AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480018554.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480018554.01.T01 MTR_4g017440 57.635 406 125 6 1 361 105 508 4.68e-143 415
MsG0480018554.01.T01 MTR_4g017410 57.317 410 109 5 1 361 98 490 5.24e-142 412
MsG0480018554.01.T01 MTR_4g017550 57.828 396 117 8 1 350 77 468 2.83e-137 399
MsG0480018554.01.T01 MTR_4g017830 55.635 417 133 9 1 366 97 512 1.43e-135 397
MsG0480018554.01.T01 MTR_4g019340 54.156 397 109 7 1 345 128 503 9.45e-122 361
MsG0480018554.01.T01 MTR_4g017470 52.970 404 119 7 1 361 101 476 7.51e-117 348
MsG0480018554.01.T01 MTR_4g017610 51.680 387 136 6 1 349 100 473 4.84e-115 343
MsG0480018554.01.T01 MTR_4g019310 35.680 412 205 13 1 361 95 497 2.78e-53 184
MsG0480018554.01.T01 MTR_7g058710 27.896 423 227 13 1 362 79 484 1.65e-30 121
MsG0480018554.01.T01 MTR_7g066430 30.072 419 217 13 1 357 83 487 1.27e-29 119
MsG0480018554.01.T01 MTR_7g066350 28.021 389 187 11 1 339 88 433 9.01e-29 116
MsG0480018554.01.T01 MTR_7g066340 28.744 414 207 15 1 366 91 464 1.07e-28 116
MsG0480018554.01.T01 MTR_7g066570 30.676 414 210 16 1 359 93 484 1.03e-27 114
MsG0480018554.01.T01 MTR_7g066410 29.613 439 210 15 1 355 89 512 2.09e-26 110
MsG0480018554.01.T01 MTR_7g063660 29.484 407 226 15 1 362 88 478 5.32e-26 108
MsG0480018554.01.T01 MTR_7g063840 27.182 401 238 13 1 362 89 474 1.49e-25 107
MsG0480018554.01.T01 MTR_7g063900 26.933 375 227 11 1 332 89 459 2.86e-25 107
MsG0480018554.01.T01 MTR_7g063880 27.889 398 231 12 1 361 90 468 1.44e-23 102
MsG0480018554.01.T01 MTR_7g066400 28.392 398 197 15 1 350 75 432 2.26e-23 101
MsG0480018554.01.T01 MTR_7g062280 28.000 425 222 14 1 362 89 492 5.33e-23 100
MsG0480018554.01.T01 MTR_7g066260 29.024 410 185 16 1 350 94 457 8.02e-23 99.8
MsG0480018554.01.T01 MTR_7g063890 26.757 370 227 10 1 329 106 472 1.74e-22 99.0
MsG0480018554.01.T01 MTR_7g063820 28.224 411 233 16 1 362 88 485 1.86e-20 92.8
MsG0480018554.01.T01 MTR_3g065200 25.722 381 214 11 1 349 72 415 2.77e-20 92.0
MsG0480018554.01.T01 MTR_2g029400 27.945 365 187 11 1 343 93 403 1.32e-19 89.7
MsG0480018554.01.T01 MTR_7g062300 27.778 396 222 14 1 350 91 468 2.35e-18 86.7
MsG0480018554.01.T01 MTR_7g066360 28.715 397 191 14 1 350 93 444 3.64e-18 85.9
MsG0480018554.01.T01 MTR_7g066580 26.585 410 194 14 1 348 74 438 1.88e-17 83.6
MsG0480018554.01.T01 MTR_1g041315 26.303 403 189 15 1 339 93 451 7.61e-17 82.0
MsG0480018554.01.T01 MTR_7g066280 26.382 398 232 14 1 350 1 385 8.28e-17 81.6
MsG0480018554.01.T01 MTR_7g063830 25.854 410 201 13 1 361 89 444 3.59e-16 79.7
MsG0480018554.01.T01 MTR_7g058700 28.682 258 132 10 1 210 584 837 3.40e-13 71.6
MsG0480018554.01.T01 MTR_4g019240 64.815 54 19 0 313 366 112 165 7.50e-13 67.0
MsG0480018554.01.T01 MTR_7g100420 27.758 281 138 12 113 350 134 392 7.44e-12 66.6
MsG0480018554.01.T01 MTR_7g066290 34.161 161 90 3 1 147 94 252 1.61e-11 65.9
