Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480018744.01.T01 | XP_003604756.1 | 85.526 | 304 | 37 | 2 | 1 | 303 | 1 | 298 | 1.81E-169 | 490 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480018744.01.T01 | G7JQ77 | 85.526 | 304 | 37 | 2 | 1 | 303 | 1 | 298 | 8.66e-170 | 490 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480018744.01.T01 | MTR_4g017440 | 85.526 | 304 | 37 | 2 | 1 | 303 | 1 | 298 | 2.20e-173 | 490 |
| MsG0480018744.01.T01 | MTR_4g017410 | 73.826 | 298 | 75 | 2 | 8 | 304 | 3 | 298 | 1.60e-155 | 444 |
| MsG0480018744.01.T01 | MTR_4g017830 | 66.443 | 298 | 88 | 5 | 8 | 304 | 6 | 292 | 2.93e-132 | 386 |
| MsG0480018744.01.T01 | MTR_4g019340 | 68.367 | 294 | 89 | 4 | 13 | 304 | 37 | 328 | 4.60e-128 | 375 |
| MsG0480018744.01.T01 | MTR_4g019340 | 31.111 | 225 | 126 | 6 | 17 | 241 | 306 | 501 | 2.34e-14 | 73.6 |
| MsG0480018744.01.T01 | MTR_4g017610 | 60.133 | 301 | 109 | 4 | 5 | 304 | 4 | 294 | 5.66e-118 | 348 |
| MsG0480018744.01.T01 | MTR_4g017550 | 61.702 | 282 | 91 | 6 | 28 | 304 | 3 | 272 | 6.37e-111 | 330 |
| MsG0480018744.01.T01 | MTR_4g017550 | 28.175 | 252 | 130 | 10 | 17 | 249 | 250 | 469 | 3.91e-11 | 63.9 |
| MsG0480018744.01.T01 | MTR_4g017470 | 59.539 | 304 | 78 | 4 | 1 | 304 | 1 | 259 | 1.29e-104 | 314 |
| MsG0480018744.01.T01 | MTR_4g019310 | 38.851 | 296 | 162 | 8 | 15 | 304 | 9 | 291 | 5.03e-56 | 189 |
| MsG0480018744.01.T01 | MTR_7g066340 | 35.065 | 308 | 166 | 8 | 7 | 304 | 5 | 288 | 3.84e-50 | 173 |
| MsG0480018744.01.T01 | MTR_7g066260 | 37.061 | 313 | 154 | 11 | 8 | 304 | 9 | 294 | 1.13e-48 | 169 |
| MsG0480018744.01.T01 | MTR_7g066350 | 36.601 | 306 | 159 | 9 | 10 | 304 | 5 | 286 | 6.71e-47 | 164 |
| MsG0480018744.01.T01 | MTR_7g066290 | 37.908 | 306 | 159 | 7 | 8 | 304 | 9 | 292 | 1.05e-44 | 157 |
| MsG0480018744.01.T01 | MTR_7g066570 | 36.076 | 316 | 156 | 12 | 1 | 304 | 1 | 282 | 1.78e-43 | 157 |
| MsG0480018744.01.T01 | MTR_7g066570 | 26.144 | 306 | 165 | 10 | 10 | 282 | 253 | 530 | 2.32e-15 | 76.6 |
| MsG0480018744.01.T01 | MTR_7g058710 | 33.333 | 303 | 152 | 9 | 15 | 304 | 13 | 278 | 1.54e-42 | 153 |
| MsG0480018744.01.T01 | MTR_4g019240 | 60.156 | 128 | 44 | 4 | 1 | 128 | 1 | 121 | 9.58e-42 | 143 |
| MsG0480018744.01.T01 | MTR_1g041315 | 33.750 | 320 | 161 | 11 | 10 | 304 | 10 | 303 | 1.35e-40 | 147 |
| MsG0480018744.01.T01 | MTR_7g012680 | 34.824 | 313 | 150 | 10 | 1 | 304 | 1 | 268 | 1.83e-39 | 144 |
| MsG0480018744.01.T01 | MTR_7g063900 | 34.000 | 300 | 159 | 9 | 13 | 304 | 9 | 277 | 5.76e-39 | 143 |
| MsG0480018744.01.T01 | MTR_7g063660 | 35.786 | 299 | 150 | 14 | 15 | 304 | 10 | 275 | 1.61e-38 | 142 |
| MsG0480018744.01.T01 | MTR_7g063660 | 27.897 | 233 | 148 | 4 | 15 | 246 | 251 | 464 | 3.39e-16 | 79.3 |
| MsG0480018744.01.T01 | MTR_7g066360 | 34.286 | 315 | 173 | 10 | 1 | 304 | 1 | 292 | 5.65e-37 | 138 |
