AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480018553.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480018553.01.T01 MTR_4g017410 66.477 528 132 8 82 586 1 506 0.0 645
MsG0480018553.01.T01 MTR_4g017440 64.881 504 159 7 85 570 5 508 0.0 595
MsG0480018553.01.T01 MTR_4g017830 60.190 525 174 12 84 586 2 513 0.0 566
MsG0480018553.01.T01 MTR_4g017610 60.612 490 171 6 82 563 1 476 0.0 562
MsG0480018553.01.T01 MTR_4g017550 64.488 459 139 9 121 562 18 469 0.0 545
MsG0480018553.01.T01 MTR_4g017470 59.423 520 158 11 82 581 1 487 0.0 526
MsG0480018553.01.T01 MTR_4g019340 58.300 494 149 10 93 556 37 503 7.55e-176 508
MsG0480018553.01.T01 MTR_4g019310 37.406 532 265 17 82 580 1 497 2.67e-94 298
MsG0480018553.01.T01 MTR_7g066350 34.800 500 252 13 88 566 3 449 8.17e-75 246
MsG0480018553.01.T01 MTR_7g066340 32.329 498 268 12 84 562 2 449 9.08e-68 228
MsG0480018553.01.T01 MTR_7g058710 31.631 509 284 15 82 562 1 473 2.40e-66 224
MsG0480018553.01.T01 MTR_7g066260 33.861 505 263 16 81 562 2 458 5.24e-66 223
MsG0480018553.01.T01 MTR_7g066570 35.167 509 269 20 82 562 1 476 1.89e-65 224
MsG0480018553.01.T01 MTR_7g012680 33.981 515 262 19 79 578 1 452 1.96e-61 210
MsG0480018553.01.T01 MTR_7g066430 32.370 519 292 16 95 579 5 498 5.02e-61 210
MsG0480018553.01.T01 MTR_1g041315 32.596 497 244 15 90 550 10 451 6.71e-61 210
MsG0480018553.01.T01 MTR_7g066400 31.537 501 254 15 90 569 8 440 2.33e-58 202
MsG0480018553.01.T01 MTR_7g066400 27.586 232 138 4 86 317 232 433 8.40e-12 68.2
MsG0480018553.01.T01 MTR_7g063660 32.323 495 273 18 95 563 10 468 8.04e-58 201
MsG0480018553.01.T01 MTR_7g066580 31.601 481 255 14 100 554 1 433 4.16e-56 196
MsG0480018553.01.T01 MTR_7g066410 32.046 518 282 17 95 562 11 508 2.40e-55 196
MsG0480018553.01.T01 MTR_7g063900 31.328 482 271 15 93 544 9 460 4.15e-55 194
MsG0480018553.01.T01 MTR_7g066360 34.137 498 261 16 79 562 1 445 1.22e-53 190
MsG0480018553.01.T01 MTR_7g066290 37.092 337 181 8 87 408 8 328 4.20e-51 182
MsG0480018553.01.T01 MTR_7g062280 31.298 524 276 20 81 563 2 482 5.74e-50 180
MsG0480018553.01.T01 MTR_7g062300 30.255 509 289 17 80 563 3 470 2.12e-49 178
MsG0480018553.01.T01 MTR_7g063880 30.200 500 290 14 82 563 1 459 4.31e-49 177
MsG0480018553.01.T01 MTR_7g063840 29.555 494 291 16 91 563 7 464 6.59e-49 177
MsG0480018553.01.T01 MTR_7g066310 30.453 486 206 15 95 562 8 379 2.67e-48 174
MsG0480018553.01.T01 MTR_7g063890 31.106 479 271 15 95 544 28 476 1.56e-46 171
MsG0480018553.01.T01 MTR_7g066480 30.000 480 247 13 95 563 17 418 4.74e-46 168
MsG0480018553.01.T01 MTR_7g063920 29.000 500 267 13 79 563 1 427 8.90e-45 165
MsG0480018553.01.T01 MTR_7g063830 30.080 502 264 14 82 563 1 435 2.70e-44 164
MsG0480018553.01.T01 MTR_7g063820 31.311 511 284 17 82 562 1 474 8.16e-44 163
MsG0480018553.01.T01 MTR_4g019240 60.976 123 44 2 82 204 1 119 6.44e-42 149
MsG0480018553.01.T01 MTR_4g019240 65.079 63 14 2 524 586 112 166 5.26e-13 68.2
MsG0480018553.01.T01 MTR_2g029400 28.842 475 247 12 90 554 10 403 1.59e-41 155
MsG0480018553.01.T01 MTR_7g058700 27.835 485 224 16 106 562 531 917 2.44e-40 157
MsG0480018553.01.T01 MTR_7g066490 28.958 480 238 14 95 563 17 404 9.69e-40 150
MsG0480018553.01.T01 MTR_7g063670 27.992 493 285 14 87 562 8 447 2.99e-37 144
MsG0480018553.01.T01 MTR_3g007740 27.629 485 278 13 95 562 10 438 7.08e-35 137
MsG0480018553.01.T01 MTR_3g065200 25.709 494 287 14 95 570 4 435 1.00e-32 131
MsG0480018553.01.T01 MTR_7g066280 30.120 415 228 13 183 563 1 387 4.35e-32 129
MsG0480018553.01.T01 MTR_1g014060 33.475 236 128 10 103 324 9 229 3.71e-25 108
MsG0480018553.01.T01 MTR_7g066680 31.559 263 154 6 298 546 37 287 5.35e-25 107
MsG0480018553.01.T01 MTR_7g062270 35.714 182 96 8 91 264 7 175 3.28e-18 87.4
MsG0480018553.01.T01 MTR_8g445860 28.755 233 136 7 346 560 12 232 4.08e-16 78.6
MsG0480018553.01.T01 MTR_8g445860 27.451 255 147 6 82 318 1 235 5.73e-16 78.2
MsG0480018553.01.T01 MTR_0150s0010 27.236 246 134 5 342 560 5 232 6.61e-16 77.8
MsG0480018553.01.T01 MTR_0150s0010 27.500 240 143 7 95 318 11 235 2.26e-13 70.5
MsG0480018553.01.T01 MTR_1g115440 27.083 240 144 6 95 318 12 236 8.04e-16 77.8
MsG0480018553.01.T01 MTR_1g115440 27.897 233 141 6 346 560 10 233 4.32e-15 75.5
MsG0480018553.01.T01 MTR_7g100420 28.358 335 193 14 246 562 88 393 1.74e-15 79.3
MsG0480018553.01.T01 MTR_7g100420 47.619 63 33 0 94 156 39 101 1.10e-11 67.4
MsG0480018553.01.T01 MTR_6g006800 70.833 48 12 1 82 129 1 46 5.59e-14 67.4
MsG0480018553.01.T01 MTR_1g115455 26.556 241 140 7 95 318 10 230 6.88e-14 72.0
MsG0480018553.01.T01 MTR_1g115455 26.033 242 144 9 339 560 1 227 9.59e-12 65.5
MsG0480018553.01.T01 MTR_8g445920 40.299 67 40 0 342 408 5 71 1.32e-11 62.0
MsG0480018553.01.T01 MTR_8g044890 40.299 67 40 0 342 408 5 71 1.32e-11 62.0
MsG0480018553.01.T01 MTR_1g115450 40.000 80 40 1 346 417 6 85 2.24e-11 62.4
MsG0480018553.01.T01 MTR_1g115450 32.773 119 65 2 92 210 5 108 2.63e-11 62.0
MsG0480018553.01.T01 MTR_0150s0030 34.091 88 49 1 342 420 3 90 7.46e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480018553.01.T01 AT5G01130 31.429 490 270 16 87 562 3 440 8.22e-58 201
