AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480018736.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480018736.01.T01 MTR_4g017440 83.206 262 44 0 64 325 223 484 6.63e-155 444
MsG0480018736.01.T01 MTR_4g017830 63.197 269 92 3 63 325 216 483 3.79e-109 328
MsG0480018736.01.T01 MTR_4g017830 26.446 242 147 6 100 327 2 226 1.94e-12 68.2
MsG0480018736.01.T01 MTR_4g017470 57.329 307 107 4 27 325 162 452 9.81e-108 323
MsG0480018736.01.T01 MTR_4g019340 61.423 267 76 4 63 325 252 495 5.89e-99 301
MsG0480018736.01.T01 MTR_4g017550 58.741 286 101 7 49 325 178 455 9.18e-93 284
MsG0480018736.01.T01 MTR_4g017410 57.509 273 79 5 63 325 221 466 1.41e-88 274
MsG0480018736.01.T01 MTR_4g017410 27.391 230 133 7 118 325 12 229 3.32e-12 67.4
MsG0480018736.01.T01 MTR_4g017610 47.157 299 122 6 27 325 199 461 2.76e-75 239
MsG0480018736.01.T01 MTR_4g017610 28.384 229 130 6 118 327 16 229 1.14e-11 65.9
MsG0480018736.01.T01 MTR_4g019310 38.550 262 147 6 66 325 222 471 1.92e-44 159
MsG0480018736.01.T01 MTR_4g019310 29.787 188 110 5 115 287 8 188 4.10e-12 67.4
MsG0480018736.01.T01 MTR_7g066350 31.179 263 133 5 63 320 207 426 1.07e-26 109
MsG0480018736.01.T01 MTR_7g066350 28.829 222 132 7 115 325 9 215 2.76e-11 64.7
MsG0480018736.01.T01 MTR_7g066400 33.333 258 129 8 67 317 190 411 1.27e-26 109
MsG0480018736.01.T01 MTR_7g066680 33.333 270 151 10 63 321 34 285 6.36e-25 103
MsG0480018736.01.T01 MTR_4g019350 55.556 90 34 1 173 262 1 84 1.05e-24 96.3
MsG0480018736.01.T01 MTR_1g041315 29.316 307 161 7 21 320 187 444 3.00e-24 103
MsG0480018736.01.T01 MTR_7g066340 28.383 303 158 6 21 320 184 430 3.24e-24 102
MsG0480018736.01.T01 MTR_7g066340 31.019 216 119 8 115 317 12 210 5.50e-14 72.8
MsG0480018736.01.T01 MTR_7g058710 30.855 269 169 7 63 325 202 459 5.14e-24 102
MsG0480018736.01.T01 MTR_7g058710 26.389 216 137 7 115 325 12 210 2.05e-11 65.1
MsG0480018736.01.T01 MTR_7g066430 31.429 280 167 8 60 325 199 467 7.45e-24 102
MsG0480018736.01.T01 MTR_7g066570 31.538 260 161 6 64 317 206 454 1.17e-22 99.0
MsG0480018736.01.T01 MTR_7g066580 31.227 269 167 10 67 325 167 427 5.20e-22 96.3
MsG0480018736.01.T01 MTR_7g066410 31.618 272 163 6 67 325 233 494 2.01e-21 95.1
MsG0480018736.01.T01 MTR_7g066260 32.576 264 125 10 64 317 216 436 4.29e-20 91.3
MsG0480018736.01.T01 MTR_7g066260 32.000 225 127 11 113 325 13 223 3.42e-12 67.4
MsG0480018736.01.T01 MTR_7g063900 28.244 262 170 5 63 317 206 456 1.74e-19 89.4
MsG0480018736.01.T01 MTR_7g063900 36.190 105 58 3 115 211 10 113 7.29e-12 66.2
MsG0480018736.01.T01 MTR_7g066310 30.841 214 104 4 115 325 193 365 4.48e-18 84.7
MsG0480018736.01.T01 MTR_7g066310 32.484 157 89 5 115 257 7 160 1.12e-11 65.5
MsG0480018736.01.T01 MTR_7g012680 30.078 256 145 7 66 317 194 419 1.34e-17 83.6
MsG0480018736.01.T01 MTR_7g066280 30.222 225 135 5 118 325 153 372 1.88e-17 82.8
MsG0480018736.01.T01 MTR_8g445860 27.500 240 121 7 111 325 9 220 8.19e-17 79.0
MsG0480018736.01.T01 MTR_7g062300 26.829 287 182 9 44 325 192 455 8.77e-17 81.3
MsG0480018736.01.T01 MTR_7g062300 33.854 192 95 8 110 288 7 179 8.85e-15 75.1
MsG0480018736.01.T01 MTR_7g063660 29.457 258 164 7 63 317 203 445 3.61e-16 79.3
MsG0480018736.01.T01 MTR_7g063660 37.963 108 60 2 115 215 9 116 1.43e-14 74.7
MsG0480018736.01.T01 MTR_7g062280 27.273 286 184 8 44 325 202 467 4.65e-16 79.0
MsG0480018736.01.T01 MTR_7g062280 34.483 174 94 6 128 288 23 189 4.09e-12 67.0
MsG0480018736.01.T01 MTR_7g063890 29.008 262 168 6 63 317 222 472 1.21e-15 77.8
