AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480018867.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480018867.01.T01 MTR_4g019340 87.143 490 34 4 8 491 37 503 0.0 832
MsG0480018867.01.T01 MTR_4g017830 75.283 530 124 4 3 530 6 530 0.0 788
MsG0480018867.01.T01 MTR_4g017440 67.194 506 156 6 3 505 8 506 0.0 649
MsG0480018867.01.T01 MTR_4g017410 63.985 522 147 8 1 510 1 493 0.0 631
MsG0480018867.01.T01 MTR_4g017470 62.548 518 147 6 1 510 1 479 0.0 593
MsG0480018867.01.T01 MTR_4g017550 65.817 471 141 9 36 501 18 473 0.0 590
MsG0480018867.01.T01 MTR_4g017610 58.990 495 175 8 4 497 8 475 0.0 555
MsG0480018867.01.T01 MTR_4g019310 44.204 509 249 18 1 497 1 486 8.90e-119 359
MsG0480018867.01.T01 MTR_7g066260 34.070 543 283 14 3 530 9 491 3.18e-83 267
MsG0480018867.01.T01 MTR_7g066340 34.438 543 270 16 2 530 5 475 8.31e-83 266
MsG0480018867.01.T01 MTR_7g066570 35.385 520 276 16 3 505 8 484 2.95e-79 259
MsG0480018867.01.T01 MTR_7g066350 34.674 522 256 14 1 503 1 456 1.51e-78 254
MsG0480018867.01.T01 MTR_7g066410 34.201 538 285 16 5 503 7 514 3.75e-76 249
MsG0480018867.01.T01 MTR_7g058710 32.197 528 292 12 1 507 1 483 1.85e-75 246
MsG0480018867.01.T01 MTR_7g066400 34.185 509 242 15 2 497 5 433 7.14e-72 236
MsG0480018867.01.T01 MTR_7g012680 33.781 521 248 15 3 505 8 449 2.34e-71 235
MsG0480018867.01.T01 MTR_7g012680 27.341 267 143 9 256 510 2 229 4.17e-13 72.0
MsG0480018867.01.T01 MTR_7g066430 35.039 508 287 13 10 501 5 485 3.34e-71 236
MsG0480018867.01.T01 MTR_1g041315 33.136 507 248 17 5 485 10 451 5.16e-69 230
MsG0480018867.01.T01 MTR_7g066360 33.210 539 283 14 3 531 8 479 1.49e-66 223
MsG0480018867.01.T01 MTR_7g062280 34.411 526 272 18 10 507 11 491 1.88e-64 218
MsG0480018867.01.T01 MTR_7g063660 32.177 519 298 15 1 507 1 477 1.53e-62 213
MsG0480018867.01.T01 MTR_7g062300 33.010 515 280 15 3 500 6 472 9.53e-62 210
MsG0480018867.01.T01 MTR_7g063880 32.227 512 276 16 10 506 12 467 2.67e-61 209
MsG0480018867.01.T01 MTR_7g063880 28.063 253 118 9 268 494 11 225 1.31e-12 70.5
MsG0480018867.01.T01 MTR_7g066580 31.200 500 268 13 15 499 1 439 4.20e-59 202
MsG0480018867.01.T01 MTR_7g063900 33.398 512 297 14 2 501 3 482 5.62e-59 203
MsG0480018867.01.T01 MTR_7g063840 30.934 514 302 12 3 507 4 473 8.59e-58 200
MsG0480018867.01.T01 MTR_7g066290 36.828 372 201 11 3 359 9 361 6.71e-57 196
MsG0480018867.01.T01 MTR_2g029400 29.779 497 242 10 1 489 6 403 2.02e-52 184
MsG0480018867.01.T01 MTR_7g063920 30.417 503 267 14 10 507 12 436 2.29e-52 184
MsG0480018867.01.T01 MTR_7g063820 32.890 526 292 17 1 507 1 484 5.76e-52 184
MsG0480018867.01.T01 MTR_7g063890 30.769 533 298 15 1 508 19 505 7.79e-52 184
MsG0480018867.01.T01 MTR_4g019240 76.471 119 22 3 4 121 8 121 1.74e-51 174
MsG0480018867.01.T01 MTR_4g019240 87.324 71 9 0 459 529 112 182 3.02e-30 117
MsG0480018867.01.T01 MTR_7g063830 30.326 521 272 16 1 507 1 444 3.19e-50 179
MsG0480018867.01.T01 MTR_7g063670 30.078 512 278 15 8 507 14 457 1.09e-45 167
MsG0480018867.01.T01 MTR_7g058700 33.520 358 159 13 21 350 531 837 4.52e-42 161
MsG0480018867.01.T01 MTR_7g066480 35.376 359 186 13 10 351 17 346 5.64e-42 156
MsG0480018867.01.T01 MTR_3g065200 27.586 493 269 14 10 495 4 415 1.20e-41 155
MsG0480018867.01.T01 MTR_3g007740 29.191 507 288 15 1 501 1 442 6.81e-41 153
MsG0480018867.01.T01 MTR_7g066280 28.821 458 255 14 98 530 1 412 1.22e-40 152
MsG0480018867.01.T01 MTR_7g066490 33.621 348 193 11 10 351 17 332 1.80e-37 143
MsG0480018867.01.T01 MTR_7g066310 34.962 266 117 5 268 530 193 405 1.93e-35 137
MsG0480018867.01.T01 MTR_7g066310 38.816 152 76 5 10 154 8 149 3.74e-24 105
MsG0480018867.01.T01 MTR_7g066310 33.846 130 77 3 268 388 7 136 3.72e-11 65.5
MsG0480018867.01.T01 MTR_7g066680 31.579 323 159 9 216 497 33 334 4.21e-28 115
MsG0480018867.01.T01 MTR_1g014060 32.609 230 128 7 18 239 9 219 8.46e-26 109
MsG0480018867.01.T01 MTR_1g014060 35.749 207 98 4 298 501 210 384 1.21e-21 97.4
MsG0480018867.01.T01 MTR_4g019350 51.485 101 36 2 326 425 1 89 1.58e-23 95.1
MsG0480018867.01.T01 MTR_7g063720 30.041 243 134 3 267 506 22 231 8.62e-23 97.8
MsG0480018867.01.T01 MTR_1g115440 29.880 251 148 7 2 241 4 237 2.94e-22 96.3
MsG0480018867.01.T01 MTR_1g115440 31.535 241 134 8 268 495 11 233 6.87e-20 89.4
MsG0480018867.01.T01 MTR_8g445860 29.365 252 122 6 268 495 13 232 9.96e-22 94.7
MsG0480018867.01.T01 MTR_8g445860 31.381 239 141 6 10 241 14 236 2.87e-20 90.5
MsG0480018867.01.T01 MTR_7g100420 30.887 327 196 8 173 497 95 393 4.26e-21 95.9
MsG0480018867.01.T01 MTR_7g063850 30.120 249 143 7 266 507 64 288 1.74e-20 92.4
MsG0480018867.01.T01 MTR_7g062270 35.000 200 101 8 1 191 1 180 5.46e-20 92.4
MsG0480018867.01.T01 MTR_0150s0010 31.356 236 141 6 268 495 10 232 2.02e-19 88.2
MsG0480018867.01.T01 MTR_0150s0010 30.677 251 146 8 2 241 3 236 7.13e-19 86.3
MsG0480018867.01.T01 MTR_8g023240 23.446 354 218 11 9 347 37 352 4.46e-18 87.8
MsG0480018867.01.T01 MTR_1g115455 27.626 257 144 5 1 241 1 231 3.00e-15 75.9
MsG0480018867.01.T01 MTR_1g115455 37.975 79 47 1 268 344 9 87 5.51e-11 63.2
MsG0480018867.01.T01 MTR_7g066390 43.137 102 55 2 429 530 50 148 1.11e-13 69.3
MsG0480018867.01.T01 MTR_0150s0030 35.294 102 57 2 268 366 8 103 1.19e-13 70.5
MsG0480018867.01.T01 MTR_8g445910 36.275 102 56 2 268 366 8 103 1.71e-13 71.2
MsG0480018867.01.T01 MTR_1g115450 40.506 79 45 1 268 344 7 85 9.06e-13 66.2
MsG0480018867.01.T01 MTR_1g115450 35.345 116 60 1 10 125 8 108 1.96e-12 65.1