MsG0480018554.01.T01 MTR_7g066680 28.090 267 132 9 113 335 37 287 4.76e-11 63.9
MsG0480018554.01.T01 MTR_7g066480 36.806 144 77 5 1 134 95 234 5.82e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480018554.01.T01 AT5G01140 29.777 403 225 13 1 361 72 458 4.48e-28 114
MsG0480018554.01.T01 AT5G01130 27.047 403 213 11 1 361 88 451 1.03e-23 102
MsG0480018554.01.T01 AT5G37320 27.644 416 215 15 1 355 89 479 5.17e-19 88.6
MsG0480018554.01.T01 AT5G01120 24.324 407 241 15 1 350 88 484 8.95e-19 88.2
MsG0480018554.01.T01 AT5G01150 26.024 415 240 14 1 363 88 487 2.67e-18 86.7
MsG0480018554.01.T01 AT5G43240 24.700 417 231 13 1 350 88 488 2.82e-18 86.7
MsG0480018554.01.T01 AT5G43240 24.700 417 231 13 1 350 88 488 2.82e-18 86.7
MsG0480018554.01.T01 AT5G43240 24.700 417 231 13 1 350 88 488 2.82e-18 86.7
MsG0480018554.01.T01 AT3G09140 25.522 431 220 17 1 355 88 493 1.27e-16 81.6
MsG0480018554.01.T01 AT3G09110 35.616 146 77 5 1 133 88 229 6.61e-15 75.5
MsG0480018554.01.T01 AT3G09120 32.895 152 80 5 1 133 84 232 3.51e-12 67.0

Find 83 sgRNAs with CRISPR-Local

Find 149 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCCATCTTACTTCTGTTAT+TGG 0.110802 4:-6530215 None:intergenic
AGGTGGGTTGTCTTTATTTA+TGG 0.129048 4:-6530155 None:intergenic
AAACGGAGAGGCCCGAAATT+TGG 0.237714 4:+6529143 MsG0480018554.01.T01:CDS
GACCCTCATAATCCAAATTT+CGG 0.256745 4:-6529155 None:intergenic
ACCAGATGCATCAATGTTTC+TGG 0.258927 4:+6529182 MsG0480018554.01.T01:CDS
TTTAAGCTGTTGATGGAGTT+GGG 0.330345 4:+6529249 MsG0480018554.01.T01:CDS
CTTTAAGCTGTTGATGGAGT+TGG 0.330640 4:+6529248 MsG0480018554.01.T01:CDS
ACCCTCATAATCCAAATTTC+GGG 0.340239 4:-6529154 None:intergenic
GTGAAGAGAGAAAGATTATA+TGG 0.341577 4:+6530682 MsG0480018554.01.T01:CDS
CAGTGATTCACATGGATTCT+TGG 0.342961 4:-6529001 None:intergenic
GGTCTCCCGGTCCACTAGTC+AGG 0.351688 4:-6530950 None:intergenic
GACTTACTTTAAGCTGTTGA+TGG 0.354471 4:+6529242 MsG0480018554.01.T01:CDS
TCTATTATATGAAAAGTGTT+TGG 0.358872 4:-6530547 None:intergenic
GCCTCTCACAAATACAGTTT+TGG 0.367086 4:+6530123 MsG0480018554.01.T01:CDS
ACACATCTAGCAAGAGAATT+AGG 0.374815 4:-6530361 None:intergenic
GGTTCCATTGTAAACCCTTT+GGG 0.391252 4:+6530337 MsG0480018554.01.T01:intron
TTTCGGGCCTCTCCGTTTGT+TGG 0.394456 4:-6529138 None:intergenic
GGAATGTTGAGGGGTTGGTT+TGG 0.398404 4:-6530466 None:intergenic
AGGTTCCATTGTAAACCCTT+TGG 0.407305 4:+6530336 MsG0480018554.01.T01:intron
TTTGGATCTCTCTTTCGCTT+TGG 0.411442 4:-6530529 None:intergenic
ATTTGTGAGAGGCTCATTAG+AGG 0.411502 4:-6530113 None:intergenic
GAGAGGCTCATTAGAGGTTA+AGG 0.411825 4:-6530107 None:intergenic
GGCCCGAAATTTGGATTATG+AGG 0.413487 4:+6529152 MsG0480018554.01.T01:CDS
CTTCTAGCATAATAATAAGT+AGG 0.413637 4:-6530502 None:intergenic
AGTGATTCACATGGATTCTT+GGG 0.421877 4:-6529000 None:intergenic
CATAAGGAATGTTGAGGGGT+TGG 0.425340 4:-6530471 None:intergenic
AAAACCTTCATTGCGCTTGT+GGG 0.435042 4:+6529112 MsG0480018554.01.T01:CDS
ACCAGAAACATTGATGCATC+TGG 0.438385 4:-6529183 None:intergenic