MsG0480018736.01.T01 MTR_7g063890 29.944 177 98 7 118 285 30 189 2.09e-11 65.1
MsG0480018736.01.T01 MTR_7g066290 38.776 147 87 1 63 206 215 361 3.80e-15 76.3
MsG0480018736.01.T01 MTR_1g115450 41.176 85 48 1 111 193 3 87 5.36e-15 71.6
MsG0480018736.01.T01 MTR_7g058700 39.259 135 58 4 67 198 725 838 7.85e-15 75.9
MsG0480018736.01.T01 MTR_7g063820 37.719 114 63 3 116 223 11 122 1.28e-14 74.7
MsG0480018736.01.T01 MTR_0150s0030 35.849 106 59 3 110 212 3 102 2.98e-14 70.9
MsG0480018736.01.T01 MTR_7g066360 32.319 263 120 11 63 317 211 423 5.16e-14 72.8
MsG0480018736.01.T01 MTR_8g445910 36.792 106 58 3 110 212 3 102 7.36e-14 70.9
MsG0480018736.01.T01 MTR_3g065200 31.683 202 111 6 128 325 225 403 1.41e-13 71.6
MsG0480018736.01.T01 MTR_7g063830 31.250 176 108 3 63 232 206 374 1.55e-13 71.2
MsG0480018736.01.T01 MTR_1g115455 38.372 86 51 1 110 193 4 89 2.76e-13 68.9
MsG0480018736.01.T01 MTR_8g044880 36.792 106 58 3 110 212 3 102 5.86e-13 68.6
MsG0480018736.01.T01 MTR_7g063840 25.660 265 176 7 63 325 204 449 1.02e-12 68.9
MsG0480018736.01.T01 MTR_0150s0010 39.535 86 50 1 110 193 5 90 2.86e-12 65.9
MsG0480018736.01.T01 MTR_7g063920 26.459 257 160 6 65 317 173 404 3.63e-12 67.4
MsG0480018736.01.T01 MTR_7g063920 38.182 110 59 3 110 211 6 114 1.96e-11 65.1
MsG0480018736.01.T01 MTR_7g063880 35.345 116 64 4 110 217 6 118 4.74e-12 67.0
MsG0480018736.01.T01 MTR_7g063880 25.940 266 167 7 63 325 206 444 1.26e-11 65.5
MsG0480018736.01.T01 MTR_8g445920 40.299 67 40 0 110 176 5 71 1.93e-11 60.5
MsG0480018736.01.T01 MTR_8g044890 40.299 67 40 0 110 176 5 71 1.93e-11 60.5
MsG0480018736.01.T01 MTR_1g115470 36.047 86 53 1 111 194 2 87 5.14e-11 63.5
MsG0480018736.01.T01 MTR_7g066480 28.571 231 127 10 108 325 13 218 9.89e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480018736.01.T01 AT5G01130 26.994 326 184 11 6 325 149 426 1.62e-21 95.1
MsG0480018736.01.T01 AT5G01120 31.022 274 159 9 65 325 215 471 3.10e-19 88.6
MsG0480018736.01.T01 AT5G01140 30.882 272 146 12 66 325 192 433 1.62e-18 86.3
MsG0480018736.01.T01 AT3G09140 27.907 301 181 11 37 325 199 475 4.01e-16 79.3
MsG0480018736.01.T01 AT3G09140 28.846 208 130 8 110 302 4 208 1.65e-13 71.6
MsG0480018736.01.T01 AT3G09140 28.364 275 162 10 63 325 252 503 1.31e-15 77.8
MsG0480018736.01.T01 AT3G09140 28.846 208 130 8 110 302 4 208 1.97e-13 71.2
MsG0480018736.01.T01 AT5G43240 29.181 281 156 10 65 325 74 331 1.54e-14 73.9
MsG0480018736.01.T01 AT5G43240 28.076 317 169 12 45 325 182 475 3.40e-14 73.6
MsG0480018736.01.T01 AT5G43240 29.469 207 110 8 116 302 10 200 8.86e-12 66.2
MsG0480018736.01.T01 AT5G43240 28.076 317 169 12 45 325 182 475 3.40e-14 73.6
MsG0480018736.01.T01 AT5G43240 29.469 207 110 8 116 302 10 200 8.86e-12 66.2
MsG0480018736.01.T01 AT5G43240 28.076 317 169 12 45 325 182 475 3.40e-14 73.6
MsG0480018736.01.T01 AT5G43240 29.469 207 110 8 116 302 10 200 8.86e-12 66.2
MsG0480018736.01.T01 AT5G01150 27.372 274 161 9 66 325 212 461 6.53e-13 69.7
MsG0480018736.01.T01 AT5G37320 28.253 269 153 11 66 325 224 461 2.31e-11 65.1
MsG0480018736.01.T01 AT3G09120 27.982 218 144 5 115 325 6 217 6.45e-11 62.8

Find 88 sgRNAs with CRISPR-Local

Find 166 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGACAAGTTGGGAGATTT+TGG 0.140906 4:+9124503 None:intergenic
CCTGGCGCAGCACCACATTT+TGG 0.210743 4:-9124707 MsG0480018736.01.T01:CDS
ACCATCTGAAAGCTTTAAAA+TGG 0.212595 4:+9124823 None:intergenic
