AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480018739.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480018739.01.T01 MTR_4g017470 77.262 431 59 2 1 430 101 493 0.0 655
MsG0480018739.01.T01 MTR_4g017470 25.692 253 113 5 169 403 9 204 4.85e-11 65.1
MsG0480018739.01.T01 MTR_4g017410 73.721 430 85 3 1 426 98 503 0.0 624
MsG0480018739.01.T01 MTR_4g017410 28.571 252 139 10 171 400 8 240 9.43e-14 73.6
MsG0480018739.01.T01 MTR_4g017440 68.357 414 120 4 1 413 105 508 0.0 560
MsG0480018739.01.T01 MTR_4g017550 71.429 406 102 5 1 404 77 470 0.0 556
MsG0480018739.01.T01 MTR_4g017830 67.458 421 125 5 1 416 97 510 0.0 555
MsG0480018739.01.T01 MTR_4g019340 68.408 402 96 4 1 397 128 503 0.0 540
MsG0480018739.01.T01 MTR_4g017610 57.320 403 145 6 1 403 100 475 1.55e-148 431
MsG0480018739.01.T01 MTR_4g019310 40.972 432 211 15 1 415 95 499 6.74e-84 266
MsG0480018739.01.T01 MTR_4g019310 26.939 245 149 6 172 400 8 238 3.61e-13 71.6
MsG0480018739.01.T01 MTR_7g058710 33.565 432 241 15 1 413 79 483 1.08e-55 191
MsG0480018739.01.T01 MTR_7g058710 26.556 241 148 6 165 400 5 221 3.59e-15 77.8
MsG0480018739.01.T01 MTR_7g066570 33.184 446 243 16 1 426 93 503 1.21e-53 188
MsG0480018739.01.T01 MTR_7g066340 30.505 436 231 12 1 422 91 468 1.41e-51 181
MsG0480018739.01.T01 MTR_7g066340 25.600 250 149 8 165 400 5 231 4.37e-14 74.3
MsG0480018739.01.T01 MTR_7g066350 31.604 424 219 10 1 412 88 452 1.61e-51 180
MsG0480018739.01.T01 MTR_7g066260 32.697 419 214 14 1 404 94 459 1.31e-48 173
MsG0480018739.01.T01 MTR_7g066260 30.204 245 130 9 172 400 15 234 3.14e-15 77.8
MsG0480018739.01.T01 MTR_7g066430 34.253 435 243 15 1 416 83 493 7.50e-48 171
MsG0480018739.01.T01 MTR_7g066400 33.019 424 214 15 1 412 75 440 1.02e-47 169
MsG0480018739.01.T01 MTR_7g066410 33.185 449 235 14 1 408 89 513 1.37e-47 171
MsG0480018739.01.T01 MTR_7g062280 32.579 442 230 14 1 413 89 491 2.81e-45 164
MsG0480018739.01.T01 MTR_7g062280 25.911 247 146 9 173 400 11 239 5.62e-11 64.7
MsG0480018739.01.T01 MTR_7g063660 31.776 428 239 14 1 413 88 477 2.27e-42 155
MsG0480018739.01.T01 MTR_7g063660 35.200 125 70 3 171 288 8 128 1.38e-14 75.9
MsG0480018739.01.T01 MTR_7g063900 32.614 417 250 12 1 408 89 483 5.73e-42 155
MsG0480018739.01.T01 MTR_7g063900 26.230 244 139 7 171 400 9 225 5.00e-13 71.2
MsG0480018739.01.T01 MTR_7g063880 30.930 430 229 16 1 413 90 468 2.04e-40 150
MsG0480018739.01.T01 MTR_7g012680 31.382 427 211 15 1 413 93 451 4.60e-40 149
MsG0480018739.01.T01 MTR_7g012680 33.981 103 61 2 170 265 12 114 3.01e-11 65.5
MsG0480018739.01.T01 MTR_7g062300 31.429 420 236 14 1 406 91 472 7.27e-40 149
MsG0480018739.01.T01 MTR_7g062300 26.141 241 145 8 171 400 11 229 1.41e-11 66.6
MsG0480018739.01.T01 MTR_1g041315 30.788 419 202 16 1 391 93 451 4.53e-39 147
MsG0480018739.01.T01 MTR_7g063840 29.621 422 251 9 1 413 89 473 2.56e-36 139
MsG0480018739.01.T01 MTR_7g066360 31.566 415 212 13 1 404 93 446 1.13e-35 137
