AlfalfaGEDB | MsG0480018548.01

M. sativa cultivar ZhongmuNo.1 / MsG0480018548.01

KEGG: -
GO: -
PFAM: PF05056

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480018548.01.T01	AES86950.1	68.386	446	79	8	16	422	1	423	0	564

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480018548.01.T01	G7JQ74	68.386	446	79	8	16	422	1	423	0.0	564

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0480018545.01	MsG0480018548.01	0.915105	8.735621e-85	2.245770e-80
MsG0480018548.01	MsG0480018763.01	0.868076	8.541529e-66	3.049964e-62

PPI

Gene1	Gene2	Type
MsG0480018548.01	MsG0480018553.01	PPI
MsG0480018548.01	MsG0780039063.01	PPI
MsG0480018548.01	MsG0780039016.01	PPI
MsG0780039018.01	MsG0480018548.01	PPI
MsG0480018548.01	MsG0480018545.01	PPI
MsG0480018548.01	MsG0780039009.01	PPI
MsG0480018548.01	MsG0480018739.01	PPI
MsG0480018548.01	MsG0780036389.01	PPI
MsG0480018548.01	MsG0780038994.01	PPI
MsG0480018548.01	MsG0780039038.01	PPI
MsG0480018548.01	MsG0480018744.01	PPI
MsG0480018548.01	MsG0480018719.01	PPI
MsG0480018548.01	MsG0480018763.01	PPI
MsG0480018553.01	MsG0480018548.01	PPI
MsG0480018548.01	MsG0480018721.01	PPI
MsG0480018548.01	MsG0480018760.01	PPI
MsG0480018548.01	MsG0480018551.01	PPI
MsG0480018548.01	MsG0780038878.01	PPI
MsG0480018548.01	MsG0780038997.01	PPI
MsG0480018548.01	MsG0480018751.01	PPI
MsG0480018548.01	MsG0480018558.01	PPI
MsG0480018719.01	MsG0480018548.01	PPI
MsG0480018548.01	MsG0480018724.01	PPI
MsG0480018548.01	MsG0480018550.01	PPI
MsG0480018548.01	MsG0780039026.01	PPI
MsG0480018548.01	MsG0480018748.01	PPI
MsG0480018548.01	MsG0480018860.01	PPI
MsG0480018548.01	MsG0480018728.01	PPI
MsG0480018548.01	MsG0780039034.01	PPI
MsG0480018548.01	MsG0480018861.01	PPI
MsG0780039010.01	MsG0480018548.01	PPI
MsG0480018554.01	MsG0480018548.01	PPI
MsG0480018548.01	MsG0480018784.01	PPI
MsG0480018548.01	MsG0780039008.01	PPI
MsG0480018760.01	MsG0480018548.01	PPI
MsG0480018548.01	MsG0480018736.01	PPI
MsG0480018548.01	MsG0480018720.01	PPI
MsG0480018548.01	MsG0480018857.01	PPI
MsG0480018548.01	MsG0480018747.01	PPI
MsG0480018724.01	MsG0480018548.01	PPI
MsG0480018548.01	MsG0480018735.01	PPI
MsG0480018548.01	MsG0480018867.01	PPI
MsG0480018548.01	MsG0780039039.01	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480018548.01.T01	MTR_4g017410	68.386	446	79	8	16	422	1	423	0.0	564
MsG0480018548.01.T01	MTR_4g017440	65.760	441	115	8	16	421	1	440	0.0	523
MsG0480018548.01.T01	MTR_4g017830	60.449	445	131	9	16	421	1	439	2.83e-175	501
MsG0480018548.01.T01	MTR_4g017610	61.521	434	122	10	16	421	1	417	4.75e-171	488
MsG0480018548.01.T01	MTR_4g017550	62.919	418	110	8	41	421	3	412	4.08e-170	485
MsG0480018548.01.T01	MTR_4g017550	26.210	248	133	8	30	255	250	469	9.07e-11	63.9
MsG0480018548.01.T01	MTR_4g019340	63.420	421	123	11	26	421	37	451	8.71e-166	476
MsG0480018548.01.T01	MTR_4g019340	27.542	236	149	4	12	247	288	501	4.64e-13	71.2
MsG0480018548.01.T01	MTR_4g017470	59.424	451	97	8	16	422	1	409	2.07e-160	461
MsG0480018548.01.T01	MTR_4g019310	40.045	442	214	13	16	421	1	427	7.90e-88	276
MsG0480018548.01.T01	MTR_7g066350	36.729	373	191	11	23	371	5	356	5.88e-60	202
MsG0480018548.01.T01	MTR_7g066350	34.921	126	69	2	285	397	9	134	8.37e-11	63.9
MsG0480018548.01.T01	MTR_7g058710	34.884	387	198	10	16	379	1	356	4.59e-59	200
MsG0480018548.01.T01	MTR_7g066340	34.074	405	217	13	16	396	1	379	6.62e-57	194
MsG0480018548.01.T01	MTR_7g066340	26.271	236	132	5	20	255	256	449	3.18e-13	71.6
MsG0480018548.01.T01	MTR_7g066260	33.744	406	223	12	13	393	1	385	2.59e-56	193
MsG0480018548.01.T01	MTR_7g063900	31.390	446	235	13	13	418	1	415	8.08e-53	184
MsG0480018548.01.T01	MTR_7g066570	34.772	394	199	14	16	382	1	363	1.24e-52	185
MsG0480018548.01.T01	MTR_7g066570	25.820	244	148	8	24	255	254	476	4.42e-12	68.2
MsG0480018548.01.T01	MTR_7g012680	33.416	401	184	15	13	382	1	349	3.67e-51	179
MsG0480018548.01.T01	MTR_1g041315	34.211	418	216	17	13	396	1	393	5.54e-49	174