ATAATCTGATCGACGTGTCT+TGG 0.440733 4:-6530596 None:intergenic
CAAAACCTTCATTGCGCTTG+TGG 0.445825 4:+6529111 MsG0480018554.01.T01:CDS
AACACCTTCTTCTGACCTGT+GGG 0.448786 4:-6530650 None:intergenic
GTACAAGAGTGTGGAGAACT+TGG 0.454304 4:+6530393 MsG0480018554.01.T01:CDS
CTTGTTTAGGCACTTTCAAA+AGG 0.456406 4:-6530971 None:intergenic
CACCAATAACAGAAGTAAGA+TGG 0.479662 4:+6530213 MsG0480018554.01.T01:CDS
GGCACTTTCAAAAGGTCTCC+CGG 0.484483 4:-6530963 None:intergenic
GTTTCCCACAAGCGCAATGA+AGG 0.491621 4:-6529116 None:intergenic
GTTGGTGCAGATTGCTTAGG+TGG 0.494480 4:-6530172 None:intergenic
AATTCTCTTGCTAGATGTGT+TGG 0.497708 4:+6530364 MsG0480018554.01.T01:CDS
GGATTTAGTAACACAGACTT+GGG 0.501573 4:-6530418 None:intergenic
AAGTCTGTGTTACTAAATCC+TGG 0.510892 4:+6530421 MsG0480018554.01.T01:CDS
CAACACCTTCTTCTGACCTG+TGG 0.510979 4:-6530651 None:intergenic
CACACACAACATTGGCAAGC+AGG 0.511161 4:+6529302 MsG0480018554.01.T01:CDS
CAAAACTGTGGTGCTATACC+AGG 0.511808 4:-6530439 None:intergenic
CAAGAGAATTAGGTCCCAAA+GGG 0.512816 4:-6530351 None:intergenic
ACCGTTGGTGCAGATTGCTT+AGG 0.514244 4:-6530175 None:intergenic
AGGTCAGAAGAAGGTGTTGT+GGG 0.516558 4:+6530655 MsG0480018554.01.T01:CDS
TCTTGATGATCTTGAAGTGA+AGG 0.520149 4:+6530780 MsG0480018554.01.T01:CDS
TTACTTCTGTTATTGGTGCA+AGG 0.520562 4:-6530208 None:intergenic
AGGTTAAGGAGTACTTGAGT+AGG 0.522840 4:-6530093 None:intergenic
AGAGAAAGATTATATGGTGT+AGG 0.527909 4:+6530688 MsG0480018554.01.T01:CDS
ACCTTCTTCTGACCTGTGGG+GGG 0.528295 4:-6530647 None:intergenic
CACCTTCTTCTGACCTGTGG+GGG 0.535607 4:-6530648 None:intergenic
AGGATTTAGTAACACAGACT+TGG 0.536535 4:-6530419 None:intergenic
CCTTCTTCTGACCTGTGGGG+GGG 0.537658 4:-6530646 None:intergenic
TTCTAGCATAATAATAAGTA+GGG 0.542977 4:-6530501 None:intergenic
CTTCAAGATCATCAAGAGGA+AGG 0.549012 4:-6530774 None:intergenic
TTAAGCTGTTGATGGAGTTG+GGG 0.553198 4:+6529250 MsG0480018554.01.T01:CDS
TATAATAGAAGAATATATTG+AGG 0.577571 4:+6530561 MsG0480018554.01.T01:CDS
ACCTAAGCAATCTGCACCAA+CGG 0.593126 4:+6530174 MsG0480018554.01.T01:CDS
GCCCGAAATTTGGATTATGA+GGG 0.595994 4:+6529153 MsG0480018554.01.T01:CDS
GAAGTGAAGGAGATAAGCAT+TGG 0.596077 4:+6530793 MsG0480018554.01.T01:CDS
TTCACTTCAAGATCATCAAG+AGG 0.596185 4:-6530778 None:intergenic
GTCTCCCGGTCCACTAGTCA+GGG 0.599284 4:-6530949 None:intergenic
GCTTGTGGGAAACCAACAAA+CGG 0.604091 4:+6529126 MsG0480018554.01.T01:CDS
CAAGGCAATACTCTAACCGT+TGG 0.610766 4:-6530190 None:intergenic
TTGGTGCAGATTGCTTAGGT+GGG 0.612223 4:-6530171 None:intergenic
ACACCTTCTTCTGACCTGTG+GGG 0.612260 4:-6530649 None:intergenic
GCAAGAGAATTAGGTCCCAA+AGG 0.614629 4:-6530352 None:intergenic
AGGTCCCAAAGGGTTTACAA+TGG 0.619215 4:-6530341 None:intergenic
GAGGAAGTCACACACAACAT+TGG 0.621785 4:+6529294 MsG0480018554.01.T01:CDS
GATAAGCATTGGCGAAGCTG+AGG 0.630291 4:+6530804 MsG0480018554.01.T01:CDS
GCCAAAACTGTATTTGTGAG+AGG 0.630450 4:-6530124 None:intergenic
TTCAGACTTGACTCAACTAG+AGG 0.639443 4:+6529275 MsG0480018554.01.T01:CDS
