGATGACAT+TGG + Chr7:56692002-56692021 None:intergenic 40.0%
ACTCAACCCTAGAAACTCAA+TGG - Chr7:56690968-56690987 MsG0780039008.01.T01:CDS 40.0%
ATTGGTGTGAAGGAGGTAAA+CGG - Chr7:56692080-56692099 MsG0780039008.01.T01:CDS 40.0%
ATTTGCAAAACTCCTCCCAA+GGG + Chr7:56691684-56691703 None:intergenic 40.0%
CAGAGGGCCATTAACAATTA+TGG - Chr7:56691953-56691972 MsG0780039008.01.T01:CDS 40.0%
CCTCCAGAAATAGAGGATTT+AGG + Chr7:56691927-56691946 None:intergenic 40.0%
GAGATATCCTCCAGAAATAG+AGG + Chr7:56691934-56691953 None:intergenic 40.0%
GATTTGCCTCCTGATTTCAA+TGG - Chr7:56691164-56691183 MsG0780039008.01.T01:CDS 40.0%
GCAACTGAATCAGTTGAACA+AGG - Chr7:56690702-56690721 MsG0780039008.01.T01:CDS 40.0%
GCAGGGACTAAATGATATTG+CGG - Chr7:56691277-56691296 MsG0780039008.01.T01:CDS 40.0%
TACACCTCCATTGAGTTTCT+AGG + Chr7:56690978-56690997 None:intergenic 40.0%
TCAACATCTGCTTTGACGAA+CGG - Chr7:56692231-56692250 MsG0780039008.01.T01:CDS 40.0%
TGTGTGATGCCTAATGATCT+CGG - Chr7:56691230-56691249 MsG0780039008.01.T01:CDS 40.0%
TTAGGATCAACAGGTTTCAC+GGG + Chr7:56691909-56691928 None:intergenic 40.0%
TTCACAACCATGTGATTACC+CGG + Chr7:56691573-56691592 None:intergenic 40.0%
TTGTTCCAATTGGCAGTATC+TGG + Chr7:56691851-56691870 None:intergenic 40.0%
TTTGTCCACCAAAACTCTCA+AGG + Chr7:56690739-56690758 None:intergenic 40.0%
! ATTTCTGGAGGATATCTCAG+AGG - Chr7:56691936-56691955 MsG0780039008.01.T01:CDS 40.0%
! GGAGTTTTGCAAATGCTAGA+AGG - Chr7:56691690-56691709 MsG0780039008.01.T01:CDS 40.0%
! TATTGATGATACACCTGTGC+AGG - Chr7:56691019-56691038 MsG0780039008.01.T01:CDS 40.0%
! TTTCTGGAGGATATCTCAGA+GGG - Chr7:56691937-56691956 MsG0780039008.01.T01:CDS 40.0%
!! ACTAACCTATGTACTGGTTG+AGG + Chr7:56692257-56692276 None:intergenic 40.0%
!! AGTTACCTTGAGAGTTTTGG+TGG - Chr7:56690731-56690750 MsG0780039008.01.T01:CDS 40.0%
!! CCTAAATCCTCTATTTCTGG+AGG - Chr7:56691924-56691943 MsG0780039008.01.T01:CDS 40.0%
!! TGTCGTTAGTATTGGTGTGA+AGG - Chr7:56692070-56692089 MsG0780039008.01.T01:CDS 40.0%
!!! AGGTTTTTTTGTGCGAGGAT+TGG - Chr7:56691039-56691058 MsG0780039008.01.T01:CDS 40.0%
!!! GGTTTTTTTGTGCGAGGATT+GGG - Chr7:56691040-56691059 MsG0780039008.01.T01:CDS 40.0%
AAAGGACTTACCATCTGACC+CGG - Chr7:56691551-56691570 MsG0780039008.01.T01:CDS 45.0%
AGCTTTCTTACCTTCCCCTT+GGG - Chr7:56691666-56691685 MsG0780039008.01.T01:intron 45.0%
CAACCCTAGAAACTCAATGG+AGG - Chr7:56690971-56690990 MsG0780039008.01.T01:CDS 45.0%