GACAAAGAGACCTCGGAATT+TGG 0.216618 4:-9126026 MsG0480018736.01.T01:CDS
CACAAGTGGCGGCACTAAAA+TGG 0.259934 4:-9124951 MsG0480018736.01.T01:CDS
CGTAGCAAAAGTGTACAATT+TGG 0.285675 4:-9126509 MsG0480018736.01.T01:CDS
AGGCAGGTTGCCTTTGTACT+TGG 0.329588 4:+9125009 None:intergenic
AGCTTCCTTACCATGCCATT+AGG 0.332201 4:-9124848 MsG0480018736.01.T01:CDS
TTCAAAATTGTATTTGTCAT+AGG 0.339563 4:+9125040 None:intergenic
TGTCAGACGCTCCTCCAAAT+TGG 0.345543 4:-9126567 MsG0480018736.01.T01:CDS
GCTTCCTTACCATGCCATTA+GGG 0.353748 4:-9124847 MsG0480018736.01.T01:CDS
CTCTAACGGCTGATGAAGAT+TGG 0.361391 4:+9124984 None:intergenic
TCAGATGGTAACTCGTTTGC+TGG 0.365227 4:-9124809 MsG0480018736.01.T01:CDS
GTTGCGGGCGGTCGTAAATC+AGG 0.366748 4:+9124659 None:intergenic
GAATTTGGATTCCGAGGGTC+AGG 0.369351 4:-9126011 MsG0480018736.01.T01:CDS
CCGCCCGCAACATATTATTA+TGG 0.379537 4:-9124647 MsG0480018736.01.T01:CDS
GGAATGTTGAGGGGCTGGTT+TGG 0.384748 4:+9124680 None:intergenic
CTCATCGTAGCCCGATTTGA+TGG 0.385925 4:+9126486 None:intergenic
TGTCCCATCGTGCTCCAATT+TGG 0.391113 4:+9126553 None:intergenic
TACAATTTGGCCATCAAATC+GGG 0.401973 4:-9126496 MsG0480018736.01.T01:CDS
AACTCGTTTGCTGGATGTAT+TGG 0.424872 4:-9124800 MsG0480018736.01.T01:CDS
AAATTCCGAGGTCTCTTTGT+CGG 0.432465 4:+9126028 None:intergenic
GTACAATTTGGCCATCAAAT+CGG 0.435648 4:-9126497 MsG0480018736.01.T01:CDS
CCAAAATGTGGTGCTGCGCC+AGG 0.440390 4:+9124707 None:intergenic
GTACCATAATAATATGTTGC+GGG 0.440914 4:+9124644 None:intergenic
CTCCACTTCAAGATCATCAA+TGG 0.442551 4:+9124364 None:intergenic
CGCACTGTGTTACTCAATCC+TGG 0.461909 4:-9124725 MsG0480018736.01.T01:CDS
GATAAGCATTGGTGAATTTG+AGG 0.462994 4:-9124339 MsG0480018736.01.T01:CDS
CGGCACTAAAATGGATGTTA+AGG 0.464791 4:-9124942 MsG0480018736.01.T01:CDS
GTGCAGAGACTAGCATTGTA+TGG 0.467656 4:-9124461 MsG0480018736.01.T01:CDS
CCGCCTTCCCTTGACAAGTT+GGG 0.467668 4:+9124494 None:intergenic
AGACTAGCATTGTATGGTAT+AGG 0.468200 4:-9124455 MsG0480018736.01.T01:CDS
GTACAAGAGTGTGGAGAACT+TGG 0.471755 4:-9124771 MsG0480018736.01.T01:CDS
AATCAGGAATGTTGAGGGGC+TGG 0.489501 4:+9124675 None:intergenic
AGCTTTAAAATGGACCCTAA+TGG 0.492701 4:+9124833 None:intergenic
ACCGCCTTCCCTTGACAAGT+TGG 0.507948 4:+9124493 None:intergenic
AGGTTAAGCTATACTTGAGT+AGG 0.508695 4:+9125071 None:intergenic
ACCTCGGAATTTGGATTCCG+AGG 0.510244 4:-9126017 MsG0480018736.01.T01:CDS
CCCATCGTGCTCCAATTTGG+AGG 0.521054 4:+9126556 None:intergenic
CAAAATCTCCCAACTTGTCA+AGG 0.521464 4:-9124502 MsG0480018736.01.T01:CDS
TTGTCAAGGGAAGGCGGTGT+GGG 0.525762 4:-9124488 MsG0480018736.01.T01:CDS
CCTCCAAATTGGAGCACGAT+GGG 0.526231 4:-9126556 MsG0480018736.01.T01:CDS
TACGTTTGAAGTAAAGATAG+AGG 0.528667 4:-9124588 MsG0480018736.01.T01:CDS
GGTAATAGTACTAGTGTGGA+TGG 0.536993 4:-9125989 MsG0480018736.01.T01:CDS
TCCACTTCAAGATCATCAAT+GGG 0.538387 4:+9124365 None:intergenic
CTGATGAAGATTGGTTAGGC+AGG 0.539982 4:+9124993 None:intergenic
ACGGCTGATGAAGATTGGTT+AGG 0.542485 4:+9124989 None:intergenic
TCGTAAATCAGGAATGTTGA+GGG 0.544479 4:+9124670 None:intergenic
ATAATTCTTTCAAATATACA+AGG 0.564110 4:+9124393 None:intergenic
CAAATCGGGCTACGATGAGA+AGG 0.569509 4:-9126482 MsG0480018736.01.T01:CDS
TCCCATTGATGATCTTGAAG+TGG 0.570161 4:-9124366 MsG0480018736.01.T01:CDS
CTTGTCAAGGGAAGGCGGTG+TGG 0.575577 4:-9124489 MsG0480018736.01.T01:CDS
AGAGTAAAACCTTGCACAAG+TGG 0.576824 4:-9124965 MsG0480018736.01.T01:CDS
TGGACCCTAATGGCATGGTA+AGG 0.578120 4:+9124843 None:intergenic
TCAGGGTAATAGTACTAGTG+TGG 0.581620 4:-9125993 MsG0480018736.01.T01:CDS
