AlfalfaGEDB | MsG0480018724.01

M. sativa cultivar ZhongmuNo.1 / MsG0480018724.01

KEGG: -
GO: -
PFAM: PF05056

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480018724.01.T01	XP_003604756.1	63.57	409	125	8	1	390	105	508	5.10E-160	469

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480018724.01.T01	G7JQ77	63.570	409	125	8	1	390	105	508	2.43e-160	469

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI

Gene1	Gene2	Type
MsG0480018724.01	MsG0480018553.01	PPI
MsG0480018724.01	MsG0480018736.01	PPI
MsG0480018724.01	MsG0480018744.01	PPI
MsG0480018724.01	MsG0780039038.01	PPI
MsG0480018724.01	MsG0480018721.01	PPI
MsG0480018724.01	MsG0780039008.01	PPI
MsG0480018554.01	MsG0480018724.01	PPI
MsG0480018724.01	MsG0480018867.01	PPI
MsG0480018724.01	MsG0480018751.01	PPI
MsG0480018724.01	MsG0480018550.01	PPI
MsG0480018724.01	MsG0480018760.01	PPI
MsG0480018724.01	MsG0480018763.01	PPI
MsG0480018724.01	MsG0480018551.01	PPI
MsG0480018724.01	MsG0780038994.01	PPI
MsG0480018724.01	MsG0780039016.01	PPI
MsG0480018724.01	MsG0780039026.01	PPI
MsG0480018724.01	MsG0780039039.01	PPI
MsG0480018724.01	MsG0480018720.01	PPI
MsG0480018724.01	MsG0780038878.01	PPI
MsG0780039010.01	MsG0480018724.01	PPI
MsG0480018724.01	MsG0780039034.01	PPI
MsG0480018724.01	MsG0480018747.01	PPI
MsG0480018724.01	MsG0480018857.01	PPI
MsG0780039018.01	MsG0480018724.01	PPI
MsG0480018548.01	MsG0480018724.01	PPI
MsG0480018724.01	MsG0480018728.01	PPI
MsG0480018724.01	MsG0780036389.01	PPI
MsG0480018724.01	MsG0480018558.01	PPI
MsG0480018724.01	MsG0480018861.01	PPI
MsG0480018724.01	MsG0480018545.01	PPI
MsG0480018724.01	MsG0480018748.01	PPI
MsG0480018724.01	MsG0480018739.01	PPI
MsG0480018553.01	MsG0480018724.01	PPI
MsG0480018724.01	MsG0480018860.01	PPI
MsG0480018724.01	MsG0780039063.01	PPI
MsG0480018719.01	MsG0480018724.01	PPI
MsG0480018724.01	MsG0480018784.01	PPI
MsG0480018724.01	MsG0780038997.01	PPI
MsG0480018760.01	MsG0480018724.01	PPI
MsG0480018724.01	MsG0480018719.01	PPI
MsG0480018724.01	MsG0780039009.01	PPI
MsG0480018724.01	MsG0480018735.01	PPI
MsG0480018724.01	MsG0480018548.01	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480018724.01.T01	MTR_4g017440	63.570	409	125	8	1	390	105	508	6.17e-164	469
MsG0480018724.01.T01	MTR_4g017410	63.107	412	111	6	1	390	98	490	2.30e-163	468
MsG0480018724.01.T01	MTR_4g017550	63.131	396	123	7	1	377	77	468	3.12e-158	454
MsG0480018724.01.T01	MTR_4g017830	59.905	419	141	9	1	395	97	512	2.12e-152	441
MsG0480018724.01.T01	MTR_4g017830	30.837	227	119	7	175	377	25	237	7.48e-14	73.6
MsG0480018724.01.T01	MTR_4g019340	59.343	396	117	6	1	372	128	503	4.19e-145	422
MsG0480018724.01.T01	MTR_4g019340	28.571	245	131	7	165	377	41	273	4.87e-12	67.8
MsG0480018724.01.T01	MTR_4g017610	57.106	387	144	5	1	377	100	474	6.09e-140	407
MsG0480018724.01.T01	MTR_4g017610	28.151	238	133	7	165	377	16	240	8.60e-12	67.0
MsG0480018724.01.T01	MTR_4g017470	57.882	406	125	8	1	390	101	476	1.21e-137	402
MsG0480018724.01.T01	MTR_4g019310	37.740	416	220	9	1	390	95	497	1.42e-69	227
MsG0480018724.01.T01	MTR_4g019310	26.471	272	152	8	157	393	3	261	1.05e-12	69.7
MsG0480018724.01.T01	MTR_7g058710	32.117	411	228	11	1	377	79	472	1.71e-49	174
MsG0480018724.01.T01	MTR_7g066430	32.874	435	237	13	1	395	83	502	4.51e-46	165
MsG0480018724.01.T01	MTR_7g066570	34.375	416	221	15	1	388	93	484	7.10e-46	166
MsG0480018724.01.T01	MTR_7g066350	34.104	346	194	9	1	317	88	428	2.78e-45	162
MsG0480018724.01.T01	MTR_7g066340	31.407	398	212	10	1	377	91	448	3.78e-45	162
MsG0480018724.01.T01	MTR_7g066340	28.390	236	133	8	161	375	11	231	5.55e-15	76.6
MsG0480018724.01.T01	MTR_7g066400	31.186	388	226	8	1	377	75	432	1.04e-41	152
MsG0480018724.01.T01	MTR_7g066410	31.713	432	227	11	1	377	89	507	7.47e-41	151