TTTACATAAGGAATGTTGAG+GGG 0.645423 4:-6530475 None:intergenic
TTGATGTCAAGAATGCTCGA+AGG 0.662606 4:-6530920 None:intergenic
TGGTAACTTGTACAAGAGTG+TGG 0.668210 4:+6530384 MsG0480018554.01.T01:CDS
CAGGTCAGAAGAAGGTGTTG+TGG 0.671754 4:+6530654 MsG0480018554.01.T01:CDS
ACACAACATTGGCAAGCAGG+AGG 0.678135 4:+6529305 MsG0480018554.01.T01:CDS
TTCACGCACAGTGATTCACA+TGG 0.697640 4:-6529009 None:intergenic
CAGCTTAAAGTAAGTCACAG+AGG 0.704820 4:-6529235 None:intergenic
TGGGAAACCAACAAACGGAG+AGG 0.713749 4:+6529131 MsG0480018554.01.T01:CDS
TGGTTTGGACAACAAAACTG+TGG 0.726414 4:-6530451 None:intergenic
GATTTAGTAACACAGACTTG+GGG 0.736630 4:-6530417 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAATAGAAGAATATATTG+AGG + Chr4:6530561-6530580 MsG0480018554.01.T01:CDS 15.0%
!! TATTATTCTGTTACAAAAAA+AGG - Chr4:6529820-6529839 None:intergenic 15.0%
!!! ATTTAAGATCTATTGAATTT+TGG - Chr4:6529654-6529673 None:intergenic 15.0%
!!! TATTTTACCACAATAAATTA+AGG - Chr4:6529481-6529500 None:intergenic 15.0%
!!! TTTAAGATCTATTGAATTTT+GGG - Chr4:6529653-6529672 None:intergenic 15.0%
!! AAATTAATACTCACAATCTT+AGG + Chr4:6529705-6529724 MsG0480018554.01.T01:intron 20.0%
!! CAAACAAAAAACTTATTTGA+TGG - Chr4:6529063-6529082 None:intergenic 20.0%
!! CCTCAAAATTTATTATATTG+TGG + Chr4:6529546-6529565 MsG0480018554.01.T01:intron 20.0%
!! TCAATATCTATACATCAAAA+AGG - Chr4:6530072-6530091 None:intergenic 20.0%
!! TTCTAGCATAATAATAAGTA+GGG - Chr4:6530504-6530523 None:intergenic 20.0%
!! TTGATTGAAAGAAATATAGA+TGG - Chr4:6529985-6530004 None:intergenic 20.0%
!!! AAGATTGTGAGTATTAATTT+TGG - Chr4:6529705-6529724 None:intergenic 20.0%
!!! CCACAATATAATAAATTTTG+AGG - Chr4:6529549-6529568 None:intergenic 20.0%
!!! GTAAAATTTTGTTCTTGTTT+AGG - Chr4:6530987-6531006 None:intergenic 20.0%
!!! TCTATTATATGAAAAGTGTT+TGG - Chr4:6530550-6530569 None:intergenic 20.0%
!!! TTAAGATCTATTGAATTTTG+GGG - Chr4:6529652-6529671 None:intergenic 20.0%
! AACCAAAAATTAAAATCACG+AGG - Chr4:6529452-6529471 None:intergenic 25.0%
! ATAAAGAACAATGTAATGAG+AGG - Chr4:6529386-6529405 None:intergenic 25.0%
! ATTTCTTCTAACATGTCTTA+AGG - Chr4:6529849-6529868 None:intergenic 25.0%
! CTTCTAGCATAATAATAAGT+AGG - Chr4:6530505-6530524 None:intergenic 25.0%
! TAAAGAACAATGTAATGAGA+GGG - Chr4:6529385-6529404 None:intergenic 25.0%
! TTAGAGAAGTTATTAGTTAG+AGG + Chr4:6529784-6529803 MsG0480018554.01.T01:intron 25.0%
! TTTCTTCTAACATGTCTTAA+GGG - Chr4:6529848-6529867 None:intergenic 25.0%
!! AATTTCGAATTTGAAACACA+AGG + Chr4:6529671-6529690 MsG0480018554.01.T01:intron 25.0%
!! AGGAAATTATCAATTGCTTT+TGG - Chr4:6530052-6530071 None:intergenic 25.0%
!! TGTTCTTTATTTACTTGCAT+AGG + Chr4:6529396-6529415 MsG0480018554.01.T01:intron 25.0%
!! TTTTACATAAGGAATGTTGA+GGG - Chr4:6530479-6530498 None:intergenic 25.0%
!!! TCAATCAATTTTTCAATCCT+TGG + Chr4:6529997-6530016 MsG0480018554.01.T01:intron 25.0%
AAAATTAAAATCACGAGGTG+AGG - Chr4:6529447-6529466 None:intergenic 30.0%