| MsG0480018744.01.T01 | MTR_7g063890 | 32.686 | 309 | 168 | 9 | 4 | 304 | 17 | 293 | 9.25e-37 | 137 |
| MsG0480018744.01.T01 | MTR_2g029400 | 34.766 | 256 | 103 | 5 | 1 | 256 | 1 | 192 | 1.70e-34 | 130 |
| MsG0480018744.01.T01 | MTR_7g063880 | 31.544 | 298 | 158 | 8 | 15 | 304 | 12 | 271 | 8.57e-34 | 129 |
| MsG0480018744.01.T01 | MTR_7g066410 | 31.579 | 323 | 164 | 11 | 15 | 304 | 11 | 309 | 1.26e-33 | 129 |
| MsG0480018744.01.T01 | MTR_7g066410 | 25.781 | 256 | 163 | 5 | 2 | 249 | 272 | 508 | 1.16e-12 | 68.6 |
| MsG0480018744.01.T01 | MTR_7g063830 | 31.731 | 312 | 166 | 12 | 6 | 304 | 2 | 279 | 1.51e-33 | 128 |
| MsG0480018744.01.T01 | MTR_7g066430 | 32.441 | 299 | 172 | 10 | 15 | 304 | 5 | 282 | 6.93e-33 | 127 |
| MsG0480018744.01.T01 | MTR_7g066400 | 32.226 | 301 | 145 | 12 | 15 | 304 | 13 | 265 | 7.71e-32 | 123 |
| MsG0480018744.01.T01 | MTR_7g066580 | 32.542 | 295 | 134 | 12 | 20 | 304 | 1 | 240 | 2.95e-31 | 122 |
| MsG0480018744.01.T01 | MTR_7g066580 | 28.854 | 253 | 149 | 9 | 8 | 249 | 209 | 441 | 1.71e-12 | 67.8 |
| MsG0480018744.01.T01 | MTR_7g066480 | 33.667 | 300 | 161 | 8 | 15 | 304 | 17 | 288 | 3.21e-30 | 119 |
| MsG0480018744.01.T01 | MTR_7g063840 | 30.719 | 306 | 173 | 10 | 6 | 304 | 2 | 275 | 6.39e-30 | 118 |
| MsG0480018744.01.T01 | MTR_7g058700 | 31.818 | 330 | 129 | 14 | 11 | 304 | 508 | 777 | 9.16e-29 | 116 |
| MsG0480018744.01.T01 | MTR_7g062300 | 30.449 | 312 | 176 | 9 | 3 | 304 | 1 | 281 | 1.08e-28 | 115 |
| MsG0480018744.01.T01 | MTR_7g062280 | 30.128 | 312 | 165 | 9 | 15 | 304 | 11 | 291 | 1.68e-28 | 114 |
| MsG0480018744.01.T01 | MTR_7g062280 | 26.800 | 250 | 149 | 7 | 15 | 257 | 267 | 489 | 3.37e-13 | 70.1 |
| MsG0480018744.01.T01 | MTR_7g063820 | 32.166 | 314 | 162 | 13 | 6 | 304 | 2 | 279 | 3.23e-28 | 114 |
| MsG0480018744.01.T01 | MTR_1g014060 | 33.191 | 235 | 125 | 5 | 23 | 249 | 9 | 219 | 3.63e-28 | 112 |
| MsG0480018744.01.T01 | MTR_3g007740 | 29.260 | 311 | 171 | 8 | 1 | 304 | 1 | 269 | 4.00e-25 | 104 |
| MsG0480018744.01.T01 | MTR_7g066490 | 31.293 | 294 | 162 | 7 | 15 | 304 | 17 | 274 | 6.26e-25 | 103 |
| MsG0480018744.01.T01 | MTR_3g065200 | 31.416 | 226 | 119 | 6 | 15 | 236 | 4 | 197 | 5.42e-24 | 101 |
| MsG0480018744.01.T01 | MTR_7g066310 | 36.709 | 158 | 77 | 5 | 15 | 163 | 8 | 151 | 1.34e-22 | 97.4 |
| MsG0480018744.01.T01 | MTR_7g063920 | 29.795 | 292 | 142 | 8 | 15 | 304 | 12 | 242 | 1.47e-22 | 97.4 |
| MsG0480018744.01.T01 | MTR_7g063920 | 27.160 | 243 | 151 | 6 | 15 | 257 | 218 | 434 | 2.42e-15 | 76.6 |
| MsG0480018744.01.T01 | MTR_7g062270 | 35.294 | 204 | 93 | 7 | 6 | 198 | 2 | 177 | 1.93e-21 | 94.0 |
| MsG0480018744.01.T01 | MTR_7g063670 | 29.430 | 316 | 169 | 12 | 1 | 304 | 4 | 277 | 1.61e-19 | 89.0 |
| MsG0480018744.01.T01 | MTR_8g445860 | 28.627 | 255 | 148 | 7 | 7 | 251 | 6 | 236 | 2.32e-18 | 82.8 |
| MsG0480018744.01.T01 | MTR_1g115440 | 26.423 | 246 | 152 | 7 | 15 | 251 | 12 | 237 | 2.77e-16 | 77.0 |