MsG0480018548.01.T01	MTR_7g063660	36.336	333	183	10	28	354	10	319	1.10e-48	172
MsG0480018548.01.T01	MTR_7g063660	37.288	118	58	4	277	380	1	116	2.58e-13	72.0
MsG0480018548.01.T01	MTR_7g063890	30.635	457	247	14	1	417	4	430	3.31e-48	172
MsG0480018548.01.T01	MTR_7g066290	34.286	385	207	10	14	374	3	365	3.58e-48	170
MsG0480018548.01.T01	MTR_7g066410	32.538	461	223	18	28	421	11	450	2.32e-46	167
MsG0480018548.01.T01	MTR_7g066410	27.165	254	150	9	16	255	276	508	4.67e-11	65.1
MsG0480018548.01.T01	MTR_7g066430	32.105	380	224	11	28	388	5	369	4.38e-46	166
MsG0480018548.01.T01	MTR_7g066430	26.721	247	153	7	21	255	251	481	7.79e-13	70.5
MsG0480018548.01.T01	MTR_7g066360	35.372	376	205	13	15	374	2	355	3.09e-45	163
MsG0480018548.01.T01	MTR_7g063880	32.251	431	220	18	13	410	1	392	4.11e-45	163
MsG0480018548.01.T01	MTR_7g062300	32.071	396	203	13	16	381	1	360	1.08e-43	159
MsG0480018548.01.T01	MTR_7g066580	33.243	370	178	12	33	382	1	321	4.82e-43	157
MsG0480018548.01.T01	MTR_7g066400	31.034	406	216	14	16	402	1	361	1.23e-42	155
MsG0480018548.01.T01	MTR_7g062280	32.360	411	204	16	16	385	1	378	2.77e-42	155
MsG0480018548.01.T01	MTR_7g063840	30.679	427	239	14	22	419	5	403	5.55e-42	154
MsG0480018548.01.T01	MTR_7g063830	31.172	401	229	13	16	395	1	375	1.77e-41	152
MsG0480018548.01.T01	MTR_4g019240	63.415	123	40	3	16	137	1	119	7.43e-41	144
MsG0480018548.01.T01	MTR_7g058700	32.312	359	161	11	37	362	529	838	9.28e-41	155
MsG0480018548.01.T01	MTR_7g063820	34.336	399	203	17	16	388	1	366	2.48e-40	150
MsG0480018548.01.T01	MTR_7g066480	34.535	333	183	9	28	348	17	326	5.80e-40	148
MsG0480018548.01.T01	MTR_7g066310	30.491	387	166	15	28	396	8	309	2.42e-33	129
MsG0480018548.01.T01	MTR_3g065200	27.404	416	220	12	28	421	4	359	9.96e-33	129
MsG0480018548.01.T01	MTR_7g063920	28.272	382	207	12	16	385	1	327	1.25e-32	128
MsG0480018548.01.T01	MTR_2g029400	30.214	374	171	10	23	387	10	302	1.29e-32	127
MsG0480018548.01.T01	MTR_3g007740	30.564	337	187	9	23	347	5	306	1.05e-31	125
MsG0480018548.01.T01	MTR_7g063670	30.347	346	192	10	16	347	4	314	4.05e-30	121
MsG0480018548.01.T01	MTR_7g066490	31.231	333	178	12	28	347	17	311	1.71e-27	113
MsG0480018548.01.T01	MTR_7g066280	30.705	241	129	8	116	347	1	212	2.87e-21	95.5
MsG0480018548.01.T01	MTR_7g066280	25.287	261	153	6	20	255	143	386	1.39e-14	75.5
MsG0480018548.01.T01	MTR_1g014060	32.479	234	121	10	36	255	9	219	9.85e-21	93.6
MsG0480018548.01.T01	MTR_8g445860	30.040	253	128	11	25	256	11	235	5.45e-18	83.2
MsG0480018548.01.T01	MTR_8g445860	42.169	83	40	1	281	355	9	91	2.17e-13	70.1
MsG0480018548.01.T01	MTR_7g062270	34.314	204	103	10	16	209	1	183	1.48e-17	84.3
MsG0480018548.01.T01	MTR_1g115440	28.627	255	149	9	16	256	1	236	4.29e-17	80.9
MsG0480018548.01.T01	MTR_1g115440	31.034	116	65	1	280	380	6	121	3.35e-11	63.5
MsG0480018548.01.T01	MTR_7g066680	33.750	160	89	3	236	382	37	192	4.29e-16	79.3
MsG0480018548.01.T01	MTR_0150s0010	27.917	240	147	7	28	256	11	235	1.79e-15	75.9
MsG0480018548.01.T01	MTR_0150s0010	40.476	84	42	1	280	355	5	88	1.90e-12	67.0
MsG0480018548.01.T01	MTR_8g023240	22.554	368	222	11	27	367	37	368	2.05e-15	78.6
MsG0480018548.01.T01	MTR_6g006800	76.596	47	10	1	16	62	1	46	2.88e-15	70.5
MsG0480018548.01.T01	MTR_1g115450	41.667	84	41	1	280	355	2	85	3.63e-14	69.7
MsG0480018548.01.T01	MTR_1g115455	40.230	87	44	1	277	355	1	87	6.22e-14	71.2
MsG0480018548.01.T01	MTR_1g115455	27.755	245	137	7	28	256	10	230	2.47e-12	66.6
MsG0480018548.01.T01	MTR_8g445920	42.647	68	39	0	280	347	5	72	7.51e-14	67.8
MsG0480018548.01.T01	MTR_8g044890	42.647	68	39	0	280	347	5	72	7.51e-14	67.8
MsG0480018548.01.T01	MTR_0150s0030	37.778	90	46	2	280	360	3	91	2.07e-12	66.6
MsG0480018548.01.T01	MTR_7g063720	31.897	116	67	2	275	378	10	125	2.56e-12	66.6
MsG0480018548.01.T01	MTR_8g445910	38.889	90	45	2	280	360	3	91	7.80e-12	65.9
MsG0480018548.01.T01	MTR_7g100420	44.444	63	35	0	27	89	39	101	1.44e-11	66.2
MsG0480018548.01.T01	MTR_8g044880	42.647	68	39	0	280	347	3	70	1.54e-11	65.1