AGAGAAAGATTATATGGTGT+AGG + Chr4:6530688-6530707 MsG0480018554.01.T01:CDS 30.0%
ATCCATCTTACTTCTGTTAT+TGG - Chr4:6530218-6530237 None:intergenic 30.0%
GTGAAGAGAGAAAGATTATA+TGG + Chr4:6530682-6530701 MsG0480018554.01.T01:CDS 30.0%
GTGAGGTTAATGATTAAGAT+TGG - Chr4:6529430-6529449 None:intergenic 30.0%
TTTACATAAGGAATGTTGAG+GGG - Chr4:6530478-6530497 None:intergenic 30.0%
! GTTTTACATAAGGAATGTTG+AGG - Chr4:6530480-6530499 None:intergenic 30.0%
!! AAGAACTTTGAAATCTTTGG+AGG + Chr4:6529911-6529930 MsG0480018554.01.T01:intron 30.0%
!! GGAAAGAACTTTGAAATCTT+TGG + Chr4:6529908-6529927 MsG0480018554.01.T01:intron 30.0%
!! TAAGTAGGGTGTTTTACATA+AGG - Chr4:6530490-6530509 None:intergenic 30.0%
!!! CACCTCGTGATTTTAATTTT+TGG + Chr4:6529447-6529466 MsG0480018554.01.T01:intron 30.0%
AACAATGTAATGAGAGGGTA+TGG - Chr4:6529380-6529399 None:intergenic 35.0%
AATTCTCTTGCTAGATGTGT+TGG + Chr4:6530364-6530383 MsG0480018554.01.T01:CDS 35.0%
ACAACATTAAGAGTTAGCCA+AGG - Chr4:6530017-6530036 None:intergenic 35.0%
ACACATCTAGCAAGAGAATT+AGG - Chr4:6530364-6530383 None:intergenic 35.0%
ACCCTCATAATCCAAATTTC+GGG - Chr4:6529157-6529176 None:intergenic 35.0%
AGGATTTAGTAACACAGACT+TGG - Chr4:6530422-6530441 None:intergenic 35.0%
AGTAGGACTATGTTTCCTAA+AGG - Chr4:6529594-6529613 None:intergenic 35.0%
AGTGATTCACATGGATTCTT+GGG - Chr4:6529003-6529022 None:intergenic 35.0%
CACCAATAACAGAAGTAAGA+TGG + Chr4:6530213-6530232 MsG0480018554.01.T01:CDS 35.0%
CTTGTTTAGGCACTTTCAAA+AGG - Chr4:6530974-6530993 None:intergenic 35.0%
GACCCTCATAATCCAAATTT+CGG - Chr4:6529158-6529177 None:intergenic 35.0%
GACTTACTTTAAGCTGTTGA+TGG + Chr4:6529242-6529261 MsG0480018554.01.T01:CDS 35.0%
GAGAAGTTATTAGTTAGAGG+AGG + Chr4:6529787-6529806 MsG0480018554.01.T01:intron 35.0%
GATTTAGTAACACAGACTTG+GGG - Chr4:6530420-6530439 None:intergenic 35.0%
GGATTTAGTAACACAGACTT+GGG - Chr4:6530421-6530440 None:intergenic 35.0%
GTAGGACTATGTTTCCTAAA+GGG - Chr4:6529593-6529612 None:intergenic 35.0%
TTACTTCTGTTATTGGTGCA+AGG - Chr4:6530211-6530230 None:intergenic 35.0%
TTAGGAAACATAGTCCTACT+AGG + Chr4:6529594-6529613 MsG0480018554.01.T01:intron 35.0%
TTATATTGTGGCTGCAATTG+TGG + Chr4:6529558-6529577 MsG0480018554.01.T01:intron 35.0%
TTCACTTCAAGATCATCAAG+AGG - Chr4:6530781-6530800 None:intergenic 35.0%
TTCGCTGCCTTAATTTATTG+TGG + Chr4:6529471-6529490 MsG0480018554.01.T01:intron 35.0%
TTTACGAGCTTTCACATGAA+TGG + Chr4:6529887-6529906 MsG0480018554.01.T01:intron 35.0%
! AAGTCTGTGTTACTAAATCC+TGG + Chr4:6530421-6530440 MsG0480018554.01.T01:CDS 35.0%
! ACAATGTAATGAGAGGGTAT+GGG - Chr4:6529379-6529398 None:intergenic 35.0%
! TCAAAATTTTCCCTGACTAG+TGG + Chr4:6530939-6530958 MsG0480018554.01.T01:CDS 35.0%
! TCTTGATGATCTTGAAGTGA+AGG + Chr4:6530780-6530799 MsG0480018554.01.T01:CDS 35.0%
! TTTAAGCTGTTGATGGAGTT+GGG + Chr4:6529249-6529268 MsG0480018554.01.T01:CDS 35.0%
!! AGGTGGGTTGTCTTTATTTA+TGG - Chr4:6530158-6530177 None:intergenic 35.0%