MsG0480018867.01.T01 MTR_8g044880 36.275 102 56 2 268 366 8 103 1.11e-12 68.9
MsG0480018867.01.T01 MTR_6g006800 56.897 58 15 2 1 56 1 50 6.40e-12 61.6
MsG0480018867.01.T01 MTR_8g445920 40.909 66 39 0 268 333 10 75 2.18e-11 61.2
MsG0480018867.01.T01 MTR_8g044890 40.909 66 39 0 268 333 10 75 2.18e-11 61.2
MsG0480018867.01.T01 MTR_4g019330 44.318 88 46 3 422 507 102 188 5.21e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480018867.01.T01 AT5G01120 30.952 546 322 14 1 530 1 507 1.90e-62 213
MsG0480018867.01.T01 AT5G43240 32.370 519 281 16 10 497 10 489 4.45e-61 209
MsG0480018867.01.T01 AT5G43240 32.370 519 281 16 10 497 10 489 4.45e-61 209
MsG0480018867.01.T01 AT5G43240 32.370 519 281 16 10 497 10 489 4.45e-61 209
MsG0480018867.01.T01 AT3G09140 32.096 539 274 17 1 497 1 489 7.71e-61 209
MsG0480018867.01.T01 AT5G01130 31.864 499 276 14 3 498 4 441 2.72e-60 206
MsG0480018867.01.T01 AT3G09140 30.511 567 274 18 1 497 1 517 1.19e-55 195
MsG0480018867.01.T01 AT5G01140 31.471 537 291 19 3 530 4 472 3.24e-54 190
MsG0480018867.01.T01 AT5G01150 29.466 543 322 15 3 530 4 500 2.65e-51 183
MsG0480018867.01.T01 AT3G09110 34.706 340 189 9 1 329 1 318 5.01e-49 172
MsG0480018867.01.T01 AT3G09120 34.030 335 186 11 1 322 1 313 1.25e-44 160
MsG0480018867.01.T01 AT3G09120 29.958 237 144 9 268 495 6 229 1.23e-14 75.5
MsG0480018867.01.T01 AT5G37320 29.134 508 296 16 16 503 18 481 7.88e-44 162
MsG0480018867.01.T01 AT5G43240 30.168 358 203 10 160 497 15 345 1.51e-30 122

Find 119 sgRNAs with CRISPR-Local

Find 319 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAAAATGGGTCATTGTTTC+TGG 0.156709 4:-10795737 MsG0480018867.01.T01:CDS
TAATAAACAGCCTAATAATT+TGG 0.167423 4:-10795806 MsG0480018867.01.T01:CDS
GGGGTCTTTATTAAGGAAAA+TGG 0.196844 4:-10795751 MsG0480018867.01.T01:CDS
GAGTATAATTCTAGTTATTA+TGG 0.242560 4:-10792911 MsG0480018867.01.T01:CDS
ACAAAATGGGGTCTTTATTA+AGG 0.242621 4:-10795758 MsG0480018867.01.T01:CDS
GTCAAATTTGAATCTTGTTT+TGG 0.263154 4:+10791941 None:intergenic
TCTTCTTCAGAAGCCATGTT+AGG 0.276279 4:+10796258 None:intergenic
CAGGGGAATGAGGTACAAAA+TGG 0.288766 4:-10795772 MsG0480018867.01.T01:CDS
AAAGATTGTGCCAAGTTCTT+TGG 0.297409 4:-10795701 MsG0480018867.01.T01:CDS
ATAACTCAGTCTTCTAGTTT+AGG 0.304871 4:+10791872 None:intergenic
TTGCACCCACGACATTAAAA+TGG 0.305874 4:-10793260 MsG0480018867.01.T01:CDS
CCACTCACTACATATTATTA+TGG 0.320058 4:-10792953 MsG0480018867.01.T01:CDS
ATGCAGATATTGGTGGAATC+AGG 0.322458 4:-10795670 MsG0480018867.01.T01:CDS
CCCTCACTCCAAACGATGTT+TGG 0.334877 4:-10796002 MsG0480018867.01.T01:CDS
TTCTGATTTGAGTCAATTAC+AGG 0.342522 4:-10795644 MsG0480018867.01.T01:CDS
AGGGTCCATTGTAAAGGTTT+TGG 0.343635 4:-10793137 MsG0480018867.01.T01:CDS
GAGAGTGTCAACAAAGTCTT+TGG 0.349073 4:+10796167 None:intergenic
AGCTTCCTTACAATACCATT+AGG 0.351633 4:-10793157 MsG0480018867.01.T01:CDS
CACACACAACTTTGGAAAAC+AGG 0.361346 4:-10795617 MsG0480018867.01.T01:CDS
ACTGCTGATGCAAACTGGTT+TGG 0.367245 4:+10793295 None:intergenic
TAATTTGGATTCTGAGAGTC+AGG 0.371338 4:-10795791 MsG0480018867.01.T01:CDS
AGCAAAAGCCTTGACTGAAA+TGG 0.377248 4:-10792822 MsG0480018867.01.T01:CDS
CTCTCAGAATCCAAATTATT+AGG 0.379415 4:+10795796 None:intergenic
AGTGATTCACATGGATTCTT+CGG 0.381273 4:+10795949 None:intergenic
GCTTCCTTACAATACCATTA+GGG 0.381396 4:-10793156 MsG0480018867.01.T01:CDS
CATCGTTGTTTGTGGTTAAG+AGG 0.384127 4:+10796106 None:intergenic
AATAGTCACTCTAGGTTTAG+TGG 0.386189 4:+10796314 None:intergenic
CTTTGACTGCTGATGCAAAC+TGG 0.388699 4:+10793290 None:intergenic
GGTGACTTCCATGCAGATAT+TGG 0.389389 4:-10795680 MsG0480018867.01.T01:CDS
GGAATGTTGAGGGGCTGGTT+TGG 0.395287 4:+10792989 None:intergenic
ATATCTATTGTTCAAAAGAA+AGG 0.398805 4:+10791825 None:intergenic
CTAGAATTATACTCTTGCTT+TGG 0.399361 4:+10792920 None:intergenic
ACAGGGTTCCAAACATCGTT+TGG 0.403560 4:+10795994 None:intergenic
CAGAGGCTCATGAGAGGTTA+AGG 0.420057 4:+10793363 None:intergenic
CTTCTTCAGAAGCCATGTTA+GGG 0.435244 4:+10796259 None:intergenic
AACGGTAGAATTAAAGATAG+AGG 0.436841 4:-10792882 MsG0480018867.01.T01:CDS
GGGTCTTTATTAAGGAAAAT+GGG 0.437810 4:-10795750 MsG0480018867.01.T01:CDS
CAGGAAGTCACACACAACTT+TGG 0.438918 4:-10795625 MsG0480018867.01.T01:CDS
CAGAATCTTGATTGTACTTG+TGG 0.438965 4:-10795838 MsG0480018867.01.T01:CDS
ACTAGTTTGAACACACTTTG+AGG 0.444744 4:+10791919 None:intergenic
ATTATTAGGCTGTTTATTAG+TGG 0.447282 4:+10795810 None:intergenic
ACCATTAGGGTCCATTGTAA+AGG 0.460196 4:-10793143 MsG0480018867.01.T01:CDS
CGCTCCATGTTACTCAATCC+TGG 0.462371 4:-10793034 MsG0480018867.01.T01:CDS
TTGTTGATCATCGTTGTTTG+TGG 0.465421 4:+10796098 None:intergenic
AGGGGAATGAGGTACAAAAT+GGG 0.470146 4:-10795771 MsG0480018867.01.T01:CDS
CCAAACATCGTTTGGAGTGA+GGG 0.474902 4:+10796002 None:intergenic
ACCTTTACAATGGACCCTAA+TGG 0.477568 4:+10793142 None:intergenic
TTATTAGGCTGTTTATTAGT+GGG 0.484521 4:+10795811 None:intergenic
AACAACATTTGTTTGCAGAC+AGG 0.485916 4:+10795976 None:intergenic
CATGAGGAATGTTGAGGGGC+TGG 0.489637 4:+10792984 None:intergenic
GCTGATGCAAACTGGTTTGG+CGG 0.490283 4:+10793298 None:intergenic
ACAACATTTGTTTGCAGACA+GGG 0.497506 4:+10795977 None:intergenic
AACATGACTTGAGGAATGAT+AGG 0.500146 4:+10791684 None:intergenic
CAAAGTGTGTTCAAACTAGT+AGG 0.500953 4:-10791916 MsG0480018867.01.T01:CDS
ATGGAAGTCACCAAAGAACT+TGG 0.501440 4:+10795691 None:intergenic
GTACAAGAGTGTAGAGAGCT+TGG 0.505497 4:-10793080 MsG0480018867.01.T01:CDS
TCTTGGGTCCATTTCAGTCA+AGG 0.507464 4:+10792814 None:intergenic
TGGTGGCGAGTGGAAGAGAA+AGG 0.511396 4:+10796136 None:intergenic
