AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480018720.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480018720.01.T01 MTR_4g017470 61.783 314 91 6 12 298 136 447 8.33e-122 358
MsG0480018720.01.T01 MTR_4g017470 37.255 102 48 2 106 192 8 108 3.83e-11 63.9
MsG0480018720.01.T01 MTR_4g017550 64.052 306 91 6 12 299 147 451 2.49e-120 354
MsG0480018720.01.T01 MTR_4g017440 59.105 313 111 3 4 299 168 480 1.39e-114 340
MsG0480018720.01.T01 MTR_4g017830 58.842 311 104 6 12 299 170 479 1.42e-112 336
MsG0480018720.01.T01 MTR_4g017410 59.672 305 89 5 12 299 175 462 3.16e-111 332
MsG0480018720.01.T01 MTR_4g019340 59.736 303 90 6 12 299 206 491 1.28e-110 330
MsG0480018720.01.T01 MTR_4g017610 60.137 291 111 4 14 303 175 461 3.95e-108 323
MsG0480018720.01.T01 MTR_4g019310 38.796 299 164 5 14 299 175 467 4.12e-56 189
MsG0480018720.01.T01 MTR_4g019310 28.571 182 103 5 110 265 8 188 1.46e-12 68.2
MsG0480018720.01.T01 MTR_7g066350 32.573 307 157 6 9 298 153 426 1.30e-38 142
MsG0480018720.01.T01 MTR_7g066350 29.268 205 119 6 106 292 5 201 4.68e-14 72.8
MsG0480018720.01.T01 MTR_7g066570 32.899 307 164 11 12 295 167 454 1.37e-32 127
MsG0480018720.01.T01 MTR_7g058710 28.981 314 180 8 12 298 157 454 3.29e-30 119
MsG0480018720.01.T01 MTR_7g058710 28.814 177 96 5 108 267 10 173 1.34e-11 65.5
MsG0480018720.01.T01 MTR_1g041315 30.844 308 167 9 12 298 162 444 3.76e-30 119
MsG0480018720.01.T01 MTR_7g066340 32.082 293 153 9 19 298 171 430 1.52e-29 117
MsG0480018720.01.T01 MTR_7g066340 29.756 205 112 8 105 288 7 200 6.61e-15 75.1
MsG0480018720.01.T01 MTR_7g066400 30.547 311 170 9 5 295 127 411 5.62e-29 115
MsG0480018720.01.T01 MTR_7g063900 29.703 303 185 9 14 295 161 456 4.61e-28 113
MsG0480018720.01.T01 MTR_7g063900 32.161 199 103 8 109 287 9 195 1.34e-15 77.4
MsG0480018720.01.T01 MTR_7g066680 37.736 212 100 7 109 299 85 285 1.85e-27 109
MsG0480018720.01.T01 MTR_7g066260 30.820 305 152 10 12 295 170 436 8.10e-27 110
MsG0480018720.01.T01 MTR_7g066260 29.245 212 121 6 110 299 15 219 2.47e-14 73.6
MsG0480018720.01.T01 MTR_7g062280 30.000 290 180 8 19 295 180 459 2.85e-26 108
MsG0480018720.01.T01 MTR_7g066580 31.707 287 168 7 42 304 150 432 4.19e-26 107
MsG0480018720.01.T01 MTR_7g066360 33.793 290 154 8 12 295 166 423 2.10e-25 105
MsG0480018720.01.T01 MTR_7g066360 27.854 219 128 7 102 299 6 215 5.59e-12 66.6
MsG0480018720.01.T01 MTR_7g012680 31.338 284 152 8 19 295 172 419 2.68e-25 105
MsG0480018720.01.T01 MTR_7g012680 26.728 217 117 6 102 281 6 217 8.13e-12 65.9
MsG0480018720.01.T01 MTR_7g066430 27.469 324 200 8 4 298 145 462 1.20e-24 103
MsG0480018720.01.T01 MTR_7g063890 28.763 299 182 9 19 295 183 472 4.30e-24 102