AAAACCTTCATTGCGCTTGT+GGG + Chr4:6529112-6529131 MsG0480018554.01.T01:CDS 40.0%
ACCAGAAACATTGATGCATC+TGG - Chr4:6529186-6529205 None:intergenic 40.0%
ACCAGATGCATCAATGTTTC+TGG + Chr4:6529182-6529201 MsG0480018554.01.T01:CDS 40.0%
AGGTTCCATTGTAAACCCTT+TGG + Chr4:6530336-6530355 MsG0480018554.01.T01:intron 40.0%
ATAATCTGATCGACGTGTCT+TGG - Chr4:6530599-6530618 None:intergenic 40.0%
ATGATATTCGCAGAAGCCAA+CGG + Chr4:6530271-6530290 MsG0480018554.01.T01:intron 40.0%
ATTTGACGTTGCGTATCAGT+TGG + Chr4:6529617-6529636 MsG0480018554.01.T01:intron 40.0%
ATTTGTGAGAGGCTCATTAG+AGG - Chr4:6530116-6530135 None:intergenic 40.0%
CAAGAGAATTAGGTCCCAAA+GGG - Chr4:6530354-6530373 None:intergenic 40.0%
CAGCTTAAAGTAAGTCACAG+AGG - Chr4:6529238-6529257 None:intergenic 40.0%
CAGTGATTCACATGGATTCT+TGG - Chr4:6529004-6529023 None:intergenic 40.0%
CTACATCATAACCGAAGTTG+TGG - Chr4:6529517-6529536 None:intergenic 40.0%
CTTCAAGATCATCAAGAGGA+AGG - Chr4:6530777-6530796 None:intergenic 40.0%
CTTCGGTTATGATGTAGTTG+TGG + Chr4:6529520-6529539 MsG0480018554.01.T01:intron 40.0%
GAAGTCAACAAAATCTCCGT+TGG - Chr4:6530290-6530309 None:intergenic 40.0%
GAAGTGAAGGAGATAAGCAT+TGG + Chr4:6530793-6530812 MsG0480018554.01.T01:CDS 40.0%
GATAAATGCTGCCACAACTT+CGG + Chr4:6529503-6529522 MsG0480018554.01.T01:intron 40.0%
GCCAAAACTGTATTTGTGAG+AGG - Chr4:6530127-6530146 None:intergenic 40.0%
GCCCGAAATTTGGATTATGA+GGG + Chr4:6529153-6529172 MsG0480018554.01.T01:CDS 40.0%
GGGTTTACAATGGAACCTAA+TGG - Chr4:6530334-6530353 None:intergenic 40.0%
GGTTCCATTGTAAACCCTTT+GGG + Chr4:6530337-6530356 MsG0480018554.01.T01:intron 40.0%
TACAATGGAACCTAATGGCA+TGG - Chr4:6530329-6530348 None:intergenic 40.0%
TTCAGACTTGACTCAACTAG+AGG + Chr4:6529275-6529294 MsG0480018554.01.T01:CDS 40.0%
TTGATGTCAAGAATGCTCGA+AGG - Chr4:6530923-6530942 None:intergenic 40.0%
TTTGGATCTCTCTTTCGCTT+TGG - Chr4:6530532-6530551 None:intergenic 40.0%
! CTTTAAGCTGTTGATGGAGT+TGG + Chr4:6529248-6529267 MsG0480018554.01.T01:CDS 40.0%
! GCCTCTCACAAATACAGTTT+TGG + Chr4:6530123-6530142 MsG0480018554.01.T01:CDS 40.0%
! TGGTAACTTGTACAAGAGTG+TGG + Chr4:6530384-6530403 MsG0480018554.01.T01:CDS 40.0%
! TGGTTTGGACAACAAAACTG+TGG - Chr4:6530454-6530473 None:intergenic 40.0%
! TTAAGCTGTTGATGGAGTTG+GGG + Chr4:6529250-6529269 MsG0480018554.01.T01:CDS 40.0%
!! AGGTTAAGGAGTACTTGAGT+AGG - Chr4:6530096-6530115 None:intergenic 40.0%
AACACCTTCTTCTGACCTGT+GGG - Chr4:6530653-6530672 None:intergenic 45.0%
ACCTAAGCAATCTGCACCAA+CGG + Chr4:6530174-6530193 MsG0480018554.01.T01:CDS 45.0%
ACGCAACGTCAAATCCTAGT+AGG - Chr4:6529611-6529630 None:intergenic 45.0%
AGCTTCCTTACCATGCCATT+AGG + Chr4:6530316-6530335 MsG0480018554.01.T01:intron 45.0%
AGGTCCCAAAGGGTTTACAA+TGG - Chr4:6530344-6530363 None:intergenic 45.0%
CAAAACCTTCATTGCGCTTG+TGG + Chr4:6529111-6529130 MsG0480018554.01.T01:CDS 45.0%
CAAGGCAATACTCTAACCGT+TGG - Chr4:6530193-6530212 None:intergenic 45.0%
CAAGTCAAGAGGAATCGAAG+AGG - Chr4:6530881-6530900 None:intergenic 45.0%