ACTACATATTATTATGGTAC+AGG 0.518635 4:-10792947 MsG0480018867.01.T01:CDS
TTCAAAATTGTATTTGTCAG+AGG 0.520812 4:+10793346 None:intergenic
TGAATATTGATGACACTGAA+TGG 0.522820 4:-10795909 MsG0480018867.01.T01:CDS
TTAATTCTTTCAAATATGAA+AGG 0.523699 4:+10792687 None:intergenic
TGGACCCTAATGGTATTGTA+AGG 0.526033 4:+10793152 None:intergenic
TCAAAGTGTGGTGCGACACC+AGG 0.529733 4:+10793016 None:intergenic
AGGCAAGAATTAGCAGAAAG+TGG 0.533853 4:+10792707 None:intergenic
TGTGGTTAAGAGGCGAATGA+TGG 0.534640 4:+10796116 None:intergenic
TTCTGAGAGTCAGGGGAATG+AGG 0.534729 4:-10795782 MsG0480018867.01.T01:CDS
CCTTGTTGATCTTGAAGTGA+AGG 0.535507 4:-10792657 MsG0480018867.01.T01:CDS
AAAGAATAAATAGTCACTCT+AGG 0.535579 4:+10796306 None:intergenic
TGCAGATATTGGTGGAATCA+GGG 0.535787 4:-10795669 MsG0480018867.01.T01:CDS
TCAAAATTTACACTGACTAG+TGG 0.539589 4:-10791986 MsG0480018867.01.T01:CDS
GAGGAATGATGTTGATTCTG+AGG 0.541322 4:+10796059 None:intergenic
CTGATGCAAACTGGTTTGGC+GGG 0.543289 4:+10793299 None:intergenic
CTTCAAGATCAACAAGGGGA+AGG 0.544062 4:+10792663 None:intergenic
ATTTACACTGACTAGTGGAC+TGG 0.547720 4:-10791981 MsG0480018867.01.T01:CDS
TAGAGAGCTTGGACTCTTCG+TGG 0.547747 4:-10793069 MsG0480018867.01.T01:CDS
TCCAAACATCGTTTGGAGTG+AGG 0.557226 4:+10796001 None:intergenic
TAGTTATTATGGTTATCAAA+CGG 0.564215 4:-10792900 MsG0480018867.01.T01:CDS
TAGTGGAAAGATAAGAAGAG+AGG 0.566551 4:+10796331 None:intergenic
GGAGTGATTTCTAAGTCGCA+TGG 0.571812 4:-10792857 MsG0480018867.01.T01:CDS
GTAGAATTAAAGATAGAGGG+AGG 0.580072 4:-10792878 MsG0480018867.01.T01:CDS
ACGGTAGAATTAAAGATAGA+GGG 0.581849 4:-10792881 MsG0480018867.01.T01:CDS
ACCATCCAAAACCTTTACAA+TGG 0.583435 4:+10793132 None:intergenic
TCTCCTACACTATATAATGC+CGG 0.585136 4:+10792746 None:intergenic
TCAGAATCAACATCATTCCT+CGG 0.586673 4:-10796057 MsG0480018867.01.T01:CDS
GAAGTCAACAAAGTTTCCAC+TGG 0.587458 4:+10793186 None:intergenic
GACTTCCATGCAGATATTGG+TGG 0.595400 4:-10795677 MsG0480018867.01.T01:CDS
AATTTGGATTCTGAGAGTCA+GGG 0.602975 4:-10795790 MsG0480018867.01.T01:CDS
CCTTCACTTCAAGATCAACA+AGG 0.610416 4:+10792657 None:intergenic
GATCTACTACAACCCTAACA+TGG 0.616070 4:-10796271 MsG0480018867.01.T01:exon
AGGTTAAGGTGTACTTGAGG+AGG 0.616375 4:+10793377 None:intergenic
CTAATAGATAACATGACTTG+AGG 0.620584 4:+10791675 None:intergenic
ATGTACATGAGGAATGTTGA+GGG 0.622021 4:+10792979 None:intergenic
AGGCGAATGATGGTGGCGAG+TGG 0.622630 4:+10796126 None:intergenic
ATTTGGATTCTGAGAGTCAG+GGG 0.625749 4:-10795789 MsG0480018867.01.T01:CDS
GTGAGTGGTGGATGTACATG+AGG 0.635076 4:+10792968 None:intergenic
TGATTCCACCAATATCTGCA+TGG 0.636872 4:+10795672 None:intergenic
GGGTTTGTACGCTTTCATAG+AGG 0.642551 4:+10796022 None:intergenic
TTGATGTCAAGGAAGCTGCA+AGG 0.648287 4:+10792005 None:intergenic
GGTGGGATTTGTGAAGAGAC+CGG 0.651602 4:-10792765 MsG0480018867.01.T01:CDS
CTTCACTTCAAGATCAACAA+GGG 0.654366 4:+10792658 None:intergenic
GAAGTGAAGGTGATATGCAT+TGG 0.654807 4:-10792644 MsG0480018867.01.T01:CDS
TAATAATATGTAGTGAGTGG+TGG 0.656097 4:+10792956 None:intergenic
AGACCGGCATTATATAGTGT+AGG 0.657855 4:-10792749 MsG0480018867.01.T01:CDS
TGGTTTGGACAATCAAAGTG+TGG 0.662188 4:+10793004 None:intergenic
TTCTTGCATAGTGATTCACA+TGG 0.666554 4:+10795940 None:intergenic
GAGAGGTTAAGGTGTACTTG+AGG 0.667782 4:+10793374 None:intergenic
GGGGAATGAGGTACAAAATG+GGG 0.670340 4:-10795770 MsG0480018867.01.T01:CDS
ATAATCTGTGCAGAAGCCAG+TGG 0.673897 4:-10793202 MsG0480018867.01.T01:CDS
ATTTGTCAGAGGCTCATGAG+AGG 0.675408 4:+10793357 None:intergenic
TTCACTTCAAGATCAACAAG+GGG 0.676098 4:+10792659 None:intergenic
GATGTACATGAGGAATGTTG+AGG 0.679220 4:+10792978 None:intergenic
ACACAACTTTGGAAAACAGG+AGG 0.691626 4:-10795614 MsG0480018867.01.T01:intron
GGTTAAGAGGCGAATGATGG+TGG 0.700313 4:+10796119 None:intergenic
GATATGCATTGGTGAAGCTG+AGG 0.712892 4:-10792633 MsG0480018867.01.T01:intron
ATGTCAAGGAAGCTGCAAGG+AGG 0.721178 4:+10792008 None:intergenic
CCATAATAATATGTAGTGAG+TGG 0.727149 4:+10792953 None:intergenic
GACACCAGGATTGAGTAACA+TGG 0.730789 4:+10793030 None:intergenic
TGTACATGAGGAATGTTGAG+GGG 0.757600 4:+10792980 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTAAAAGAATGTTATAT+TGG - Chr4:10794529-10794548 MsG0480018867.01.T01:intron 10.0%
!!! CAATTTATTTTTTTAAAACT+CGG + Chr4:10792797-10792816 None:intergenic 10.0%
!!! TTTTAAAAGAATGTTATATT+GGG - Chr4:10794530-10794549 MsG0480018867.01.T01:intron 10.0%
!! GAAATAATATGTTTAGATAT+AGG - Chr4:10795753-10795772 MsG0480018867.01.T01:CDS 15.0%
!! TAATAAAATTATTGGACTTA+TGG + Chr4:10795575-10795594 None:intergenic 15.0%
!! TCAAAATAACTAATGAATAA+TGG - Chr4:10793170-10793189 MsG0480018867.01.T01:CDS 15.0%
!! TTAATTCTTTCAAATATGAA+AGG + Chr4:10795313-10795332 None:intergenic 15.0%
!! TTTAAAAGAATGTTATATTG+GGG - Chr4:10794531-10794550 MsG0480018867.01.T01:intron 15.0%
!!! ACATCTTTTTTTAATTTGTT+GGG + Chr4:10795212-10795231 None:intergenic 15.0%
!!! TTTATAACTTTCGTTTTTTA+GGG - Chr4:10793338-10793357 MsG0480018867.01.T01:CDS 15.0%
!! AAATTAAAAAAAGATGTGGT+GGG - Chr4:10795215-10795234 MsG0480018867.01.T01:intron 20.0%
!! AATATGTTTAGATATAGGTT+GGG - Chr4:10795758-10795777 MsG0480018867.01.T01:CDS 20.0%
!! AATTCAATACCTCAAATTAT+AGG + Chr4:10793247-10793266 None:intergenic 20.0%
!! ATACAAGATATTAAACCAAA+CGG + Chr4:10794476-10794495 None:intergenic 20.0%
!! ATAGAGTACAATAGATTTAA+GGG + Chr4:10793627-10793646 None:intergenic 20.0%
!! ATATCTATTGTTCAAAAGAA+AGG + Chr4:10796175-10796194 None:intergenic 20.0%
!! ATTAGTTCGATAACTAAATA+AGG + Chr4:10793821-10793840 None:intergenic 20.0%