MsG0480018553.01.T01 AT5G01150 29.688 512 298 10 88 569 3 482 8.48e-55 194
MsG0480018553.01.T01 AT5G01120 29.116 498 309 14 91 562 6 485 4.60e-51 184
MsG0480018553.01.T01 AT3G09110 34.650 329 188 9 91 408 6 318 5.03e-48 171
MsG0480018553.01.T01 AT5G43240 28.794 514 286 15 95 562 10 489 1.34e-47 174
MsG0480018553.01.T01 AT5G43240 28.794 514 286 15 95 562 10 489 1.34e-47 174
MsG0480018553.01.T01 AT5G43240 28.794 514 286 15 95 562 10 489 1.34e-47 174
MsG0480018553.01.T01 AT3G09140 28.090 534 292 18 88 569 3 496 1.55e-46 171
MsG0480018553.01.T01 AT3G09140 27.049 244 154 6 339 559 1 243 3.41e-12 69.3
MsG0480018553.01.T01 AT5G01140 30.237 506 272 16 97 580 12 458 4.41e-46 169
MsG0480018553.01.T01 AT3G09140 26.690 562 292 19 88 569 3 524 1.11e-41 158
MsG0480018553.01.T01 AT3G09120 31.804 327 191 8 91 401 3 313 5.69e-41 151
MsG0480018553.01.T01 AT5G37320 27.856 499 296 18 101 569 18 482 4.52e-38 147
MsG0480018553.01.T01 AT5G43240 26.437 348 204 8 244 562 21 345 4.61e-23 101

Find 118 sgRNAs with CRISPR-Local

Find 299 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAACAGCCAGCTTATTATTT+TGG 0.124078 4:+6522224 MsG0480018553.01.T01:CDS
GTTTGTCTACTAACACTTTC+AGG 0.169641 4:-6521026 None:intergenic
TCCTCCCTTTGTATAATAAT+TGG 0.173244 4:-6522285 None:intergenic
TGGCATACAGCCATGGAATT+TGG 0.179175 4:+6521440 MsG0480018553.01.T01:CDS
AGGTGGGTTGTCTTTGTTCT+TGG 0.216712 4:-6521883 None:intergenic
AGATATCTCTTGCTTGATTA+TGG 0.256994 4:+6518605 MsG0480018553.01.T01:CDS
CGGGTCCATTGTAAAGCTTT+TGG 0.265521 4:+6522064 MsG0480018553.01.T01:CDS
CACCAATAACAGAAGTAAAA+TGG 0.276087 4:+6521941 MsG0480018553.01.T01:CDS
TTTGAGCCGTGTTACATCTA+AGG 0.281010 4:+6518957 MsG0480018553.01.T01:CDS
TTGATCATTGTTGCTATTGA+TGG 0.298828 4:-6521151 None:intergenic
GTCAAATTTGATTCTTGTTT+AGG 0.299305 4:-6522732 None:intergenic
ATTCTGAGGGTCAGTTAAAT+AGG 0.301553 4:+6521463 MsG0480018553.01.T01:CDS
AGTAAGTCACATGGATTTCT+TGG 0.302049 4:-6521297 None:intergenic
TAGTGTGGCTGAAACGTTTC+TGG 0.310990 4:+6521488 MsG0480018553.01.T01:CDS
TTGCAGCTGTTGAAGGAATT+CGG 0.312659 4:+6521555 MsG0480018553.01.T01:CDS
AAGTTACGTGAATCAATTAT+AGG 0.328775 4:+6522317 MsG0480018553.01.T01:CDS
TGCTATTGATGGTGGCTAAA+AGG 0.339959 4:-6521140 None:intergenic
AGCTTTCTTACCATGCCATT+CGG 0.346241 4:+6522044 MsG0480018553.01.T01:CDS
ACTGGCTAGTGGACTGGGTT+TGG 0.352248 4:+6522674 MsG0480018553.01.T01:CDS
ACCTCAATTCAGACGATGTT+TGG 0.367095 4:+6521241 MsG0480018553.01.T01:CDS
ATCTAAGGGTGTTCGCGGTC+TGG 0.369452 4:+6518972 MsG0480018553.01.T01:CDS
GCCTCTCACAAATACAATCT+TGG 0.374861 4:+6521851 MsG0480018553.01.T01:CDS
TCAGTTTCAAAGCATGGGCT+TGG 0.382439 4:+6518573 MsG0480018553.01.T01:CDS
TGCAGCTGTTGAAGGAATTC+GGG 0.386713 4:+6521556 MsG0480018553.01.T01:CDS
TCTTGATCCCTCTTTCGCTT+TGG 0.389102 4:-6522257 None:intergenic
CAGAAGTAAAATGGATGTTA+AGG 0.394664 4:+6521950 MsG0480018553.01.T01:CDS
CAGTTTCAAAGCATGGGCTT+GGG 0.400708 4:+6518574 MsG0480018553.01.T01:CDS
GCTTTCTTACCATGCCATTC+GGG 0.404087 4:+6522045 MsG0480018553.01.T01:CDS
TCTAGTGCCATCAAGGATTT+CGG 0.406512 4:-6522341 None:intergenic
AAATTCCATGGCTGTATGCC+AGG 0.407093 4:-6521438 None:intergenic
GAGAGGCTCGTTAGTGGTTA+AGG 0.413109 4:-6521835 None:intergenic
CATCGTCTGAATTGAGGTCT+TGG 0.415737 4:-6521236 None:intergenic
GACATACTTGCAGCTGTTGA+AGG 0.421440 4:+6521548 MsG0480018553.01.T01:CDS
GGAATGTTGAAGGGTTGGTT+TGG 0.427066 4:-6522194 None:intergenic
CGATGGATCTGCAACTCTCT+TGG 0.428355 4:+6518534 None:intergenic
ATTTACACTGGCTAGTGGAC+TGG 0.431451 4:+6522668 MsG0480018553.01.T01:CDS
CAAACTTCAGTTTCAAAGCA+TGG 0.452584 4:+6518567 MsG0480018553.01.T01:CDS
CCTCTCACAAATACAATCTT+GGG 0.454373 4:+6521852 MsG0480018553.01.T01:CDS
TTTGTCTACTAACACTTTCA+GGG 0.455933 4:-6521025 None:intergenic
TTGATGTCAAGAATGCTTCA+AGG 0.460218 4:-6522644 None:intergenic
ACACATCCAGCAAAAGAGTT+AGG 0.466364 4:-6522089 None:intergenic
TATAGGTCCGAAATCCTTGA+TGG 0.468124 4:+6522334 MsG0480018553.01.T01:CDS
GGATTGAGTAACACAGAAAC+GGG 0.473027 4:-6522146 None:intergenic
CACGAGGAATGTTGAAGGGT+TGG 0.473876 4:-6522199 None:intergenic
AAACTTCAGTTTCAAAGCAT+GGG 0.476190 4:+6518568 MsG0480018553.01.T01:CDS
GTTTCTGTGTTACTCAATCC+TGG 0.478867 4:+6522149 MsG0480018553.01.T01:CDS
TGGTTAAGGTATACTTGAGT+AGG 0.482160 4:-6521821 None:intergenic
GTACAATAGTGTGAAGAACT+TGG 0.482756 4:+6522121 MsG0480018553.01.T01:CDS
GTTTGGAAAACCAACCTCTA+GGG 0.484257 4:-6522177 None:intergenic
TGGTGCCAAGTGGAAGAGAT+AGG 0.487529 4:-6521110 None:intergenic
TTGAGCCGTGTTACATCTAA+GGG 0.490769 4:+6518958 MsG0480018553.01.T01:CDS
GTTTCGAAAAGTAGTAAACT+TGG 0.491017 4:-6521391 None:intergenic
AGCTTCCTATCTCTTCCACT+TGG 0.491188 4:+6521105 MsG0480018553.01.T01:CDS
CGAAACCTTAACTGCACTTG+TGG 0.496385 4:+6521408 MsG0480018553.01.T01:CDS
TTCAGACTTGACTCAAATAG+AGG 0.500328 4:+6521581 MsG0480018553.01.T01:CDS
GGTTTGGAAAACCAACCTCT+AGG 0.502092 4:-6522178 None:intergenic
ACTGTTGGTGCAGATTGCTT+AGG 0.504136 4:-6521903 None:intergenic
GTTGGTGCAGATTGCTTAGG+TGG 0.508685 4:-6521900 None:intergenic
AGGATTGAGTAACACAGAAA+CGG 0.515205 4:-6522147 None:intergenic