MsG0480018739.01.T01 MTR_7g066360 27.119 236 138 8 162 386 4 216 2.04e-12 69.3
MsG0480018739.01.T01 MTR_7g063820 31.002 429 248 13 1 413 88 484 2.82e-35 136
MsG0480018739.01.T01 MTR_7g063890 31.350 437 238 17 1 413 106 504 5.31e-35 136
MsG0480018739.01.T01 MTR_7g063830 30.445 427 212 14 1 413 89 444 2.66e-34 133
MsG0480018739.01.T01 MTR_7g066280 26.905 420 256 12 1 403 1 386 6.79e-34 131
MsG0480018739.01.T01 MTR_7g066580 29.302 430 219 16 1 407 74 441 1.48e-33 131
MsG0480018739.01.T01 MTR_3g065200 30.000 410 212 14 1 401 72 415 1.27e-32 129
MsG0480018739.01.T01 MTR_3g007740 29.157 415 238 12 2 408 77 443 3.48e-32 127
MsG0480018739.01.T01 MTR_7g066310 27.119 413 172 11 1 403 86 379 9.24e-31 122
MsG0480018739.01.T01 MTR_7g058700 32.509 283 135 11 1 255 584 838 7.63e-30 123
MsG0480018739.01.T01 MTR_7g063670 29.356 419 245 13 2 413 83 457 2.70e-29 119
MsG0480018739.01.T01 MTR_7g063920 27.446 419 226 11 1 413 90 436 1.17e-27 114
MsG0480018739.01.T01 MTR_7g066290 33.333 279 159 7 1 263 94 361 4.47e-27 112
MsG0480018739.01.T01 MTR_4g019350 51.020 98 32 2 230 326 1 83 1.86e-22 91.7
MsG0480018739.01.T01 MTR_7g066480 32.830 265 153 8 1 254 95 345 2.95e-22 98.6
MsG0480018739.01.T01 MTR_7g066680 29.779 272 161 7 123 386 37 286 1.88e-21 95.1
MsG0480018739.01.T01 MTR_2g029400 25.990 404 197 11 1 395 93 403 7.70e-21 94.4
MsG0480018739.01.T01 MTR_2g029400 34.783 115 65 4 162 268 5 117 1.33e-11 66.2
MsG0480018739.01.T01 MTR_8g445860 29.880 251 134 7 167 401 8 232 7.83e-20 88.6
MsG0480018739.01.T01 MTR_7g063720 30.672 238 125 6 175 408 26 227 7.90e-20 88.6
MsG0480018739.01.T01 MTR_7g066490 30.116 259 154 8 1 254 95 331 1.67e-16 81.3
MsG0480018739.01.T01 MTR_1g014060 34.259 216 103 7 202 413 210 390 1.87e-15 78.2
MsG0480018739.01.T01 MTR_1g115440 28.745 247 149 8 165 401 4 233 7.31e-15 74.3
MsG0480018739.01.T01 MTR_7g100420 28.767 292 165 7 123 403 134 393 1.31e-14 75.5
MsG0480018739.01.T01 MTR_8g023240 26.267 217 138 5 59 260 159 368 1.48e-14 75.9
MsG0480018739.01.T01 MTR_1g115450 42.857 84 46 1 167 248 2 85 7.26e-14 68.9
MsG0480018739.01.T01 MTR_4g019240 63.462 52 19 0 365 416 112 163 1.01e-12 67.0
MsG0480018739.01.T01 MTR_7g063690 33.149 181 95 8 45 222 80 237 2.21e-12 67.0
MsG0480018739.01.T01 MTR_0150s0030 36.667 90 54 2 167 253 3 92 6.81e-12 65.1
MsG0480018739.01.T01 MTR_1g115455 38.095 84 50 1 167 248 4 87 1.30e-11 64.7
MsG0480018739.01.T01 MTR_8g445910 35.556 90 55 1 167 253 3 92 1.97e-11 64.7
MsG0480018739.01.T01 MTR_8g044880 37.647 85 50 1 167 248 3 87 2.88e-11 64.3
MsG0480018739.01.T01 MTR_0150s0010 38.372 86 51 1 165 248 3 88 3.29e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480018739.01.T01 AT5G01120 30.189 424 249 14 1 403 88 485 3.17e-44 161
MsG0480018739.01.T01 AT5G43240 29.147 422 260 9 1 403 88 489 2.45e-43 159
MsG0480018739.01.T01 AT5G43240 29.147 422 260 9 1 403 88 489 2.45e-43 159