CATAAGGAATGTTGAGGGGT+TGG - Chr4:6530474-6530493 None:intergenic 45.0%
GAGAGGCTCATTAGAGGTTA+AGG - Chr4:6530110-6530129 None:intergenic 45.0%
GAGGAAGTCACACACAACAT+TGG + Chr4:6529294-6529313 MsG0480018554.01.T01:CDS 45.0%
GCAAGAGAATTAGGTCCCAA+AGG - Chr4:6530355-6530374 None:intergenic 45.0%
GCTTGTGGGAAACCAACAAA+CGG + Chr4:6529126-6529145 MsG0480018554.01.T01:CDS 45.0%
GGCCCGAAATTTGGATTATG+AGG + Chr4:6529152-6529171 MsG0480018554.01.T01:CDS 45.0%
TGGAACCTAATGGCATGGTA+AGG - Chr4:6530324-6530343 None:intergenic 45.0%
TTCACGCACAGTGATTCACA+TGG - Chr4:6529012-6529031 None:intergenic 45.0%
TTGGTGCAGATTGCTTAGGT+GGG - Chr4:6530174-6530193 None:intergenic 45.0%
! CAGGAGGTAATGGTATTGTG+TGG + Chr4:6529321-6529340 MsG0480018554.01.T01:intron 45.0%
! GTACAAGAGTGTGGAGAACT+TGG + Chr4:6530393-6530412 MsG0480018554.01.T01:CDS 45.0%
! GTTGCGTATCAGTTGGTGTT+AGG + Chr4:6529624-6529643 MsG0480018554.01.T01:intron 45.0%
! TGTGGCACGTTTTACCCTTT+AGG + Chr4:6529576-6529595 MsG0480018554.01.T01:intron 45.0%
!! AGGTCAGAAGAAGGTGTTGT+GGG + Chr4:6530655-6530674 MsG0480018554.01.T01:CDS 45.0%
!! ATTTTCCCTGACTAGTGGAC+CGG + Chr4:6530944-6530963 MsG0480018554.01.T01:CDS 45.0%
!! CAAAACTGTGGTGCTATACC+AGG - Chr4:6530442-6530461 None:intergenic 45.0%
!! TTCCTCTTGACTTGTGAACC+AGG + Chr4:6530887-6530906 MsG0480018554.01.T01:intron 45.0%
AAACGGAGAGGCCCGAAATT+TGG + Chr4:6529143-6529162 MsG0480018554.01.T01:CDS 50.0%
ACACAACATTGGCAAGCAGG+AGG + Chr4:6529305-6529324 MsG0480018554.01.T01:CDS 50.0%
ACACCTTCTTCTGACCTGTG+GGG - Chr4:6530652-6530671 None:intergenic 50.0%
ACCGTTGGTGCAGATTGCTT+AGG - Chr4:6530178-6530197 None:intergenic 50.0%
AGCCTGGTTCACAAGTCAAG+AGG - Chr4:6530892-6530911 None:intergenic 50.0%
CAACACCTTCTTCTGACCTG+TGG - Chr4:6530654-6530673 None:intergenic 50.0%
CACACACAACATTGGCAAGC+AGG + Chr4:6529302-6529321 MsG0480018554.01.T01:CDS 50.0%
CATTGGCAAGCAGGAGGTAA+TGG + Chr4:6529311-6529330 MsG0480018554.01.T01:intron 50.0%
CTCGAAGGAAGTTCAAAGCC+TGG - Chr4:6530908-6530927 None:intergenic 50.0%
GGCACTTTCAAAAGGTCTCC+CGG - Chr4:6530966-6530985 None:intergenic 50.0%
GTTGGTGCAGATTGCTTAGG+TGG - Chr4:6530175-6530194 None:intergenic 50.0%
GTTTCCCACAAGCGCAATGA+AGG - Chr4:6529119-6529138 None:intergenic 50.0%
TGGGAAACCAACAAACGGAG+AGG + Chr4:6529131-6529150 MsG0480018554.01.T01:CDS 50.0%
!! CAGGTCAGAAGAAGGTGTTG+TGG + Chr4:6530654-6530673 MsG0480018554.01.T01:CDS 50.0%
!! GATAAGCATTGGCGAAGCTG+AGG + Chr4:6530804-6530823 MsG0480018554.01.T01:CDS 50.0%
!! GGAATGTTGAGGGGTTGGTT+TGG - Chr4:6530469-6530488 None:intergenic 50.0%
!! TTTTCCCTGACTAGTGGACC+GGG + Chr4:6530945-6530964 MsG0480018554.01.T01:CDS 50.0%
ACCTTCTTCTGACCTGTGGG+GGG - Chr4:6530650-6530669 None:intergenic 55.0%
CACCTTCTTCTGACCTGTGG+GGG - Chr4:6530651-6530670 None:intergenic 55.0%
TTTCGGGCCTCTCCGTTTGT+TGG - Chr4:6529141-6529160 None:intergenic 55.0%
! GCATTGGCGAAGCTGAGGTA+AGG + Chr4:6530809-6530828 MsG0480018554.01.T01:intron 55.0%