MsG0480018720.01.T01 MTR_7g063890 30.890 191 107 6 105 278 22 204 1.16e-12 68.6
MsG0480018720.01.T01 MTR_7g062300 28.620 297 181 10 19 299 170 451 5.86e-24 101
MsG0480018720.01.T01 MTR_7g062300 30.000 180 91 7 111 267 13 180 1.52e-11 65.1
MsG0480018720.01.T01 MTR_7g063660 28.231 294 183 7 19 295 163 445 1.02e-23 100
MsG0480018720.01.T01 MTR_7g063660 31.638 177 100 6 110 272 9 178 1.86e-15 77.0
MsG0480018720.01.T01 MTR_7g063840 25.850 294 193 7 15 295 160 441 2.17e-22 97.1
MsG0480018720.01.T01 MTR_7g063670 31.597 288 164 12 17 295 162 425 3.53e-22 96.7
MsG0480018720.01.T01 MTR_3g007740 28.425 292 183 9 14 298 147 419 1.38e-21 94.7
MsG0480018720.01.T01 MTR_3g007740 31.792 173 100 5 109 274 8 169 1.23e-13 71.2
MsG0480018720.01.T01 MTR_7g066410 28.228 333 186 9 19 304 173 499 1.98e-21 94.7
MsG0480018720.01.T01 MTR_7g066290 29.391 279 148 6 19 295 176 407 4.61e-21 93.2
MsG0480018720.01.T01 MTR_7g066290 27.885 208 129 5 110 299 15 219 3.95e-12 66.6
MsG0480018720.01.T01 MTR_7g058700 26.246 301 144 6 12 298 662 898 7.67e-21 93.2
MsG0480018720.01.T01 MTR_7g066310 35.678 199 87 6 110 298 193 360 1.60e-20 91.3
MsG0480018720.01.T01 MTR_7g063920 27.178 287 186 7 19 295 131 404 2.78e-20 90.9
MsG0480018720.01.T01 MTR_3g065200 26.885 305 163 8 19 306 149 410 3.18e-20 90.9
MsG0480018720.01.T01 MTR_7g066480 28.082 292 137 7 19 298 168 398 4.62e-20 90.1
MsG0480018720.01.T01 MTR_7g066280 27.832 309 173 6 19 298 80 367 7.96e-20 89.4
MsG0480018720.01.T01 MTR_7g063880 26.962 293 184 8 15 295 162 436 3.30e-19 87.8
MsG0480018720.01.T01 MTR_7g063880 28.889 180 96 6 110 269 11 178 1.37e-12 68.2
MsG0480018720.01.T01 MTR_7g063820 28.571 301 174 10 19 295 169 452 7.07e-18 84.0
MsG0480018720.01.T01 MTR_7g063830 31.273 275 162 11 15 278 163 421 9.38e-18 83.6
MsG0480018720.01.T01 MTR_7g063830 27.485 171 102 6 113 267 13 177 5.22e-12 66.6
MsG0480018720.01.T01 MTR_7g063720 29.231 195 112 5 110 295 23 200 4.36e-17 79.3
MsG0480018720.01.T01 MTR_7g066490 26.241 282 144 4 19 299 167 385 1.05e-16 80.5
MsG0480018720.01.T01 MTR_7g066490 29.189 185 109 6 96 267 2 177 1.20e-11 65.5
MsG0480018720.01.T01 MTR_8g445860 27.317 205 125 5 110 295 13 212 2.24e-15 74.7
MsG0480018720.01.T01 MTR_4g019330 29.885 174 72 3 124 296 32 156 7.34e-15 72.0
MsG0480018720.01.T01 MTR_7g100420 27.419 310 177 13 9 295 87 371 2.26e-13 70.5
MsG0480018720.01.T01 MTR_1g115450 37.975 79 41 1 110 180 7 85 8.34e-12 62.4
MsG0480018720.01.T01 MTR_0150s0010 25.714 210 125 6 110 295 10 212 2.98e-11 62.8
MsG0480018720.01.T01 MTR_0150s0030 32.000 100 53 2 110 200 8 101 3.19e-11 62.0
MsG0480018720.01.T01 MTR_2g029400 34.951 103 54 2 106 195 10 112 4.01e-11 63.5