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480018548.01.T01	AT5G01130	33.005	406	235	14	24	421	6	382	2.48e-49	174
MsG0480018548.01.T01	AT3G09110	34.718	337	184	12	24	347	6	319	1.28e-45	161
MsG0480018548.01.T01	AT5G01120	31.395	430	243	15	24	415	6	421	3.61e-45	164
MsG0480018548.01.T01	AT5G01150	32.653	343	195	10	21	347	3	325	1.19e-43	159
MsG0480018548.01.T01	AT3G09140	31.266	387	212	14	24	378	6	370	6.23e-42	155
MsG0480018548.01.T01	AT5G43240	33.333	375	208	13	28	380	10	364	6.74e-41	152
MsG0480018548.01.T01	AT5G43240	33.333	375	208	13	28	380	10	364	6.74e-41	152
MsG0480018548.01.T01	AT5G43240	33.333	375	208	13	28	380	10	364	6.74e-41	152
MsG0480018548.01.T01	AT3G09120	33.832	334	180	13	24	339	3	313	7.31e-41	147
MsG0480018548.01.T01	AT5G01140	30.676	414	217	14	30	415	12	383	3.41e-38	144
MsG0480018548.01.T01	AT3G09140	28.986	414	214	15	24	378	6	398	1.03e-36	141
MsG0480018548.01.T01	AT5G37320	29.058	382	228	13	22	379	3	365	2.72e-31	125
MsG0480018548.01.T01	AT5G43240	29.661	236	125	9	169	380	2	220	5.13e-13	70.5