CATATATGGTTGCAGGGTCT+CGG - Chr7:56692186-56692205 MsG0780039008.01.T01:CDS 45.0%
CATTTGCAAAACTCCTCCCA+AGG + Chr7:56691685-56691704 None:intergenic 45.0%
GAAGGTCCCTCTTAATGATG+TGG - Chr7:56692040-56692059 MsG0780039008.01.T01:CDS 45.0%
GTTCGTCAAAGCAGATGTTG+AGG + Chr7:56692232-56692251 None:intergenic 45.0%
TCACAACCATGTGATTACCC+GGG + Chr7:56691572-56691591 None:intergenic 45.0%
TCGCACAAAAAAACCTGCAC+AGG + Chr7:56691035-56691054 None:intergenic 45.0%
TTACGTTTGCTTCAGACGCA+GGG - Chr7:56691260-56691279 MsG0780039008.01.T01:CDS 45.0%
TTTACGTTTGCTTCAGACGC+AGG - Chr7:56691259-56691278 MsG0780039008.01.T01:CDS 45.0%
TTTGCAAAACTCCTCCCAAG+GGG + Chr7:56691683-56691702 None:intergenic 45.0%
TTTGTATGCTGAAGCAGGGA+AGG - Chr7:56690773-56690792 MsG0780039008.01.T01:CDS 45.0%
! GAGGATTGGGAGCTTTGTAA+GGG - Chr7:56691053-56691072 MsG0780039008.01.T01:CDS 45.0%
!! CGTTAGTATTGGTGTGAAGG+AGG - Chr7:56692073-56692092 MsG0780039008.01.T01:CDS 45.0%
!!! GGTTTTGTTTGCTACAGCAG+AGG - Chr7:56691620-56691639 MsG0780039008.01.T01:intron 45.0%
!!! TGTGCAGGTTTTTTTGTGCG+AGG - Chr7:56691034-56691053 MsG0780039008.01.T01:CDS 45.0%
AACGGCCTCAACCAGTACAT+AGG - Chr7:56692249-56692268 MsG0780039008.01.T01:CDS 50.0%
AAGGACTTACCATCTGACCC+GGG - Chr7:56691552-56691571 MsG0780039008.01.T01:CDS 50.0%
ATCTGACCCGGGTAATCACA+TGG - Chr7:56691563-56691582 MsG0780039008.01.T01:intron 50.0%
ATGTGATTACCCGGGTCAGA+TGG + Chr7:56691564-56691583 None:intergenic 50.0%
CAGCTTTCTTACCTTCCCCT+TGG - Chr7:56691665-56691684 MsG0780039008.01.T01:intron 50.0%
GGTCCCTCTTAATGATGTGG+AGG - Chr7:56692043-56692062 MsG0780039008.01.T01:CDS 50.0%
GTGTGAAGGAGGTAAACGGA+TGG - Chr7:56692084-56692103 MsG0780039008.01.T01:CDS 50.0%
TTTCTTACCTTCCCCTTGGG+AGG - Chr7:56691669-56691688 MsG0780039008.01.T01:intron 50.0%
! CGAGGATTGGGAGCTTTGTA+AGG - Chr7:56691052-56691071 MsG0780039008.01.T01:CDS 50.0%
CAAAACTCCTCCCAAGGGGA+AGG + Chr7:56691679-56691698 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
Chr7 gene 56690687 56692322 56690687 ID=MsG0780039008.01;Name=MsG0780039008.01
Chr7 mRNA 56690687 56692322 56690687 ID=MsG0780039008.01.T01;Parent=MsG0780039008.01;Name=MsG0780039008.01.T01;_AED=0.50;_eAED=0.57;_QI=0|0|0|1|1|1|2|0|507
Chr7 exon 56691690 56692322 56691690 ID=MsG0780039008.01.T01:exon:8116;Parent=MsG0780039008.01.T01
Chr7 exon 56690687 56691577 56690687 ID=MsG0780039008.01.T01:exon:8115;Parent=MsG0780039008.01.T01