MsG0480018739.01.T01 AT5G43240 29.147 422 260 9 1 403 88 489 2.45e-43 159
MsG0480018739.01.T01 AT5G01130 29.639 415 239 11 1 413 88 451 2.70e-43 158
MsG0480018739.01.T01 AT5G01140 30.496 423 248 16 1 413 72 458 5.65e-40 149
MsG0480018739.01.T01 AT5G43240 28.940 349 222 5 63 403 15 345 2.23e-35 134
MsG0480018739.01.T01 AT3G09140 28.959 442 259 15 1 415 88 501 1.94e-34 134
MsG0480018739.01.T01 AT3G09140 28.033 239 160 7 171 400 8 243 1.94e-15 78.6
MsG0480018739.01.T01 AT5G01150 26.835 436 269 10 1 418 88 491 2.02e-32 129
MsG0480018739.01.T01 AT5G37320 28.074 431 248 14 1 408 89 480 1.44e-31 126
MsG0480018739.01.T01 AT3G09140 27.021 470 260 16 1 415 88 529 6.12e-29 119
MsG0480018739.01.T01 AT3G09140 26.360 239 156 8 171 396 8 239 3.01e-12 68.9
MsG0480018739.01.T01 AT3G09110 34.979 243 134 8 2 233 89 318 6.62e-29 116
MsG0480018739.01.T01 AT3G09120 30.962 239 143 7 1 226 84 313 2.82e-23 100
MsG0480018739.01.T01 AT3G09120 25.833 240 154 7 171 401 5 229 1.11e-14 75.1

Find 88 sgRNAs with CRISPR-Local

Find 102 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAGGTGGTGGCTGCATTTC+AGG 0.201101 4:+9201473 None:intergenic
AGGTGGGTTGTCTTTGTTCT+TGG 0.218885 4:+9201823 None:intergenic
TAATAGACAGCCTAAGAATT+TGG 0.219049 4:-9202218 MsG0480018739.01.T01:CDS
AGAAAATGGATCATTGTTTC+TGG 0.236079 4:-9202149 MsG0480018739.01.T01:CDS
CCACCTATTACATATTATTA+TGG 0.255078 4:-9201458 MsG0480018739.01.T01:CDS
CAACGGATCACAAGTTGATA+TGG 0.270644 4:-9201282 MsG0480018739.01.T01:CDS
AAAAGAGTTGTTTCTTGTTT+AGG 0.272026 4:+9200955 None:intergenic
CAAGGGAATAATGTGCAAAA+TGG 0.297637 4:-9202184 MsG0480018739.01.T01:CDS
TAAACAAGAAACAACTCTTT+TGG 0.309535 4:-9200953 MsG0480018739.01.T01:CDS
AACAAGAGAAGTAAAGATAG+AGG 0.310667 4:-9201378 MsG0480018739.01.T01:CDS
GCTTCCTTACGTTGCCATTA+GGG 0.314523 4:-9201661 MsG0480018739.01.T01:CDS
AGCTTCCTTACGTTGCCATT+AGG 0.316633 4:-9201662 MsG0480018739.01.T01:CDS
ACTACTGATGCAAATTGTTT+AGG 0.324278 4:+9201803 None:intergenic
GTAAAGAGAGCAGCATTATA+TGG 0.327171 4:-9201254 MsG0480018739.01.T01:CDS
GGGGTCTTTGTAAGAGAAAA+TGG 0.335839 4:-9202163 MsG0480018739.01.T01:CDS
CACAAGTACAATGAAGGCTT+TGG 0.337032 4:+9202251 None:intergenic
GTACCATAATAATATGTAAT+AGG 0.339119 4:+9201455 None:intergenic
TGCTAGTGACATCAAGAAAA+TGG 0.344789 4:-9201765 MsG0480018739.01.T01:CDS
CTCTCAGAATCCAAATTCTT+AGG 0.349441 4:+9202208 None:intergenic
TTAATTCTTTCAAATATAGA+AGG 0.350593 4:+9201186 None:intergenic
TGTGATCCGTTGAGGGATCT+TGG 0.355842 4:+9201293 None:intergenic
TGGAGAACTTGGACTCTTCT+TGG 0.360912 4:-9201574 MsG0480018739.01.T01:CDS
ATGCAGCTATTGATGGAGTT+GGG 0.367650 4:-9202082 MsG0480018739.01.T01:CDS
AAGGGAATAATGTGCAAAAT+GGG 0.373987 4:-9202183 MsG0480018739.01.T01:CDS
AAGAGATTCACATGGATTCC+TGG 0.380541 4:+9202360 None:intergenic
GACTTCCATGCAGCTATTGA+TGG 0.380984 4:-9202089 MsG0480018739.01.T01:CDS
ATGTAGGCTTTGAGCTTCCT+TGG 0.385161 4:-9201036 MsG0480018739.01.T01:intron