GACAGGTCAAAAGGTGTTGT+AGG 0.515602 4:+6522377 MsG0480018553.01.T01:CDS
TTTACACTGGCTAGTGGACT+GGG 0.516391 4:+6522669 MsG0480018553.01.T01:CDS
TGGATCTGCAACTCTCTTGG+CGG 0.517355 4:+6518537 MsG0480018553.01.T01:CDS
AAGAGTTATACTTGCTGCCA+TGG 0.518902 4:+6520963 MsG0480018553.01.T01:CDS
GTCTGAATTGAGGTCTTGGA+TGG 0.519900 4:-6521232 None:intergenic
TTCTACACGAGGAATGTTGA+AGG 0.521839 4:-6522204 None:intergenic
ATTTGTGAGAGGCTCGTTAG+TGG 0.522997 4:-6521841 None:intergenic
TTACTTCTGTTATTGGTGCA+AGG 0.527701 4:-6521936 None:intergenic
GCCATGGAATTTGGATTCTG+AGG 0.528284 4:+6521449 MsG0480018553.01.T01:CDS
CCTAAGCCAAAATAATAAGC+TGG 0.530209 4:-6522230 None:intergenic
ATCATTGTTGCTATTGATGG+TGG 0.530796 4:-6521148 None:intergenic
AAGTCCAATTATTATACAAA+GGG 0.533133 4:+6522281 MsG0480018553.01.T01:CDS
CTTGACATCAAAATTTACAC+TGG 0.536531 4:+6522656 MsG0480018553.01.T01:CDS
CCAACCTCTAGGGGTATACC+AGG 0.537768 4:-6522167 None:intergenic
TCTTGGGTCTAGTGCCATCA+AGG 0.537782 4:-6522348 None:intergenic
TAGGAACGCCAAAGCGAAAG+AGG 0.542595 4:+6522249 MsG0480018553.01.T01:CDS
CCCTCAGAATCCAAATTCCA+TGG 0.542858 4:-6521450 None:intergenic
TCCAATTATTATACAAAGGG+AGG 0.543047 4:+6522284 MsG0480018553.01.T01:CDS
TCAAAATTTACACTGGCTAG+TGG 0.545427 4:+6522663 MsG0480018553.01.T01:CDS
ACCAAACATCGTCTGAATTG+AGG 0.548115 4:-6521242 None:intergenic
ATGGTGATGATTCTGAGAGT+TGG 0.552671 4:-6521179 None:intergenic
CAAGTCCAATTATTATACAA+AGG 0.557972 4:+6522280 MsG0480018553.01.T01:CDS
GTTACATCTAAGGGTGTTCG+CGG 0.566172 4:+6518967 MsG0480018553.01.T01:CDS
AGACGCGAATAAACAGAAAG+TGG 0.569116 4:-6522452 None:intergenic
AATTCCATGGCTGTATGCCA+GGG 0.570531 4:-6521437 None:intergenic
CCATGGAATTTGGATTCTGA+GGG 0.571821 4:+6521450 MsG0480018553.01.T01:CDS
CCCAAGATTGTATTTGTGAG+AGG 0.572271 4:-6521852 None:intergenic
CAAGGCATTACTCCAACTGT+TGG 0.575256 4:-6521918 None:intergenic
GAAGTCAACAAAATCTCCGT+TGG 0.575489 4:-6522015 None:intergenic
AAGCAATCTGCACCAACAGT+TGG 0.576657 4:+6521906 MsG0480018553.01.T01:CDS
TTGGTGCAGATTGCTTAGGT+GGG 0.579593 4:-6521899 None:intergenic
CCTGGTATACCCCTAGAGGT+TGG 0.584272 4:+6522167 MsG0480018553.01.T01:CDS
CAAGAGAGTTGCAGATCCAT+CGG 0.596885 4:-6518533 None:intergenic
GAGGAAATCACACACAACAT+TGG 0.597623 4:+6521600 MsG0480018553.01.T01:CDS
TTGTCTACTAACACTTTCAG+GGG 0.605060 4:-6521024 None:intergenic
AGGTCCCAAAAGCTTTACAA+TGG 0.609484 4:-6522069 None:intergenic
TACAATGGACCCGAATGGCA+TGG 0.610188 4:-6522054 None:intergenic
ATGATCTTTGTAGAAGCCAA+CGG 0.617543 4:+6521999 MsG0480018553.01.T01:CDS
TTCACTTCAAGATCATCAAG+AGG 0.622399 4:-6522500 None:intergenic
TTTGGAAAACCAACCTCTAG+GGG 0.622428 4:-6522176 None:intergenic
GATAAGCATTGGTGAAGCTG+AGG 0.623006 4:+6522526 MsG0480018553.01.T01:CDS
GGTCTTGGATGGTTTCGTAG+AGG 0.631330 4:-6521221 None:intergenic
AGGAACGCCAAAGCGAAAGA+GGG 0.635468 4:+6522250 MsG0480018553.01.T01:CDS
ACACAACATTGGCAAGCAAG+AGG 0.636713 4:+6521611 MsG0480018553.01.T01:CDS
TTGTTCGTGTTGAGAAGCCA+TGG 0.638508 4:-6520980 None:intergenic
AAGTGTTAGTAGACAAACAA+AGG 0.641992 4:+6521031 MsG0480018553.01.T01:CDS
TCTACACGAGGAATGTTGAA+GGG 0.646068 4:-6522203 None:intergenic
AGCTTTACAATGGACCCGAA+TGG 0.646881 4:-6522059 None:intergenic
ATTCCATGGCTGTATGCCAG+GGG 0.663395 4:-6521436 None:intergenic
CAATCCTGGTATACCCCTAG+AGG 0.663504 4:+6522163 MsG0480018553.01.T01:CDS
TCAGTTAAATAGGACTAGTG+TGG 0.666324 4:+6521473 MsG0480018553.01.T01:CDS
GGTGGCTAAAAGGCGGACAA+TGG 0.668124 4:-6521130 None:intergenic
GAAGTGAAGATGATAAGCAT+TGG 0.669635 4:+6522515 MsG0480018553.01.T01:CDS
TTCATGCACAGTAAGTCACA+TGG 0.670403 4:-6521306 None:intergenic
TATTGATGGTGGCTAAAAGG+CGG 0.676194 4:-6521137 None:intergenic
TTCCATGGCTGTATGCCAGG+GGG 0.683468 4:-6521435 None:intergenic
AGGCGGACAATGGTGCCAAG+TGG 0.686421 4:-6521120 None:intergenic
GAACACCCTTAGATGTAACA+CGG 0.690582 4:-6518963 None:intergenic
TAAGCTGGCTGTTCTACACG+AGG 0.728528 4:-6522215 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATGTATTAAATTAAGAA+TGG - Chr4:6518847-6518866 None:intergenic 10.0%
!! AAGTTGAAAAAAAAAAAAAA+AGG - Chr4:6518646-6518665 None:intergenic 10.0%
!!! TGTTAATTTTTTTAATACAT+AGG - Chr4:6519222-6519241 None:intergenic 10.0%
!!! TTTTTTTTTTTTTTTCAACT+TGG + Chr4:6518645-6518664 MsG0480018553.01.T01:intron 10.0%
!!! TTTTTTTTTTTTTTTTTGAC+TGG + Chr4:6518792-6518811 MsG0480018553.01.T01:intron 10.0%
!! TATACTTTGATATAAGATTT+CGG - Chr4:6520140-6520159 None:intergenic 15.0%
!!! AAAAATATTCGATTTTTTGT+CGG + Chr4:6519492-6519511 MsG0480018553.01.T01:intron 15.0%
!!! AATTGATCATAACTTTATTT+TGG - Chr4:6520533-6520552 None:intergenic 15.0%
!! AAGTCCAATTATTATACAAA+GGG + Chr4:6522281-6522300 MsG0480018553.01.T01:CDS 20.0%
!! ATGCATGAAGATATATTTAT+AGG - Chr4:6520881-6520900 None:intergenic 20.0%
!! CAAAAATAAGTTTCTACATT+TGG - Chr4:6520742-6520761 None:intergenic 20.0%
!! CAGAAAACAATTTATAAACT+TGG - Chr4:6522574-6522593 None:intergenic 20.0%
!! CATTAAGAATTGAAATTGAT+TGG - Chr4:6521731-6521750 None:intergenic 20.0%
!! TCGGTATCATATAATAATAT+AGG + Chr4:6520059-6520078 MsG0480018553.01.T01:intron 20.0%
!! TGCATGAAGATATATTTATA+GGG - Chr4:6520880-6520899 None:intergenic 20.0%