ATTTGGAGGAGCGTCTGACA+TGG 0.584953 4:+9126570 None:intergenic
TTAGTGCCGCCACTTGTGCA+AGG 0.589354 4:+9124956 None:intergenic
TGGCAATTTGTACAAGAGTG+TGG 0.591892 4:-9124780 MsG0480018736.01.T01:CDS
CCTCGGAATTTGGATTCCGA+GGG 0.592288 4:-9126016 MsG0480018736.01.T01:CDS
AGTACTATTACCCTGACCCT+CGG 0.595128 4:+9126000 None:intergenic
TAAAATGGACCCTAATGGCA+TGG 0.595393 4:+9124838 None:intergenic
TTTGAAGTAAAGATAGAGGG+AGG 0.598835 4:-9124584 MsG0480018736.01.T01:CDS
AAAATCTCCCAACTTGTCAA+GGG 0.599820 4:-9124501 MsG0480018736.01.T01:CDS
TCTCCCAACTTGTCAAGGGA+AGG 0.600220 4:-9124497 MsG0480018736.01.T01:CDS
GCATTGGTGAATTTGAGGTA+TGG 0.605452 4:-9124334 MsG0480018736.01.T01:CDS
GTCGTAAATCAGGAATGTTG+AGG 0.607776 4:+9124669 None:intergenic
GAAGTCAACAAAATCACCGT+TGG 0.609986 4:+9124877 None:intergenic
CTTCAAGATCATCAATGGGA+AGG 0.610347 4:+9124369 None:intergenic
TCCTCCAAATTGGAGCACGA+TGG 0.615825 4:-9126557 MsG0480018736.01.T01:CDS
TTGGTGAATTTGAGGTATGG+TGG 0.617870 4:-9124331 MsG0480018736.01.T01:CDS
CGGGCTACGATGAGAAGGAT+CGG 0.618419 4:-9126477 MsG0480018736.01.T01:CDS
CCCAACTTGTCAAGGGAAGG+CGG 0.621164 4:-9124494 MsG0480018736.01.T01:CDS
CCCTCGGAATCCAAATTCCG+AGG 0.624583 4:+9126016 None:intergenic
GGAGCACGATGGGACACCAT+CGG 0.629252 4:-9126546 MsG0480018736.01.T01:CDS
AAAAGTAGCTCCAAGTACAA+AGG 0.632301 4:-9125019 MsG0480018736.01.T01:CDS
ACGTTTGAAGTAAAGATAGA+GGG 0.638925 4:-9124587 MsG0480018736.01.T01:CDS
AATTTGGATTCCGAGGGTCA+GGG 0.646453 4:-9126010 MsG0480018736.01.T01:CDS
CATTGATGATCTTGAAGTGG+AGG 0.646684 4:-9124363 MsG0480018736.01.T01:CDS
ATTTGTCATAGGCTCGTGAG+AGG 0.647045 4:+9125051 None:intergenic
ATCATCTTTGTAGAAGCCAA+CGG 0.648266 4:-9124893 MsG0480018736.01.T01:CDS
GTAAAACCTTGCACAAGTGG+CGG 0.651940 4:-9124962 MsG0480018736.01.T01:CDS
GAAAACCGACAAAGAGACCT+CGG 0.653928 4:-9126033 MsG0480018736.01.T01:CDS
GAAGTGGAGGTGATAAGCAT+TGG 0.663142 4:-9124350 MsG0480018736.01.T01:CDS
GTGGATGGATGCTCAAAATG+AGG 0.666637 4:-9125974 MsG0480018736.01.T01:intron
TGTACCATAATAATATGTTG+CGG 0.667161 4:+9124643 None:intergenic
TGGTTTGGACAACCAAAATG+TGG 0.677088 4:+9124695 None:intergenic
CGTAAATCAGGAATGTTGAG+GGG 0.681609 4:+9124671 None:intergenic
CCATAATAATATGTTGCGGG+CGG 0.691477 4:+9124647 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATAATTTGAAGAAAA+AGG - Chr4:9125597-9125616 MsG0480018736.01.T01:intron 10.0%
!!! TGTTTATTTTACAAAAATAA+AGG + Chr4:9125248-9125267 None:intergenic 10.0%
!! ATAATTCTTTCAAATATACA+AGG + Chr4:9126491-9126510 None:intergenic 15.0%
!! TTAAAATATAGGGAAAAATT+CGG + Chr4:9125345-9125364 None:intergenic 15.0%
!!! ACATTTAATTGATATTTTGA+AGG - Chr4:9125388-9125407 MsG0480018736.01.T01:intron 15.0%
!!! CATTTAATTGATATTTTGAA+GGG - Chr4:9125389-9125408 MsG0480018736.01.T01:intron 15.0%
!! AAAAAAAAACTAGATGAAAG+AGG + Chr4:9125708-9125727 None:intergenic 20.0%
!! AATTAATAAAATGTGCAACA+TGG + Chr4:9125624-9125643 None:intergenic 20.0%
!! ATATGAAAGTAAAAGGTTAT+GGG + Chr4:9125154-9125173 None:intergenic 20.0%
!! TAAAATATAGGGAAAAATTC+GGG + Chr4:9125344-9125363 None:intergenic 20.0%
!! TAAGATCATATGAAAGTAAA+AGG + Chr4:9125161-9125180 None:intergenic 20.0%
!! TTCAAAATTGTATTTGTCAT+AGG + Chr4:9125844-9125863 None:intergenic 20.0%
!!! TATTGTCATTTGTTTACATT+GGG + Chr4:9125475-9125494 None:intergenic 20.0%
!!! TGTTGCACATTTTATTAATT+TGG - Chr4:9125624-9125643 MsG0480018736.01.T01:intron 20.0%
!!! TTATTGTCATTTGTTTACAT+TGG + Chr4:9125476-9125495 None:intergenic 20.0%