CATGCAGCTATTGATGGAGT+TGG 0.400322 4:-9202083 MsG0480018739.01.T01:CDS
CTTCAAGATCGTCAAGAGAA+AGG 0.418851 4:+9201162 None:intergenic
CAAAGCCTTCATTGTACTTG+TGG 0.419496 4:-9202250 MsG0480018739.01.T01:CDS
TGCAAAATTCTTAACTGCAC+TGG 0.435564 4:-9201318 MsG0480018739.01.T01:CDS
CTATATATAAACTCTTGCTT+TGG 0.439118 4:+9201425 None:intergenic
ATTCTTAGGCTGTCTATTAG+TGG 0.439590 4:+9202222 None:intergenic
GTGATCCGTTGAGGGATCTT+GGG 0.444569 4:+9201294 None:intergenic
GAGAGGCTCATGAGTGGTTA+AGG 0.450763 4:+9201871 None:intergenic
TTTCAGGAATGTTGAGGGGC+TGG 0.452714 4:+9201489 None:intergenic
CTGCATTTCAGGAATGTTGA+GGG 0.452764 4:+9201484 None:intergenic
CTTGTTTAGGCACACTCAAA+AGG 0.455083 4:+9200968 None:intergenic
AAACAATTTGCATCAGTAGT+TGG 0.463064 4:-9201800 MsG0480018739.01.T01:CDS
AGATATACAACGGACCCTAA+TGG 0.465463 4:+9201647 None:intergenic
CGCACTGTGTTACTCAATCC+TGG 0.466642 4:-9201539 MsG0480018739.01.T01:CDS
CCTGGTGTAGCACACCAGTT+TGG 0.470247 4:-9201521 MsG0480018739.01.T01:CDS
GTACAAGAGTGTGGAGAACT+TGG 0.471755 4:-9201585 MsG0480018739.01.T01:CDS
AGAGATTCACATGGATTCCT+GGG 0.474192 4:+9202361 None:intergenic
GCTGCATTTCAGGAATGTTG+AGG 0.478547 4:+9201483 None:intergenic
ATTACATATTATTATGGTAC+AGG 0.484988 4:-9201452 MsG0480018739.01.T01:CDS
AGAGCAGCATTATATGGTAT+AGG 0.490389 4:-9201248 MsG0480018739.01.T01:CDS
GCTGGTTTCGACAACCAAAC+TGG 0.492728 4:+9201507 None:intergenic
GAAGTCAACAAAATCTCCAT+TGG 0.498206 4:+9201691 None:intergenic
AGGAAAGAATTAGCAGAGAG+TGG 0.503286 4:+9201206 None:intergenic
TGGTTAAGGTATACTTGAGA+AGG 0.505091 4:+9201885 None:intergenic
ATTTGGATTCTGAGAGTCAA+GGG 0.509310 4:-9202201 MsG0480018739.01.T01:CDS
CATTTCCACAAGTACAATGA+AGG 0.512998 4:+9202245 None:intergenic
AACGGATCACAAGTTGATAT+GGG 0.520381 4:-9201281 MsG0480018739.01.T01:CDS
TTCAGACTTGAGTCAAATAG+AGG 0.522314 4:-9202056 MsG0480018739.01.T01:CDS
ATGGAAGTCACAGAGGAACT+TGG 0.523683 4:+9202103 None:intergenic
ATCAACTTGTGATCCGTTGA+GGG 0.526068 4:+9201286 None:intergenic
ACTGATGCAAATTGTTTAGG+TGG 0.527267 4:+9201806 None:intergenic
GACAAATGTTGCTGAATCCC+AGG 0.531445 4:-9202378 None:intergenic
TCAAGATTTACCTTGACTAG+TGG 0.544138 4:-9201000 MsG0480018739.01.T01:CDS
TAATAATATGTAATAGGTGG+TGG 0.544263 4:+9201461 None:intergenic
ACAAGAGAAGTAAAGATAGA+GGG 0.556606 4:-9201377 MsG0480018739.01.T01:CDS
CCAAACTGGTGTGCTACACC+AGG 0.558658 4:+9201521 None:intergenic
TCTTGACGATCTTGAAGCGA+AGG 0.567610 4:-9201156 MsG0480018739.01.T01:CDS
GTCTTTAAGTCCACTAGTCA+AGG 0.577600 4:+9200990 None:intergenic
ATAATCTATGCAGAAACCAA+TGG 0.584613 4:-9201707 MsG0480018739.01.T01:CDS
TGCAGCTATTGATGGAGTTG+GGG 0.588028 4:-9202081 MsG0480018739.01.T01:CDS
AGAGAAGTAAAGATAGAGGG+AGG 0.592777 4:-9201374 MsG0480018739.01.T01:CDS
TATCAACTTGTGATCCGTTG+AGG 0.597413 4:+9201285 None:intergenic
CTGATGCAAATTGTTTAGGT+GGG 0.606995 4:+9201807 None:intergenic
GAAGCGAAGGTGATGAGCAT+CGG 0.608043 4:-9201143 MsG0480018739.01.T01:CDS