MsG0480018720.01.T01 MTR_1g115455 36.709 79 42 1 110 180 9 87 5.19e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480018720.01.T01 AT5G01120 33.333 309 177 9 12 299 167 467 2.37e-37 139
MsG0480018720.01.T01 AT5G01140 32.526 289 170 8 19 295 150 425 1.25e-30 120
MsG0480018720.01.T01 AT5G01130 32.982 285 161 9 19 298 162 421 1.88e-30 119
MsG0480018720.01.T01 AT3G09140 29.097 299 182 9 19 299 185 471 9.23e-28 112
MsG0480018720.01.T01 AT5G43240 29.524 315 182 9 12 299 26 327 9.67e-26 105
MsG0480018720.01.T01 AT5G43240 29.524 315 182 9 12 299 170 471 5.91e-25 104
MsG0480018720.01.T01 AT5G43240 29.524 315 182 9 12 299 170 471 5.91e-25 104
MsG0480018720.01.T01 AT5G43240 29.524 315 182 9 12 299 170 471 5.91e-25 104
MsG0480018720.01.T01 AT3G09140 26.380 326 182 10 19 298 185 498 4.13e-23 99.8
MsG0480018720.01.T01 AT5G01150 27.508 309 175 8 19 299 170 457 7.47e-22 95.9
MsG0480018720.01.T01 AT3G09110 35.669 157 92 3 19 171 167 318 8.18e-21 91.7
MsG0480018720.01.T01 AT3G09120 29.412 153 92 2 19 164 170 313 1.55e-15 76.3
MsG0480018720.01.T01 AT5G37320 26.736 288 193 8 19 299 181 457 2.90e-14 73.6

Find 66 sgRNAs with CRISPR-Local

Find 112 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCTATTACAAATACAATTT+TGG 0.077846 4:+8953014 MsG0480018720.01.T01:CDS
CCCAAAATTGTATTTGTAAT+AGG 0.221679 4:-8953015 None:intergenic
GTGGGTTGTGGTATTAAATA+AGG 0.297283 4:-8953378 None:intergenic
CTCTAACTACTGATGCAAAT+TGG 0.299041 4:-8953071 None:intergenic
AGCTTCCTTACCATGCCATT+GGG 0.310690 4:+8953207 MsG0480018720.01.T01:CDS
ACTTCTGTGTTACTTAATCC+TGG 0.330201 4:+8953312 MsG0480018720.01.T01:CDS
CTTAGAGATGTTGGTTCCAT+TGG 0.338874 4:+8952363 MsG0480018720.01.T01:CDS
CCACAACCCACGTATTATTA+TGG 0.345905 4:+8953390 MsG0480018720.01.T01:CDS
GTGAAGAGAGCAACATTATA+TGG 0.349402 4:+8953543 MsG0480018720.01.T01:CDS
TTAAGCATGAGTTATGTATC+AGG 0.351541 4:+8952253 None:intergenic
AGGCAAAACTTAGCAGAAAC+TGG 0.372974 4:-8953591 None:intergenic
GGAATGTTGAGGGGCTGGTT+TGG 0.392660 4:-8953357 None:intergenic
TAGCTTCCTTACCATGCCAT+TGG 0.394737 4:+8953206 MsG0480018720.01.T01:CDS
AATCCCACAGCGCCTTCTCT+TGG 0.395694 4:-8953519 None:intergenic
CAATGGAACCAACATCTCTA+AGG 0.402119 4:-8952362 None:intergenic
GTACAAGAGTGTTCAGAACT+TGG 0.408992 4:+8953284 MsG0480018720.01.T01:CDS
ACTGATGCAAATTGGTTAGC+TGG 0.412013 4:-8953063 None:intergenic
TTAGAGATGTTGGTTCCATT+GGG 0.416438 4:+8952364 MsG0480018720.01.T01:CDS
AATAAGGAATGTTGAGGGGC+TGG 0.425217 4:-8953362 None:intergenic
GACTATTATCCTTCAAAAGA+AGG 0.429795 4:+8953438 MsG0480018720.01.T01:CDS
CATTGGTGAATTTGAGGTAA+AGG 0.432182 4:+8953671 MsG0480018720.01.T01:CDS
ATCCCACAGCGCCTTCTCTT+GGG 0.434305 4:-8953518 None:intergenic
GTTGAGTTCCTTAGAGATGT+TGG 0.445404 4:+8952354 MsG0480018720.01.T01:CDS