!! TTCATTAATATATTGCTTGT+TGG - Chr4:6519332-6519351 None:intergenic 20.0%
!!! AGTCTGAAACATTATATAAA+AGG - Chr4:6519603-6519622 None:intergenic 20.0%
!!! ATGTGTCTTTTATTTTAGAT+CGG - Chr4:6519027-6519046 None:intergenic 20.0%
!!! TTTGAGGTTTTATTTTAGAT+CGG + Chr4:6519535-6519554 MsG0480018553.01.T01:intron 20.0%
! AAAATTATGGCTTAACAAGA+GGG - Chr4:6520237-6520256 None:intergenic 25.0%
! AAGTTACGTGAATCAATTAT+AGG + Chr4:6522317-6522336 MsG0480018553.01.T01:CDS 25.0%
! AATGGAAATACATGAAACTA+GGG - Chr4:6518829-6518848 None:intergenic 25.0%
! AGTTATTGGGCTAATAAAAT+GGG - Chr4:6519635-6519654 None:intergenic 25.0%
! CAAATTAAACCGCATATATT+AGG - Chr4:6519099-6519118 None:intergenic 25.0%
! CAAGTCCAATTATTATACAA+AGG + Chr4:6522280-6522299 MsG0480018553.01.T01:CDS 25.0%
! CACATACACAGTAAAATAAT+AGG + Chr4:6519177-6519196 MsG0480018553.01.T01:intron 25.0%
! CTAATATATGCGGTTTAATT+TGG + Chr4:6519097-6519116 MsG0480018553.01.T01:intron 25.0%
! CTGAAACATTATATAAAAGG+AGG - Chr4:6519600-6519619 None:intergenic 25.0%
! GATGGAATAATCATAAACAA+TGG - Chr4:6520912-6520931 None:intergenic 25.0%
! GTTTAGGTCACAATAATTAT+CGG + Chr4:6520630-6520649 MsG0480018553.01.T01:intron 25.0%
! GTTTATGATTATTCCATCTA+GGG + Chr4:6520914-6520933 MsG0480018553.01.T01:intron 25.0%
! TAAAAAAAATGTGACGACAA+AGG - Chr4:6521655-6521674 None:intergenic 25.0%
! TATTATTATATGATACCGAG+TGG - Chr4:6520058-6520077 None:intergenic 25.0%
! TCAATATCTATACATCAGAA+AGG - Chr4:6521800-6521819 None:intergenic 25.0%
! TCTGTTGAAAATATCAATCA+GGG - Chr4:6520574-6520593 None:intergenic 25.0%
! TGATCAAATCCTAATATATG+CGG + Chr4:6519087-6519106 MsG0480018553.01.T01:intron 25.0%
! TGTTTATGATTATTCCATCT+AGG + Chr4:6520913-6520932 MsG0480018553.01.T01:intron 25.0%
! TTATATCCCAAACAAAGTTT+AGG + Chr4:6520614-6520633 MsG0480018553.01.T01:intron 25.0%
! TTTCATTGTATCATCTTTCA+GGG + Chr4:6518764-6518783 MsG0480018553.01.T01:intron 25.0%
! TTTGTTTAGTAAAAATCGCT+AGG - Chr4:6519458-6519477 None:intergenic 25.0%
!! ATCCATTTTACTTCTGTTAT+TGG - Chr4:6521946-6521965 None:intergenic 25.0%
!! GTCAAATTTGATTCTTGTTT+AGG - Chr4:6522735-6522754 None:intergenic 25.0%
!! TCTAAAATAAAAGACACATG+TGG + Chr4:6519028-6519047 MsG0480018553.01.T01:intron 25.0%
!! TTTTCATTGTATCATCTTTC+AGG + Chr4:6518763-6518782 MsG0480018553.01.T01:intron 25.0%
!!! AAAAATGGATTATATGCTGT+TGG + Chr4:6522410-6522429 MsG0480018553.01.T01:CDS 25.0%
!!! AGTATAACTCTTGTTGTTTT+TGG - Chr4:6520955-6520974 None:intergenic 25.0%
!!! AGTTTTTTTGGATTGATTTG+AGG + Chr4:6519519-6519538 MsG0480018553.01.T01:intron 25.0%
!!! ATGTTTGTTCTTTTGTTATC+TGG + Chr4:6518701-6518720 MsG0480018553.01.T01:intron 25.0%
!!! GATTTTTTTGACCAAGAAAA+AGG + Chr4:6518894-6518913 MsG0480018553.01.T01:CDS 25.0%
!!! TTTCTGTTATTTTAACCTCT+TGG + Chr4:6522588-6522607 MsG0480018553.01.T01:intron 25.0%
!!! TTTTTGATGTTTTCAAGGAA+TGG - Chr4:6521201-6521220 None:intergenic 25.0%
AAACTTCAGTTTCAAAGCAT+GGG + Chr4:6518568-6518587 MsG0480018553.01.T01:CDS 30.0%
AAATTATGGCTTAACAAGAG+GGG - Chr4:6520236-6520255 None:intergenic 30.0%
AAGTGTTAGTAGACAAACAA+AGG + Chr4:6521031-6521050 MsG0480018553.01.T01:CDS 30.0%
AGAATTGAAATTGATTGGAC+AGG - Chr4:6521726-6521745 None:intergenic 30.0%
AGATATCTCTTGCTTGATTA+TGG + Chr4:6518605-6518624 MsG0480018553.01.T01:CDS 30.0%
ATGGAAATACATGAAACTAG+GGG - Chr4:6518828-6518847 None:intergenic 30.0%
ATTGTGACCTAAACTTTGTT+TGG - Chr4:6520624-6520643 None:intergenic 30.0%
CAAAATTATGGCTTAACAAG+AGG - Chr4:6520238-6520257 None:intergenic 30.0%
CACCAATAACAGAAGTAAAA+TGG + Chr4:6521941-6521960 MsG0480018553.01.T01:CDS 30.0%
CAGAAGTAAAATGGATGTTA+AGG + Chr4:6521950-6521969 MsG0480018553.01.T01:CDS 30.0%
CCAAGGTACAATCATATTTA+CGG + Chr4:6519854-6519873 MsG0480018553.01.T01:intron 30.0%
CGTAAATATGATTGTACCTT+GGG - Chr4:6519856-6519875 None:intergenic 30.0%
CTGTTGAAAATATCAATCAG+GGG - Chr4:6520573-6520592 None:intergenic 30.0%
CTTGACATCAAAATTTACAC+TGG + Chr4:6522656-6522675 MsG0480018553.01.T01:CDS 30.0%
GAATGGAAATACATGAAACT+AGG - Chr4:6518830-6518849 None:intergenic 30.0%
GAGTTATTGGGCTAATAAAA+TGG - Chr4:6519636-6519655 None:intergenic 30.0%
GGAAAGGAAACAGAAAAATA+GGG - Chr4:6519935-6519954 None:intergenic 30.0%
GTAGGATTTGTGAAGAAAAA+TGG + Chr4:6522395-6522414 MsG0480018553.01.T01:CDS 30.0%
GTCTGTTGAAAATATCAATC+AGG - Chr4:6520575-6520594 None:intergenic 30.0%
GTTTCGAAAAGTAGTAAACT+TGG - Chr4:6521394-6521413 None:intergenic 30.0%
TCCAATTATTATACAAAGGG+AGG + Chr4:6522284-6522303 MsG0480018553.01.T01:CDS 30.0%
TCCTCCCTTTGTATAATAAT+TGG - Chr4:6522288-6522307 None:intergenic 30.0%
TGTTGAAAATATCAATCAGG+GGG - Chr4:6520572-6520591 None:intergenic 30.0%
TTAGTAAAAATCGCTAGGAT+CGG - Chr4:6519453-6519472 None:intergenic 30.0%
TTGGACAGGTTAAAACAATA+AGG - Chr4:6521712-6521731 None:intergenic 30.0%
TTTGTCTACTAACACTTTCA+GGG - Chr4:6521028-6521047 None:intergenic 30.0%
TTTGTGATTAATTTACACCG+CGG + Chr4:6520093-6520112 MsG0480018553.01.T01:intron 30.0%
! AGAGGTTTTTGATGTTTTCA+AGG - Chr4:6521206-6521225 None:intergenic 30.0%
! CAGTTCAGTCTAGTTTAATT+CGG + Chr4:6519400-6519419 MsG0480018553.01.T01:intron 30.0%
! TTGATCATTGTTGCTATTGA+TGG - Chr4:6521154-6521173 None:intergenic 30.0%