TGCATTTCAGGAATGTTGAG+GGG 0.616015 4:+9201485 None:intergenic
CGGACCCTAATGGCAACGTA+AGG 0.619939 4:+9201657 None:intergenic
CCATAATAATATGTAATAGG+TGG 0.620194 4:+9201458 None:intergenic
GAGGAAGTCACACACAACAT+TGG 0.621785 4:-9202037 MsG0480018739.01.T01:CDS
GATGAGCATCGGTGAAGCTG+AGG 0.627852 4:-9201132 MsG0480018739.01.T01:intron
CAACTCCATCAATAGCTGCA+TGG 0.633622 4:+9202084 None:intergenic
AATTTGGATTCTGAGAGTCA+AGG 0.634280 4:-9202202 MsG0480018739.01.T01:CDS
AGCTCCTAAAAGATATACAA+CGG 0.650293 4:+9201637 None:intergenic
AGGGAATAATGTGCAAAATG+GGG 0.655969 4:-9202182 MsG0480018739.01.T01:CDS
ACACAACATTGGCAAACATG+AGG 0.658626 4:-9202026 MsG0480018739.01.T01:intron
TTGATGTCAAGAATGCTCCA+AGG 0.669048 4:+9201019 None:intergenic
TGGTAATTTGTACAAGAGTG+TGG 0.696549 4:-9201594 MsG0480018739.01.T01:CDS
TTCACGCAAAGAGATTCACA+TGG 0.698194 4:+9202352 None:intergenic
GGAGTGATTTCTAAGTCACA+CGG 0.701071 4:-9201353 MsG0480018739.01.T01:CDS
CTGGACCCAAGATCCCTCAA+CGG 0.709275 4:-9201299 MsG0480018739.01.T01:CDS
TAGCTGCATGGAAGTCACAG+AGG 0.730672 4:+9202096 None:intergenic
ATTTGTGAGAGGCTCATGAG+TGG 0.743443 4:+9201865 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAATGTTAAATCGTAAA+TGG + Chr4:9201368-9201387 None:intergenic 15.0%
!! TTAATTCTTTCAAATATAGA+AGG + Chr4:9202102-9202121 None:intergenic 15.0%
!! ATTACATATTATTATGGTAC+AGG - Chr4:9201833-9201852 MsG0480018739.01.T01:CDS 20.0%
!! GTACCATAATAATATGTAAT+AGG + Chr4:9201833-9201852 None:intergenic 20.0%
!!! AAAAAACTTATTTGATGGTT+CGG + Chr4:9200982-9201001 None:intergenic 20.0%
!!! AACATAAAAAAAGTTGATTC+TGG + Chr4:9202369-9202388 None:intergenic 20.0%
! AAAGCCTACATAACAATTAA+AGG + Chr4:9202240-9202259 None:intergenic 25.0%
! AAGCCTACATAACAATTAAA+GGG + Chr4:9202239-9202258 None:intergenic 25.0%
! ACTGTTAAATAAAGACTGAT+AGG + Chr4:9201337-9201356 None:intergenic 25.0%
! ATTCCCTTTAATTGTTATGT+AGG - Chr4:9202233-9202252 MsG0480018739.01.T01:CDS 25.0%
! CACACAAAAAACTTATTTGA+TGG + Chr4:9200987-9201006 None:intergenic 25.0%
! CCACCTATTACATATTATTA+TGG - Chr4:9201827-9201846 MsG0480018739.01.T01:CDS 25.0%
! CCATAATAATATGTAATAGG+TGG + Chr4:9201830-9201849 None:intergenic 25.0%
! CTATATATAAACTCTTGCTT+TGG + Chr4:9201863-9201882 None:intergenic 25.0%
! TAATAATATGTAATAGGTGG+TGG + Chr4:9201827-9201846 None:intergenic 25.0%
!! TAAACAAGAAACAACTCTTT+TGG - Chr4:9202332-9202351 MsG0480018739.01.T01:CDS 25.0%
!!! AAAAAAGTTGATTCTGGTTT+AGG + Chr4:9202363-9202382 None:intergenic 25.0%
!!! AAAAGAGTTGTTTCTTGTTT+AGG + Chr4:9202333-9202352 None:intergenic 25.0%
AAACAATTTGCATCAGTAGT+TGG - Chr4:9201485-9201504 MsG0480018739.01.T01:CDS 30.0%
AACAAGAGAAGTAAAGATAG+AGG - Chr4:9201907-9201926 MsG0480018739.01.T01:intron 30.0%
AAGGGAATAATGTGCAAAAT+GGG - Chr4:9201102-9201121 MsG0480018739.01.T01:intron 30.0%
ACAAGAGAAGTAAAGATAGA+GGG - Chr4:9201908-9201927 MsG0480018739.01.T01:intron 30.0%
ACAATTAAAGGGAATCAAAG+CGG + Chr4:9202228-9202247 None:intergenic 30.0%