!! CAACAAATTAAAAAAAGATG+TGG - Chr4:10795211-10795230 MsG0480018867.01.T01:intron 20.0%
!! CAGAATAATTAGTGTAAAAA+TGG + Chr4:10793925-10793944 None:intergenic 20.0%
!! TAATAAACAGCCTAATAATT+TGG - Chr4:10792191-10792210 MsG0480018867.01.T01:intron 20.0%
!! TAATATGTTTAGATATAGGT+TGG - Chr4:10795757-10795776 MsG0480018867.01.T01:CDS 20.0%
!! TAGTTATTATGGTTATCAAA+CGG - Chr4:10795097-10795116 MsG0480018867.01.T01:intron 20.0%
!! TAGTTGTTGTACTTAAATTA+CGG - Chr4:10794100-10794119 MsG0480018867.01.T01:intron 20.0%
!! TTAGACAACAAATAAACAAA+AGG + Chr4:10795427-10795446 None:intergenic 20.0%
!! TTAGTTCGATAACTAAATAA+GGG + Chr4:10793820-10793839 None:intergenic 20.0%
!!! ATCTTTTTTTAATTTGTTGG+GGG + Chr4:10795210-10795229 None:intergenic 20.0%
!!! CACAGTTTCAAATATTTTTT+CGG + Chr4:10792835-10792854 None:intergenic 20.0%
!!! CACATCTTTTTTTAATTTGT+TGG + Chr4:10795213-10795232 None:intergenic 20.0%
!!! CATCTTTTTTTAATTTGTTG+GGG + Chr4:10795211-10795230 None:intergenic 20.0%
!!! CTTTATAACTTTCGTTTTTT+AGG - Chr4:10793337-10793356 MsG0480018867.01.T01:CDS 20.0%
!!! GAGTATAATTCTAGTTATTA+TGG - Chr4:10795086-10795105 MsG0480018867.01.T01:intron 20.0%
!!! TATAATTTGAGGTATTGAAT+TGG - Chr4:10793246-10793265 MsG0480018867.01.T01:CDS 20.0%
!!! TTGTTATTGTAGTAAAATGA+GGG - Chr4:10792902-10792921 MsG0480018867.01.T01:CDS 20.0%
! AAACATTCACAATGTTATGA+TGG - Chr4:10794064-10794083 MsG0480018867.01.T01:intron 25.0%
! AAAGAATAAATAGTCACTCT+AGG + Chr4:10791694-10791713 None:intergenic 25.0%
! AAATTATTGGACTTATGGAA+AGG + Chr4:10795570-10795589 None:intergenic 25.0%
! AATAGAAAGTGATAAACTCT+AGG + Chr4:10793538-10793557 None:intergenic 25.0%
! ACTACATATTATTATGGTAC+AGG - Chr4:10795050-10795069 MsG0480018867.01.T01:intron 25.0%
! AGAAAAAGATTTAACCTTCA+AGG - Chr4:10793722-10793741 MsG0480018867.01.T01:intron 25.0%
! ATAACTAAATAAGGGATGTA+AGG + Chr4:10793812-10793831 None:intergenic 25.0%
! ATCATCTGTTAAGAATAGAA+AGG - Chr4:10793378-10793397 MsG0480018867.01.T01:CDS 25.0%
! ATTATTAGGCTGTTTATTAG+TGG + Chr4:10792190-10792209 None:intergenic 25.0%
! CAAATTAAAAAAAGATGTGG+TGG - Chr4:10795214-10795233 MsG0480018867.01.T01:intron 25.0%
! CATTTGTATGTATGTTATCT+TGG - Chr4:10794555-10794574 MsG0480018867.01.T01:intron 25.0%
! GAAAAAGATTTAACCTTCAA+GGG - Chr4:10793723-10793742 MsG0480018867.01.T01:intron 25.0%
! GATAGAGTACAATAGATTTA+AGG + Chr4:10793628-10793647 None:intergenic 25.0%
! TAACAATGTCCTATAATTTG+AGG - Chr4:10793235-10793254 MsG0480018867.01.T01:CDS 25.0%
! TAACTAAATAAGGGATGTAA+GGG + Chr4:10793811-10793830 None:intergenic 25.0%
! TAAGAATAGAAAGGAAAGTA+AGG - Chr4:10793387-10793406 MsG0480018867.01.T01:CDS 25.0%
! TAATTTGAGTGAAGAGTTAA+AGG - Chr4:10794352-10794371 MsG0480018867.01.T01:intron 25.0%
! TACAAACATGTTATGAAACA+CGG + Chr4:10792598-10792617 None:intergenic 25.0%
! TAGTGTACCATAAATGAAAA+GGG - Chr4:10794026-10794045 MsG0480018867.01.T01:intron 25.0%
! TATAAAAAATGTAGTGTACC+TGG + Chr4:10795678-10795697 None:intergenic 25.0%
! TATCAATTAGGAACAATTTG+AGG + Chr4:10793867-10793886 None:intergenic 25.0%
! TTAGTGTACCATAAATGAAA+AGG - Chr4:10794025-10794044 MsG0480018867.01.T01:intron 25.0%
! TTATTAGGCTGTTTATTAGT+GGG + Chr4:10792189-10792208 None:intergenic 25.0%
! TTCAAAATTGTATTTGTCAG+AGG + Chr4:10794654-10794673 None:intergenic 25.0%
!! ATGTTTTCCCTTTTCATTTA+TGG + Chr4:10794036-10794055 None:intergenic 25.0%
!! CTCATTTTACTACAATAACA+AGG + Chr4:10792903-10792922 None:intergenic 25.0%
!! GAAGGTTAAATCTTTTTCTT+TGG + Chr4:10793721-10793740 None:intergenic 25.0%
!! TGAATCATTGTTCTAAATTG+TGG - Chr4:10792853-10792872 MsG0480018867.01.T01:CDS 25.0%
!!! CTTGTTATTGTAGTAAAATG+AGG - Chr4:10792901-10792920 MsG0480018867.01.T01:CDS 25.0%
!!! GTCAAATTTGAATCTTGTTT+TGG + Chr4:10796059-10796078 None:intergenic 25.0%
!!! TTTGTACCTTACTAGTTTTT+TGG - Chr4:10796200-10796219 MsG0480018867.01.T01:CDS 25.0%
!!! TTTTTAGGGTAGTTTGTATA+TGG - Chr4:10793352-10793371 MsG0480018867.01.T01:CDS 25.0%
!!! TTTTTTTAAAACTCGGTATC+CGG + Chr4:10792790-10792809 None:intergenic 25.0%
AACGGTAGAATTAAAGATAG+AGG - Chr4:10795115-10795134 MsG0480018867.01.T01:intron 30.0%
AATGTAGTAGTAGGGAATTA+GGG - Chr4:10793460-10793479 MsG0480018867.01.T01:intron 30.0%
ACAAAATGGGGTCTTTATTA+AGG - Chr4:10792239-10792258 MsG0480018867.01.T01:intron 30.0%
ACGGTAGAATTAAAGATAGA+GGG - Chr4:10795116-10795135 MsG0480018867.01.T01:intron 30.0%
AGAAACAGAATGTAGTAGTA+GGG - Chr4:10793452-10793471 MsG0480018867.01.T01:intron 30.0%
CCACTCACTACATATTATTA+TGG - Chr4:10795044-10795063 MsG0480018867.01.T01:intron 30.0%
CCATAATAATATGTAGTGAG+TGG + Chr4:10795047-10795066 None:intergenic 30.0%
CCTAATTGATATCATAAGCT+GGG - Chr4:10793876-10793895 MsG0480018867.01.T01:intron 30.0%
CTAATAGATAACATGACTTG+AGG + Chr4:10796325-10796344 None:intergenic 30.0%
CTAGAATTATACTCTTGCTT+TGG + Chr4:10795080-10795099 None:intergenic 30.0%
CTCTCAGAATCCAAATTATT+AGG + Chr4:10792204-10792223 None:intergenic 30.0%
GACAAACCAAAAAACTAGTA+AGG + Chr4:10796209-10796228 None:intergenic 30.0%
GCAATATTGGAACGAATATT+TGG + Chr4:10794160-10794179 None:intergenic 30.0%
GGGTCTTTATTAAGGAAAAT+GGG - Chr4:10792247-10792266 MsG0480018867.01.T01:intron 30.0%
GGTACACTAATAACTTTATG+TGG + Chr4:10794015-10794034 None:intergenic 30.0%
TAATAATATGTAGTGAGTGG+TGG + Chr4:10795044-10795063 None:intergenic 30.0%
TCCTAATTGATATCATAAGC+TGG - Chr4:10793875-10793894 MsG0480018867.01.T01:intron 30.0%
TGCACAGATAAGTAAGAATT+GGG - Chr4:10793486-10793505 MsG0480018867.01.T01:intron 30.0%