! TTGTGACCTAAACTTTGTTT+GGG - Chr4:6520623-6520642 None:intergenic 30.0%
!! AAATAGGTTTTGCTATCGTA+GGG - Chr4:6520328-6520347 None:intergenic 30.0%
!! ATTATTCCATCTAGGGTTTT+AGG + Chr4:6520921-6520940 MsG0480018553.01.T01:intron 30.0%
!! CCATAATTTTGTGCTTTGTT+GGG + Chr4:6520247-6520266 MsG0480018553.01.T01:intron 30.0%
!! TAAATAGGTTTTGCTATCGT+AGG - Chr4:6520329-6520348 None:intergenic 30.0%
!! TTATTCCATCTAGGGTTTTA+GGG + Chr4:6520922-6520941 MsG0480018553.01.T01:intron 30.0%
!!! AACATCGAAAGTCACTTTTA+TGG + Chr4:6520001-6520020 MsG0480018553.01.T01:intron 30.0%
!!! AAGGAACAAAGTTGTTTTTG+TGG + Chr4:6521050-6521069 MsG0480018553.01.T01:CDS 30.0%
!!! CGAATATTTTTTGATGCGTT+TGG - Chr4:6519483-6519502 None:intergenic 30.0%
!!! TTACACTTTTTCATGTGTTG+TGG + Chr4:6520492-6520511 MsG0480018553.01.T01:intron 30.0%
!!! TTTGTCGGTTTCAGTTTTTT+TGG + Chr4:6519507-6519526 MsG0480018553.01.T01:intron 30.0%
AAAAGTGACTTTCGATGTTG+CGG - Chr4:6520000-6520019 None:intergenic 35.0%
AAAGCCTACAACACAAGTAA+AGG - Chr4:6522618-6522637 None:intergenic 35.0%
AACACTTGTATAGTGTTGCA+TGG - Chr4:6519820-6519839 None:intergenic 35.0%
AAGCCTACAACACAAGTAAA+GGG - Chr4:6522617-6522636 None:intergenic 35.0%
AATTATGGCTTAACAAGAGG+GGG - Chr4:6520235-6520254 None:intergenic 35.0%
AGATTGTGCATTCAATGTCT+TGG + Chr4:6520763-6520782 MsG0480018553.01.T01:intron 35.0%
AGCCGAAATTAAAAAGTGGA+GGG - Chr4:6520359-6520378 None:intergenic 35.0%
AGGATTGAGTAACACAGAAA+CGG - Chr4:6522150-6522169 None:intergenic 35.0%
AGTAAGTCACATGGATTTCT+TGG - Chr4:6521300-6521319 None:intergenic 35.0%
ATGATCTTTGTAGAAGCCAA+CGG + Chr4:6521999-6522018 MsG0480018553.01.T01:CDS 35.0%
ATGTTGTTAGAGAACACAGA+TGG - Chr4:6519738-6519757 None:intergenic 35.0%
ATTCCCTTTACTTGTGTTGT+AGG + Chr4:6522611-6522630 MsG0480018553.01.T01:intron 35.0%
CAAACTTCAGTTTCAAAGCA+TGG + Chr4:6518567-6518586 MsG0480018553.01.T01:CDS 35.0%
CCCAACAAAGCACAAAATTA+TGG - Chr4:6520250-6520269 None:intergenic 35.0%
CCGTAAATATGATTGTACCT+TGG - Chr4:6519857-6519876 None:intergenic 35.0%
CCTAAGCCAAAATAATAAGC+TGG - Chr4:6522233-6522252 None:intergenic 35.0%
CCTCTCACAAATACAATCTT+GGG + Chr4:6521852-6521871 MsG0480018553.01.T01:CDS 35.0%
CTTCTAAACTTGTGCCTTAA+GGG - Chr4:6520719-6520738 None:intergenic 35.0%
GAAATTAAAAAGTGGAGGGA+GGG - Chr4:6520355-6520374 None:intergenic 35.0%
GAAGTGAAGATGATAAGCAT+TGG + Chr4:6522515-6522534 MsG0480018553.01.T01:CDS 35.0%
GAATCTAATCCCATGAAACT+TGG - Chr4:6519774-6519793 None:intergenic 35.0%
GGGAAAGGAAACAGAAAAAT+AGG - Chr4:6519936-6519955 None:intergenic 35.0%
GTACAATAGTGTGAAGAACT+TGG + Chr4:6522121-6522140 MsG0480018553.01.T01:CDS 35.0%
GTGAAGCTTCATGATTAAGA+CGG - Chr4:6521690-6521709 None:intergenic 35.0%
GTTGAAAATATCAATCAGGG+GGG - Chr4:6520571-6520590 None:intergenic 35.0%
GTTTGTCTACTAACACTTTC+AGG - Chr4:6521029-6521048 None:intergenic 35.0%
TCAAGTCAGTGAGAGAAATA+AGG - Chr4:6519898-6519917 None:intergenic 35.0%
TGAAGCTTCATGATTAAGAC+GGG - Chr4:6521689-6521708 None:intergenic 35.0%
TGGTTAAGGTATACTTGAGT+AGG - Chr4:6521824-6521843 None:intergenic 35.0%
TGTGCTTTGATACGAACATA+AGG - Chr4:6519691-6519710 None:intergenic 35.0%
TTACTTCTGTTATTGGTGCA+AGG - Chr4:6521939-6521958 None:intergenic 35.0%
TTATGTTCGTATCAAAGCAC+AGG + Chr4:6519690-6519709 MsG0480018553.01.T01:intron 35.0%
TTCACTTCAAGATCATCAAG+AGG - Chr4:6522503-6522522 None:intergenic 35.0%
TTCAGACTTGACTCAAATAG+AGG + Chr4:6521581-6521600 MsG0480018553.01.T01:CDS 35.0%
TTGATGTCAAGAATGCTTCA+AGG - Chr4:6522647-6522666 None:intergenic 35.0%
TTGTCTACTAACACTTTCAG+GGG - Chr4:6521027-6521046 None:intergenic 35.0%
! ATCATTGTTGCTATTGATGG+TGG - Chr4:6521151-6521170 None:intergenic 35.0%
! ATTCTGAGGGTCAGTTAAAT+AGG + Chr4:6521463-6521482 MsG0480018553.01.T01:CDS 35.0%
! GAACAGCCAGCTTATTATTT+TGG + Chr4:6522224-6522243 MsG0480018553.01.T01:CDS 35.0%
! GATCGTCATATCCTTTTTCT+TGG - Chr4:6518908-6518927 None:intergenic 35.0%
! GCCATAATTTTGTGCTTTGT+TGG + Chr4:6520246-6520265 MsG0480018553.01.T01:intron 35.0%
! TCAAAATTTACACTGGCTAG+TGG + Chr4:6522663-6522682 MsG0480018553.01.T01:CDS 35.0%
! TCAGTTAAATAGGACTAGTG+TGG + Chr4:6521473-6521492 MsG0480018553.01.T01:CDS 35.0%
!! TGTTTTTGTGGAAGCAACAA+AGG + Chr4:6521062-6521081 MsG0480018553.01.T01:CDS 35.0%
!!! CCAGCTTATTATTTTGGCTT+AGG + Chr4:6522230-6522249 MsG0480018553.01.T01:CDS 35.0%
!!! CTCCCTCCACTTTTTAATTT+CGG + Chr4:6520354-6520373 MsG0480018553.01.T01:intron 35.0%
!!! GGTTTTATTTTAGATCGGTG+TGG + Chr4:6519540-6519559 MsG0480018553.01.T01:intron 35.0%
AAAATGTGACGACAAAGGAG+AGG - Chr4:6521650-6521669 None:intergenic 40.0%
AAATGTGACGACAAAGGAGA+GGG - Chr4:6521649-6521668 None:intergenic 40.0%
AAGAAGAAGAGTTCCTATCG+AGG - Chr4:6520422-6520441 None:intergenic 40.0%
AAGACACATGTGGTTCAGTT+CGG + Chr4:6519038-6519057 MsG0480018553.01.T01:intron 40.0%
ACAAGTAAAGGGAATCCAAG+AGG - Chr4:6522606-6522625 None:intergenic 40.0%
ACACATCCAGCAAAAGAGTT+AGG - Chr4:6522092-6522111 None:intergenic 40.0%
ACATATCTCGCCAAGTTTCA+TGG + Chr4:6519761-6519780 MsG0480018553.01.T01:intron 40.0%
ACCAAACATCGTCTGAATTG+AGG - Chr4:6521245-6521264 None:intergenic 40.0%