ACTACTGATGCAAATTGTTT+AGG + Chr4:9201485-9201504 None:intergenic 30.0%
AGAAAATGGATCATTGTTTC+TGG - Chr4:9201136-9201155 MsG0480018739.01.T01:CDS 30.0%
AGCTCCTAAAAGATATACAA+CGG + Chr4:9201651-9201670 None:intergenic 30.0%
ATAATCTATGCAGAAACCAA+TGG - Chr4:9201578-9201597 MsG0480018739.01.T01:CDS 30.0%
TAATAGACAGCCTAAGAATT+TGG - Chr4:9201067-9201086 MsG0480018739.01.T01:intron 30.0%
TCCAAAAATGTATTTGTGAG+AGG + Chr4:9201434-9201453 None:intergenic 30.0%
! TTAGGAGCTAATAATTTTGC+TGG - Chr4:9201662-9201681 MsG0480018739.01.T01:CDS 30.0%
ACTGATGCAAATTGTTTAGG+TGG + Chr4:9201482-9201501 None:intergenic 35.0%
AGAGCAGCATTATATGGTAT+AGG - Chr4:9202037-9202056 MsG0480018739.01.T01:CDS 35.0%
AGGGAATAATGTGCAAAATG+GGG - Chr4:9201103-9201122 MsG0480018739.01.T01:intron 35.0%
ATTCTTAGGCTGTCTATTAG+TGG + Chr4:9201066-9201085 None:intergenic 35.0%
CAAGGGAATAATGTGCAAAA+TGG - Chr4:9201101-9201120 MsG0480018739.01.T01:intron 35.0%
CATTTCCACAAGTACAATGA+AGG + Chr4:9201043-9201062 None:intergenic 35.0%
CTCTCAGAATCCAAATTCTT+AGG + Chr4:9201080-9201099 None:intergenic 35.0%
CTGATGCAAATTGTTTAGGT+GGG + Chr4:9201481-9201500 None:intergenic 35.0%
GAAGTCAACAAAATCTCCAT+TGG + Chr4:9201597-9201616 None:intergenic 35.0%
GTAAAGAGAGCAGCATTATA+TGG - Chr4:9202031-9202050 MsG0480018739.01.T01:CDS 35.0%
TCAAGATTTACCTTGACTAG+TGG - Chr4:9202285-9202304 MsG0480018739.01.T01:CDS 35.0%
TGCAAAATTCTTAACTGCAC+TGG - Chr4:9201967-9201986 MsG0480018739.01.T01:intron 35.0%
TGCTAGTGACATCAAGAAAA+TGG - Chr4:9201520-9201539 MsG0480018739.01.T01:CDS 35.0%
TGGTTAAGGTATACTTGAGA+AGG + Chr4:9201403-9201422 None:intergenic 35.0%
TTCAGACTTGAGTCAAATAG+AGG - Chr4:9201229-9201248 MsG0480018739.01.T01:CDS 35.0%
! AATAATTTTGCTGGATGTGC+TGG - Chr4:9201671-9201690 MsG0480018739.01.T01:CDS 35.0%
! AATTTGGATTCTGAGAGTCA+AGG - Chr4:9201083-9201102 MsG0480018739.01.T01:intron 35.0%
! ATTTGGATTCTGAGAGTCAA+GGG - Chr4:9201084-9201103 MsG0480018739.01.T01:intron 35.0%
! GCCTCTCACAAATACATTTT+TGG - Chr4:9201430-9201449 MsG0480018739.01.T01:CDS 35.0%
! TGGTAATTTGTACAAGAGTG+TGG - Chr4:9201691-9201710 MsG0480018739.01.T01:CDS 35.0%
!! AACGGATCACAAGTTGATAT+GGG - Chr4:9202004-9202023 MsG0480018739.01.T01:intron 35.0%
AAGAGATTCACATGGATTCC+TGG + Chr4:9200928-9200947 None:intergenic 40.0%
ACACAACATTGGCAAACATG+AGG - Chr4:9201259-9201278 MsG0480018739.01.T01:CDS 40.0%
AGAGAAGTAAAGATAGAGGG+AGG - Chr4:9201911-9201930 MsG0480018739.01.T01:intron 40.0%
AGAGATTCACATGGATTCCT+GGG + Chr4:9200927-9200946 None:intergenic 40.0%
AGATATACAACGGACCCTAA+TGG + Chr4:9201641-9201660 None:intergenic 40.0%
AGGAAAGAATTAGCAGAGAG+TGG + Chr4:9202082-9202101 None:intergenic 40.0%
ATCAACTTGTGATCCGTTGA+GGG + Chr4:9202002-9202021 None:intergenic 40.0%
ATGCAGCTATTGATGGAGTT+GGG - Chr4:9201203-9201222 MsG0480018739.01.T01:CDS 40.0%
CAAAGCCTTCATTGTACTTG+TGG - Chr4:9201035-9201054 MsG0480018739.01.T01:intron 40.0%