| MsG0480018744.01.T01 | MTR_0150s0010 | 24.409 | 254 | 161 | 4 | 8 | 251 | 4 | 236 | 3.42e-14 | 71.2 |
| MsG0480018744.01.T01 | MTR_6g006800 | 70.732 | 41 | 12 | 0 | 9 | 49 | 6 | 46 | 3.68e-12 | 61.2 |
| MsG0480018744.01.T01 | MTR_7g066280 | 26.794 | 209 | 110 | 6 | 105 | 304 | 1 | 175 | 6.39e-12 | 66.2 |
| MsG0480018744.01.T01 | MTR_7g063720 | 25.322 | 233 | 138 | 5 | 17 | 249 | 26 | 222 | 1.69e-11 | 63.5 |
| MsG0480018744.01.T01 | MTR_7g100420 | 65.116 | 43 | 15 | 0 | 14 | 56 | 39 | 81 | 4.53e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480018744.01.T01 | AT5G43240 | 33.987 | 306 | 164 | 9 | 15 | 304 | 10 | 293 | 2.21e-39 | 145 |
| MsG0480018744.01.T01 | AT5G43240 | 33.987 | 306 | 164 | 9 | 15 | 304 | 10 | 293 | 2.21e-39 | 145 |
| MsG0480018744.01.T01 | AT5G43240 | 33.987 | 306 | 164 | 9 | 15 | 304 | 10 | 293 | 2.21e-39 | 145 |
| MsG0480018744.01.T01 | AT5G01120 | 33.333 | 309 | 169 | 10 | 11 | 304 | 6 | 292 | 1.12e-35 | 135 |
| MsG0480018744.01.T01 | AT3G09120 | 31.561 | 301 | 180 | 8 | 11 | 304 | 3 | 284 | 6.85e-35 | 129 |
| MsG0480018744.01.T01 | AT3G09140 | 33.856 | 319 | 165 | 12 | 11 | 304 | 6 | 303 | 8.83e-35 | 132 |
| MsG0480018744.01.T01 | AT3G09110 | 30.592 | 304 | 174 | 9 | 11 | 304 | 6 | 282 | 6.66e-34 | 127 |
| MsG0480018744.01.T01 | AT5G01130 | 34.202 | 307 | 159 | 14 | 8 | 304 | 4 | 277 | 1.68e-33 | 128 |
| MsG0480018744.01.T01 | AT5G01150 | 31.715 | 309 | 179 | 9 | 6 | 304 | 2 | 288 | 3.09e-31 | 122 |
| MsG0480018744.01.T01 | AT3G09140 | 31.124 | 347 | 165 | 13 | 11 | 304 | 6 | 331 | 8.92e-30 | 118 |
| MsG0480018744.01.T01 | AT5G37320 | 32.166 | 314 | 175 | 14 | 9 | 304 | 3 | 296 | 3.28e-26 | 108 |
| MsG0480018744.01.T01 | AT5G01140 | 29.773 | 309 | 141 | 14 | 17 | 304 | 12 | 265 | 4.57e-22 | 96.3 |
| MsG0480018744.01.T01 | AT5G01140 | 27.734 | 256 | 147 | 10 | 7 | 255 | 233 | 457 | 3.79e-11 | 63.9 |
| MsG0480018744.01.T01 | AT5G43240 | 32.895 | 152 | 84 | 3 | 162 | 304 | 7 | 149 | 3.78e-14 | 72.8 |
Find 66 sgRNAs with CRISPR-Local
Find 105 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACAAAGAGACCTCGGAATT+TGG | 0.201783 | 4:+9314404 | MsG0480018744.01.T01:CDS |
| CTTGCGCCTGTTGAAGGAAT+TGG | 0.237644 | 4:+9314551 | MsG0480018744.01.T01:CDS |
| CACAAGTGGCGGCACTAAAA+TGG | 0.259934 | 4:+9315462 | MsG0480018744.01.T01:CDS |
| GAGGTCTTTCTTAGAGAAAA+TGG | 0.295488 | 4:+9314471 | MsG0480018744.01.T01:CDS |
| GAGGAAATCACACACAAAAT+TGG | 0.310252 | 4:+9314597 | MsG0480018744.01.T01:CDS |
| TATTGTTGTTGGTGGATAAA+AGG | 0.312452 | 4:-9314101 | None:intergenic |
| TTGGTCATTGTTATTGTTGT+TGG | 0.315225 | 4:-9314112 | None:intergenic |
| TTCAAAATTGTATTTGTCAT+AGG | 0.343608 | 4:-9315373 | None:intergenic |
| CTCTAACGGCTGATGAAGAT+TGG | 0.361391 | 4:-9315429 | None:intergenic |
| GTCATTGTTATTGTTGTTGG+TGG | 0.381237 | 4:-9314109 | None:intergenic |