GGATTAAGTAACACAGAAGT+AGG 0.451070 4:-8953309 None:intergenic
GATAAGCATTGGTGAATTTG+AGG 0.462994 4:+8953665 MsG0480018720.01.T01:CDS
AAACACGAGGTTAGAGAAAG+TGG 0.478120 4:+8952283 MsG0480018720.01.T01:CDS
CTGGGATAGCACCACAACTT+AGG 0.485297 4:+8953331 MsG0480018720.01.T01:CDS
TTCAAGGTCGTTGATTGCAC+TGG 0.491294 4:+8953494 MsG0480018720.01.T01:CDS
AAGGAACTCAACATGGAACT+TGG 0.499089 4:-8952343 None:intergenic
CCATAATAATACGTGGGTTG+TGG 0.507333 4:-8953390 None:intergenic
CTAAGTTGTGGTGCTATCCC+AGG 0.519471 4:-8953330 None:intergenic
CATCTCTAAGGAACTCAACA+TGG 0.531180 4:-8952350 None:intergenic
CTTCTGTGTTACTTAATCCT+GGG 0.533644 4:+8953313 MsG0480018720.01.T01:CDS
ACACATCCAGCAAAAGAGTC+AGG 0.540251 4:-8953252 None:intergenic
TGGTAAAATCTTCAAATCAT+CGG 0.545386 4:-8952323 None:intergenic
CTGTAGACCATAATAATACG+TGG 0.545966 4:-8953397 None:intergenic
CTGATGCAAATTGGTTAGCT+GGG 0.547375 4:-8953062 None:intergenic
TCTGTTCTTTCAGATATGAA+AGG 0.549535 4:-8953611 None:intergenic
TATTAAATAAGGAATGTTGA+GGG 0.558962 4:-8953367 None:intergenic
TCTTGACGATCTTGAAGTGA+AGG 0.559099 4:+8953641 MsG0480018720.01.T01:CDS
TGGACCCCAATGGCATGGTA+AGG 0.574831 4:-8953212 None:intergenic
TACAATGGACCCCAATGGCA+TGG 0.580817 4:-8953217 None:intergenic
GCTTCCTTACCATGCCATTG+GGG 0.583133 4:+8953208 MsG0480018720.01.T01:CDS
GACCCAAGAGAAGGCGCTGT+GGG 0.589843 4:+8953516 MsG0480018720.01.T01:CDS
GTATTAAATAAGGAATGTTG+AGG 0.602215 4:-8953368 None:intergenic
TGGTTTGGACACCTAAGTTG+TGG 0.615467 4:-8953342 None:intergenic
GATTAAGTAACACAGAAGTA+GGG 0.615768 4:-8953308 None:intergenic
TTTCTGATATCATCGGGACA+AGG 0.617619 4:-8953099 None:intergenic
GAAGAAGTCACACACAACAT+TGG 0.621785 4:+8952409 MsG0480018720.01.T01:CDS
GAGAGGTGAAGATATACTTG+AGG 0.623514 4:-8952987 None:intergenic
ATTGCACTGGACCCAAGAGA+AGG 0.623682 4:+8953507 MsG0480018720.01.T01:CDS
TAAGCATGAGTTATGTATCA+GGG 0.627712 4:+8952254 None:intergenic
GTCAAGTCTGCATAACCCAA+TGG 0.629435 4:-8952379 None:intergenic
ATTAAATAAGGAATGTTGAG+GGG 0.631161 4:-8953366 None:intergenic
AGAGCAACATTATATGGTGT+AGG 0.631695 4:+8953549 MsG0480018720.01.T01:CDS
AGGTGAAGATATACTTGAGG+AGG 0.634185 4:-8952984 None:intergenic
ATAATCTATGCAGAAGCGAA+CGG 0.635454 4:+8953162 MsG0480018720.01.T01:CDS
ACACAACATTGGCAAGCAAG+AGG 0.636713 4:+8952420 MsG0480018720.01.T01:CDS
AGGTCCTAAAAGCTTTACAA+TGG 0.639517 4:-8953232 None:intergenic
TTCACTTCAAGATCGTCAAG+AGG 0.643323 4:-8953639 None:intergenic
GAAGTGAAGGTGATAAGCAT+TGG 0.654807 4:+8953654 MsG0480018720.01.T01:CDS
AGCTTTACAATGGACCCCAA+TGG 0.659874 4:-8953222 None:intergenic
GGACCCAAGAGAAGGCGCTG+TGG 0.662998 4:+8953515 MsG0480018720.01.T01:CDS
ATTTGTAATAGGCTCATGAG+AGG 0.663848 4:-8953004 None:intergenic
TGTAGACCATAATAATACGT+GGG 0.679137 4:-8953396 None:intergenic