TGTTATGATGGTTTACTTAG+TGG - Chr4:10794076-10794095 MsG0480018867.01.T01:intron 30.0%
TTCGAATGCTATACATATCT+TGG - Chr4:10795871-10795890 MsG0480018867.01.T01:CDS 30.0%
TTGCACAGATAAGTAAGAAT+TGG - Chr4:10793485-10793504 MsG0480018867.01.T01:intron 30.0%
! AGTCAATATGCACTTTTGTT+GGG - Chr4:10796283-10796302 MsG0480018867.01.T01:five_prime_UTR 30.0%
! ATTTTCAGTGGAATCGTTTT+TGG + Chr4:10791766-10791785 None:intergenic 30.0%
! CTGTCTATTAAGATTTTCAG+TGG + Chr4:10791778-10791797 None:intergenic 30.0%
! TAGTCAATATGCACTTTTGT+TGG - Chr4:10796282-10796301 MsG0480018867.01.T01:five_prime_UTR 30.0%
! TCAAAATTTACACTGACTAG+TGG - Chr4:10796011-10796030 MsG0480018867.01.T01:CDS 30.0%
! TGAATATTGATGACACTGAA+TGG - Chr4:10792088-10792107 MsG0480018867.01.T01:intron 30.0%
! TGGAAGCATAAATAAAGATG+AGG + Chr4:10793995-10794014 None:intergenic 30.0%
! TTCTGATTTGAGTCAATTAC+AGG - Chr4:10792353-10792372 MsG0480018867.01.T01:intron 30.0%
!! ATAACTCAGTCTTCTAGTTT+AGG + Chr4:10796128-10796147 None:intergenic 30.0%
!! CAGTGTAAATTTTGATGTCA+AGG + Chr4:10796006-10796025 None:intergenic 30.0%
!!! AGACGTAGTTTTGTGATTTT+TGG - Chr4:10795715-10795734 MsG0480018867.01.T01:CDS 30.0%
!!! GACGTAGTTTTGTGATTTTT+GGG - Chr4:10795716-10795735 MsG0480018867.01.T01:CDS 30.0%
!!! TTTGCTTTTTGAACTTGCAT+TGG - Chr4:10793281-10793300 MsG0480018867.01.T01:CDS 30.0%
AAAGATTGTGCCAAGTTCTT+TGG - Chr4:10792296-10792315 MsG0480018867.01.T01:intron 35.0%
AAATCAAGAGGTAAGAATCC+TGG + Chr4:10795950-10795969 None:intergenic 35.0%
AAATTAGTAGGTCCTTGAAC+CGG - Chr4:10792768-10792787 MsG0480018867.01.T01:CDS 35.0%
AACAACATTTGTTTGCAGAC+AGG + Chr4:10792024-10792043 None:intergenic 35.0%
AACATGACTTGAGGAATGAT+AGG + Chr4:10796316-10796335 None:intergenic 35.0%
AACCGTAAAGGGAATAAGTT+GGG - Chr4:10793650-10793669 MsG0480018867.01.T01:intron 35.0%
AAGTAAGGAGGTAAATAGAG+CGG - Chr4:10793402-10793421 MsG0480018867.01.T01:intron 35.0%
AAGTTGGGTAAAAGAGAAGA+TGG - Chr4:10793665-10793684 MsG0480018867.01.T01:intron 35.0%
AATAGTCACTCTAGGTTTAG+TGG + Chr4:10791686-10791705 None:intergenic 35.0%
ACAACATTTGTTTGCAGACA+GGG + Chr4:10792023-10792042 None:intergenic 35.0%
ACACTGTTATTGTTACCGTT+TGG - Chr4:10794458-10794477 MsG0480018867.01.T01:intron 35.0%
ACCATCCAAAACCTTTACAA+TGG + Chr4:10794868-10794887 None:intergenic 35.0%
AGAACTATGTTGTGAATCGT+TGG - Chr4:10793026-10793045 MsG0480018867.01.T01:CDS 35.0%
AGATGAGGTGAATGAAGATA+AGG + Chr4:10793980-10793999 None:intergenic 35.0%
AGCTTCCTTACAATACCATT+AGG - Chr4:10794840-10794859 MsG0480018867.01.T01:intron 35.0%
AGTGATTCACATGGATTCTT+CGG + Chr4:10792051-10792070 None:intergenic 35.0%
ATCTGTACATCAAAAGGACA+GGG + Chr4:10794594-10794613 None:intergenic 35.0%
ATGTACATGAGGAATGTTGA+GGG + Chr4:10795021-10795040 None:intergenic 35.0%
CAAAGTGTGTTCAAACTAGT+AGG - Chr4:10796081-10796100 MsG0480018867.01.T01:CDS 35.0%
CAGAAACAGAATGTAGTAGT+AGG - Chr4:10793451-10793470 MsG0480018867.01.T01:intron 35.0%
CAGAATCTTGATTGTACTTG+TGG - Chr4:10792159-10792178 MsG0480018867.01.T01:intron 35.0%
CATAAGTGTCACATAAGTGA+CGG + Chr4:10792501-10792520 None:intergenic 35.0%
CCCAGCTTATGATATCAATT+AGG + Chr4:10793879-10793898 None:intergenic 35.0%
CCTGTAAATTGCAAATCAAG+AGG + Chr4:10795962-10795981 None:intergenic 35.0%
CTTCACTTCAAGATCAACAA+GGG + Chr4:10795342-10795361 None:intergenic 35.0%
CTTGTTACGAAGAGCAATAT+TGG + Chr4:10794173-10794192 None:intergenic 35.0%
GAATAGAAAGGAAAGTAAGG+AGG - Chr4:10793390-10793409 MsG0480018867.01.T01:intron 35.0%
GAATGTAGTAGTAGGGAATT+AGG - Chr4:10793459-10793478 MsG0480018867.01.T01:intron 35.0%
GCTTCCTTACAATACCATTA+GGG - Chr4:10794841-10794860 MsG0480018867.01.T01:intron 35.0%
GGGGTCTTTATTAAGGAAAA+TGG - Chr4:10792246-10792265 MsG0480018867.01.T01:intron 35.0%
GTAGAATTAAAGATAGAGGG+AGG - Chr4:10795119-10795138 MsG0480018867.01.T01:intron 35.0%
GTTCAAGGACCTACTAATTT+GGG + Chr4:10792768-10792787 None:intergenic 35.0%
TACCCAACTTATTCCCTTTA+CGG + Chr4:10793655-10793674 None:intergenic 35.0%
TACTCTATCAGAACCGTAAA+GGG - Chr4:10793639-10793658 MsG0480018867.01.T01:intron 35.0%
TAGTGGAAAGATAAGAAGAG+AGG + Chr4:10791669-10791688 None:intergenic 35.0%
TATCAGATGCGTATCAGTAT+CGG + Chr4:10795537-10795556 None:intergenic 35.0%
TATTGCTCTTCGTAACAAGT+TGG - Chr4:10794174-10794193 MsG0480018867.01.T01:intron 35.0%
TCAGAATCAACATCATTCCT+CGG - Chr4:10791940-10791959 MsG0480018867.01.T01:CDS 35.0%
TCATATCATACTGTGTATCC+AGG - Chr4:10795929-10795948 MsG0480018867.01.T01:CDS 35.0%
TCTCCTACACTATATAATGC+CGG + Chr4:10795254-10795273 None:intergenic 35.0%
TTCAACATGACACAGATATG+AGG + Chr4:10795908-10795927 None:intergenic 35.0%
TTCACTTCAAGATCAACAAG+GGG + Chr4:10795341-10795360 None:intergenic 35.0%
TTCAGCATCTGTACATCAAA+AGG + Chr4:10794600-10794619 None:intergenic 35.0%
TTCTTGCATAGTGATTCACA+TGG + Chr4:10792060-10792079 None:intergenic 35.0%
TTGTAGAGTAAGACCTTGTA+GGG - Chr4:10792613-10792632 MsG0480018867.01.T01:intron 35.0%
TTGTTGATCATCGTTGTTTG+TGG + Chr4:10791902-10791921 None:intergenic 35.0%
TTTGTAGAGTAAGACCTTGT+AGG - Chr4:10792612-10792631 MsG0480018867.01.T01:intron 35.0%
! AATTTGGATTCTGAGAGTCA+GGG - Chr4:10792207-10792226 MsG0480018867.01.T01:intron 35.0%
! ACTAGTTTGAACACACTTTG+AGG + Chr4:10796081-10796100 None:intergenic 35.0%
! AGTAAGAATTGGGAGAGTTT+TGG - Chr4:10793496-10793515 MsG0480018867.01.T01:intron 35.0%
! ATAGACTAGCCCACAAAAAA+TGG + Chr4:10792695-10792714 None:intergenic 35.0%
! ATGTTTAGATATAGGTTGGG+TGG - Chr4:10795761-10795780 MsG0480018867.01.T01:CDS 35.0%
! GGTTTGTCTGTTCAGTTTTA+TGG - Chr4:10796221-10796240 MsG0480018867.01.T01:CDS 35.0%