| GAATTTGGATTCTGAGGGTC+AGG | 0.388921 | 4:+9314419 | MsG0480018744.01.T01:CDS |
| GACTACCTTGCGCCTGTTGA+AGG | 0.390286 | 4:+9314545 | MsG0480018744.01.T01:CDS |
| ACATAACCTCAAATGATGTT+TGG | 0.402019 | 4:+9314208 | MsG0480018744.01.T01:CDS |
| AGAGTTGTTGATGTTGTTGT+TGG | 0.404949 | 4:-9314131 | None:intergenic |
| AAATTCCGAGGTCTCTTTGT+TGG | 0.406662 | 4:-9314402 | None:intergenic |
| TTGCGCCTGTTGAAGGAATT+GGG | 0.408613 | 4:+9314552 | MsG0480018744.01.T01:CDS |
| AACCATTCCCGTCAAAATCT+TGG | 0.416805 | 4:+9313978 | MsG0480018744.01.T01:CDS |
| AACAGGCGCAAGGTAGTCAT+AGG | 0.418300 | 4:-9314540 | None:intergenic |
| CACACAAAATACATCCTTTG+TGG | 0.423572 | 4:-9314324 | None:intergenic |
| CAGAACCTTGGTTGCACTTG+TGG | 0.445824 | 4:+9314375 | MsG0480018744.01.T01:CDS |
| AGAGATTCACATGGATTCCT+AGG | 0.446952 | 4:-9314264 | None:intergenic |
| AAGCAACAAAGTTGTATTTG+TGG | 0.452140 | 4:+9314011 | MsG0480018744.01.T01:CDS |
| AACAAATGTTGCTGCATCCT+AGG | 0.456611 | 4:+9314247 | MsG0480018744.01.T01:CDS |
| CGGCACTAAAATGGATGTTA+AGG | 0.464791 | 4:+9315471 | MsG0480018744.01.T01:CDS |
| AAAATACATCCTTTGTGGTT+CGG | 0.466154 | 4:-9314319 | None:intergenic |
| AATAACCCAATTCCTTCAAC+AGG | 0.469036 | 4:-9314557 | None:intergenic |
| TGGTGCCAAGTGGAAGAGTT+AGG | 0.470444 | 4:-9314071 | None:intergenic |
| CATCATTTGAGGTTATGTCT+TGG | 0.473877 | 4:-9314203 | None:intergenic |
| ACCTCGGAATTTGGATTCTG+AGG | 0.478908 | 4:+9314413 | MsG0480018744.01.T01:CDS |
| AGGTTATGTCTTGGACGGTT+TGG | 0.479429 | 4:-9314194 | None:intergenic |
| TTCACTACTATTCAGAACCT+TGG | 0.487641 | 4:+9314363 | MsG0480018744.01.T01:CDS |
| AGGCAGGTTGCCTTTGTACT+CGG | 0.489856 | 4:-9315404 | None:intergenic |
| TGTCTTGGACGGTTTGGTAG+AGG | 0.497532 | 4:-9314188 | None:intergenic |
| AAGGTAGTCATAGGGGAACT+TGG | 0.501027 | 4:-9314531 | None:intergenic |
| ATTGTTCCAAACATCATTTG+AGG | 0.501956 | 4:-9314214 | None:intergenic |
| AGGTTAAGCTATACTTGAGT+AGG | 0.508695 | 4:-9315342 | None:intergenic |
| AGCTTCCTAACTCTTCCACT+TGG | 0.516451 | 4:+9314066 | MsG0480018744.01.T01:CDS |
| CTGATGAAGATTGGTTAGGC+AGG | 0.539982 | 4:-9315420 | None:intergenic |
| GGTGGATAAAAGGCGATTGA+TGG | 0.542099 | 4:-9314091 | None:intergenic |
| ACGGCTGATGAAGATTGGTT+AGG | 0.542485 | 4:-9315424 | None:intergenic |
| ACAGGCGCAAGGTAGTCATA+GGG | 0.544912 | 4:-9314539 | None:intergenic |
| ATTTGAGGTTATGTCTTGGA+CGG | 0.549712 | 4:-9314199 | None:intergenic |
| TGGCACAATCTTCAAATCAT+CGG | 0.556682 | 4:-9314511 | None:intergenic |
| AGAGGTATTTGATGTTGTCA+AGG | 0.562820 | 4:-9314170 | None:intergenic |
| TTCAGATTTGACTCAACTAG+AGG | 0.573354 | 4:+9314578 | MsG0480018744.01.T01:CDS |
| AGAGTAAAACCTTGCACAAG+TGG | 0.576824 | 4:+9315448 | MsG0480018744.01.T01:CDS |
| ATTTACTTGCTCAAGACCCA+TGG | 0.580876 | 4:-9313938 | None:intergenic |
| TCAGGGTAATAGTACTAGTG+TGG | 0.581620 | 4:+9314437 | MsG0480018744.01.T01:CDS |
| CCTCGGAATTTGGATTCTGA+GGG | 0.588534 | 4:+9314414 | MsG0480018744.01.T01:CDS |