ATCAGGGTCAGATAAACACG+AGG 0.769153 4:+8952270 MsG0480018720.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAGAGAATATATTAAAAA+AGG + Chr4:8952727-8952746 MsG0480018720.01.T01:intron 10.0%
!!! TTTTTAATAGTATTTTACCT+AGG + Chr4:8952868-8952887 MsG0480018720.01.T01:intron 15.0%
!! ATTGTAAGAATAACAGTTTA+AGG - Chr4:8952933-8952952 None:intergenic 20.0%
!! CTATACAAAATGTTAAAACA+TGG - Chr4:8952956-8952975 None:intergenic 20.0%
!! TATTAAATAAGGAATGTTGA+GGG - Chr4:8953370-8953389 None:intergenic 20.0%
!!! ATGAACTAATTTTAAGTTCA+AGG + Chr4:8953478-8953497 MsG0480018720.01.T01:CDS 20.0%
!!! CCTATTACAAATACAATTTT+GGG + Chr4:8953015-8953034 MsG0480018720.01.T01:CDS 20.0%
!!! TATCTCTAAAAACATTATTG+CGG + Chr4:8952583-8952602 MsG0480018720.01.T01:intron 20.0%
! AATAAGAGAAGAAACATGTT+AGG + Chr4:8952773-8952792 MsG0480018720.01.T01:intron 25.0%
! ATCTTTATTGTGGATAAATG+CGG + Chr4:8952536-8952555 MsG0480018720.01.T01:intron 25.0%
! ATTAAATAAGGAATGTTGAG+GGG - Chr4:8953369-8953388 None:intergenic 25.0%
! CCCAAAATTGTATTTGTAAT+AGG - Chr4:8953018-8953037 None:intergenic 25.0%
! GTAAGAAAAAGTCAATGTAA+TGG - Chr4:8952451-8952470 None:intergenic 25.0%
! GTATTAAATAAGGAATGTTG+AGG - Chr4:8953371-8953390 None:intergenic 25.0%
! TATGTTGTGAATCTTTATTG+TGG + Chr4:8952526-8952545 MsG0480018720.01.T01:intron 25.0%
! TGGTAAAATCTTCAAATCAT+CGG - Chr4:8952326-8952345 None:intergenic 25.0%
!! ATGCTAGCCAAAAAAAATTT+TGG - Chr4:8952897-8952916 None:intergenic 25.0%
!! GCCTATTACAAATACAATTT+TGG + Chr4:8953014-8953033 MsG0480018720.01.T01:CDS 25.0%
!! TGCTAGCCAAAAAAAATTTT+GGG - Chr4:8952896-8952915 None:intergenic 25.0%
!!! AAAAAAAATTTTGGGAACCT+AGG - Chr4:8952888-8952907 None:intergenic 25.0%
!!! ATCCATTTTTCTGATATCAT+CGG - Chr4:8953109-8953128 None:intergenic 25.0%
!!! GTTTTTAGAGATATTCACAT+CGG - Chr4:8952576-8952595 None:intergenic 25.0%
!!! TAGGTTCCCAAAATTTTTTT+TGG + Chr4:8952887-8952906 MsG0480018720.01.T01:intron 25.0%
!!! TGACTTTTTCTTACTTACAT+AGG + Chr4:8952457-8952476 MsG0480018720.01.T01:intron 25.0%
AAGAAACATGTTAGGATAAG+AGG + Chr4:8952781-8952800 MsG0480018720.01.T01:intron 30.0%
ATAAGTCTGCTAGTAATATC+AGG + Chr4:8952662-8952681 MsG0480018720.01.T01:intron 30.0%
GACTATTATCCTTCAAAAGA+AGG + Chr4:8953438-8953457 MsG0480018720.01.T01:CDS 30.0%
GATTAAGTAACACAGAAGTA+GGG - Chr4:8953311-8953330 None:intergenic 30.0%
TCATAAGTTAGCATAATTGC+AGG - Chr4:8952690-8952709 None:intergenic 30.0%
TCTGTTCTTTCAGATATGAA+AGG - Chr4:8953614-8953633 None:intergenic 30.0%
TCTTACTTACATAGGATCTT+AGG + Chr4:8952465-8952484 MsG0480018720.01.T01:intron 30.0%
TGTAGACCATAATAATACGT+GGG - Chr4:8953399-8953418 None:intergenic 30.0%
! AGAAAGTGGACAAAAGTTTT+TGG + Chr4:8952297-8952316 MsG0480018720.01.T01:CDS 30.0%