Find 87 sgRNAs with CRISPR-Local

Find 145 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATCAACTGCCTCAAAATT+TGG	0.108204	4:-6460472	MsG0480018548.01.T01:CDS
CCAGAAACTTGAATCCATTT+TGG	0.133453	4:+6460412	None:intergenic
CCAAAATGGATTCAAGTTTC+TGG	0.178569	4:-6460412	MsG0480018548.01.T01:CDS
GCCTCTCACAAATACAATTT+TGG	0.184722	4:-6459566	MsG0480018548.01.T01:CDS
GAACACCCTACTTATTATTA+TGG	0.206601	4:-6459193	MsG0480018548.01.T01:CDS
CTTGCAGCTGTTGATGGAAT+TGG	0.234153	4:-6460346	MsG0480018548.01.T01:CDS
AGGTGGGTTGTCTTTAGTTT+TGG	0.263794	4:+6459534	None:intergenic
TTGATCATTGTTGCTGTTGA+TGG	0.292170	4:+6460764	None:intergenic
GCAAAGTAAATCTCAGAAAA+AGG	0.300596	4:-6459440	MsG0480018548.01.T01:CDS
GACTTACTTGCAGCTGTTGA+TGG	0.339065	4:-6460352	MsG0480018548.01.T01:CDS
CAGTGATTCACATGGATTCC+TGG	0.341087	4:+6460617	None:intergenic
CATCGTATGAGTATAGGTTT+TGG	0.362129	4:+6460679	None:intergenic
TTGCAGCTGTTGATGGAATT+GGG	0.365599	4:-6460345	MsG0480018548.01.T01:CDS
TGCTGTTGATGGTGGCTAAA+AGG	0.392005	4:+6460775	None:intergenic
AATAGTGCGGATGCCCAAAA+TGG	0.394854	4:-6460426	MsG0480018548.01.T01:CDS
AGCTTCCTTACCATGCCATT+AGG	0.401925	4:-6459373	MsG0480018548.01.T01:CDS
GGATTGAGTAACACAGAAAC+CGG	0.407217	4:+6459271	None:intergenic
ACCTATACTCATACGATGTT+CGG	0.411549	4:-6460674	MsG0480018548.01.T01:CDS
CAAAACATTCATTGCACTTG+TGG	0.427044	4:-6460504	MsG0480018548.01.T01:CDS
CCTGTACCATAATAATAAGT+AGG	0.434424	4:+6459187	None:intergenic
CAGAAGTAAAATCGATGTTA+AGG	0.436014	4:-6459467	MsG0480018548.01.T01:CDS
ATTTGTGAGAGGCTCATTAG+AGG	0.437734	4:+6459576	None:intergenic
CCTGGTATAGCACCACAGTT+TGG	0.441678	4:-6459250	MsG0480018548.01.T01:CDS
GAGAGGCTCATTAGAGGTTA+AGG	0.444319	4:+6459582	None:intergenic
GGAATGTTGAGTGGCTGGTT+TGG	0.446551	4:+6459223	None:intergenic
AACAAATGTTGCTGCATCCC+AGG	0.457734	4:-6460635	MsG0480018548.01.T01:CDS
GCCTCAAAATTTGGATTCTG+AGG	0.458830	4:-6460463	MsG0480018548.01.T01:CDS
ACACATCCAGCAAAAGAGTT+AGG	0.466364	4:+6459328	None:intergenic
GTTTCTGTGTTACTCAATCC+TGG	0.470852	4:-6459268	MsG0480018548.01.T01:CDS
GGATCCATTGTAAAGCTTGT+GGG	0.479392	4:-6459352	MsG0480018548.01.T01:CDS
TGGTGCCAAGTGGAAGAGAT+AGG	0.487529	4:+6460805	None:intergenic
CCTTGGGTTCAGTGCAATCA+AGG	0.487808	4:+6459135	None:intergenic
TCAGTGCAATCAAGGACCTT+GGG	0.489701	4:+6459143	None:intergenic
CCTACTTATTATTATGGTAC+AGG	0.491753	4:-6459187	MsG0480018548.01.T01:CDS
AGCTTTACAATGGATCCTAA+TGG	0.492466	4:+6459358	None:intergenic
CCTGAGGAATGTTGAGTGGC+TGG	0.493538	4:+6459218	None:intergenic
ACTGTTGATGCAGATTGCTT+AGG	0.493675	4:+6459514	None:intergenic
AGGTCAAAAGAAGGTGTTGT+GGG	0.497682	4:-6459103	MsG0480018548.01.T01:CDS
CCAAACTGTGGTGCTATACC+AGG	0.500141	4:+6459250	None:intergenic
AGCTTCCTATCTCTTCCACT+TGG	0.503728	4:-6460810	MsG0480018548.01.T01:CDS
CACACACAACATTGGCAAGC+AGG	0.511161	4:-6460292	MsG0480018548.01.T01:CDS
GAGAGTGTCAACAAAATCCT+TGG	0.515103	4:+6460836	None:intergenic
TTCAGTGCAATCAAGGACCT+TGG	0.515168	4:+6459142	None:intergenic
GCCAAAATTGTATTTGTGAG+AGG	0.515201	4:+6459565	None:intergenic
AGTTCTACAACTTGCTGCCA+TGG	0.519806	4:-6460949	MsG0480018548.01.T01:CDS
TTACTTCTGTTACTGGTGCA+AGG	0.520158	4:+6459481	None:intergenic
CAGGAACATCAAAGAGAAAG+AGG	0.520391	4:-6459168	MsG0480018548.01.T01:CDS
AGGATCCATTGTAAAGCTTG+TGG	0.523652	4:-6459353	MsG0480018548.01.T01:CDS
TCCGAACATCGTATGAGTAT+AGG	0.533030	4:+6460673	None:intergenic
ATGGTGATGATTCTGAGGGT+TGG	0.535301	4:+6460736	None:intergenic
GTGGGATTTGTGAAGAGAGA+AGG	0.537415	4:-6459085	MsG0480018548.01.T01:CDS
AGTGATTCACATGGATTCCT+GGG	0.538053	4:+6460618	None:intergenic
ATCATTGTTGCTGTTGATGG+TGG	0.539275	4:+6460767	None:intergenic
AAGGAATGGTGATGATTCTG+AGG	0.543097	4:+6460731	None:intergenic
GTTGATGCAGATTGCTTAGG+TGG	0.556543	4:+6459517	None:intergenic
CCTTGATTGCACTGAACCCA+AGG	0.558804	4:-6459135	MsG0480018548.01.T01:CDS
CTGTACCATAATAATAAGTA+GGG	0.562506	4:+6459188	None:intergenic
CAGTGTGGAGAACTTGAACC+CGG	0.564774	4:-6459290	MsG0480018548.01.T01:CDS
CCTCAAAATTTGGATTCTGA+GGG	0.569344	4:-6460462	MsG0480018548.01.T01:CDS
TGGATCCTAATGGCATGGTA+AGG	0.579373	4:+6459368	None:intergenic
TACAATGGATCCTAATGGCA+TGG	0.582946	4:+6459363	None:intergenic
CCAGCCACTCAACATTCCTC+AGG	0.585126	4:-6459218	MsG0480018548.01.T01:CDS
TTGATGCAGATTGCTTAGGT+GGG	0.586176	4:+6459518	None:intergenic