CCTTCTTCTGACCTGTGGGG+GGG - Chr4:6530649-6530668 None:intergenic 60.0%
GTCTCCCGGTCCACTAGTCA+GGG - Chr4:6530952-6530971 None:intergenic 60.0%
ATGCACTCGATCCCCCCCAC+AGG + Chr4:6530635-6530654 MsG0480018554.01.T01:CDS 65.0%
CCCCCCCACAGGTCAGAAGA+AGG + Chr4:6530646-6530665 MsG0480018554.01.T01:CDS 65.0%
GGTCTCCCGGTCCACTAGTC+AGG - Chr4:6530953-6530972 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr4 gene 6528988 6531013 6528988 ID=MsG0480018554.01;Name=MsG0480018554.01
Chr4 mRNA 6528988 6531013 6528988 ID=MsG0480018554.01.T01;Parent=MsG0480018554.01;Name=MsG0480018554.01.T01;_AED=0.36;_eAED=0.36;_QI=0|0.33|0|1|1|1|4|0|366
Chr4 exon 6528988 6529326 6528988 ID=MsG0480018554.01.T01:exon:27283;Parent=MsG0480018554.01.T01
Chr4 exon 6530085 6530253 6530085 ID=MsG0480018554.01.T01:exon:27284;Parent=MsG0480018554.01.T01
Chr4 exon 6530338 6530825 6530338 ID=MsG0480018554.01.T01:exon:27285;Parent=MsG0480018554.01.T01
Chr4 exon 6530909 6531013 6530909 ID=MsG0480018554.01.T01:exon:27286;Parent=MsG0480018554.01.T01
Chr4 CDS 6528988 6529326 6528988 ID=MsG0480018554.01.T01:cds;Parent=MsG0480018554.01.T01
Chr4 CDS 6530085 6530253 6530085 ID=MsG0480018554.01.T01:cds;Parent=MsG0480018554.01.T01
Chr4 CDS 6530338 6530825 6530338 ID=MsG0480018554.01.T01:cds;Parent=MsG0480018554.01.T01
Chr4 CDS 6530909 6531013 6530909 ID=MsG0480018554.01.T01:cds;Parent=MsG0480018554.01.T01
Gene Sequence

>MsG0480018554.01.T01

ATGTTGCTGCATCCCAAGAATCCATGTGAATCACTGTGCGTGAAGCTGTTCTTGAATATTGATGACACTGAACCATCAAATAAGTTTTTTGTTTGTGATTCTTGTAACAAGTTCACTACTTTTCAAAACCTTCATTGCGCTTGTGGGAAACCAACAAACGGAGAGGCCCGAAATTTGGATTATGAGGGTCACAAACCAGATGCATCAATGTTTCTGGTATCTGATGACTTGAAGATTGTGCGATTTTCCTCTGTGACTTACTTTAAGCTGTTGATGGAGTTGGGGTATTCAGACTTGACTCAACTAGAGGAAGTCACACACAACATTGGCAAGCAGGAGATATTGAACCTACTCAAGTACTCCTTAACCTCTAATGAGCCTCTCACAAATACAGTTTTGGCATGTAGTTCCATAAATAAAGACAACCCACCTAAGCAATCTGCACCAACGGTTAGAGTATTGCCTTGCACCAATAACAGAAGTAAGATGGATGTTAAGATTGTGCAGAGTTCCATTGTAAACCCTTTGGGACCTAATTCTCTTGCTAGATGTGTTGGTAACTTGTACAAGAGTGTGGAGAACTTGGACCCCAAGTCTGTGTTACTAAATCCTGGTATAGCACCACAGTTTTGTTGTCCAAACCAACCCCTCAACATTCCTTATGTAAAACACCCTACTTATTATTATGCTAGAAGAATACCAAAGCGAAAGAGAGATCCAAACACTTTTCATATAATAGAAGAATATATTGAGGAAAGAGTGATTTCCAAGACACGTCGATCAGATTATTATTCAATAATCTTGAATGCACTCGATCCCCCCCACAGGTCAGAAGAAGGTGTTGTGGGATTTGTGAAGAGAGAAAGATTATATGGTGTAGGAGATGATCTGAAAGTAAAACAACTTTCAGATTATTTGCGTCTTTCATATTTGAAAGAGTTAAGCCTTCCTCTTGATGATCTTGAAGTGAAGGAGATAAGCATTGGCGAAGCTGAGGCTTTGAACTTCCTTCGAGCATTCTTGACATCAAAATTTTCCCTGACTAGTGGACCGGGAGACCTTTTGAAAGTGCCTAAACAAGAACAAAATTTTACTAACTAG
Protein sequence

>MsG0480018554.01.T01

MLLHPKNPCESLCVKLFLNIDDTEPSNKFFVCDSCNKFTTFQNLHCACGKPTNGEARNLDYEGHKPDASMFLVSDDLKIVRFSSVTYFKLLMELGYSDLTQLEEVTHNIGKQEILNLLKYSLTSNEPLTNTVLACSSINKDNPPKQSAPTVRVLPCTNNRSKMDVKIVQSSIVNPLGPNSLARCVGNLYKSVENLDPKSVLLNPGIAPQFCCPNQPLNIPYVKHPTYYYARRIPKRKRDPNTFHIIEEYIEERVISKTRRSDYYSIILNALDPPHRSEEGVVGFVKRERLYGVGDDLKVKQLSDYLRLSYLKELSLPLDDLEVKEISIGEAEALNFLRAFLTSKFSLTSGPGDLLKVPKQEQNFTN*