ACCTCAATTCAGACGATGTT+TGG + Chr4:6521241-6521260 MsG0480018553.01.T01:CDS 40.0%
AGAAGAAGAGTTCCTATCGA+GGG - Chr4:6520421-6520440 None:intergenic 40.0%
AGACGCGAATAAACAGAAAG+TGG - Chr4:6522455-6522474 None:intergenic 40.0%
AGCTTTCTTACCATGCCATT+CGG + Chr4:6522044-6522063 MsG0480018553.01.T01:CDS 40.0%
AGGCAGCCGAAATTAAAAAG+TGG - Chr4:6520363-6520382 None:intergenic 40.0%
AGGTCCCAAAAGCTTTACAA+TGG - Chr4:6522072-6522091 None:intergenic 40.0%
ATATGATTGTACCTTGGGTG+TGG - Chr4:6519851-6519870 None:intergenic 40.0%
CAGCCGAAATTAAAAAGTGG+AGG - Chr4:6520360-6520379 None:intergenic 40.0%
CATATCTCGCCAAGTTTCAT+GGG + Chr4:6519762-6519781 MsG0480018553.01.T01:intron 40.0%
CCATGGAATTTGGATTCTGA+GGG + Chr4:6521450-6521469 MsG0480018553.01.T01:CDS 40.0%
CCCAAGATTGTATTTGTGAG+AGG - Chr4:6521855-6521874 None:intergenic 40.0%
CGAAATTAAAAAGTGGAGGG+AGG - Chr4:6520356-6520375 None:intergenic 40.0%
GAACACCCTTAGATGTAACA+CGG - Chr4:6518966-6518985 None:intergenic 40.0%
GAACTCTTCTTCTTAGCATC+AGG + Chr4:6520428-6520447 MsG0480018553.01.T01:intron 40.0%
GAAGTCAACAAAATCTCCGT+TGG - Chr4:6522018-6522037 None:intergenic 40.0%
GAGGAAATCACACACAACAT+TGG + Chr4:6521600-6521619 MsG0480018553.01.T01:CDS 40.0%
GCCTCTCACAAATACAATCT+TGG + Chr4:6521851-6521870 MsG0480018553.01.T01:CDS 40.0%
GCTTCTAAACTTGTGCCTTA+AGG - Chr4:6520720-6520739 None:intergenic 40.0%
GGATTGAGTAACACAGAAAC+GGG - Chr4:6522149-6522168 None:intergenic 40.0%
GGCAAGGGTTATGAGTTATT+GGG - Chr4:6519648-6519667 None:intergenic 40.0%
GTTTGGAAAACCAACCTCTA+GGG - Chr4:6522180-6522199 None:intergenic 40.0%
TATAGGTCCGAAATCCTTGA+TGG + Chr4:6522334-6522353 MsG0480018553.01.T01:CDS 40.0%
TCTACACGAGGAATGTTGAA+GGG - Chr4:6522206-6522225 None:intergenic 40.0%
TCTAGTGCCATCAAGGATTT+CGG - Chr4:6522344-6522363 None:intergenic 40.0%
TGGTCAATATTAGACGCAGA+TGG - Chr4:6519800-6519819 None:intergenic 40.0%
TTATATGATACCGAGTGGAC+CGG - Chr4:6520053-6520072 None:intergenic 40.0%
TTCAGAATCTTGTGCCCTTA+AGG + Chr4:6520702-6520721 MsG0480018553.01.T01:intron 40.0%
TTCATGCACAGTAAGTCACA+TGG - Chr4:6521309-6521328 None:intergenic 40.0%
TTCGGCTATTGTGAATGTTG+TGG - Chr4:6520122-6520141 None:intergenic 40.0%
TTCTACACGAGGAATGTTGA+AGG - Chr4:6522207-6522226 None:intergenic 40.0%
TTGAGCCGTGTTACATCTAA+GGG + Chr4:6518958-6518977 MsG0480018553.01.T01:CDS 40.0%
TTGCAGCTGTTGAAGGAATT+CGG + Chr4:6521555-6521574 MsG0480018553.01.T01:CDS 40.0%
TTTGAGCCGTGTTACATCTA+AGG + Chr4:6518957-6518976 MsG0480018553.01.T01:CDS 40.0%
TTTGGAAAACCAACCTCTAG+GGG - Chr4:6522179-6522198 None:intergenic 40.0%
! AACTCTTTTGCTGGATGTGT+TGG + Chr4:6522092-6522111 MsG0480018553.01.T01:CDS 40.0%
! AAGAGTTATACTTGCTGCCA+TGG + Chr4:6520963-6520982 MsG0480018553.01.T01:CDS 40.0%
! ATGGTGATGATTCTGAGAGT+TGG - Chr4:6521182-6521201 None:intergenic 40.0%
! GGGTCCATTGTAAAGCTTTT+GGG + Chr4:6522065-6522084 MsG0480018553.01.T01:CDS 40.0%
! GTTTCTGTGTTACTCAATCC+TGG + Chr4:6522149-6522168 MsG0480018553.01.T01:CDS 40.0%
! GTTTTCCACAAGTGCAGTTA+AGG - Chr4:6521416-6521435 None:intergenic 40.0%
! TACAACACCTTTTGACCTGT+CGG - Chr4:6522378-6522397 None:intergenic 40.0%
! TTTCGATTTTCTCCCTCGAT+AGG + Chr4:6520406-6520425 MsG0480018553.01.T01:intron 40.0%
!! ATCCTTAACTTGTGCCCTTA+GGG + Chr4:6520839-6520858 MsG0480018553.01.T01:intron 40.0%
!! ATCGAAAAGAAGTGTTCGAC+TGG - Chr4:6520393-6520412 None:intergenic 40.0%
!! CATGTTAACTTGTGCCCTAA+GGG - Chr4:6520856-6520875 None:intergenic 40.0%
!! TATTGATGGTGGCTAAAAGG+CGG - Chr4:6521140-6521159 None:intergenic 40.0%
!! TCATGTTAACTTGTGCCCTA+AGG - Chr4:6520857-6520876 None:intergenic 40.0%
!! TGCTATTGATGGTGGCTAAA+AGG - Chr4:6521143-6521162 None:intergenic 40.0%
!! TTTTGTGCTTTGTTGGGCTT+AGG + Chr4:6520253-6520272 MsG0480018553.01.T01:intron 40.0%
AAATTCCATGGCTGTATGCC+AGG - Chr4:6521441-6521460 None:intergenic 45.0%
AAGCAATCTGCACCAACAGT+TGG + Chr4:6521906-6521925 MsG0480018553.01.T01:CDS 45.0%
AATTCCATGGCTGTATGCCA+GGG - Chr4:6521440-6521459 None:intergenic 45.0%
ACACAACATTGGCAAGCAAG+AGG + Chr4:6521611-6521630 MsG0480018553.01.T01:CDS 45.0%
ACTGTTGGTGCAGATTGCTT+AGG - Chr4:6521906-6521925 None:intergenic 45.0%
AGCTTCCTATCTCTTCCACT+TGG + Chr4:6521105-6521124 MsG0480018553.01.T01:CDS 45.0%
AGCTTTACAATGGACCCGAA+TGG - Chr4:6522062-6522081 None:intergenic 45.0%
ATTTGTGAGAGGCTCGTTAG+TGG - Chr4:6521844-6521863 None:intergenic 45.0%
CAATGCCCTAAAACCCTAGA+TGG - Chr4:6520930-6520949 None:intergenic 45.0%
CAGTTTCAAAGCATGGGCTT+GGG + Chr4:6518574-6518593 MsG0480018553.01.T01:CDS 45.0%
CATCGTCTGAATTGAGGTCT+TGG - Chr4:6521239-6521258 None:intergenic 45.0%
CCCTCAGAATCCAAATTCCA+TGG - Chr4:6521453-6521472 None:intergenic 45.0%
CGAAACCTTAACTGCACTTG+TGG + Chr4:6521408-6521427 MsG0480018553.01.T01:CDS 45.0%
CGGCAAGGGTTATGAGTTAT+TGG - Chr4:6519649-6519668 None:intergenic 45.0%
GACATACTTGCAGCTGTTGA+AGG + Chr4:6521548-6521567 MsG0480018553.01.T01:CDS 45.0%
GCCATGGAATTTGGATTCTG+AGG + Chr4:6521449-6521468 MsG0480018553.01.T01:CDS 45.0%
GCTTTCTTACCATGCCATTC+GGG + Chr4:6522045-6522064 MsG0480018553.01.T01:CDS 45.0%
GGTTTGGAAAACCAACCTCT+AGG - Chr4:6522181-6522200 None:intergenic 45.0%
GTCTGAATTGAGGTCTTGGA+TGG - Chr4:6521235-6521254 None:intergenic 45.0%