TTGTCGTTGTTGAGAAGCCA+TGG	0.603410	4:+6460932	None:intergenic
AGGTCCCACAAGCTTTACAA+TGG	0.609111	4:+6459348	None:intergenic
GAAGTCAACAAAATCACCGT+TGG	0.609986	4:+6459402	None:intergenic
TGCAGCTGTTGATGGAATTG+GGG	0.616569	4:-6460344	MsG0480018548.01.T01:CDS
CTTGAATGTTGATGATGACA+CGG	0.619606	4:-6460580	MsG0480018548.01.T01:CDS
GAGGAAGTCACACACAACAT+TGG	0.621785	4:-6460300	MsG0480018548.01.T01:CDS
CAAAGAGAAAGAGGGACCCA+AGG	0.624400	4:-6459159	MsG0480018548.01.T01:CDS
AAGTAAGTCACAGACGAACA+TGG	0.624914	4:+6460366	None:intergenic
GTGATATATGCAGAAGCCAA+CGG	0.632346	4:-6459418	MsG0480018548.01.T01:CDS
TTCAGACTTGACTCAACTAG+AGG	0.639443	4:-6460319	MsG0480018548.01.T01:CDS
CAGGTCAAAAGAAGGTGTTG+TGG	0.656062	4:-6459104	MsG0480018548.01.T01:CDS
TAAGTAGGGTGTTCAACCTG+AGG	0.660168	4:+6459202	None:intergenic
GGTGGCTAAAAGGCGGACAA+TGG	0.668124	4:+6460785	None:intergenic
AGGAACATCAAAGAGAAAGA+GGG	0.669133	4:-6459167	MsG0480018548.01.T01:CDS
TCAAGAGAATAGTAATAGTG+CGG	0.674033	4:-6460439	MsG0480018548.01.T01:CDS
ACACAACATTGGCAAGCAGG+AGG	0.678135	4:-6460289	MsG0480018548.01.T01:intron
AGGCGGACAATGGTGCCAAG+TGG	0.686421	4:+6460795	None:intergenic
TGGTAATTTGTACAACAGTG+TGG	0.689995	4:-6459305	MsG0480018548.01.T01:CDS
TCAACCTGAGGAATGTTGAG+TGG	0.701201	4:+6459214	None:intergenic
GATTGAGTAACACAGAAACC+GGG	0.708506	4:+6459272	None:intergenic
AGGAATGGTGATGATTCTGA+GGG	0.708623	4:+6460732	None:intergenic
TTCATGCACAGTGATTCACA+TGG	0.716552	4:+6460609	None:intergenic
TGGTTTGGACAACCAAACTG+TGG	0.745392	4:+6459238	None:intergenic
TGTTGATGGTGGCTAAAAGG+CGG	0.769976	4:+6460778	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	TCAAACAAACAAAAAAAAAA+AGG	+	Chr4:6460377-6460396	None:intergenic	15.0%
!!	TTTATTGAGAATCTTTATTA+TGG	-	Chr4:6459918-6459937	MsG0480018548.01.T01:intron	15.0%
!!!	AATATAATAAAAAAGAGTAC+AGG	-	Chr4:6460223-6460242	MsG0480018548.01.T01:intron	15.0%
!!!	ATTTAAGATCTATTGAATTT+TGG	+	Chr4:6460101-6460120	None:intergenic	15.0%
!!!	TTTAAGATCTATTGAATTTT+GGG	+	Chr4:6460100-6460119	None:intergenic	15.0%
!!!	TCACAAATATATGATTTTAG+AGG	+	Chr4:6459996-6460015	None:intergenic	20.0%
!!!	TTAAGATCTATTGAATTTTG+GGG	+	Chr4:6460099-6460118	None:intergenic	20.0%
!!!	TTTGTCTACTATGATTTTAA+GGG	+	Chr4:6459148-6459167	None:intergenic	20.0%
!	CATTAATATTCACAATCTCA+GGG	-	Chr4:6460176-6460195	MsG0480018548.01.T01:intron	25.0%
!	CTGTACCATAATAATAAGTA+GGG	+	Chr4:6460850-6460869	None:intergenic	25.0%
!	TCAATATCTGTACATCAAAA+AGG	+	Chr4:6460418-6460437	None:intergenic	25.0%
!	TGAATGTTCATGATTAAGAT+TGG	+	Chr4:6459872-6459891	None:intergenic	25.0%
!!	GTTTGTCTACTATGATTTTA+AGG	+	Chr4:6459149-6459168	None:intergenic	25.0%
!!	TTGTCTACTATGATTTTAAG+GGG	+	Chr4:6459147-6459166	None:intergenic	25.0%
!!!	CAACTCATGATTTTAATTTG+TGG	-	Chr4:6459890-6459909	MsG0480018548.01.T01:intron	25.0%
!!!	TTAGTATGTCTTCTTGTTTT+GGG	+	Chr4:6460257-6460276	None:intergenic	25.0%
!!!	TTTTTGATGTTTTCAAGGAA+TGG	+	Chr4:6459321-6459340	None:intergenic	25.0%
	AAATCAACTGCCTCAAAATT+TGG	-	Chr4:6459563-6459582	MsG0480018548.01.T01:CDS	30.0%
	AGGTAATTAAATGTGTTGTG+TGG	-	Chr4:6459766-6459785	MsG0480018548.01.T01:intron	30.0%
	CAGAAGTAAAATCGATGTTA+AGG	-	Chr4:6460568-6460587	MsG0480018548.01.T01:CDS	30.0%
	CCATTAATATTCACAATCTC+AGG	-	Chr4:6460175-6460194	MsG0480018548.01.T01:intron	30.0%
	CCTACTTATTATTATGGTAC+AGG	-	Chr4:6460848-6460867	MsG0480018548.01.T01:CDS	30.0%
	CCTGAGATTGTGAATATTAA+TGG	+	Chr4:6460178-6460197	None:intergenic	30.0%
	CCTGTACCATAATAATAAGT+AGG	+	Chr4:6460851-6460870	None:intergenic	30.0%
	GAACACCCTACTTATTATTA+TGG	-	Chr4:6460842-6460861	MsG0480018548.01.T01:CDS	30.0%
	GCAAAGTAAATCTCAGAAAA+AGG	-	Chr4:6460595-6460614	MsG0480018548.01.T01:CDS	30.0%
	TATATTTGTGACTGCAATTG+AGG	-	Chr4:6460005-6460024	MsG0480018548.01.T01:intron	30.0%
	TCAAGAGAATAGTAATAGTG+CGG	-	Chr4:6459596-6459615	MsG0480018548.01.T01:CDS	30.0%
!	AGAGGTTTTTGATGTTTTCA+AGG	+	Chr4:6459326-6459345	None:intergenic	30.0%
!	CACACAAAAAACTTGTTTGA+TGG	+	Chr4:6459483-6459502	None:intergenic	30.0%
!	CAGAAACTTGAATCCATTTT+GGG	+	Chr4:6459625-6459644	None:intergenic	30.0%
!!	ATAGTGTATCAGTTAGTCTT+AGG	-	Chr4:6460071-6460090	MsG0480018548.01.T01:intron	30.0%
!!	ATCGATTTTACTTCTGTTAC+TGG	+	Chr4:6460564-6460583	None:intergenic	30.0%
!!	CTTAGTATGTCTTCTTGTTT+TGG	+	Chr4:6460258-6460277	None:intergenic	30.0%