!!! TTATTGTCATTTGTTTGTTT+TGG + Chr4:9125532-9125551 None:intergenic 20.0%
! AAACATTATAGAATAAGCAG+AGG - Chr4:9125563-9125582 MsG0480018736.01.T01:intron 25.0%
! AAATATCAATTAAATGTCGC+TGG + Chr4:9125385-9125404 None:intergenic 25.0%
! ACATAACATCAAATGATGTT+TGG - Chr4:9124659-9124678 MsG0480018736.01.T01:CDS 25.0%
! AGAAGAATTGGAAAATTGAT+AGG + Chr4:9125732-9125751 None:intergenic 25.0%
! CAATATTATAATCACAACTG+TGG + Chr4:9125278-9125297 None:intergenic 25.0%
! CATATGAAAGTAAAAGGTTA+TGG + Chr4:9125155-9125174 None:intergenic 25.0%
! TATGAAAGTAAAAGGTTATG+GGG + Chr4:9125153-9125172 None:intergenic 25.0%
! TGTACCATAATAATATGTTG+CGG + Chr4:9126241-9126260 None:intergenic 25.0%
!! ACTTTTGCTACGTAAAAAAT+CGG + Chr4:9124364-9124383 None:intergenic 25.0%
!! CAAGAGTTTTGCATTAAAAA+TGG + Chr4:9126346-9126365 None:intergenic 25.0%
!! TCATCAAAATTGTTCTTTTC+TGG - Chr4:9124451-9124470 MsG0480018736.01.T01:CDS 25.0%
!!! AGAACAATTTTGATGATTCA+TGG + Chr4:9124447-9124466 None:intergenic 25.0%
ACTAACTGATGTATCCTAAA+GGG + Chr4:9125313-9125332 None:intergenic 30.0%
ATGAAAGTAAAAGGTTATGG+GGG + Chr4:9125152-9125171 None:intergenic 30.0%
ATTTGATGTTATGTCTTGGA+CGG + Chr4:9124653-9124672 None:intergenic 30.0%
CATCATTTGATGTTATGTCT+TGG + Chr4:9124657-9124676 None:intergenic 30.0%
GGAAAAAACTTGAAATCCTT+GGG - Chr4:9125645-9125664 MsG0480018736.01.T01:intron 30.0%
GTACCATAATAATATGTTGC+GGG + Chr4:9126240-9126259 None:intergenic 30.0%
TAGTGAACTTGAAACAAGAA+TGG + Chr4:9124801-9124820 None:intergenic 30.0%
TGGAAAAAACTTGAAATCCT+TGG - Chr4:9125644-9125663 MsG0480018736.01.T01:intron 30.0%
TTCAGATTTGACTCAATTAG+AGG - Chr4:9125057-9125076 MsG0480018736.01.T01:CDS 30.0%
! ACGTTTGAAGTAAAGATAGA+GGG - Chr4:9126294-9126313 MsG0480018736.01.T01:intron 30.0%
! AGAAAATGGTTCAACCTTTT+TGG - Chr4:9124940-9124959 MsG0480018736.01.T01:CDS 30.0%
! CAATTTTCCAATTCTTCTCT+TGG - Chr4:9125734-9125753 MsG0480018736.01.T01:intron 30.0%
! GAGGTATTTCTTAGAGAAAA+TGG - Chr4:9124926-9124945 MsG0480018736.01.T01:CDS 30.0%
! TACGTTTGAAGTAAAGATAG+AGG - Chr4:9126293-9126312 MsG0480018736.01.T01:intron 30.0%
! TATTTGAAGTTGTCTAGGAA+TGG + Chr4:9124619-9124638 None:intergenic 30.0%
! TTGGTCATTGTTATTGTTGT+TGG + Chr4:9124566-9124585 None:intergenic 30.0%
!! AATTGATATTTTGAAGGGCA+TGG - Chr4:9125394-9125413 MsG0480018736.01.T01:intron 30.0%
!! ACCATCTGAAAGCTTTAAAA+TGG + Chr4:9126061-9126080 None:intergenic 30.0%
!! AGAGTTGTTGATGTTTTTGT+TGG + Chr4:9124585-9124604 None:intergenic 30.0%
!! ATGTATTTCTAGTTGAGTTC+AGG + Chr4:9124498-9124517 None:intergenic 30.0%
!! TTACATTGGGTTGAAATACA+AGG + Chr4:9125462-9125481 None:intergenic 30.0%
!!! TCCATTTTAAAGCTTTCAGA+TGG - Chr4:9126057-9126076 MsG0480018736.01.T01:intron 30.0%
AAAAGTAGCTCCAAGTACAA+AGG - Chr4:9125862-9125881 MsG0480018736.01.T01:intron 35.0%
AAAATCTCCCAACTTGTCAA+GGG - Chr4:9126380-9126399 MsG0480018736.01.T01:intron 35.0%
AATAACCCAATTCCTTCAAC+AGG + Chr4:9125039-9125058 None:intergenic 35.0%
AGAAAGAGTAGAAACATGCT+AGG - Chr4:9125495-9125514 MsG0480018736.01.T01:intron 35.0%
AGACTAGCATTGTATGGTAT+AGG - Chr4:9126426-9126445 MsG0480018736.01.T01:intron 35.0%
AGGTTAAGCTATACTTGAGT+AGG + Chr4:9125813-9125832 None:intergenic 35.0%
ATCATCTTTGTAGAAGCCAA+CGG - Chr4:9125988-9126007 MsG0480018736.01.T01:CDS 35.0%
CACTAACTGATGTATCCTAA+AGG + Chr4:9125314-9125333 None:intergenic 35.0%
GTACAATTTGGCCATCAAAT+CGG - Chr4:9124384-9124403 MsG0480018736.01.T01:CDS 35.0%
TACAATTTGGCCATCAAATC+GGG - Chr4:9124385-9124404 MsG0480018736.01.T01:CDS 35.0%