TAGTGTGGCTGAAACGTTTC+TGG + Chr4:6521488-6521507 MsG0480018553.01.T01:CDS 45.0%
TATATGATACCGAGTGGACC+GGG - Chr4:6520052-6520071 None:intergenic 45.0%
TCAGTTTCAAAGCATGGGCT+TGG + Chr4:6518573-6518592 MsG0480018553.01.T01:CDS 45.0%
TCTTGATCCCTCTTTCGCTT+TGG - Chr4:6522260-6522279 None:intergenic 45.0%
TGCAGCTGTTGAAGGAATTC+GGG + Chr4:6521556-6521575 MsG0480018553.01.T01:CDS 45.0%
TGGCATACAGCCATGGAATT+TGG + Chr4:6521440-6521459 MsG0480018553.01.T01:CDS 45.0%
TTGGTGCAGATTGCTTAGGT+GGG - Chr4:6521902-6521921 None:intergenic 45.0%
TTGTTCGTGTTGAGAAGCCA+TGG - Chr4:6520983-6521002 None:intergenic 45.0%
! ACAACACCTTTTGACCTGTC+GGG - Chr4:6522377-6522396 None:intergenic 45.0%
! ATTTACACTGGCTAGTGGAC+TGG + Chr4:6522668-6522687 MsG0480018553.01.T01:CDS 45.0%
! CAAGGCATTACTCCAACTGT+TGG - Chr4:6521921-6521940 None:intergenic 45.0%
! CGGGTCCATTGTAAAGCTTT+TGG + Chr4:6522064-6522083 MsG0480018553.01.T01:CDS 45.0%
! TCACCGATTACTCATCAACC+CGG + Chr4:6520031-6520050 MsG0480018553.01.T01:intron 45.0%
! TTGGGACCTAACTCTTTTGC+TGG + Chr4:6522083-6522102 MsG0480018553.01.T01:CDS 45.0%
!! AGAAGTGTTCGACTGGAAGA+AGG - Chr4:6520386-6520405 None:intergenic 45.0%
!! AGGTGGGTTGTCTTTGTTCT+TGG - Chr4:6521886-6521905 None:intergenic 45.0%
!! GACAGGTCAAAAGGTGTTGT+AGG + Chr4:6522377-6522396 MsG0480018553.01.T01:CDS 45.0%
!! GATAAGCATTGGTGAAGCTG+AGG + Chr4:6522526-6522545 MsG0480018553.01.T01:CDS 45.0%
!! GATCCTTAACTTGTGCCCTT+AGG + Chr4:6520838-6520857 MsG0480018553.01.T01:intron 45.0%
!! GGAATGTTGAAGGGTTGGTT+TGG - Chr4:6522197-6522216 None:intergenic 45.0%
!! GTTACATCTAAGGGTGTTCG+CGG + Chr4:6518967-6518986 MsG0480018553.01.T01:CDS 45.0%
!! TTTACACTGGCTAGTGGACT+GGG + Chr4:6522669-6522688 MsG0480018553.01.T01:CDS 45.0%
!!! GTGGAGGGAGGGTTTTAAAT+AGG - Chr4:6520344-6520363 None:intergenic 45.0%
!!! TACATTTTTTTTTTAAAAAA+AGG + Chr4:6518859-6518878 MsG0480018553.01.T01:intron 5.0%
AGGAACGCCAAAGCGAAAGA+GGG + Chr4:6522250-6522269 MsG0480018553.01.T01:CDS 50.0%
AGTGTTCGACTGGAAGAAGG+AGG - Chr4:6520383-6520402 None:intergenic 50.0%
ATTCACAACCCAACGCGTAC+GGG - Chr4:6518678-6518697 None:intergenic 50.0%
ATTCCATGGCTGTATGCCAG+GGG - Chr4:6521439-6521458 None:intergenic 50.0%
CAATCCTGGTATACCCCTAG+AGG + Chr4:6522163-6522182 MsG0480018553.01.T01:CDS 50.0%
CACGAGGAATGTTGAAGGGT+TGG - Chr4:6522202-6522221 None:intergenic 50.0%
CATTCACAACCCAACGCGTA+CGG - Chr4:6518679-6518698 None:intergenic 50.0%
GAGAGGCTCGTTAGTGGTTA+AGG - Chr4:6521838-6521857 None:intergenic 50.0%
GGTCTTGGATGGTTTCGTAG+AGG - Chr4:6521224-6521243 None:intergenic 50.0%
GTTGGTGCAGATTGCTTAGG+TGG - Chr4:6521903-6521922 None:intergenic 50.0%
TAAGCTGGCTGTTCTACACG+AGG - Chr4:6522218-6522237 None:intergenic 50.0%
TACAATGGACCCGAATGGCA+TGG - Chr4:6522057-6522076 None:intergenic 50.0%
TAGGAACGCCAAAGCGAAAG+AGG + Chr4:6522249-6522268 MsG0480018553.01.T01:CDS 50.0%
TAGTTATCCGAGGAGGGGAA+AGG - Chr4:6519951-6519970 None:intergenic 50.0%
TCTGTTTCCTTTCCCCTCCT+CGG + Chr4:6519941-6519960 MsG0480018553.01.T01:intron 50.0%
TCTTGGGTCTAGTGCCATCA+AGG - Chr4:6522351-6522370 None:intergenic 50.0%
TGGATCTGCAACTCTCTTGG+CGG + Chr4:6518537-6518556 MsG0480018553.01.T01:CDS 50.0%
TGTGAATGTTGTGGTTGCCG+CGG - Chr4:6520113-6520132 None:intergenic 50.0%
! AACACCTTTTGACCTGTCGG+GGG - Chr4:6522375-6522394 None:intergenic 50.0%
! ACTCATAACCCTTGCCGCTT+TGG + Chr4:6519652-6519671 MsG0480018553.01.T01:intron 50.0%
! CAACACCTTTTGACCTGTCG+GGG - Chr4:6522376-6522395 None:intergenic 50.0%
! GCATTGGTGAAGCTGAGGTA+AGG + Chr4:6522531-6522550 MsG0480018553.01.T01:intron 50.0%
! TGCCCTAAGGGCACAAGTTA+AGG - Chr4:6520844-6520863 None:intergenic 50.0%
! TGGTGCCAAGTGGAAGAGAT+AGG - Chr4:6521113-6521132 None:intergenic 50.0%
!! CTCATAACCCTTGCCGCTTT+GGG + Chr4:6519653-6519672 MsG0480018553.01.T01:intron 50.0%
!! GGACCGGGTTGATGAGTAAT+CGG - Chr4:6520037-6520056 None:intergenic 50.0%
!! TCTCTCACTGACTTGAGCGT+TGG + Chr4:6519902-6519921 MsG0480018553.01.T01:intron 50.0%
ACTCATCAACCCGGTCCACT+CGG + Chr4:6520040-6520059 MsG0480018553.01.T01:intron 55.0%
AGATCCCCCGACAGGTCAAA+AGG + Chr4:6522368-6522387 MsG0480018553.01.T01:CDS 55.0%
ATAACTACCCGCCATCGCAC+TGG + Chr4:6519964-6519983 MsG0480018553.01.T01:intron 55.0%
CCTGGTATACCCCTAGAGGT+TGG + Chr4:6522167-6522186 MsG0480018553.01.T01:CDS 55.0%
GAAGTAGCTCTCCAGTGCGA+TGG - Chr4:6519978-6519997 None:intergenic 55.0%
GGTGGCTAAAAGGCGGACAA+TGG - Chr4:6521133-6521152 None:intergenic 55.0%
GTTTCACTCCCGTACGCGTT+GGG + Chr4:6518667-6518686 MsG0480018553.01.T01:intron 55.0%
TGCACTTGTGGAAAACCCCC+TGG + Chr4:6521420-6521439 MsG0480018553.01.T01:CDS 55.0%
TTCCATGGCTGTATGCCAGG+GGG - Chr4:6521438-6521457 None:intergenic 55.0%
TTGACCTGTCGGGGGATCTT+GGG - Chr4:6522367-6522386 None:intergenic 55.0%
TTTGACCTGTCGGGGGATCT+TGG - Chr4:6522368-6522387 None:intergenic 55.0%
! CCAACCTCTAGGGGTATACC+AGG - Chr4:6522170-6522189 None:intergenic 55.0%
! CGTACGCGTTGGGTTGTGAA+TGG + Chr4:6518677-6518696 MsG0480018553.01.T01:intron 55.0%
! GTTCGCGGTCTGGTTTGAGT+TGG + Chr4:6518982-6519001 MsG0480018553.01.T01:intron 55.0%
!! ACTGGCTAGTGGACTGGGTT+TGG + Chr4:6522674-6522693 MsG0480018553.01.T01:CDS 55.0%