| TTAGTGCCGCCACTTGTGCA+AGG | 0.589354 | 4:-9315457 | None:intergenic |
| ATCATCAACAAAATCACCGT+TGG | 0.600474 | 4:-9315536 | None:intergenic |
| TAGTGTGGATGCTCAAAATG+AGG | 0.602519 | 4:+9314452 | MsG0480018744.01.T01:CDS |
| TATTTGATGTTGTCAAGGAA+TGG | 0.603436 | 4:-9314165 | None:intergenic |
| CAATTCCTTCAACAGGCGCA+AGG | 0.619456 | 4:-9314550 | None:intergenic |
| ACACAAAATTGGCAAGCAAG+AGG | 0.627597 | 4:+9314608 | MsG0480018744.01.T01:CDS |
| CCCTCAGAATCCAAATTCCG+AGG | 0.628234 | 4:-9314414 | None:intergenic |
| AAAAGTAGCTCCGAGTACAA+AGG | 0.638616 | 4:+9315394 | MsG0480018744.01.T01:CDS |
| ATTTGTCATAGGTTCGTGAG+AGG | 0.639561 | 4:-9315362 | None:intergenic |
| ATCATCTTTGTAGAAGCCAA+CGG | 0.648266 | 4:+9315520 | MsG0480018744.01.T01:CDS |
| GAAAACCAACAAAGAGACCT+CGG | 0.651632 | 4:+9314397 | MsG0480018744.01.T01:CDS |
| GTAAAACCTTGCACAAGTGG+CGG | 0.651940 | 4:+9315451 | MsG0480018744.01.T01:CDS |
| CAGGCGCAAGGTAGTCATAG+GGG | 0.659750 | 4:-9314538 | None:intergenic |
| TTGAAGATACCGAACCACAA+AGG | 0.665251 | 4:+9314310 | MsG0480018744.01.T01:CDS |
| TTCAAGCACAGAGATTCACA+TGG | 0.672714 | 4:-9314273 | None:intergenic |
| AATTTGGATTCTGAGGGTCA+GGG | 0.676851 | 4:+9314420 | MsG0480018744.01.T01:CDS |
| AGGCGATTGATGGTGCCAAG+TGG | 0.699497 | 4:-9314081 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATATAATTTGAAGAAAA+AGG | + | Chr4:9315116-9315135 | MsG0480018744.01.T01:intron | 10.0% |
| !!! | TGTTTATTTTACAAAAATAA+AGG | - | Chr4:9314766-9314785 | None:intergenic | 10.0% |
| !! | AAAAAAAAACTAGATGAAAA+AGG | - | Chr4:9315227-9315246 | None:intergenic | 15.0% |
| !! | TTAAAATATAGGGAAAAATT+CGG | - | Chr4:9314863-9314882 | None:intergenic | 15.0% |
| !! | AATTAATAAAATGTGCAACA+TGG | - | Chr4:9315143-9315162 | None:intergenic | 20.0% |
| !! | TAAAATATAGGGAAAAATTC+GGG | - | Chr4:9314862-9314881 | None:intergenic | 20.0% |
| !! | TTCAAAATTGTATTTGTCAT+AGG | - | Chr4:9315376-9315395 | None:intergenic | 20.0% |
| !!! | TGTTGCACATTTTATTAATT+TGG | + | Chr4:9315143-9315162 | MsG0480018744.01.T01:intron | 20.0% |
| !!! | TTATTGTCATTTGTTTGTTT+TGG | - | Chr4:9315051-9315070 | None:intergenic | 20.0% |
| ! | AAACATTATAGAATAAGCAG+AGG | + | Chr4:9315082-9315101 | MsG0480018744.01.T01:intron | 25.0% |
| ! | ATATGCAAGTAAAAGGTTAT+GGG | - | Chr4:9314672-9314691 | None:intergenic | 25.0% |
| ! | CAATATTATAATCACAACTG+TGG | - | Chr4:9314796-9314815 | None:intergenic | 25.0% |
| ! | TAAGATCATATGCAAGTAAA+AGG | - | Chr4:9314679-9314698 | None:intergenic | 25.0% |
| !!! | AGAAAATGGTTCAACTTTTT+TGG | + | Chr4:9314485-9314504 | MsG0480018744.01.T01:CDS | 25.0% |
| !!! | CAGTTAGTTGATATTTTGAA+TGG | + | Chr4:9314907-9314926 | MsG0480018744.01.T01:intron | 25.0% |
| AAAATACATCCTTTGTGGTT+CGG | - | Chr4:9314322-9314341 | None:intergenic | 30.0% | |
| AAGCAACAAAGTTGTATTTG+TGG | + | Chr4:9314011-9314030 | MsG0480018744.01.T01:CDS | 30.0% | |