TCCACTTCAAGATCATCAAT+GGG + Chr4:9126519-9126538 None:intergenic 35.0%
TCGTAAATCAGGAATGTTGA+GGG + Chr4:9126214-9126233 None:intergenic 35.0%
TTTGAAGATTGTGCCAAGTT+CGG - Chr4:9124993-9125012 MsG0480018736.01.T01:CDS 35.0%
! CGTAGCAAAAGTGTACAATT+TGG - Chr4:9124372-9124391 MsG0480018736.01.T01:CDS 35.0%
! GTCATTGTTATTGTTGTTGG+TGG + Chr4:9124563-9124582 None:intergenic 35.0%
! GTTTTCAACTAGAGCAACAA+AGG + Chr4:9124834-9124853 None:intergenic 35.0%
! TGTGCAAGGTTTTACTCTAA+CGG + Chr4:9125914-9125933 None:intergenic 35.0%
! TTTGAAGTAAAGATAGAGGG+AGG - Chr4:9126297-9126316 MsG0480018736.01.T01:intron 35.0%
!! AGAGGTATTTGAAGTTGTCT+AGG + Chr4:9124624-9124643 None:intergenic 35.0%
!! AGCTTTAAAATGGACCCTAA+TGG + Chr4:9126051-9126070 None:intergenic 35.0%
!! GATAAGCATTGGTGAATTTG+AGG - Chr4:9126542-9126561 MsG0480018736.01.T01:CDS 35.0%
AAATTCCGAGGTCTCTTTGT+CGG + Chr4:9124856-9124875 None:intergenic 40.0%
AACAAATGTTGCTGCATCCT+AGG - Chr4:9124698-9124717 MsG0480018736.01.T01:CDS 40.0%
AATCTCGTCGAACACCAAAA+AGG + Chr4:9124957-9124976 None:intergenic 40.0%
ACTGTGCATGAAGTTGTTCT+TGG - Chr4:9124735-9124754 MsG0480018736.01.T01:CDS 40.0%
ACTTGAAATCCTTGGGTGAA+TGG - Chr4:9125652-9125671 MsG0480018736.01.T01:intron 40.0%
AGAGTAAAACCTTGCACAAG+TGG - Chr4:9125916-9125935 MsG0480018736.01.T01:intron 40.0%
AGCAACATTTGTTTGCAGAC+AGG + Chr4:9124691-9124710 None:intergenic 40.0%
AGTGATTCACATGGATTCCT+AGG + Chr4:9124718-9124737 None:intergenic 40.0%
ATGTTATGTCTTGGACGGTT+TGG + Chr4:9124648-9124667 None:intergenic 40.0%
CAAAATCTCCCAACTTGTCA+AGG - Chr4:9126379-9126398 MsG0480018736.01.T01:intron 40.0%
CCATAATAATATGTTGCGGG+CGG + Chr4:9126237-9126256 None:intergenic 40.0%
CGGCACTAAAATGGATGTTA+AGG - Chr4:9125939-9125958 MsG0480018736.01.T01:intron 40.0%
CGTAAATCAGGAATGTTGAG+GGG + Chr4:9126213-9126232 None:intergenic 40.0%
CTAGTTGAGTTCAGGTGTTT+CGG + Chr4:9124490-9124509 None:intergenic 40.0%
CTCCACTTCAAGATCATCAA+TGG + Chr4:9126520-9126539 None:intergenic 40.0%
CTTCAAGATCATCAATGGGA+AGG + Chr4:9126515-9126534 None:intergenic 40.0%
GAACTAGCCAAGAGAAGAAT+TGG + Chr4:9125744-9125763 None:intergenic 40.0%
GAAGTCAACAAAATCACCGT+TGG + Chr4:9126007-9126026 None:intergenic 40.0%
GAGGAAATCACACACAACAT+TGG - Chr4:9125076-9125095 MsG0480018736.01.T01:CDS 40.0%
GCAACATTTGTTTGCAGACA+GGG + Chr4:9124690-9124709 None:intergenic 40.0%
GGTAATAGTACTAGTGTGGA+TGG - Chr4:9124892-9124911 MsG0480018736.01.T01:CDS 40.0%
GTCGTAAATCAGGAATGTTG+AGG + Chr4:9126215-9126234 None:intergenic 40.0%
TAAAATGGACCCTAATGGCA+TGG + Chr4:9126046-9126065 None:intergenic 40.0%
TAGAAGAAACCATTCACCCA+AGG + Chr4:9125664-9125683 None:intergenic 40.0%
TCAGGGTAATAGTACTAGTG+TGG - Chr4:9124888-9124907 MsG0480018736.01.T01:CDS 40.0%
TGGCAATTTGTACAAGAGTG+TGG - Chr4:9126101-9126120 MsG0480018736.01.T01:intron 40.0%
TTCATGCACAGTGATTCACA+TGG + Chr4:9124727-9124746 None:intergenic 40.0%
! AACTCGTTTGCTGGATGTAT+TGG - Chr4:9126081-9126100 MsG0480018736.01.T01:intron 40.0%
! CATTGATGATCTTGAAGTGG+AGG - Chr4:9126518-9126537 MsG0480018736.01.T01:CDS 40.0%
! GCATTGGTGAATTTGAGGTA+TGG - Chr4:9126547-9126566 MsG0480018736.01.T01:CDS 40.0%
! TCCCATTGATGATCTTGAAG+TGG - Chr4:9126515-9126534 MsG0480018736.01.T01:CDS 40.0%
! TGGTTTGGACAACCAAAATG+TGG + Chr4:9126189-9126208 None:intergenic 40.0%
! TTGGTGAATTTGAGGTATGG+TGG - Chr4:9126550-9126569 MsG0480018736.01.T01:CDS 40.0%
!! AACCGCAACTTTAAAGCATG+AGG + Chr4:9125215-9125234 None:intergenic 40.0%
!! CACCTCATGCTTTAAAGTTG+CGG - Chr4:9125210-9125229 MsG0480018736.01.T01:intron 40.0%