! GTAAGAATTGGGAGAGTTTT+GGG - Chr4:10793497-10793516 MsG0480018867.01.T01:intron 35.0%
! TAAGAATTGGGAGAGTTTTG+GGG - Chr4:10793498-10793517 MsG0480018867.01.T01:intron 35.0%
! TAATTTGGATTCTGAGAGTC+AGG - Chr4:10792206-10792225 MsG0480018867.01.T01:intron 35.0%
! TGTTTAGATATAGGTTGGGT+GGG - Chr4:10795762-10795781 MsG0480018867.01.T01:CDS 35.0%
! TTGGACTTATGGAAAGGTAT+TGG + Chr4:10795564-10795583 None:intergenic 35.0%
! TTGGATGGTAACTCTTTTGT+TGG - Chr4:10794879-10794898 MsG0480018867.01.T01:intron 35.0%
!! AACGTCCATTTTAATGTCGT+GGG + Chr4:10794745-10794764 None:intergenic 35.0%
!! AGTAGATGGGGAAAAGTATT+AGG + Chr4:10793591-10793610 None:intergenic 35.0%
!! CCTCTAAAACCTTTATCTTG+CGG - Chr4:10792975-10792994 MsG0480018867.01.T01:CDS 35.0%
!! CCTCTTGATTTGCAATTTAC+AGG - Chr4:10795959-10795978 MsG0480018867.01.T01:CDS 35.0%
!! GGAATTAGTTTGTCAGTTAG+AGG + Chr4:10793846-10793865 None:intergenic 35.0%
!! TAACGTCCATTTTAATGTCG+TGG + Chr4:10794746-10794765 None:intergenic 35.0%
!! TGGACTTATGGAAAGGTATT+GGG + Chr4:10795563-10795582 None:intergenic 35.0%
!! TTAATTTGTTGGGGGATCTT+GGG + Chr4:10795202-10795221 None:intergenic 35.0%
!! TTTAATTTGTTGGGGGATCT+TGG + Chr4:10795203-10795222 None:intergenic 35.0%
!! TTTTGACTGAATGTGTCTCT+AGG - Chr4:10792466-10792485 MsG0480018867.01.T01:intron 35.0%
!!! TCCATTGTAAAGGTTTTGGA+TGG - Chr4:10794864-10794883 MsG0480018867.01.T01:intron 35.0%
AAGTATTAGGATCAACCCTC+TGG + Chr4:10793578-10793597 None:intergenic 40.0%
AATTGCAACAGGAGTAGATG+GGG + Chr4:10793603-10793622 None:intergenic 40.0%
ACCATTAGGGTCCATTGTAA+AGG - Chr4:10794854-10794873 MsG0480018867.01.T01:intron 40.0%
ACCTTTACAATGGACCCTAA+TGG + Chr4:10794858-10794877 None:intergenic 40.0%
AGACCGGCATTATATAGTGT+AGG - Chr4:10795248-10795267 MsG0480018867.01.T01:intron 40.0%
AGAGAGAGTCATATACAAGC+GGG + Chr4:10793751-10793770 None:intergenic 40.0%
AGCAAAAGCCTTGACTGAAA+TGG - Chr4:10795175-10795194 MsG0480018867.01.T01:intron 40.0%
AGGCAAGAATTAGCAGAAAG+TGG + Chr4:10795293-10795312 None:intergenic 40.0%
AGGGGAATGAGGTACAAAAT+GGG - Chr4:10792226-10792245 MsG0480018867.01.T01:intron 40.0%
AGTAAAATGAGGGTAACGCA+GGG - Chr4:10792912-10792931 MsG0480018867.01.T01:CDS 40.0%
ATGCAGATATTGGTGGAATC+AGG - Chr4:10792327-10792346 MsG0480018867.01.T01:intron 40.0%
ATGGAAGTCACCAAAGAACT+TGG + Chr4:10792309-10792328 None:intergenic 40.0%
CAATTGCAACAGGAGTAGAT+GGG + Chr4:10793604-10793623 None:intergenic 40.0%
CAGAGAGAGTCATATACAAG+CGG + Chr4:10793752-10793771 None:intergenic 40.0%
CATCGTTGTTTGTGGTTAAG+AGG + Chr4:10791894-10791913 None:intergenic 40.0%
CATCTGTACATCAAAAGGAC+AGG + Chr4:10794595-10794614 None:intergenic 40.0%
CCTTCACTTCAAGATCAACA+AGG + Chr4:10795343-10795362 None:intergenic 40.0%
CCTTGTTGATCTTGAAGTGA+AGG - Chr4:10795340-10795359 MsG0480018867.01.T01:intron 40.0%
CTTCTTCAGAAGCCATGTTA+GGG + Chr4:10791741-10791760 None:intergenic 40.0%
GAACCGTAAAGGGAATAAGT+TGG - Chr4:10793649-10793668 MsG0480018867.01.T01:intron 40.0%
GAAGTCAACAAAGTTTCCAC+TGG + Chr4:10794814-10794833 None:intergenic 40.0%
GAAGTGAAGGTGATATGCAT+TGG - Chr4:10795353-10795372 MsG0480018867.01.T01:intron 40.0%
GAGACACATTCAGTCAAAAG+TGG + Chr4:10792465-10792484 None:intergenic 40.0%
GATCTACTACAACCCTAACA+TGG - Chr4:10791726-10791745 MsG0480018867.01.T01:three_prime_UTR 40.0%
GATGTACATGAGGAATGTTG+AGG + Chr4:10795022-10795041 None:intergenic 40.0%
GATTTAAGGGCAATTGCAAC+AGG + Chr4:10793614-10793633 None:intergenic 40.0%
GGAAAATGGGTCATTGTTTC+TGG - Chr4:10792260-10792279 MsG0480018867.01.T01:intron 40.0%
GGTTCAAGGACCTACTAATT+TGG + Chr4:10792769-10792788 None:intergenic 40.0%
GTACTCTATCAGAACCGTAA+AGG - Chr4:10793638-10793657 MsG0480018867.01.T01:intron 40.0%
TAAAGACACAGTTGTCTTCC+AGG - Chr4:10795657-10795676 MsG0480018867.01.T01:CDS 40.0%
TAGTAAAATGAGGGTAACGC+AGG - Chr4:10792911-10792930 MsG0480018867.01.T01:CDS 40.0%
TCGATGCCAACAAATCTGAA+CGG - Chr4:10793777-10793796 MsG0480018867.01.T01:intron 40.0%
TCTGATCCTATTGATCCAGA+GGG - Chr4:10793560-10793579 MsG0480018867.01.T01:intron 40.0%
TCTTCTTCAGAAGCCATGTT+AGG + Chr4:10791742-10791761 None:intergenic 40.0%
TGATTCCACCAATATCTGCA+TGG + Chr4:10792328-10792347 None:intergenic 40.0%
TGCAGATATTGGTGGAATCA+GGG - Chr4:10792328-10792347 MsG0480018867.01.T01:intron 40.0%
TGGACCCTAATGGTATTGTA+AGG + Chr4:10794848-10794867 None:intergenic 40.0%
TGTACATGAGGAATGTTGAG+GGG + Chr4:10795020-10795039 None:intergenic 40.0%
TGTAGAGTAAGACCTTGTAG+GGG - Chr4:10792614-10792633 MsG0480018867.01.T01:intron 40.0%
TTGCACCCACGACATTAAAA+TGG - Chr4:10794737-10794756 MsG0480018867.01.T01:intron 40.0%
TTTGAATGTGAGACCTTGAG+AGG + Chr4:10792661-10792680 None:intergenic 40.0%
! ACACAACTTTGGAAAACAGG+AGG - Chr4:10792383-10792402 MsG0480018867.01.T01:intron 40.0%
! AGGGTCCATTGTAAAGGTTT+TGG - Chr4:10794860-10794879 MsG0480018867.01.T01:intron 40.0%
! ATTTACACTGACTAGTGGAC+TGG - Chr4:10796016-10796035 MsG0480018867.01.T01:CDS 40.0%
! ATTTGGATTCTGAGAGTCAG+GGG - Chr4:10792208-10792227 MsG0480018867.01.T01:intron 40.0%
! CACACACAACTTTGGAAAAC+AGG - Chr4:10792380-10792399 MsG0480018867.01.T01:intron 40.0%
! CTTTGGAAAACAGGAGGTAA+TGG - Chr4:10792389-10792408 MsG0480018867.01.T01:intron 40.0%
! GTTTAGATATAGGTTGGGTG+GGG - Chr4:10795763-10795782 MsG0480018867.01.T01:CDS 40.0%
! TGGTTTGGACAATCAAAGTG+TGG + Chr4:10794996-10795015 None:intergenic 40.0%
! TTTAGATATAGGTTGGGTGG+GGG - Chr4:10795764-10795783 MsG0480018867.01.T01:CDS 40.0%
!! ACTTATGGAAAGGTATTGGG+GGG + Chr4:10795560-10795579 None:intergenic 40.0%