! GAAATCAATCCTTCTTTTGA+AGG - Chr4:8953450-8953469 None:intergenic 30.0%
! TAGGATAAGAGGTATAGTTA+GGG + Chr4:8952792-8952811 MsG0480018720.01.T01:intron 30.0%
! TTAGGATAAGAGGTATAGTT+AGG + Chr4:8952791-8952810 MsG0480018720.01.T01:intron 30.0%
!! TCCATTTTTCTGATATCATC+GGG - Chr4:8953108-8953127 None:intergenic 30.0%
!!! TTTTTTTTGGCTAGCATTAG+TGG + Chr4:8952900-8952919 MsG0480018720.01.T01:intron 30.0%
AGAGCAACATTATATGGTGT+AGG + Chr4:8953549-8953568 MsG0480018720.01.T01:CDS 35.0%
AGGTCCTAAAAGCTTTACAA+TGG - Chr4:8953235-8953254 None:intergenic 35.0%
AGTTAGGGAAGTTAAGTAGT+TGG + Chr4:8952807-8952826 MsG0480018720.01.T01:intron 35.0%
ATAACTGAAACCTCAAGTGA+GGG - Chr4:8952509-8952528 None:intergenic 35.0%
ATAATCTATGCAGAAGCGAA+CGG + Chr4:8953162-8953181 MsG0480018720.01.T01:CDS 35.0%
ATTTGTAATAGGCTCATGAG+AGG - Chr4:8953007-8953026 None:intergenic 35.0%
CTCTAACTACTGATGCAAAT+TGG - Chr4:8953074-8953093 None:intergenic 35.0%
CTGTAGACCATAATAATACG+TGG - Chr4:8953400-8953419 None:intergenic 35.0%
GGATTAAGTAACACAGAAGT+AGG - Chr4:8953312-8953331 None:intergenic 35.0%
GTGAAGAGAGCAACATTATA+TGG + Chr4:8953543-8953562 MsG0480018720.01.T01:CDS 35.0%
TAGCAGACTTATATCCCAAA+GGG - Chr4:8952654-8952673 None:intergenic 35.0%
TCCCGATGATATCAGAAAAA+TGG + Chr4:8953104-8953123 MsG0480018720.01.T01:CDS 35.0%
! CATTGGTGAATTTGAGGTAA+AGG + Chr4:8953671-8953690 MsG0480018720.01.T01:CDS 35.0%
! GTGGGTTGTGGTATTAAATA+AGG - Chr4:8953381-8953400 None:intergenic 35.0%
!! ACTTCTGTGTTACTTAATCC+TGG + Chr4:8953312-8953331 MsG0480018720.01.T01:CDS 35.0%
!! CTTCTGTGTTACTTAATCCT+GGG + Chr4:8953313-8953332 MsG0480018720.01.T01:CDS 35.0%
!! GATAAGCATTGGTGAATTTG+AGG + Chr4:8953665-8953684 MsG0480018720.01.T01:CDS 35.0%
!! TTAGAGATGTTGGTTCCATT+GGG + Chr4:8952364-8952383 MsG0480018720.01.T01:CDS 35.0%
AAACACGAGGTTAGAGAAAG+TGG + Chr4:8952283-8952302 MsG0480018720.01.T01:CDS 40.0%
AAGGAACTCAACATGGAACT+TGG - Chr4:8952346-8952365 None:intergenic 40.0%
ACTGATGCAAATTGGTTAGC+TGG - Chr4:8953066-8953085 None:intergenic 40.0%
AGAACTATGCTTCACCCTTT+GGG + Chr4:8952637-8952656 MsG0480018720.01.T01:intron 40.0%
AGGCAAAACTTAGCAGAAAC+TGG - Chr4:8953594-8953613 None:intergenic 40.0%
AGGTGAAGATATACTTGAGG+AGG - Chr4:8952987-8953006 None:intergenic 40.0%
CAATGGAACCAACATCTCTA+AGG - Chr4:8952365-8952384 None:intergenic 40.0%
CATAACTGAAACCTCAAGTG+AGG - Chr4:8952510-8952529 None:intergenic 40.0%
CCACAACCCACGTATTATTA+TGG + Chr4:8953390-8953409 MsG0480018720.01.T01:CDS 40.0%
CTAGCAGACTTATATCCCAA+AGG - Chr4:8952655-8952674 None:intergenic 40.0%
GAAGAAGTCACACACAACAT+TGG + Chr4:8952409-8952428 MsG0480018720.01.T01:CDS 40.0%
GAAGTGAAGGTGATAAGCAT+TGG + Chr4:8953654-8953673 MsG0480018720.01.T01:CDS 40.0%