!! ATAACCCTTGCCGCTTTGGG+CGG + Chr4:6519656-6519675 MsG0480018553.01.T01:intron 55.0%
!! ATCTAAGGGTGTTCGCGGTC+TGG + Chr4:6518972-6518991 MsG0480018553.01.T01:CDS 55.0%
AACCCCCTGGCATACAGCCA+TGG + Chr4:6521433-6521452 MsG0480018553.01.T01:CDS 60.0%
GCGGGTAGTTATCCGAGGAG+GGG - Chr4:6519956-6519975 None:intergenic 60.0%
GGCGGGTAGTTATCCGAGGA+GGG - Chr4:6519957-6519976 None:intergenic 60.0%
GGTTTCACTCCCGTACGCGT+TGG + Chr4:6518666-6518685 MsG0480018553.01.T01:intron 60.0%
GTAGCTCTCCAGTGCGATGG+CGG - Chr4:6519975-6519994 None:intergenic 60.0%
GTCCTATGTCCCGCCCAAAG+CGG - Chr4:6519669-6519688 None:intergenic 60.0%
TAGACCCAAGATCCCCCGAC+AGG + Chr4:6522360-6522379 MsG0480018553.01.T01:CDS 60.0%
TAGCTCTCCAGTGCGATGGC+GGG - Chr4:6519974-6519993 None:intergenic 60.0%
! AGGCGGACAATGGTGCCAAG+TGG - Chr4:6521123-6521142 None:intergenic 60.0%
! TGGCGGGTAGTTATCCGAGG+AGG - Chr4:6519958-6519977 None:intergenic 60.0%
!! CGATGGCGGGTAGTTATCCG+AGG - Chr4:6519961-6519980 None:intergenic 60.0%
!! TAACCCTTGCCGCTTTGGGC+GGG + Chr4:6519657-6519676 MsG0480018553.01.T01:intron 60.0%
ATGTCCCGCCCAAAGCGGCA+AGG - Chr4:6519664-6519683 None:intergenic 65.0%
GTTGCTTCGCGCCACACCCA+AGG + Chr4:6519837-6519856 MsG0480018553.01.T01:intron 65.0%
TGTCCCGCCCAAAGCGGCAA+GGG - Chr4:6519663-6519682 None:intergenic 65.0%
!! TGCCGCTTTGGGCGGGACAT+AGG + Chr4:6519664-6519683 MsG0480018553.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr4 gene 6518536 6522764 6518536 ID=MsG0480018553.01;Name=MsG0480018553.01
Chr4 mRNA 6518536 6522764 6518536 ID=MsG0480018553.01.T01;Parent=MsG0480018553.01;Name=MsG0480018553.01.T01;_AED=0.35;_eAED=0.35;_QI=0|0.25|0|0.6|1|1|5|0|586
Chr4 exon 6518536 6518626 6518536 ID=MsG0480018553.01.T01:exon:27278;Parent=MsG0480018553.01.T01
Chr4 exon 6518881 6518993 6518881 ID=MsG0480018553.01.T01:exon:27279;Parent=MsG0480018553.01.T01
Chr4 exon 6520943 6521632 6520943 ID=MsG0480018553.01.T01:exon:27280;Parent=MsG0480018553.01.T01
Chr4 exon 6521813 6522547 6521813 ID=MsG0480018553.01.T01:exon:27281;Parent=MsG0480018553.01.T01
Chr4 exon 6522633 6522764 6522633 ID=MsG0480018553.01.T01:exon:27282;Parent=MsG0480018553.01.T01
Chr4 CDS 6518536 6518626 6518536 ID=MsG0480018553.01.T01:cds;Parent=MsG0480018553.01.T01
Chr4 CDS 6518881 6518993 6518881 ID=MsG0480018553.01.T01:cds;Parent=MsG0480018553.01.T01
Chr4 CDS 6520943 6521632 6520943 ID=MsG0480018553.01.T01:cds;Parent=MsG0480018553.01.T01
Chr4 CDS 6521813 6522547 6521813 ID=MsG0480018553.01.T01:cds;Parent=MsG0480018553.01.T01
Chr4 CDS 6522633 6522764 6522633 ID=MsG0480018553.01.T01:cds;Parent=MsG0480018553.01.T01
Gene Sequence

>MsG0480018553.01.T01

ATGGATCTGCAACTCTCTTGGCGGTCAGATTCAAACTTCAGTTTCAAAGCATGGGCTTGGGTTTATAGAAGATATCTCTTGCTTGATTATGGATATGATGATCAGATTTTTTTGACCAAGAAAAAGGATATGACGATCAGATTTGAAAAATATGTTTTGAGCAACGTTTTGAGCCGTGTTACATCTAAGGGTGTTCGCGGTCTGGGCATTGAGCCAAAAACAACAAGAGTTATACTTGCTGCCATGGCTTCTCAACACGAACAACATGAAGAGTCAAAAACGATTCCCCTGAAAGTGTTAGTAGACAAACAAAGGAACAAAGTTGTTTTTGTGGAAGCAACAAAGGACTTTGTTGACACTCTCTTCAGCTTCCTATCTCTTCCACTTGGCACCATTGTCCGCCTTTTAGCCACCATCAATAGCAACAATGATCAACAAAACCAACTCTCAGAATCATCACCATTCCTTGAAAACATCAAAAACCTCTACGAAACCATCCAAGACCTCAATTCAGACGATGTTTGGTACAACTCTTTCTGCAAACATATGTTGTTGCATCCAAGAAATCCATGTGACTTACTGTGCATGAAGTTGTTCTTGAATATTGATGATACTGATACATCAAATAAATTTTTTGTGTGTCATGCTTGTTCCAAGTTTACTACTTTTCGAAACCTTAACTGCACTTGTGGAAAACCCCCTGGCATACAGCCATGGAATTTGGATTCTGAGGGTCAGTTAAATAGGACTAGTGTGGCTGAAACGTTTCTGGTGTCTGATGATTTGAAGATTGTGCATTGTTCGTATGAGACATACTTGCAGCTGTTGAAGGAATTCGGGTATTCAGACTTGACTCAAATAGAGGAAATCACACACAACATTGGCAAGCAAGAGATATTGAACCTACTCAAGTATACCTTAACCACTAACGAGCCTCTCACAAATACAATCTTGGGATGTAGCTCCAAGAACAAAGACAACCCACCTAAGCAATCTGCACCAACAGTTGGAGTAATGCCTTGCACCAATAACAGAAGTAAAATGGATGTTAAGGTAGTGCAAAGTAAATCTCAGAAAAAGATGATCTTTGTAGAAGCCAACGGAGATTTTGTTGACTTCATTTTTAGCTTTCTTACCATGCCATTCGGGTCCATTGTAAAGCTTTTGGGACCTAACTCTTTTGCTGGATGTGTTGGTAATTTGTACAATAGTGTGAAGAACTTGGATCCCGTTTCTGTGTTACTCAATCCTGGTATACCCCTAGAGGTTGGTTTTCCAAACCAACCCTTCAACATTCCTCGTGTAGAACAGCCAGCTTATTATTTTGGCTTAGGAACGCCAAAGCGAAAGAGGGATCAAGACAAGTCCAATTATTATACAAAGGGAGGAGTGATTTCTAAGTTACGTGAATCAATTATAGGTCCGAAATCCTTGATGGCACTAGACCCAAGATCCCCCGACAGGTCAAAAGGTGTTGTAGGATTTGTGAAGAAAAATGGATTATATGCTGTTGGAGATGATCTAAAAGTAAAACCACTTTCTGTTTATTCGCGTCTTTCATATTTGAAAGAGTTAAGTCTTCCTCTTGATGATCTTGAAGTGAAGATGATAAGCATTGGTGAAGCTGAGGCTTTGAGATTCCTTGAAGCATTCTTGACATCAAAATTTACACTGGCTAGTGGACTGGGTTTGGATGTGCATAAAAAAGAATTCACTTCTTTGAAAGTGCCTAAACAAGAATCAAATTTGACATCACAGTAA
Protein sequence

>MsG0480018553.01.T01

MDLQLSWRSDSNFSFKAWAWVYRRYLLLDYGYDDQIFLTKKKDMTIRFEKYVLSNVLSRVTSKGVRGLGIEPKTTRVILAAMASQHEQHEESKTIPLKVLVDKQRNKVVFVEATKDFVDTLFSFLSLPLGTIVRLLATINSNNDQQNQLSESSPFLENIKNLYETIQDLNSDDVWYNSFCKHMLLHPRNPCDLLCMKLFLNIDDTDTSNKFFVCHACSKFTTFRNLNCTCGKPPGIQPWNLDSEGQLNRTSVAETFLVSDDLKIVHCSYETYLQLLKEFGYSDLTQIEEITHNIGKQEILNLLKYTLTTNEPLTNTILGCSSKNKDNPPKQSAPTVGVMPCTNNRSKMDVKVVQSKSQKKMIFVEANGDFVDFIFSFLTMPFGSIVKLLGPNSFAGCVGNLYNSVKNLDPVSVLLNPGIPLEVGFPNQPFNIPRVEQPAYYFGLGTPKRKRDQDKSNYYTKGGVISKLRESIIGPKSLMALDPRSPDRSKGVVGFVKKNGLYAVGDDLKVKPLSVYSRLSYLKELSLPLDDLEVKMISIGEAEALRFLEAFLTSKFTLASGLGLDVHKKEFTSLKVPKQESNLTSQ*