!! CCGCAAGATAAAGGTTTTAG+AGG + Chr4:10792978-10792997 None:intergenic 40.0%
!! GACTTATGGAAAGGTATTGG+GGG + Chr4:10795561-10795580 None:intergenic 40.0%
!! GAGAGTGTCAACAAAGTCTT+TGG + Chr4:10791833-10791852 None:intergenic 40.0%
!! GAGGAATGATGTTGATTCTG+AGG + Chr4:10791941-10791960 None:intergenic 40.0%
!! GGACTTATGGAAAGGTATTG+GGG + Chr4:10795562-10795581 None:intergenic 40.0%
!! GTGTGTGTGTGTTTTGGATA+GGG + Chr4:10794436-10794455 None:intergenic 40.0%
!! GTTCAGTTTTATGGACTCAG+TGG - Chr4:10796230-10796249 MsG0480018867.01.T01:CDS 40.0%
!! TATACAGCTCTGGCTTTAGT+TGG - Chr4:10792712-10792731 MsG0480018867.01.T01:CDS 40.0%
!! TGTGTGTGTGTGTTTTGGAT+AGG + Chr4:10794437-10794456 None:intergenic 40.0%
!!! ATCGTTGGTCTTTTCAGTCT+AGG - Chr4:10793041-10793060 MsG0480018867.01.T01:CDS 40.0%
!!! TCGTTGGTCTTTTCAGTCTA+GGG - Chr4:10793042-10793061 MsG0480018867.01.T01:CDS 40.0%
AAAACTCGGTATCCGGTTCA+AGG + Chr4:10792783-10792802 None:intergenic 45.0%
ACAGGGTTCCAAACATCGTT+TGG + Chr4:10792006-10792025 None:intergenic 45.0%
ACCAGATACGACACTGACAT+GGG + Chr4:10792573-10792592 None:intergenic 45.0%
ACTGCTGATGCAAACTGGTT+TGG + Chr4:10794705-10794724 None:intergenic 45.0%
AGCCCACAAAAAATGGCACA+GGG + Chr4:10792688-10792707 None:intergenic 45.0%
AGGTTAAGGTGTACTTGAGG+AGG + Chr4:10794623-10794642 None:intergenic 45.0%
ATAATCTGTGCAGAAGCCAG+TGG - Chr4:10794795-10794814 MsG0480018867.01.T01:intron 45.0%
ATTTGTCAGAGGCTCATGAG+AGG + Chr4:10794643-10794662 None:intergenic 45.0%
CAATTGCAGCCGCAAGATAA+AGG + Chr4:10792987-10793006 None:intergenic 45.0%
CAGGAAGTCACACACAACTT+TGG - Chr4:10792372-10792391 MsG0480018867.01.T01:intron 45.0%
CAGGGGAATGAGGTACAAAA+TGG - Chr4:10792225-10792244 MsG0480018867.01.T01:intron 45.0%
CTAAATTGTGGTCGCGATTG+TGG - Chr4:10792865-10792884 MsG0480018867.01.T01:CDS 45.0%
CTATGCTTCATAGACCACGT+GGG + Chr4:10795474-10795493 None:intergenic 45.0%
CTCTGATCCTATTGATCCAG+AGG - Chr4:10793559-10793578 MsG0480018867.01.T01:intron 45.0%
CTCTGGATCAATAGGATCAG+AGG + Chr4:10793561-10793580 None:intergenic 45.0%
CTTCAAGATCAACAAGGGGA+AGG + Chr4:10795337-10795356 None:intergenic 45.0%
CTTTGACTGCTGATGCAAAC+TGG + Chr4:10794710-10794729 None:intergenic 45.0%
GACACCAGGATTGAGTAACA+TGG + Chr4:10794970-10794989 None:intergenic 45.0%
GACATGAGTCAGAAGCTCTT+AGG + Chr4:10794293-10794312 None:intergenic 45.0%
GACTTCCATGCAGATATTGG+TGG - Chr4:10792320-10792339 MsG0480018867.01.T01:intron 45.0%
GAGACACCGTTCAGATTTGT+TGG + Chr4:10793786-10793805 None:intergenic 45.0%
GAGAGGTTAAGGTGTACTTG+AGG + Chr4:10794626-10794645 None:intergenic 45.0%
GATCAACCCTCTGGATCAAT+AGG + Chr4:10793569-10793588 None:intergenic 45.0%
GCAATTGCAACAGGAGTAGA+TGG + Chr4:10793605-10793624 None:intergenic 45.0%
GCTACTCGAACTGTAATGTC+TGG - Chr4:10793146-10793165 MsG0480018867.01.T01:CDS 45.0%
GCTACTCTGATGAGTGGTAA+AGG + Chr4:10794317-10794336 None:intergenic 45.0%
GGAGTGATTTCTAAGTCGCA+TGG - Chr4:10795140-10795159 MsG0480018867.01.T01:intron 45.0%
GGGGAATGAGGTACAAAATG+GGG - Chr4:10792227-10792246 MsG0480018867.01.T01:intron 45.0%
GGGTTTGTACGCTTTCATAG+AGG + Chr4:10791978-10791997 None:intergenic 45.0%
GGTGACTTCCATGCAGATAT+TGG - Chr4:10792317-10792336 MsG0480018867.01.T01:intron 45.0%
TAGCCCACAAAAAATGGCAC+AGG + Chr4:10792689-10792708 None:intergenic 45.0%
TCATAAGCTGGGCGATCTAT+TGG - Chr4:10793887-10793906 MsG0480018867.01.T01:intron 45.0%
TCTATGCTTCATAGACCACG+TGG + Chr4:10795475-10795494 None:intergenic 45.0%
TCTTGGGTCCATTTCAGTCA+AGG + Chr4:10795186-10795205 None:intergenic 45.0%
TGTGGTTAAGAGGCGAATGA+TGG + Chr4:10791884-10791903 None:intergenic 45.0%
TTGATGTCAAGGAAGCTGCA+AGG + Chr4:10795995-10796014 None:intergenic 45.0%
! AGAGGTTTTTGATGCTTCCG+AGG + Chr4:10791960-10791979 None:intergenic 45.0%
! CCAAACATCGTTTGGAGTGA+GGG + Chr4:10791998-10792017 None:intergenic 45.0%
! GATATGCATTGGTGAAGCTG+AGG - Chr4:10795364-10795383 MsG0480018867.01.T01:intron 45.0%
! GTACAAGAGTGTAGAGAGCT+TGG - Chr4:10794917-10794936 MsG0480018867.01.T01:intron 45.0%
! GTGTGTGTGTGTGTGTGTTT+TGG + Chr4:10794442-10794461 None:intergenic 45.0%
! TCCAAACATCGTTTGGAGTG+AGG + Chr4:10791999-10792018 None:intergenic 45.0%
!! GGTTGGTCTCCCAAATTAGT+AGG - Chr4:10792756-10792775 MsG0480018867.01.T01:CDS 45.0%
!!! CTCCCTGTGCCATTTTTTGT+GGG - Chr4:10792683-10792702 MsG0480018867.01.T01:CDS 45.0%
!!! TGGCGGGTTGTCTTTTTTCT+TGG + Chr4:10794685-10794704 None:intergenic 45.0%
!! TAAAGAATTAATAAAATTAT+TGG + Chr4:10795583-10795602 None:intergenic 5.0%
AACCGCGCTGTCTACTCATT+GGG + Chr4:10792740-10792759 None:intergenic 50.0%
AGTAAGACCTTGTAGGGGCT+TGG - Chr4:10792619-10792638 MsG0480018867.01.T01:intron 50.0%
ATGTCAAGGAAGCTGCAAGG+AGG + Chr4:10795992-10796011 None:intergenic 50.0%
CACCAGATACGACACTGACA+TGG + Chr4:10792574-10792593 None:intergenic 50.0%
CAGAGGCTCATGAGAGGTTA+AGG + Chr4:10794637-10794656 None:intergenic 50.0%
CCACAAAAAATGGCACAGGG+AGG + Chr4:10792685-10792704 None:intergenic 50.0%
CCCTCACTCCAAACGATGTT+TGG - Chr4:10791995-10792014 MsG0480018867.01.T01:CDS 50.0%
CGACATCGCAACTGCAATTG+CGG + Chr4:10792946-10792965 None:intergenic 50.0%
CGCAATGCTACTCTGATGAG+TGG + Chr4:10794323-10794342 None:intergenic 50.0%
CGCTCCATGTTACTCAATCC+TGG - Chr4:10794963-10794982 MsG0480018867.01.T01:intron 50.0%
GGTGGGATTTGTGAAGAGAC+CGG - Chr4:10795232-10795251 MsG0480018867.01.T01:intron 50.0%
GGTTAAGAGGCGAATGATGG+TGG + Chr4:10791881-10791900 None:intergenic 50.0%
GTAAGACCTTGTAGGGGCTT+GGG - Chr4:10792620-10792639 MsG0480018867.01.T01:intron 50.0%