GAGAGGTGAAGATATACTTG+AGG - Chr4:8952990-8953009 None:intergenic 40.0%
GAGGGTTCATGGTTTAACAA+TGG - Chr4:8952491-8952510 None:intergenic 40.0%
GTTGAGTTCCTTAGAGATGT+TGG + Chr4:8952354-8952373 MsG0480018720.01.T01:CDS 40.0%
TAGAACTATGCTTCACCCTT+TGG + Chr4:8952636-8952655 MsG0480018720.01.T01:intron 40.0%
TAGGGAAGTTAAGTAGTTGG+AGG + Chr4:8952810-8952829 MsG0480018720.01.T01:intron 40.0%
TCTTGACGATCTTGAAGTGA+AGG + Chr4:8953641-8953660 MsG0480018720.01.T01:CDS 40.0%
TTCACTTCAAGATCGTCAAG+AGG - Chr4:8953642-8953661 None:intergenic 40.0%
TTTCTGATATCATCGGGACA+AGG - Chr4:8953102-8953121 None:intergenic 40.0%
! CATCTCTAAGGAACTCAACA+TGG - Chr4:8952353-8952372 None:intergenic 40.0%
! CCATAATAATACGTGGGTTG+TGG - Chr4:8953393-8953412 None:intergenic 40.0%
! CTGATGCAAATTGGTTAGCT+GGG - Chr4:8953065-8953084 None:intergenic 40.0%
! GGGTCCATTGTAAAGCTTTT+AGG + Chr4:8953228-8953247 MsG0480018720.01.T01:CDS 40.0%
!! CTTAGAGATGTTGGTTCCAT+TGG + Chr4:8952363-8952382 MsG0480018720.01.T01:CDS 40.0%
!! GTACAAGAGTGTTCAGAACT+TGG + Chr4:8953284-8953303 MsG0480018720.01.T01:CDS 40.0%
!! TTTTGGCTAGCATTAGTGGT+GGG + Chr4:8952904-8952923 MsG0480018720.01.T01:intron 40.0%
!!! TTTTTGGCTAGCATTAGTGG+TGG + Chr4:8952903-8952922 MsG0480018720.01.T01:intron 40.0%
AAACCATGAACCCTCACTTG+AGG + Chr4:8952496-8952515 MsG0480018720.01.T01:intron 45.0%
AAACCTCAAGTGAGGGTTCA+TGG - Chr4:8952502-8952521 None:intergenic 45.0%
AATAAGGAATGTTGAGGGGC+TGG - Chr4:8953365-8953384 None:intergenic 45.0%
ACACAACATTGGCAAGCAAG+AGG + Chr4:8952420-8952439 MsG0480018720.01.T01:CDS 45.0%
ACACATCCAGCAAAAGAGTC+AGG - Chr4:8953255-8953274 None:intergenic 45.0%
AGCTTCCTTACCATGCCATT+GGG + Chr4:8953207-8953226 MsG0480018720.01.T01:CDS 45.0%
AGCTTTACAATGGACCCCAA+TGG - Chr4:8953225-8953244 None:intergenic 45.0%
ATCAGGGTCAGATAAACACG+AGG + Chr4:8952270-8952289 MsG0480018720.01.T01:CDS 45.0%
GTCAAGTCTGCATAACCCAA+TGG - Chr4:8952382-8952401 None:intergenic 45.0%
TAGCTTCCTTACCATGCCAT+TGG + Chr4:8953206-8953225 MsG0480018720.01.T01:CDS 45.0%
! GACTCTTTTGCTGGATGTGT+TGG + Chr4:8953255-8953274 MsG0480018720.01.T01:CDS 45.0%
! TGGTTTGGACACCTAAGTTG+TGG - Chr4:8953345-8953364 None:intergenic 45.0%
! TTAGGACCTGACTCTTTTGC+TGG + Chr4:8953246-8953265 MsG0480018720.01.T01:CDS 45.0%
! TTCAAGGTCGTTGATTGCAC+TGG + Chr4:8953494-8953513 MsG0480018720.01.T01:CDS 45.0%
ATTGCACTGGACCCAAGAGA+AGG + Chr4:8953507-8953526 MsG0480018720.01.T01:CDS 50.0%
ATTGTGGATAAATGCGGCCG+TGG + Chr4:8952542-8952561 MsG0480018720.01.T01:intron 50.0%
CTGGGATAGCACCACAACTT+AGG + Chr4:8953331-8953350 MsG0480018720.01.T01:CDS 50.0%
GCTTCCTTACCATGCCATTG+GGG + Chr4:8953208-8953227 MsG0480018720.01.T01:CDS 50.0%