CACAAGTACAATGAAGGCTT+TGG + Chr4:9201037-9201056 None:intergenic 40.0%
CTGCATTTCAGGAATGTTGA+GGG + Chr4:9201804-9201823 None:intergenic 40.0%
CTTCAAGATCGTCAAGAGAA+AGG + Chr4:9202126-9202145 None:intergenic 40.0%
CTTGTTTAGGCACACTCAAA+AGG + Chr4:9202320-9202339 None:intergenic 40.0%
GGAGTGATTTCTAAGTCACA+CGG - Chr4:9201932-9201951 MsG0480018739.01.T01:intron 40.0%
GGGGTCTTTGTAAGAGAAAA+TGG - Chr4:9201122-9201141 MsG0480018739.01.T01:intron 40.0%
GTCTTTAAGTCCACTAGTCA+AGG + Chr4:9202298-9202317 None:intergenic 40.0%
TATCAACTTGTGATCCGTTG+AGG + Chr4:9202003-9202022 None:intergenic 40.0%
TGCATTTCAGGAATGTTGAG+GGG + Chr4:9201803-9201822 None:intergenic 40.0%
TTCACGCAAAGAGATTCACA+TGG + Chr4:9200936-9200955 None:intergenic 40.0%
TTGATGTCAAGAATGCTCCA+AGG + Chr4:9202269-9202288 None:intergenic 40.0%
! GGGTCCGTTGTATATCTTTT+AGG - Chr4:9201644-9201663 MsG0480018739.01.T01:CDS 40.0%
!! CAACGGATCACAAGTTGATA+TGG - Chr4:9202003-9202022 MsG0480018739.01.T01:intron 40.0%
AGCTTCCTTACGTTGCCATT+AGG - Chr4:9201623-9201642 MsG0480018739.01.T01:CDS 45.0%
ATGGAAGTCACAGAGGAACT+TGG + Chr4:9201185-9201204 None:intergenic 45.0%
ATTTGTGAGAGGCTCATGAG+TGG + Chr4:9201423-9201442 None:intergenic 45.0%
CAACTCCATCAATAGCTGCA+TGG + Chr4:9201204-9201223 None:intergenic 45.0%
CATGCAGCTATTGATGGAGT+TGG - Chr4:9201202-9201221 MsG0480018739.01.T01:CDS 45.0%
GACTTCCATGCAGCTATTGA+TGG - Chr4:9201196-9201215 MsG0480018739.01.T01:CDS 45.0%
GAGGAAGTCACACACAACAT+TGG - Chr4:9201248-9201267 MsG0480018739.01.T01:CDS 45.0%
GCTGCATTTCAGGAATGTTG+AGG + Chr4:9201805-9201824 None:intergenic 45.0%
GCTTCCTTACGTTGCCATTA+GGG - Chr4:9201624-9201643 MsG0480018739.01.T01:CDS 45.0%
TCTTGACGATCTTGAAGCGA+AGG - Chr4:9202129-9202148 MsG0480018739.01.T01:CDS 45.0%
TGCAGCTATTGATGGAGTTG+GGG - Chr4:9201204-9201223 MsG0480018739.01.T01:CDS 45.0%
TGGAGAACTTGGACTCTTCT+TGG - Chr4:9201711-9201730 MsG0480018739.01.T01:CDS 45.0%
! GTACAAGAGTGTGGAGAACT+TGG - Chr4:9201700-9201719 MsG0480018739.01.T01:CDS 45.0%
!! AGGTGGGTTGTCTTTGTTCT+TGG + Chr4:9201465-9201484 None:intergenic 45.0%
!! ATGTAGGCTTTGAGCTTCCT+TGG - Chr4:9202249-9202268 MsG0480018739.01.T01:CDS 45.0%
GAAGCGAAGGTGATGAGCAT+CGG - Chr4:9202142-9202161 MsG0480018739.01.T01:CDS 50.0%
GAGAGGCTCATGAGTGGTTA+AGG + Chr4:9201417-9201436 None:intergenic 50.0%
GTGATCCGTTGAGGGATCTT+GGG + Chr4:9201994-9202013 None:intergenic 50.0%
TAGCTGCATGGAAGTCACAG+AGG + Chr4:9201192-9201211 None:intergenic 50.0%
TGTGATCCGTTGAGGGATCT+TGG + Chr4:9201995-9202014 None:intergenic 50.0%
TTTCAGGAATGTTGAGGGGC+TGG + Chr4:9201799-9201818 None:intergenic 50.0%
! ATAGGTGGTGGCTGCATTTC+AGG + Chr4:9201815-9201834 None:intergenic 50.0%
! CGCACTGTGTTACTCAATCC+TGG - Chr4:9201746-9201765 MsG0480018739.01.T01:CDS 50.0%
! GCTGGTTTCGACAACCAAAC+TGG + Chr4:9201781-9201800 None:intergenic 50.0%
CCAAACTGGTGTGCTACACC+AGG + Chr4:9201767-9201786 None:intergenic 55.0%
CCTGGTGTAGCACACCAGTT+TGG - Chr4:9201764-9201783 MsG0480018739.01.T01:CDS 55.0%