!! CTTGACAAGTTGGGAGATTT+TGG + Chr4:9126381-9126400 None:intergenic 40.0%
!!! TGGTGTTCGACGAGATTTTT+TGG - Chr4:9124960-9124979 MsG0480018736.01.T01:CDS 40.0%
AATTTGGATTCCGAGGGTCA+GGG - Chr4:9124871-9124890 MsG0480018736.01.T01:CDS 45.0%
ACACAACATTGGCAAGCAAG+AGG - Chr4:9125087-9125106 MsG0480018736.01.T01:intron 45.0%
AGCTTCCTTACCATGCCATT+AGG - Chr4:9126033-9126052 MsG0480018736.01.T01:CDS 45.0%
AGTACTATTACCCTGACCCT+CGG + Chr4:9124884-9124903 None:intergenic 45.0%
ATTTGTCATAGGCTCGTGAG+AGG + Chr4:9125833-9125852 None:intergenic 45.0%
CCGCCCGCAACATATTATTA+TGG - Chr4:9126234-9126253 MsG0480018736.01.T01:intron 45.0%
CGTAAAAAATCGGACTCCGA+TGG + Chr4:9124354-9124373 None:intergenic 45.0%
CTCTAACGGCTGATGAAGAT+TGG + Chr4:9125900-9125919 None:intergenic 45.0%
GAAAACCGACAAAGAGACCT+CGG - Chr4:9124848-9124867 MsG0480018736.01.T01:CDS 45.0%
GAAGTGGAGGTGATAAGCAT+TGG - Chr4:9126531-9126550 MsG0480018736.01.T01:CDS 45.0%
GACAAAGAGACCTCGGAATT+TGG - Chr4:9124855-9124874 MsG0480018736.01.T01:CDS 45.0%
GCTTCCTTACCATGCCATTA+GGG - Chr4:9126034-9126053 MsG0480018736.01.T01:CDS 45.0%
GTAAAACCTTGCACAAGTGG+CGG - Chr4:9125919-9125938 MsG0480018736.01.T01:intron 45.0%
GTGCAGAGACTAGCATTGTA+TGG - Chr4:9126420-9126439 MsG0480018736.01.T01:intron 45.0%
GTGGATGGATGCTCAAAATG+AGG - Chr4:9124907-9124926 MsG0480018736.01.T01:CDS 45.0%
TACGTAGTCATAGCCGAACT+TGG + Chr4:9125009-9125028 None:intergenic 45.0%
TCAGATGGTAACTCGTTTGC+TGG - Chr4:9126072-9126091 MsG0480018736.01.T01:intron 45.0%
TGCAGTATGCTTCACCCTTT+AGG - Chr4:9125296-9125315 MsG0480018736.01.T01:intron 45.0%
TTGCGCCTGTTGAAGGAATT+GGG - Chr4:9125031-9125050 MsG0480018736.01.T01:CDS 45.0%
! ACGGCTGATGAAGATTGGTT+AGG + Chr4:9125895-9125914 None:intergenic 45.0%
! CTGATGAAGATTGGTTAGGC+AGG + Chr4:9125891-9125910 None:intergenic 45.0%
! GTACAAGAGTGTGGAGAACT+TGG - Chr4:9126110-9126129 MsG0480018736.01.T01:intron 45.0%
!! GTTGGTGGATTGATGACACT+AGG + Chr4:9124548-9124567 None:intergenic 45.0%
!!! AAATTTGAAATTTAAAATAT+AGG + Chr4:9125356-9125375 None:intergenic 5.0%
!!! AATTTGAAATTTAAAATATA+GGG + Chr4:9125355-9125374 None:intergenic 5.0%
AATCAGGAATGTTGAGGGGC+TGG + Chr4:9126209-9126228 None:intergenic 50.0%
ACCTCGGAATTTGGATTCCG+AGG - Chr4:9124864-9124883 MsG0480018736.01.T01:CDS 50.0%
AGGCAGGTTGCCTTTGTACT+TGG + Chr4:9125875-9125894 None:intergenic 50.0%
CAAATCGGGCTACGATGAGA+AGG - Chr4:9124399-9124418 MsG0480018736.01.T01:CDS 50.0%
CAATTCCTTCAACAGGCGCA+AGG + Chr4:9125032-9125051 None:intergenic 50.0%
CACAAGTGGCGGCACTAAAA+TGG - Chr4:9125930-9125949 MsG0480018736.01.T01:intron 50.0%
CCTCCAAATTGGAGCACGAT+GGG - Chr4:9124325-9124344 MsG0480018736.01.T01:CDS 50.0%
CCTCGGAATTTGGATTCCGA+GGG - Chr4:9124865-9124884 MsG0480018736.01.T01:CDS 50.0%
CTTGCGCCTGTTGAAGGAAT+TGG - Chr4:9125030-9125049 MsG0480018736.01.T01:CDS 50.0%
GAATTTGGATTCCGAGGGTC+AGG - Chr4:9124870-9124889 MsG0480018736.01.T01:CDS 50.0%
TCCTCCAAATTGGAGCACGA+TGG - Chr4:9124324-9124343 MsG0480018736.01.T01:CDS 50.0%
TCTCCCAACTTGTCAAGGGA+AGG - Chr4:9126384-9126403 MsG0480018736.01.T01:intron 50.0%
TGGACCCTAATGGCATGGTA+AGG + Chr4:9126041-9126060 None:intergenic 50.0%
TGTCAGACGCTCCTCCAAAT+TGG - Chr4:9124314-9124333 MsG0480018736.01.T01:CDS 50.0%
TGTCCCATCGTGCTCCAATT+TGG + Chr4:9124331-9124350 None:intergenic 50.0%
! CGCACTGTGTTACTCAATCC+TGG - Chr4:9126156-9126175 MsG0480018736.01.T01:intron 50.0%
! CTCATCGTAGCCCGATTTGA+TGG + Chr4:9124398-9124417 None:intergenic 50.0%