| ACATAACCTCAAATGATGTT+TGG | + | Chr4:9314208-9314227 | MsG0480018744.01.T01:CDS | 30.0% | |
| ACTAACTGATGTATCCTAAA+GGG | - | Chr4:9314831-9314850 | None:intergenic | 30.0% | |
| ATTGTTCCAAACATCATTTG+AGG | - | Chr4:9314217-9314236 | None:intergenic | 30.0% | |
| CATATGCAAGTAAAAGGTTA+TGG | - | Chr4:9314673-9314692 | None:intergenic | 30.0% | |
| GGAAAAAACTTGAAATCCTT+GGG | + | Chr4:9315164-9315183 | MsG0480018744.01.T01:intron | 30.0% | |
| TATGCAAGTAAAAGGTTATG+GGG | - | Chr4:9314671-9314690 | None:intergenic | 30.0% | |
| TATTTGATGTTGTCAAGGAA+TGG | - | Chr4:9314168-9314187 | None:intergenic | 30.0% | |
| TGGAAAAAACTTGAAATCCT+TGG | + | Chr4:9315163-9315182 | MsG0480018744.01.T01:intron | 30.0% | |
| TTACATTGCGTTGAAATACA+AGG | - | Chr4:9314981-9315000 | None:intergenic | 30.0% | |
| ! | CAATTTTCCAATTCTTCTCT+TGG | + | Chr4:9315266-9315285 | MsG0480018744.01.T01:intron | 30.0% |
| ! | TATTGTTGTTGGTGGATAAA+AGG | - | Chr4:9314104-9314123 | None:intergenic | 30.0% |
| ! | TTGGTCATTGTTATTGTTGT+TGG | - | Chr4:9314115-9314134 | None:intergenic | 30.0% |
| ! | TTTATGCACCAAGATTTTGA+CGG | - | Chr4:9313989-9314008 | None:intergenic | 30.0% |
| !! | AGTTGATATTTTGAATGGCA+TGG | + | Chr4:9314912-9314931 | MsG0480018744.01.T01:intron | 30.0% |
| AAATATCAACTAACTGTCGC+TGG | - | Chr4:9314903-9314922 | None:intergenic | 35.0% | |
| AATAACCCAATTCCTTCAAC+AGG | - | Chr4:9314560-9314579 | None:intergenic | 35.0% | |
| AGAGTTGTTGATGTTGTTGT+TGG | - | Chr4:9314134-9314153 | None:intergenic | 35.0% | |
| AGGTTAAGCTATACTTGAGT+AGG | - | Chr4:9315345-9315364 | None:intergenic | 35.0% | |
| ATCATCAACAAAATCACCGT+TGG | - | Chr4:9315539-9315558 | None:intergenic | 35.0% | |
| ATCATCTTTGTAGAAGCCAA+CGG | + | Chr4:9315520-9315539 | MsG0480018744.01.T01:CDS | 35.0% | |
| ATGCAAGTAAAAGGTTATGG+GGG | - | Chr4:9314670-9314689 | None:intergenic | 35.0% | |
| CACACAAAATACATCCTTTG+TGG | - | Chr4:9314327-9314346 | None:intergenic | 35.0% | |
| CACTAACTGATGTATCCTAA+AGG | - | Chr4:9314832-9314851 | None:intergenic | 35.0% | |
| GAGGAAATCACACACAAAAT+TGG | + | Chr4:9314597-9314616 | MsG0480018744.01.T01:CDS | 35.0% | |
| GAGGTCTTTCTTAGAGAAAA+TGG | + | Chr4:9314471-9314490 | MsG0480018744.01.T01:CDS | 35.0% | |
| TGGCACAATCTTCAAATCAT+CGG | - | Chr4:9314514-9314533 | None:intergenic | 35.0% | |
| TTCACTACTATTCAGAACCT+TGG | + | Chr4:9314363-9314382 | MsG0480018744.01.T01:CDS | 35.0% | |
| TTCAGATTTGACTCAACTAG+AGG | + | Chr4:9314578-9314597 | MsG0480018744.01.T01:CDS | 35.0% | |
| ! | ATTTGAGGTTATGTCTTGGA+CGG | - | Chr4:9314202-9314221 | None:intergenic | 35.0% |
| ! | CATCATTTGAGGTTATGTCT+TGG | - | Chr4:9314206-9314225 | None:intergenic | 35.0% |
| ! | GTCATTGTTATTGTTGTTGG+TGG | - | Chr4:9314112-9314131 | None:intergenic | 35.0% |
| ! | TGTGCAAGGTTTTACTCTAA+CGG | - | Chr4:9315446-9315465 | None:intergenic | 35.0% |