!!	TACTATGATTTTAAGGGGAA+TGG	+	Chr4:6459142-6459161	None:intergenic	30.0%
!!!	AAGCAACAAAGTTGTTTTTG+TGG	-	Chr4:6459170-6459189	MsG0480018548.01.T01:CDS	30.0%
	ACCTATACTCATACGATGTT+CGG	-	Chr4:6459361-6459380	MsG0480018548.01.T01:CDS	35.0%
	AGAACTACTACATTTCCTGA+CGG	+	Chr4:6460041-6460060	None:intergenic	35.0%
	AGCTTTACAATGGATCCTAA+TGG	+	Chr4:6460680-6460699	None:intergenic	35.0%
	AGGAACATCAAAGAGAAAGA+GGG	-	Chr4:6460868-6460887	MsG0480018548.01.T01:CDS	35.0%
	CAAAACATTCATTGCACTTG+TGG	-	Chr4:6459531-6459550	MsG0480018548.01.T01:CDS	35.0%
	CCTCAAAATTTGGATTCTGA+GGG	-	Chr4:6459573-6459592	MsG0480018548.01.T01:CDS	35.0%
	GCCAAAATTGTATTTGTGAG+AGG	+	Chr4:6460473-6460492	None:intergenic	35.0%
	TCAGGAAATGTAGTAGTTCT+AGG	-	Chr4:6460041-6460060	MsG0480018548.01.T01:intron	35.0%
	TTGAAGAGCCAAAAACAAAC+GGG	-	Chr4:6459060-6459079	MsG0480018548.01.T01:CDS	35.0%
	TTGTGCCAAGTTTAAAGGTT+CGG	-	Chr4:6460143-6460162	MsG0480018548.01.T01:intron	35.0%
!	CATCGTATGAGTATAGGTTT+TGG	+	Chr4:6459359-6459378	None:intergenic	35.0%
!	CCAAAATGGATTCAAGTTTC+TGG	-	Chr4:6459623-6459642	MsG0480018548.01.T01:intron	35.0%
!	CCAGAAACTTGAATCCATTT+TGG	+	Chr4:6459626-6459645	None:intergenic	35.0%
!	GCCTCTCACAAATACAATTT+TGG	-	Chr4:6460469-6460488	MsG0480018548.01.T01:CDS	35.0%
!	TGGTAATTTGTACAACAGTG+TGG	-	Chr4:6460730-6460749	MsG0480018548.01.T01:CDS	35.0%
!	TTGATCATTGTTGCTGTTGA+TGG	+	Chr4:6459274-6459293	None:intergenic	35.0%
!!	CTTGAATGTTGATGATGACA+CGG	-	Chr4:6459455-6459474	MsG0480018548.01.T01:CDS	35.0%
!!	GAACTTTTCCCGTTTGTTTT+TGG	+	Chr4:6459071-6459090	None:intergenic	35.0%
!!	GATTTTAGAGGTTTCCACAA+CGG	+	Chr4:6459984-6460003	None:intergenic	35.0%
!!	TGTTTTTGTGGAAACAACCA+AGG	-	Chr4:6459182-6459201	MsG0480018548.01.T01:CDS	35.0%
!!!	GTATGAGTATAGGTTTTGGA+CGG	+	Chr4:6459355-6459374	None:intergenic	35.0%
!!!	TTTTGAGGCAGTTGATTTGT+TGG	+	Chr4:6459561-6459580	None:intergenic	35.0%
	AAGTAAGTCACAGACGAACA+TGG	+	Chr4:6459672-6459691	None:intergenic	40.0%
	ACACATCCAGCAAAAGAGTT+AGG	+	Chr4:6460710-6460729	None:intergenic	40.0%
	ACTGTTGATGCAGATTGCTT+AGG	+	Chr4:6460524-6460543	None:intergenic	40.0%
	AGGATCCATTGTAAAGCTTG+TGG	-	Chr4:6460682-6460701	MsG0480018548.01.T01:CDS	40.0%
	AGTGATTCACATGGATTCCT+GGG	+	Chr4:6459420-6459439	None:intergenic	40.0%
	ATTTGTGAGAGGCTCATTAG+AGG	+	Chr4:6460462-6460481	None:intergenic	40.0%
	CAGGAACATCAAAGAGAAAG+AGG	-	Chr4:6460867-6460886	MsG0480018548.01.T01:CDS	40.0%
	CCAAGTTTAAAGGTTCGGAA+AGG	-	Chr4:6460148-6460167	MsG0480018548.01.T01:intron	40.0%
	CCTTTCCGAACCTTTAAACT+TGG	+	Chr4:6460151-6460170	None:intergenic	40.0%
	GAACTACTACATTTCCTGAC+GGG	+	Chr4:6460040-6460059	None:intergenic	40.0%
	GAAGTCAACAAAATCACCGT+TGG	+	Chr4:6460636-6460655	None:intergenic	40.0%
	GATTGAGTAACACAGAAACC+GGG	+	Chr4:6460766-6460785	None:intergenic	40.0%
	GCCTCAAAATTTGGATTCTG+AGG	-	Chr4:6459572-6459591	MsG0480018548.01.T01:CDS	40.0%
	GGATCCATTGTAAAGCTTGT+GGG	-	Chr4:6460683-6460702	MsG0480018548.01.T01:CDS	40.0%
	GGATTGAGTAACACAGAAAC+CGG	+	Chr4:6460767-6460786	None:intergenic	40.0%
	GGCATCATAATCGAAGTTGT+GGG	+	Chr4:6459963-6459982	None:intergenic	40.0%
	GTGATATATGCAGAAGCCAA+CGG	-	Chr4:6460617-6460636	MsG0480018548.01.T01:CDS	40.0%
	TACAATGGATCCTAATGGCA+TGG	+	Chr4:6460675-6460694	None:intergenic	40.0%
	TCCGAACATCGTATGAGTAT+AGG	+	Chr4:6459365-6459384	None:intergenic	40.0%
	TTACTTCTGTTACTGGTGCA+AGG	+	Chr4:6460557-6460576	None:intergenic	40.0%
	TTCAGACTTGACTCAACTAG+AGG	-	Chr4:6459716-6459735	MsG0480018548.01.T01:intron	40.0%
	TTCATGCACAGTGATTCACA+TGG	+	Chr4:6459429-6459448	None:intergenic	40.0%
	TTGATGCAGATTGCTTAGGT+GGG	+	Chr4:6460520-6460539	None:intergenic	40.0%
!	AACACCTTCTTTTGACCTGT+TGG	+	Chr4:6460930-6460949	None:intergenic	40.0%
!	AACTCTTTTGCTGGATGTGT+TGG	-	Chr4:6460710-6460729	MsG0480018548.01.T01:CDS	40.0%
!	AAGGAATGGTGATGATTCTG+AGG	+	Chr4:6459307-6459326	None:intergenic	40.0%
!	ACACCTTCTTTTGACCTGTT+GGG	+	Chr4:6460929-6460948	None:intergenic	40.0%
!	AGGAATGGTGATGATTCTGA+GGG	+	Chr4:6459306-6459325	None:intergenic	40.0%
!	ATCATTGTTGCTGTTGATGG+TGG	+	Chr4:6459271-6459290	None:intergenic	40.0%
!	CCCTCAGAATCCAAATTTTG+AGG	+	Chr4:6459576-6459595	None:intergenic	40.0%
!	GTAGCTTGTGCCAAGTTTAA+AGG	-	Chr4:6460138-6460157	MsG0480018548.01.T01:intron	40.0%
!	GTTTCTGTGTTACTCAATCC+TGG	-	Chr4:6460767-6460786	MsG0480018548.01.T01:CDS	40.0%