!! TGTCTTGGACGGTTTGGTAG+AGG + Chr4:9124642-9124661 None:intergenic 50.0%
ACCGCCTTCCCTTGACAAGT+TGG + Chr4:9126391-9126410 None:intergenic 55.0%
ACGTACCTTGCGCCTGTTGA+AGG - Chr4:9125024-9125043 MsG0480018736.01.T01:CDS 55.0%
CCCAACTTGTCAAGGGAAGG+CGG - Chr4:9126387-9126406 MsG0480018736.01.T01:intron 55.0%
CCCATCGTGCTCCAATTTGG+AGG + Chr4:9124328-9124347 None:intergenic 55.0%
CCCTCGGAATCCAAATTCCG+AGG + Chr4:9124868-9124887 None:intergenic 55.0%
CCGCCTTCCCTTGACAAGTT+GGG + Chr4:9126390-9126409 None:intergenic 55.0%
CGGGCTACGATGAGAAGGAT+CGG - Chr4:9124404-9124423 MsG0480018736.01.T01:CDS 55.0%
TTAGTGCCGCCACTTGTGCA+AGG + Chr4:9125928-9125947 None:intergenic 55.0%
TTGTCAAGGGAAGGCGGTGT+GGG - Chr4:9126393-9126412 MsG0480018736.01.T01:intron 55.0%
!! GGAATGTTGAGGGGCTGGTT+TGG + Chr4:9126204-9126223 None:intergenic 55.0%
CTTGTCAAGGGAAGGCGGTG+TGG - Chr4:9126392-9126411 MsG0480018736.01.T01:intron 60.0%
GGAGCACGATGGGACACCAT+CGG - Chr4:9124335-9124354 MsG0480018736.01.T01:CDS 60.0%
GTTGCGGGCGGTCGTAAATC+AGG + Chr4:9126225-9126244 None:intergenic 60.0%
! CCTGGCGCAGCACCACATTT+TGG - Chr4:9126174-9126193 MsG0480018736.01.T01:intron 60.0%
!! CCAAAATGTGGTGCTGCGCC+AGG + Chr4:9126177-9126196 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr4 gene 9124313 9126590 9124313 ID=MsG0480018736.01;Name=MsG0480018736.01
Chr4 mRNA 9124313 9126590 9124313 ID=MsG0480018736.01.T01;Parent=MsG0480018736.01;Name=MsG0480018736.01.T01;_AED=0.53;_eAED=0.57;_QI=0|0|0|0.66|1|1|3|0|328
Chr4 exon 9126476 9126590 9126476 ID=MsG0480018736.01.T01:exon:2240;Parent=MsG0480018736.01.T01
Chr4 exon 9125975 9126057 9125975 ID=MsG0480018736.01.T01:exon:2239;Parent=MsG0480018736.01.T01
Chr4 exon 9124313 9125101 9124313 ID=MsG0480018736.01.T01:exon:2238;Parent=MsG0480018736.01.T01
Chr4 CDS 9126476 9126590 9126476 ID=MsG0480018736.01.T01:cds;Parent=MsG0480018736.01.T01
Chr4 CDS 9125975 9126057 9125975 ID=MsG0480018736.01.T01:cds;Parent=MsG0480018736.01.T01
Chr4 CDS 9124313 9125101 9124313 ID=MsG0480018736.01.T01:cds;Parent=MsG0480018736.01.T01
Gene Sequence

>MsG0480018736.01.T01

ATGTCAGACGCTCCTCCAAATTGGAGCACGATGGGACACCATCGGAGTCCGATTTTTTACGTAGCAAAAGTGTACAATTTGGCCATCAAATCGGGCTACGATGAGAAGGATCGGATTGAAAACCGACAAAGAGACCTCGGAATTTGGATTCCGAGGGTCAGGGTAATAGTACTAGTGTGGATGGATGCTCAAAATGAGATATTGAACCTACTCAAGTATAGCTTAACCTCTCACGAGCCTATGACAAATACAATTTTGAAAAGTAGCTCCAAGTACAAAGGCAACCTGCCTAACCAATCTTCATCAGCCGTTAGAGTAAAACCTTGCACAAGTGGCGGCACTAAAATGGATGTTAAGGTAGTTCGAAGTATATCTCAGAAAAAGATCATCTTTGTAGAAGCCAACGGTGATTTTGTTGACTTCATTTTTAGCTTCCTTACCATGCCATTAGGGTCCATTTTAAAGCTTTCAGATGGTAACTCGTTTGCTGGATGTATTGGCAATTTGTACAAGAGTGTGGAGAACTTGGACTCTTCATTGTGTACTGACTCACGCACTGTGTTACTCAATCCTGGCGCAGCACCACATTTTGGTTGTCCAAACCAGCCCCTCAACATTCCTGATTTACGACCGCCCGCAACATATTATTATGGTACATGTGCATCACATAAATCTATTAATAGTACACGTACGTTTGAAGTAAAGATAGAGGGAGGAGTGATTTCTAAGACAAAAGAATCCATTTTTAATGCAAAACTCTTGACTGCACTTGATCCAAAATCTCCCAACTTGTCAAGGGAAGGCGGTGTGGGATTTGTGCAGAGACTAGCATTGTATGGTATAGGAGATGATCTAAAACTAAAATCACTTTCTGCTAATTCTTTCCTTGTATATTTGAAAGAATTATGCCTTCCCATTGATGATCTTGAAGTGGAGGTGATAAGCATTGGTGAATTTGAGGTATGGTGGTTATTATTTTATTACTGA

Protein sequence

>MsG0480018736.01.T01

MSDAPPNWSTMGHHRSPIFYVAKVYNLAIKSGYDEKDRIENRQRDLGIWIPRVRVIVLVWMDAQNEILNLLKYSLTSHEPMTNTILKSSSKYKGNLPNQSSSAVRVKPCTSGGTKMDVKVVRSISQKKIIFVEANGDFVDFIFSFLTMPLGSILKLSDGNSFAGCIGNLYKSVENLDSSLCTDSRTVLLNPGAAPHFGCPNQPLNIPDLRPPATYYYGTCASHKSINSTRTFEVKIEGGVISKTKESIFNAKLLTALDPKSPNLSREGGVGFVQRLALYGIGDDLKLKSLSANSFLVYLKELCLPIDDLEVEVISIGEFEVWWLLFYY*