TAGAGAGCTTGGACTCTTCG+TGG - Chr4:10794928-10794947 MsG0480018867.01.T01:intron 50.0%
! TTCTGAGAGTCAGGGGAATG+AGG - Chr4:10792215-10792234 MsG0480018867.01.T01:intron 50.0%
!! CTGATGCAAACTGGTTTGGC+GGG + Chr4:10794701-10794720 None:intergenic 50.0%
!! GCTGATGCAAACTGGTTTGG+CGG + Chr4:10794702-10794721 None:intergenic 50.0%
!! GTGAGTGGTGGATGTACATG+AGG + Chr4:10795032-10795051 None:intergenic 50.0%
!! TGGGCTAGTCTATACAGCTC+TGG - Chr4:10792702-10792721 MsG0480018867.01.T01:CDS 50.0%
!!! CCTCCCTGTGCCATTTTTTG+TGG - Chr4:10792682-10792701 MsG0480018867.01.T01:CDS 50.0%
AGCCCAATGAGTAGACAGCG+CGG - Chr4:10792735-10792754 MsG0480018867.01.T01:CDS 55.0%
ATACAAGCGGGAGCCCTTGA+AGG + Chr4:10793739-10793758 None:intergenic 55.0%
CAACCGCGCTGTCTACTCAT+TGG + Chr4:10792741-10792760 None:intergenic 55.0%
CAAGATCCCAAGCCCCTACA+AGG + Chr4:10792629-10792648 None:intergenic 55.0%
CAATGAGTAGACAGCGCGGT+TGG - Chr4:10792739-10792758 MsG0480018867.01.T01:CDS 55.0%
CATCGCAACTGCAATTGCGG+TGG + Chr4:10792943-10792962 None:intergenic 55.0%
CATGAGGAATGTTGAGGGGC+TGG + Chr4:10795016-10795035 None:intergenic 55.0%
CTTCATAGACCACGTGGGAG+GGG + Chr4:10795469-10795488 None:intergenic 55.0%
CTTGGAGTGTGCTCCTCTCA+AGG - Chr4:10792645-10792664 MsG0480018867.01.T01:CDS 55.0%
CTTGTAGGGGCTTGGGATCT+TGG - Chr4:10792627-10792646 MsG0480018867.01.T01:intron 55.0%
GCCCATGTCAGTGTCGTATC+TGG - Chr4:10792569-10792588 MsG0480018867.01.T01:intron 55.0%
GCTTCATAGACCACGTGGGA+GGG + Chr4:10795470-10795489 None:intergenic 55.0%
TCAAAGTGTGGTGCGACACC+AGG + Chr4:10794984-10795003 None:intergenic 55.0%
TGCTTCATAGACCACGTGGG+AGG + Chr4:10795471-10795490 None:intergenic 55.0%
TTCATAGACCACGTGGGAGG+GGG + Chr4:10795468-10795487 None:intergenic 55.0%
! TGGTGGCGAGTGGAAGAGAA+AGG + Chr4:10791864-10791883 None:intergenic 55.0%
!! GGAATGTTGAGGGGCTGGTT+TGG + Chr4:10795011-10795030 None:intergenic 55.0%
ACGTGGGAGGGGGATCAAAG+AGG + Chr4:10795458-10795477 None:intergenic 60.0%
TCTTTGATCCCCCTCCCACG+TGG - Chr4:10795457-10795476 MsG0480018867.01.T01:intron 60.0%
TGCGGCTGCAATTGCTGCTG+CGG - Chr4:10792993-10793012 MsG0480018867.01.T01:CDS 60.0%
!! AGGCGAATGATGGTGGCGAG+TGG + Chr4:10791874-10791893 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr4 gene 10791657 10796362 10791657 ID=MsG0480018867.01;Name=MsG0480018867.01
Chr4 mRNA 10791657 10796362 10791657 ID=MsG0480018867.01.T01;Parent=MsG0480018867.01;Name=MsG0480018867.01.T01;_AED=0.41;_eAED=0.41;_QI=88|1|1|1|1|1|3|220|531
Chr4 exon 10791657 10792038 10791657 ID=MsG0480018867.01.T01:exon:3662;Parent=MsG0480018867.01.T01
Chr4 exon 10792634 10793407 10792634 ID=MsG0480018867.01.T01:exon:3661;Parent=MsG0480018867.01.T01
Chr4 exon 10795615 10796362 10795615 ID=MsG0480018867.01.T01:exon:3660;Parent=MsG0480018867.01.T01
Chr4 five_prime_UTR 10796275 10796362 10796275 ID=MsG0480018867.01.T01:five_prime_utr;Parent=MsG0480018867.01.T01
Chr4 CDS 10795615 10796274 10795615 ID=MsG0480018867.01.T01:cds;Parent=MsG0480018867.01.T01
Chr4 CDS 10792634 10793407 10792634 ID=MsG0480018867.01.T01:cds;Parent=MsG0480018867.01.T01
Chr4 CDS 10791877 10792038 10791877 ID=MsG0480018867.01.T01:cds;Parent=MsG0480018867.01.T01
Chr4 three_prime_UTR 10791657 10791876 10791657 ID=MsG0480018867.01.T01:three_prime_utr;Parent=MsG0480018867.01.T01
Gene Sequence

>MsG0480018867.01.T01

ATGGCTTCTGAAGAAGAGCCAAAAACGATTCCACTGAAAATCTTAATAGACAGAGAAAACAACAAAGTAGTCGCTGTAGAATCAACCAAAGACTTTGTTGACACTCTCTTCAGCTTCCTTTCTCTTCCACTCGCCACCATCATTCGCCTCTTAACCACAAACAACGATGATCAACAACAACAAGAACAACAATCCTCAGAATCAACATCATTCCTCGGAAGCATCAAAAACCTCTATGAAAGCGTACAAACCCTCACTCCAAACGATGTTTGGAACCCTGTCTGCAAACAAATGTTGTTGAATCCGAAGAATCCATGTGAATCACTATGCAAGAAGCTTTTCTTGAATATTGATGACACTGAATGGTCAAGTAAGTTTTTTGTGTGTGATGCTTGTAACAAGTTTACAACTTTTCAGAATCTTGATTGTACTTGTGGAAAACCCACTAATAAACAGCCTAATAATTTGGATTCTGAGAGTCAGGGGAATGAGGTACAAAATGGGGTCTTTATTAAGGAAAATGGGTCATTGTTTCTGGTGTCTGATGATTTAAAGATTGTGCCAAGTTCTTTGGTGACTTCCATGCAGATATTGGTGGAATCAGGGTATTCTGATTTGAGTCAATTACAGGAAGTCACACACAACTTTGGAAAACAGGAGATGCTGAACCTCCTCAAGTACACCTTAACCTCTCATGAGCCTCTGACAAATACAATTTTGAAAAGCAGCTCCAAGAAAAAAGACAACCCGCCAAACCAGTTTGCATCAGCAGTCAAAGTAAAAACTTGCACCCACGACATTAAAATGGACGTTAAGCTAGTGCGAAGTAAATCTCAGAAAAAGATAATCTGTGCAGAAGCCAGTGGAAACTTTGTTGACTTCATGTTTAGCTTCCTTACAATACCATTAGGGTCCATTGTAAAGGTTTTGGATGGTAACTCTTTTGTTGGATGTGTTGATAATTTGTACAAGAGTGTAGAGAGCTTGGACTCTTCGTGGTGTACAAACTCGCGCTCCATGTTACTCAATCCTGGTGTCGCACCACACTTTGATTGTCCAAACCAGCCCCTCAACATTCCTCATGTACATCCACCACTCACTACATATTATTATGGTACAGGAACACCAAAGCAAGAGTATAATTCTAGTTATTATGGTTATCAAACGGTAGAATTAAAGATAGAGGGAGGAGTGATTTCTAAGTCGCATGGATTGATTTATAAAGCAAAAGCCTTGACTGAAATGGACCCAAGATCCCCCAACAAATTAAAAAAAGATGTGGTGGGATTTGTGAAGAGACCGGCATTATATAGTGTAGGAGATGATCTAAAAGTAAAACCACTTTCTGCTAATTCTTGCCTTTCATATTTGAAAGAATTAAACCTTCCCCTTGTTGATCTTGAAGTGAAGGTGATATGCATTGGTGAAGCTGAGGCTTTGAGCCTCCTTGCAGCTTCCTTGACATCAAAATTTACACTGACTAGTGGACTGGAAGAATTTTTTAATGAGCCAAAACAAGATTCAAATTTGACCTCAAAGTGTGTTCAAACTAGTAGGCTTGATAAAGTTGCAAAGAAGCCTAAACTAGAAGACTGA
Protein sequence

>MsG0480018867.01.T01

MASEEEPKTIPLKILIDRENNKVVAVESTKDFVDTLFSFLSLPLATIIRLLTTNNDDQQQQEQQSSESTSFLGSIKNLYESVQTLTPNDVWNPVCKQMLLNPKNPCESLCKKLFLNIDDTEWSSKFFVCDACNKFTTFQNLDCTCGKPTNKQPNNLDSESQGNEVQNGVFIKENGSLFLVSDDLKIVPSSLVTSMQILVESGYSDLSQLQEVTHNFGKQEMLNLLKYTLTSHEPLTNTILKSSSKKKDNPPNQFASAVKVKTCTHDIKMDVKLVRSKSQKKIICAEASGNFVDFMFSFLTIPLGSIVKVLDGNSFVGCVDNLYKSVESLDSSWCTNSRSMLLNPGVAPHFDCPNQPLNIPHVHPPLTTYYYGTGTPKQEYNSSYYGYQTVELKIEGGVISKSHGLIYKAKALTEMDPRSPNKLKKDVVGFVKRPALYSVGDDLKVKPLSANSCLSYLKELNLPLVDLEVKVICIGEAEALSLLAASLTSKFTLTSGLEEFFNEPKQDSNLTSKCVQTSRLDKVAKKPKLED*