TACAATGGACCCCAATGGCA+TGG - Chr4:8953220-8953239 None:intergenic 50.0%
TCACATCGGCATTGCAACCA+CGG - Chr4:8952562-8952581 None:intergenic 50.0%
! TGCGGCTGCAACTGTGTTTT+TGG + Chr4:8952601-8952620 MsG0480018720.01.T01:intron 50.0%
!! CTAAGTTGTGGTGCTATCCC+AGG - Chr4:8953333-8953352 None:intergenic 50.0%
AATCCCACAGCGCCTTCTCT+TGG - Chr4:8953522-8953541 None:intergenic 55.0%
ATCCCACAGCGCCTTCTCTT+GGG - Chr4:8953521-8953540 None:intergenic 55.0%
TGGACCCCAATGGCATGGTA+AGG - Chr4:8953215-8953234 None:intergenic 55.0%
!! GGAATGTTGAGGGGCTGGTT+TGG - Chr4:8953360-8953379 None:intergenic 55.0%
!! GACCCAAGAGAAGGCGCTGT+GGG + Chr4:8953516-8953535 MsG0480018720.01.T01:CDS 60.0%
!! GGACCCAAGAGAAGGCGCTG+TGG + Chr4:8953515-8953534 MsG0480018720.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr4 gene 8952259 8953713 8952259 ID=MsG0480018720.01;Name=MsG0480018720.01
Chr4 mRNA 8952259 8953713 8952259 ID=MsG0480018720.01.T01;Parent=MsG0480018720.01;Name=MsG0480018720.01.T01;_AED=0.48;_eAED=0.48;_QI=0|0|0|1|1|1|2|0|306
Chr4 exon 8952259 8952441 8952259 ID=MsG0480018720.01.T01:exon:2866;Parent=MsG0480018720.01.T01
Chr4 exon 8952976 8953713 8952976 ID=MsG0480018720.01.T01:exon:2867;Parent=MsG0480018720.01.T01
Chr4 CDS 8952259 8952441 8952259 ID=MsG0480018720.01.T01:cds;Parent=MsG0480018720.01.T01
Chr4 CDS 8952976 8953713 8952976 ID=MsG0480018720.01.T01:cds;Parent=MsG0480018720.01.T01
Gene Sequence

>MsG0480018720.01.T01

ATGAGTTATGTATCAGGGTCAGATAAACACGAGGTTAGAGAAAGTGGACAAAAGTTTTTGGTGTCCGATGATTTGAAGATTTTACCAAGTTCCATGTTGAGTTCCTTAGAGATGTTGGTTCCATTGGGTTATGCAGACTTGACTGAACTAGAAGAAGTCACACACAACATTGGCAAGCAAGAGATATTGAACCTCCTCAAGTATATCTTCACCTCTCATGAGCCTATTACAAATACAATTTTGGGAAGTAGCTCAAACAACAGAAACAACCCAGCTAACCAATTTGCATCAGTAGTTAGAGTAACACCTTGTCCCGATGATATCAGAAAAATGGATGTTAAAGTAATGCAAAGTAAGTCTCAGAAAAATATAATCTATGCAGAAGCGAACGGTGATTTTGTTGACTTCATTTTTAGCTTCCTTACCATGCCATTGGGGTCCATTGTAAAGCTTTTAGGACCTGACTCTTTTGCTGGATGTGTTGGTAATTTGTACAAGAGTGTTCAGAACTTGGACCCTACTTCTGTGTTACTTAATCCTGGGATAGCACCACAACTTAGGTGTCCAAACCAGCCCCTCAACATTCCTTATTTAATACCACAACCCACGTATTATTATGGTCTACAGAAAAATGATGATCACTATGACTATTATCCTTCAAAAGAAGGATTGATTTCTAAGTCATATGAACTAATTTTAAGTTCAAGGTCGTTGATTGCACTGGACCCAAGAGAAGGCGCTGTGGGATTTGTGAAGAGAGCAACATTATATGGTGTAGGAGATGATCTAAAAGTAAAACCAGTTTCTGCTAAGTTTTGCCTTTCATATCTGAAAGAACAGAATCTTCCTCTTGACGATCTTGAAGTGAAGGTGATAAGCATTGGTGAATTTGAGGTAAAGGTTGCTCTTATATTAGACTAA
Protein sequence

>MsG0480018720.01.T01

MSYVSGSDKHEVRESGQKFLVSDDLKILPSSMLSSLEMLVPLGYADLTELEEVTHNIGKQEILNLLKYIFTSHEPITNTILGSSSNNRNNPANQFASVVRVTPCPDDIRKMDVKVMQSKSQKNIIYAEANGDFVDFIFSFLTMPLGSIVKLLGPDSFAGCVGNLYKSVQNLDPTSVLLNPGIAPQLRCPNQPLNIPYLIPQPTYYYGLQKNDDHYDYYPSKEGLISKSYELILSSRSLIALDPREGAVGFVKRATLYGVGDDLKVKPVSAKFCLSYLKEQNLPLDDLEVKVISIGEFEVKVALILD*