| !! | AACCACAACTTTAAAGCATG+AGG | - | Chr4:9314733-9314752 | None:intergenic | 35.0% |
| !! | AGAGGTATTTGATGTTGTCA+AGG | - | Chr4:9314173-9314192 | None:intergenic | 35.0% |
| !! | TTATGCACCAAGATTTTGAC+GGG | - | Chr4:9313988-9314007 | None:intergenic | 35.0% |
| !!! | ACGGTGATTTTGTTGATGAT+AGG | + | Chr4:9315539-9315558 | MsG0480018744.01.T01:CDS | 35.0% |
| AAAAGTAGCTCCGAGTACAA+AGG | + | Chr4:9315394-9315413 | MsG0480018744.01.T01:CDS | 40.0% | |
| AAATTCCGAGGTCTCTTTGT+TGG | - | Chr4:9314405-9314424 | None:intergenic | 40.0% | |
| AACAAAGAGACCTCGGAATT+TGG | + | Chr4:9314404-9314423 | MsG0480018744.01.T01:CDS | 40.0% | |
| AACAAATGTTGCTGCATCCT+AGG | + | Chr4:9314247-9314266 | MsG0480018744.01.T01:CDS | 40.0% | |
| AACCATTCCCGTCAAAATCT+TGG | + | Chr4:9313978-9313997 | MsG0480018744.01.T01:CDS | 40.0% | |
| ACACAAAATTGGCAAGCAAG+AGG | + | Chr4:9314608-9314627 | MsG0480018744.01.T01:CDS | 40.0% | |
| ACTTGAAATCCTTGGGTGAA+TGG | + | Chr4:9315171-9315190 | MsG0480018744.01.T01:intron | 40.0% | |
| AGAAAGAGTAGAGACATGCT+AGG | + | Chr4:9315014-9315033 | MsG0480018744.01.T01:intron | 40.0% | |
| AGAGATTCACATGGATTCCT+AGG | - | Chr4:9314267-9314286 | None:intergenic | 40.0% | |
| AGAGTAAAACCTTGCACAAG+TGG | + | Chr4:9315448-9315467 | MsG0480018744.01.T01:CDS | 40.0% | |
| ATTTGTCATAGGTTCGTGAG+AGG | - | Chr4:9315365-9315384 | None:intergenic | 40.0% | |
| CGGCACTAAAATGGATGTTA+AGG | + | Chr4:9315471-9315490 | MsG0480018744.01.T01:CDS | 40.0% | |
| GAAAACCAACAAAGAGACCT+CGG | + | Chr4:9314397-9314416 | MsG0480018744.01.T01:CDS | 40.0% | |
| GAACTAGCCAAGAGAAGAAT+TGG | - | Chr4:9315276-9315295 | None:intergenic | 40.0% | |
| TAGAAGAAACCATTCACCCA+AGG | - | Chr4:9315183-9315202 | None:intergenic | 40.0% | |
| TAGTGTGGATGCTCAAAATG+AGG | + | Chr4:9314452-9314471 | MsG0480018744.01.T01:CDS | 40.0% | |
| TCAGGGTAATAGTACTAGTG+TGG | + | Chr4:9314437-9314456 | MsG0480018744.01.T01:CDS | 40.0% | |
| TTCAAGCACAGAGATTCACA+TGG | - | Chr4:9314276-9314295 | None:intergenic | 40.0% | |
| TTGAAGATACCGAACCACAA+AGG | + | Chr4:9314310-9314329 | MsG0480018744.01.T01:CDS | 40.0% | |
| ! | AATTTGGATTCTGAGGGTCA+GGG | + | Chr4:9314420-9314439 | MsG0480018744.01.T01:CDS | 40.0% |
| !! | CACCTCATGCTTTAAAGTTG+TGG | + | Chr4:9314728-9314747 | MsG0480018744.01.T01:intron | 40.0% |
| AAGGTAGTCATAGGGGAACT+TGG | - | Chr4:9314534-9314553 | None:intergenic | 45.0% | |
| ACCTCGGAATTTGGATTCTG+AGG | + | Chr4:9314413-9314432 | MsG0480018744.01.T01:CDS | 45.0% | |
| AGCTTCCTAACTCTTCCACT+TGG | + | Chr4:9314066-9314085 | MsG0480018744.01.T01:CDS | 45.0% | |
| AGGTTATGTCTTGGACGGTT+TGG | - | Chr4:9314197-9314216 | None:intergenic | 45.0% | |
| CCTCGGAATTTGGATTCTGA+GGG | + | Chr4:9314414-9314433 | MsG0480018744.01.T01:CDS | 45.0% | |
| CTCTAACGGCTGATGAAGAT+TGG | - | Chr4:9315432-9315451 | None:intergenic | 45.0% | |
| GGTGGATAAAAGGCGATTGA+TGG | - | Chr4:9314094-9314113 | None:intergenic | 45.0% | |