Chr7 CDS 56691690 56692322 56691690 ID=MsG0780039008.01.T01:cds;Parent=MsG0780039008.01.T01
Chr7 CDS 56690687 56691577 56690687 ID=MsG0780039008.01.T01:cds;Parent=MsG0780039008.01.T01
Gene Sequence

>MsG0780039008.01.T01

ATGGCATCTGGCACCGCAACTGAATCAGTTGAACAAGGTGACAAAGTTACCTTGAGAGTTTTGGTGGACAAAGAAAAGAACAAAGTTTTGTATGCTGAAGCAGGGAAGGATTTTGTTGATGCTCTTTTCAGCTTCTTAACATTGCCTTTAGGTACTATTGCAAGACTTGTGTCTAAGGAGTCAGATATTGATGCAGTACGATTTGGCAGCATTAGTTCACTGTATCAAAGTGTGTCAGATCTTGATGAACACTTATGGTCCAATAACTGCAAAGAAATGCTACTCAACCCTAGAAACTCAATGGAGGTGTATTGTCAACAGCTCAAGCTGAATATTGATGATACACCTGTGCAGGTTTTTTTGTGCGAGGATTGGGAGCTTTGTAAGGGAGATATAAGTGGGAGCCGTATAAGCAGTTTTAGAAATCAGAAATGCATTTGTGGAAAGCTTTTGAACTCAGTTACTGACATGAAAACGGATTTGCCTCCTGATTTCAATGGCTTTGTGAAGGAAACTGCTACTTTTATAATTCGGGATGATCTTTGTGTGATGCCTAATGATCTCGGAACAAGTTTACGTTTGCTTCAGACGCAGGGACTAAATGATATTGCGGATGTTGAGAAAAAAACACTAGTAGTTGATCTTCTCAAATTGTCGTTGCTTTCCAAAACTACTCTGACAGACTTTATCTTTAAAAATACGAAATTTCTTGCTAAATCAAAATCAACATTCCAATCTGAGATTAGGATTGGAAAGGACTTACCATCTGACCCGGGTAATCACATGGTTGTGAAAGTACTGAGAAGAAAATCAAACAGAAAGGTTTTGTTTGCTACAGCAGAGGAAGATTTTGCAGACTTTCTTTTCAGCTTTCTTACCTTCCCCTTGGGAGGAGTTTTGCAAATGCTAGAAGGATTATCTTCTTTAAGCAGCATTGATGTTTTATATACAAGCATGACTGAGTTGAGTTCAGACAAATGTCTAAGGTCTAAGGAACTCAAAGATGAGTTAGCTACGCCTTCTATATTTCCAGAATTTGAACTCAAGAACCAGATACTGCCAATTGGAACAAGTGAGTTAACTTTCAGGTTAGAAGATAGTGGTAAACCCGTGAAACCTGTTGATCCTAAATCCTCTATTTCTGGAGGATATCTCAGAGGGCCATTAACAATTATGGTCACAGACGACTTGGTTGTGACTCCAATGTCATCCATTGATGCTGTTTCATATCTAGAAGGAATGAAGGTCCCTCTTAATGATGTGGAGGAAATTGTCGTTAGTATTGGTGTGAAGGAGGTAAACGGATGGTGTAATACTTTATTTAGGACATTCTTTCATTCTAATATTTCTTGTTTCAGACTCGTAACAACTAACAATATTTTGATTGCATATATGGTTGCAGGGTCTCGGCATACTAAAAGCTTCACTGACCTCAACATCTGCTTTGACGAACGGCCTCAACCAGTACATAGGTTAGTTCACTATTCAACCAAACAAAACTTCATGATACATTATTGTTTGTAA
Protein sequence

>MsG0780039008.01.T01

MASGTATESVEQGDKVTLRVLVDKEKNKVLYAEAGKDFVDALFSFLTLPLGTIARLVSKESDIDAVRFGSISSLYQSVSDLDEHLWSNNCKEMLLNPRNSMEVYCQQLKLNIDDTPVQVFLCEDWELCKGDISGSRISSFRNQKCICGKLLNSVTDMKTDLPPDFNGFVKETATFIIRDDLCVMPNDLGTSLRLLQTQGLNDIADVEKKTLVVDLLKLSLLSKTTLTDFIFKNTKFLAKSKSTFQSEIRIGKDLPSDPGNHMVVKVLRRKSNRKVLFATAEEDFADFLFSFLTFPLGGVLQMLEGLSSLSSIDVLYTSMTELSSDKCLRSKELKDELATPSIFPEFELKNQILPIGTSELTFRLEDSGKPVKPVDPKSSISGGYLRGPLTIMVTDDLVVTPMSSIDAVSYLEGMKVPLNDVEEIVVSIGVKEVNGWCNTLFRTFFHSNISCFRLVTTNNILIAYMVAGSRHTKSFTDLNICFDERPQPVHRLVHYSTKQNFMIHYCL*