!	TTGCAGCTGTTGATGGAATT+GGG	-	Chr4:6459690-6459709	MsG0480018548.01.T01:intron	40.0%
!!	AGGTCAAAAGAAGGTGTTGT+GGG	-	Chr4:6460932-6460951	MsG0480018548.01.T01:CDS	40.0%
!!	GAGAGTGTCAACAAAATCCT+TGG	+	Chr4:6459202-6459221	None:intergenic	40.0%
!!!	AGGTGGGTTGTCTTTAGTTT+TGG	+	Chr4:6460504-6460523	None:intergenic	40.0%
!!!	AGTATAGGTTTTGGACGGTT+TGG	+	Chr4:6459350-6459369	None:intergenic	40.0%
	AACAAATGTTGCTGCATCCC+AGG	-	Chr4:6459400-6459419	MsG0480018548.01.T01:CDS	45.0%
	AATAGTGCGGATGCCCAAAA+TGG	-	Chr4:6459609-6459628	MsG0480018548.01.T01:intron	45.0%
	AGCTTCCTATCTCTTCCACT+TGG	-	Chr4:6459225-6459244	MsG0480018548.01.T01:CDS	45.0%
	AGCTTCCTTACCATGCCATT+AGG	-	Chr4:6460662-6460681	MsG0480018548.01.T01:CDS	45.0%
	AGGTCCCACAAGCTTTACAA+TGG	+	Chr4:6460690-6460709	None:intergenic	45.0%
	CAGTGATTCACATGGATTCC+TGG	+	Chr4:6459421-6459440	None:intergenic	45.0%
	CGGCATCATAATCGAAGTTG+TGG	+	Chr4:6459964-6459983	None:intergenic	45.0%
	CTTCGATTATGATGCCGTTG+TGG	-	Chr4:6459967-6459986	MsG0480018548.01.T01:intron	45.0%
	GACTTACTTGCAGCTGTTGA+TGG	-	Chr4:6459683-6459702	MsG0480018548.01.T01:intron	45.0%
	GAGAGGCTCATTAGAGGTTA+AGG	+	Chr4:6460456-6460475	None:intergenic	45.0%
	GAGGAAGTCACACACAACAT+TGG	-	Chr4:6459735-6459754	MsG0480018548.01.T01:intron	45.0%
	GTGGGATTTGTGAAGAGAGA+AGG	-	Chr4:6460950-6460969	MsG0480018548.01.T01:CDS	45.0%
	GTTGATGCAGATTGCTTAGG+TGG	+	Chr4:6460521-6460540	None:intergenic	45.0%
	TCAACCTGAGGAATGTTGAG+TGG	+	Chr4:6460824-6460843	None:intergenic	45.0%
	TCAGTGCAATCAAGGACCTT+GGG	+	Chr4:6460895-6460914	None:intergenic	45.0%
	TGGATCCTAATGGCATGGTA+AGG	+	Chr4:6460670-6460689	None:intergenic	45.0%
	TTCAGTGCAATCAAGGACCT+TGG	+	Chr4:6460896-6460915	None:intergenic	45.0%
	TTGTCGTTGTTGAGAAGCCA+TGG	+	Chr4:6459106-6459125	None:intergenic	45.0%
!	ACCTTCTTTTGACCTGTTGG+GGG	+	Chr4:6460927-6460946	None:intergenic	45.0%
!	ATGGTGATGATTCTGAGGGT+TGG	+	Chr4:6459302-6459321	None:intergenic	45.0%
!	CACCTTCTTTTGACCTGTTG+GGG	+	Chr4:6460928-6460947	None:intergenic	45.0%
!	CTTGCAGCTGTTGATGGAAT+TGG	-	Chr4:6459689-6459708	MsG0480018548.01.T01:intron	45.0%
!	TAAGTAGGGTGTTCAACCTG+AGG	+	Chr4:6460836-6460855	None:intergenic	45.0%
!	TGCAGCTGTTGATGGAATTG+GGG	-	Chr4:6459691-6459710	MsG0480018548.01.T01:intron	45.0%
!	TGGTTTGGACAACCAAACTG+TGG	+	Chr4:6460800-6460819	None:intergenic	45.0%
!!	AGTTCTACAACTTGCTGCCA+TGG	-	Chr4:6459086-6459105	MsG0480018548.01.T01:CDS	45.0%
!!	CAGGTCAAAAGAAGGTGTTG+TGG	-	Chr4:6460931-6460950	MsG0480018548.01.T01:CDS	45.0%
!!	TGCTGTTGATGGTGGCTAAA+AGG	+	Chr4:6459263-6459282	None:intergenic	45.0%
!!	TGTTGATGGTGGCTAAAAGG+CGG	+	Chr4:6459260-6459279	None:intergenic	45.0%
	ACACAACATTGGCAAGCAGG+AGG	-	Chr4:6459746-6459765	MsG0480018548.01.T01:intron	50.0%
	CAAAGAGAAAGAGGGACCCA+AGG	-	Chr4:6460876-6460895	MsG0480018548.01.T01:CDS	50.0%
	CACACACAACATTGGCAAGC+AGG	-	Chr4:6459743-6459762	MsG0480018548.01.T01:intron	50.0%
	CAGTGTGGAGAACTTGAACC+CGG	-	Chr4:6460745-6460764	MsG0480018548.01.T01:CDS	50.0%
	CCTGGTATAGCACCACAGTT+TGG	-	Chr4:6460785-6460804	MsG0480018548.01.T01:CDS	50.0%
	CCTTGATTGCACTGAACCCA+AGG	-	Chr4:6460900-6460919	MsG0480018548.01.T01:CDS	50.0%
	CCTTGGGTTCAGTGCAATCA+AGG	+	Chr4:6460903-6460922	None:intergenic	50.0%
	TCCCCCAACAGGTCAAAAGA+AGG	-	Chr4:6460923-6460942	MsG0480018548.01.T01:CDS	50.0%
!	GGAATGTTGAGTGGCTGGTT+TGG	+	Chr4:6460815-6460834	None:intergenic	50.0%
!	GTGGGACCTAACTCTTTTGC+TGG	-	Chr4:6460701-6460720	MsG0480018548.01.T01:CDS	50.0%
!	TGGTGCCAAGTGGAAGAGAT+AGG	+	Chr4:6459233-6459252	None:intergenic	50.0%
!!	CCAAACTGTGGTGCTATACC+AGG	+	Chr4:6460788-6460807	None:intergenic	50.0%
!!!	GGTTTTGGACGGTTTGGTAG+AGG	+	Chr4:6459344-6459363	None:intergenic	50.0%
	CCAGCCACTCAACATTCCTC+AGG	-	Chr4:6460817-6460836	MsG0480018548.01.T01:CDS	55.0%
	CCTGAGGAATGTTGAGTGGC+TGG	+	Chr4:6460820-6460839	None:intergenic	55.0%
	GGTGGCTAAAAGGCGGACAA+TGG	+	Chr4:6459253-6459272	None:intergenic	55.0%
	TGAGGCATGTTTCACCCGTC+AGG	-	Chr4:6460023-6460042	MsG0480018548.01.T01:intron	55.0%
	TTGACCTGTTGGGGGACCTT+GGG	+	Chr4:6460919-6460938	None:intergenic	55.0%
	TTTGACCTGTTGGGGGACCT+TGG	+	Chr4:6460920-6460939	None:intergenic	55.0%
	TGAACCCAAGGTCCCCCAAC+AGG	-	Chr4:6460912-6460931	MsG0480018548.01.T01:CDS	60.0%
!	AGGCGGACAATGGTGCCAAG+TGG	+	Chr4:6459243-6459262	None:intergenic	60.0%

Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	6459060	6460997	6459060	ID=MsG0480018548.01;Name=MsG0480018548.01
Chr4	mRNA	6459060	6460997	6459060	ID=MsG0480018548.01.T01;Parent=MsG0480018548.01;Name=MsG0480018548.01.T01;_AED=0.29;_eAED=0.29;_QI=0\|0\|0\|1\|1\|1\|2\|0\|424
Chr4	exon	6460290	6460997	6460290	ID=MsG0480018548.01.T01:exon:26679;Parent=MsG0480018548.01.T01
Chr4	exon	6459060	6459626	6459060	ID=MsG0480018548.01.T01:exon:26678;Parent=MsG0480018548.01.T01
Chr4	CDS	6460290	6460997	6460290	ID=MsG0480018548.01.T01:cds;Parent=MsG0480018548.01.T01
Chr4	CDS	6459060	6459626	6459060	ID=MsG0480018548.01.T01:cds;Parent=MsG0480018548.01.T01

Gene Sequence

>MsG0480018548.01.T01

TTGAAGAGCCAAAAACAAACGGGAAAAGTTCTACAACTTGCTGCCATGGCTTCTCAACAACGACAACAAGAGTCAAAAACCATTCCCCTTAAAATCATAGTAGACAAACAAAGCAACAAAGTTGTTTTTGTGGAAACAACCAAGGATTTTGTTGACACTCTCTTTAGCTTCCTATCTCTTCCACTTGGCACCATTGTCCGCCTTTTAGCCACCATCAACAGCAACAATGATCAACAAAACCAACCCTCAGAATCATCACCATTCCTTGAAAACATCAAAAACCTCTACCAAACCGTCCAAAACCTATACTCATACGATGTTCGGAACACAAATTTTTGCAAACAAATGTTGCTGCATCCCAGGAATCCATGTGAATCACTGTGCATGAAGCTGTTCTTGAATGTTGATGATGACACGGAACCATCAAACAAGTTTTTTGTGTGTGATTCTTGCAACAAGTTCACTACTTTTCAAAACATTCATTGCACTTGTGGAAAACCAACAAATCAACTGCCTCAAAATTTGGATTCTGAGGGTCAAGAGAATAGTAATAGTGCGGATGCCCAAAATGGATTCAAGTTTCTGGTGTCTGATGATTTGAAGATTGTGCCATGTTCGTCTGTGACTTACTTGCAGCTGTTGATGGAATTGGGGTATTCAGACTTGACTCAACTAGAGGAAGTCACACACAACATTGGCAAGCAGGAGATATTGAAACTACTCAAGTATACCTTAACCTCTAATGAGCCTCTCACAAATACAATTTTGGCAAGTAGCTCCAAAACTAAAGACAACCCACCTAAGCAATCTGCATCAACAGTTAGAGTAATGCCTTGCACCAGTAACAGAAGTAAAATCGATGTTAAGGTAGTGCAAAGTAAATCTCAGAAAAAGGTGATATATGCAGAAGCCAACGGTGATTTTGTTGACTTCATTTTTAGCTTCCTTACCATGCCATTAGGATCCATTGTAAAGCTTGTGGGACCTAACTCTTTTGCTGGATGTGTTGGTAATTTGTACAACAGTGTGGAGAACTTGAACCCGGTTTCTGTGTTACTCAATCCTGGTATAGCACCACAGTTTGGTTGTCCAAACCAGCCACTCAACATTCCTCAGGTTGAACACCCTACTTATTATTATGGTACAGGAACATCAAAGAGAAAGAGGGACCCAAGGTCCTTGATTGCACTGAACCCAAGGTCCCCCAACAGGTCAAAAGAAGGTGTTGTGGGATTTGTGAAGAGAGAAGGATTATATTGTGTAGAGATGATCTGA

Protein sequence

>MsG0480018548.01.T01

LKSQKQTGKVLQLAAMASQQRQQESKTIPLKIIVDKQSNKVVFVETTKDFVDTLFSFLSLPLGTIVRLLATINSNNDQQNQPSESSPFLENIKNLYQTVQNLYSYDVRNTNFCKQMLLHPRNPCESLCMKLFLNVDDDTEPSNKFFVCDSCNKFTTFQNIHCTCGKPTNQLPQNLDSEGQENSNSADAQNGFKFLVSDDLKIVPCSSVTYLQLLMELGYSDLTQLEEVTHNIGKQEILKLLKYTLTSNEPLTNTILASSSKTKDNPPKQSASTVRVMPCTSNRSKIDVKVVQSKSQKKVIYAEANGDFVDFIFSFLTMPLGSIVKLVGPNSFAGCVGNLYNSVENLNPVSVLLNPGIAPQFGCPNQPLNIPQVEHPTYYYGTGTSKRKRDPRSLIALNPRSPNRSKEGVVGFVKREGLYCVEMI*