| GTAAAACCTTGCACAAGTGG+CGG | + | Chr4:9315451-9315470 | MsG0480018744.01.T01:CDS | 45.0% | |
| TGCAGTATGCTTCACCCTTT+AGG | + | Chr4:9314814-9314833 | MsG0480018744.01.T01:intron | 45.0% | |
| TTGCGCCTGTTGAAGGAATT+GGG | + | Chr4:9314552-9314571 | MsG0480018744.01.T01:CDS | 45.0% | |
| ! | ACGGCTGATGAAGATTGGTT+AGG | - | Chr4:9315427-9315446 | None:intergenic | 45.0% |
| ! | CTGATGAAGATTGGTTAGGC+AGG | - | Chr4:9315423-9315442 | None:intergenic | 45.0% |
| ! | GAATTTGGATTCTGAGGGTC+AGG | + | Chr4:9314419-9314438 | MsG0480018744.01.T01:CDS | 45.0% |
| ! | GTTTTCCACAAGTGCAACCA+AGG | - | Chr4:9314383-9314402 | None:intergenic | 45.0% |
| !! | CACCAAGATTTTGACGGGAA+TGG | - | Chr4:9313983-9314002 | None:intergenic | 45.0% |
| !!! | AAATTTGAAATTTAAAATAT+AGG | - | Chr4:9314874-9314893 | None:intergenic | 5.0% |
| !!! | AATTTGAAATTTAAAATATA+GGG | - | Chr4:9314873-9314892 | None:intergenic | 5.0% |
| AACAGGCGCAAGGTAGTCAT+AGG | - | Chr4:9314543-9314562 | None:intergenic | 50.0% | |
| ACAGGCGCAAGGTAGTCATA+GGG | - | Chr4:9314542-9314561 | None:intergenic | 50.0% | |
| AGGCAGGTTGCCTTTGTACT+CGG | - | Chr4:9315407-9315426 | None:intergenic | 50.0% | |
| CAATTCCTTCAACAGGCGCA+AGG | - | Chr4:9314553-9314572 | None:intergenic | 50.0% | |
| CACAAGTGGCGGCACTAAAA+TGG | + | Chr4:9315462-9315481 | MsG0480018744.01.T01:CDS | 50.0% | |
| CAGAACCTTGGTTGCACTTG+TGG | + | Chr4:9314375-9314394 | MsG0480018744.01.T01:CDS | 50.0% | |
| CCCTCAGAATCCAAATTCCG+AGG | - | Chr4:9314417-9314436 | None:intergenic | 50.0% | |
| CTTGCGCCTGTTGAAGGAAT+TGG | + | Chr4:9314551-9314570 | MsG0480018744.01.T01:CDS | 50.0% | |
| ! | TGGTGCCAAGTGGAAGAGTT+AGG | - | Chr4:9314074-9314093 | None:intergenic | 50.0% |
| !! | TGTCTTGGACGGTTTGGTAG+AGG | - | Chr4:9314191-9314210 | None:intergenic | 50.0% |
| CAGGCGCAAGGTAGTCATAG+GGG | - | Chr4:9314541-9314560 | None:intergenic | 55.0% | |
| GACTACCTTGCGCCTGTTGA+AGG | + | Chr4:9314545-9314564 | MsG0480018744.01.T01:CDS | 55.0% | |
| TTAGTGCCGCCACTTGTGCA+AGG | - | Chr4:9315460-9315479 | None:intergenic | 55.0% | |
| !! | AGGCGATTGATGGTGCCAAG+TGG | - | Chr4:9314084-9314103 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr4 | gene | 9313940 | 9315573 | 9313940 | ID=MsG0480018744.01;Name=MsG0480018744.01 |
| Chr4 | mRNA | 9313940 | 9315573 | 9313940 | ID=MsG0480018744.01.T01;Parent=MsG0480018744.01;Name=MsG0480018744.01.T01;_AED=0.42;_eAED=0.42;_QI=0|0|0|1|1|1|2|0|309 |
| Chr4 | exon | 9313940 | 9314629 | 9313940 | ID=MsG0480018744.01.T01:exon:2584;Parent=MsG0480018744.01.T01 |
| Chr4 | exon | 9315334 | 9315573 | 9315334 | ID=MsG0480018744.01.T01:exon:2585;Parent=MsG0480018744.01.T01 |
| Chr4 | CDS | 9313940 | 9314629 | 9313940 | ID=MsG0480018744.01.T01:cds;Parent=MsG0480018744.01.T01 |
| Chr4 | CDS | 9315334 | 9315573 | 9315334 | ID=MsG0480018744.01.T01:cds;Parent=MsG0480018744.01.T01 |
| Gene Sequence |
| Protein sequence |