CGGACCCTAATGGCAACGTA+AGG + Chr4:9201631-9201650 None:intergenic 55.0%
CTGGACCCAAGATCCCTCAA+CGG - Chr4:9201986-9202005 MsG0480018739.01.T01:intron 55.0%
!! GATGAGCATCGGTGAAGCTG+AGG - Chr4:9202153-9202172 MsG0480018739.01.T01:CDS 55.0%
Chromosome Type Strat End Strand Name
Chr4 gene 9200912 9202395 9200912 ID=MsG0480018739.01;Name=MsG0480018739.01
Chr4 mRNA 9200912 9202395 9200912 ID=MsG0480018739.01.T01;Parent=MsG0480018739.01;Name=MsG0480018739.01.T01;_AED=0.13;_eAED=0.13;_QI=0|0|0|1|1|1|3|0|430
Chr4 exon 9202027 9202395 9202027 ID=MsG0480018739.01.T01:exon:2930;Parent=MsG0480018739.01.T01
Chr4 exon 9201133 9201915 9201133 ID=MsG0480018739.01.T01:exon:2929;Parent=MsG0480018739.01.T01
Chr4 exon 9200912 9201052 9200912 ID=MsG0480018739.01.T01:exon:2928;Parent=MsG0480018739.01.T01
Chr4 CDS 9202027 9202395 9202027 ID=MsG0480018739.01.T01:cds;Parent=MsG0480018739.01.T01
Chr4 CDS 9201133 9201915 9201133 ID=MsG0480018739.01.T01:cds;Parent=MsG0480018739.01.T01
Chr4 CDS 9200912 9201052 9200912 ID=MsG0480018739.01.T01:cds;Parent=MsG0480018739.01.T01
Gene Sequence

>MsG0480018739.01.T01

ATGTTGCTGAATCCCAGGAATCCATGTGAATCTCTTTGCGTGAAGCTGTTCTTGAATATTGATGACACCGAACCATCAAATAAGTTTTTTGTGTGTGATTGTTGTAACACGTTTACTACTTTCCAAAGCCTTCATTGTACTTGTGGAAATGCCACTAATAGACAGCCTAAGAATTTGGATTCTGAGAGTCAAGGGAATAATGTGCAAAATGGGGTCTTTGTAAGAGAAAATGGATCATTGTTTCTGGTGTCTGATGATTTGAAGATTGTGCCAAGTTCCTCTGTGACTTCCATGCAGCTATTGATGGAGTTGGGGTATTCAGACTTGAGTCAAATAGAGGAAGTCACACACAACATTGGCAAACATGAGATATTAAACCTTCTCAAGTATACCTTAACCACTCATGAGCCTCTCACAAATACATTTTTGGAAAGTAGCTCCAAGAACAAAGACAACCCACCTAAACAATTTGCATCAGTAGTTGGAGTAAAGTCTTGTGCTAGTGACATCAAGAAAATGGATGTTAAAGTAATTCAAAGTAAATCTCAGAAAAATATAATCTATGCAGAAACCAATGGAGATTTTGTTGACTTCATTTTTAGCTTCCTTACGTTGCCATTAGGGTCCGTTGTATATCTTTTAGGAGCTAATAATTTTGCTGGATGTGCTGGTAATTTGTACAAGAGTGTGGAGAACTTGGACTCTTCTTGGTGTACTGACTCACGCACTGTGTTACTCAATCCTGGTGTAGCACACCAGTTTGGTTGTCGAAACCAGCCCCTCAACATTCCTGAAATGCAGCCACCACCTATTACATATTATTATGGTACAGGAACACCAAAGCAAGAGTTTATATATAGTTATCATAGACGTGATTATTATGAAACAAGAGAAGTAAAGATAGAGGGAGGAGTGATTTCTAAGTCACACGGATCAATTTATAATGCAAAATTCTTAACTGCACTGGACCCAAGATCCCTCAACGGATCACAAGTTGATATGGGATTTGTAAAGAGAGCAGCATTATATGGTATAGGAAATGATCTAAGAGTAAAACCACTCTCTGCTAATTCTTTCCTTCTATATTTGAAAGAATTAAACCTTTCTCTTGACGATCTTGAAGCGAAGGTGATGAGCATCGGTGAAGCTGAGGCTTTGAGCTTCCTTGGAGCATTCTTGACATCAAGATTTACCTTGACTAGTGGACTTAAAGACCTTTTGAGTGTGCCTAAACAAGAAACAACTCTTTTGGATGTTCCTAAACCAGAATCAACTTTTTTTATGTTAATTTGA
Protein sequence

>MsG0480018739.01.T01

MLLNPRNPCESLCVKLFLNIDDTEPSNKFFVCDCCNTFTTFQSLHCTCGNATNRQPKNLDSESQGNNVQNGVFVRENGSLFLVSDDLKIVPSSSVTSMQLLMELGYSDLSQIEEVTHNIGKHEILNLLKYTLTTHEPLTNTFLESSSKNKDNPPKQFASVVGVKSCASDIKKMDVKVIQSKSQKNIIYAETNGDFVDFIFSFLTLPLGSVVYLLGANNFAGCAGNLYKSVENLDSSWCTDSRTVLLNPGVAHQFGCRNQPLNIPEMQPPPITYYYGTGTPKQEFIYSYHRRDYYETREVKIEGGVISKSHGSIYNAKFLTALDPRSLNGSQVDMGFVKRAALYGIGNDLRVKPLSANSFLLYLKELNLSLDDLEAKVMSIGEAEALSFLGAFLTSRFTLTSGLKDLLSVPKQETTLLDVPKPESTFFMLI*