MsG0480018724.01.T01	MTR_7g063660	33.252	412	233	16	1	391	88	478	1.02e-40	150
MsG0480018724.01.T01	MTR_7g063660	35.345	116	59	4	157	258	4	117	4.19e-12	67.8
MsG0480018724.01.T01	MTR_7g066260	32.598	408	200	13	1	377	94	457	2.25e-40	150
MsG0480018724.01.T01	MTR_7g066260	28.821	229	141	5	161	375	14	234	1.01e-14	75.9
MsG0480018724.01.T01	MTR_7g063900	30.709	381	232	10	1	359	89	459	7.59e-39	145
MsG0480018724.01.T01	MTR_7g063900	29.150	247	132	10	147	375	4	225	2.60e-12	68.6
MsG0480018724.01.T01	MTR_1g041315	30.348	402	201	13	1	366	93	451	2.28e-37	141
MsG0480018724.01.T01	MTR_7g063880	30.713	407	237	13	1	390	90	468	2.98e-35	135
MsG0480018724.01.T01	MTR_7g063880	29.412	255	141	10	157	391	6	241	1.21e-13	72.8
MsG0480018724.01.T01	MTR_7g062280	29.466	431	237	14	1	391	89	492	5.26e-35	135
MsG0480018724.01.T01	MTR_7g062300	30.446	404	228	14	1	377	91	468	1.24e-34	134
MsG0480018724.01.T01	MTR_7g012680	30.935	417	205	13	1	391	93	452	9.80e-34	130
MsG0480018724.01.T01	MTR_7g063890	29.973	377	233	9	1	356	106	472	4.56e-33	129
MsG0480018724.01.T01	MTR_7g063890	29.437	231	124	8	165	375	30	241	3.97e-13	71.2
MsG0480018724.01.T01	MTR_7g066360	33.333	399	203	12	1	380	93	447	6.47e-33	129
MsG0480018724.01.T01	MTR_7g066580	30.521	403	204	14	1	370	74	433	1.34e-32	127
MsG0480018724.01.T01	MTR_7g066280	28.883	412	231	12	1	377	1	385	1.48e-32	127
MsG0480018724.01.T01	MTR_3g065200	28.608	388	221	10	1	376	72	415	7.08e-32	125
MsG0480018724.01.T01	MTR_7g063840	28.606	409	251	12	1	391	89	474	1.03e-31	125
MsG0480018724.01.T01	MTR_7g063820	31.840	424	230	20	1	391	88	485	4.72e-31	124
MsG0480018724.01.T01	MTR_7g066310	27.720	386	177	10	1	377	86	378	1.48e-29	118
MsG0480018724.01.T01	MTR_7g058700	31.884	276	128	7	1	238	584	837	2.07e-28	117
MsG0480018724.01.T01	MTR_7g063830	28.643	398	210	11	1	377	89	433	5.80e-28	114
MsG0480018724.01.T01	MTR_7g063830	26.106	226	139	7	165	375	13	225	2.46e-12	68.6
MsG0480018724.01.T01	MTR_7g066290	34.686	271	150	6	1	247	94	361	2.01e-27	113
MsG0480018724.01.T01	MTR_7g063920	27.792	403	224	11	1	391	90	437	3.91e-27	112
MsG0480018724.01.T01	MTR_7g066680	32.222	270	144	9	113	362	37	287	4.50e-27	110
MsG0480018724.01.T01	MTR_7g066480	28.715	397	194	10	1	380	95	419	1.20e-26	110
MsG0480018724.01.T01	MTR_7g066480	27.869	244	126	11	155	375	13	229	6.99e-11	63.9
MsG0480018724.01.T01	MTR_7g063670	27.119	413	241	13	2	391	83	458	3.14e-24	104
MsG0480018724.01.T01	MTR_3g007740	26.076	395	239	14	2	377	77	437	1.63e-21	96.3
MsG0480018724.01.T01	MTR_3g007740	29.148	223	129	9	162	375	9	211	2.14e-11	65.5
MsG0480018724.01.T01	MTR_2g029400	27.559	381	195	10	1	370	93	403	2.97e-20	92.0
MsG0480018724.01.T01	MTR_8g445860	28.862	246	120	7	162	377	13	233	2.37e-19	87.0
MsG0480018724.01.T01	MTR_7g100420	31.429	280	156	10	113	377	134	392	2.74e-18	86.3
MsG0480018724.01.T01	MTR_7g066490	25.381	394	197	11	1	380	95	405	5.26e-18	85.5
MsG0480018724.01.T01	MTR_7g063720	29.167	240	132	5	152	379	10	223	2.40e-17	81.3
MsG0480018724.01.T01	MTR_0150s0010	27.897	233	152	7	157	377	5	233	8.92e-14	70.9
MsG0480018724.01.T01	MTR_1g014060	31.795	195	99	4	192	377	210	379	9.92e-14	72.4
MsG0480018724.01.T01	MTR_4g019240	64.286	56	18	1	340	395	112	165	2.12e-11	62.8
MsG0480018724.01.T01	MTR_1g115450	40.506	79	39	1	162	232	7	85	2.14e-11	61.6
MsG0480018724.01.T01	MTR_1g115455	27.869	244	140	11	154	377	1	228	8.74e-11	62.0

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480018724.01.T01	AT5G01140	31.100	418	229	13	1	390	72	458	1.74e-39	147
MsG0480018724.01.T01	AT5G01130	29.925	401	233	12	1	390	88	451	3.13e-36	137
MsG0480018724.01.T01	AT5G01120	28.744	414	241	15	1	377	88	484	3.53e-34	133
MsG0480018724.01.T01	AT5G43240	28.738	428	227	19	1	377	88	488	7.75e-30	120
MsG0480018724.01.T01	AT5G43240	28.738	428	227	19	1	377	88	488	7.75e-30	120
MsG0480018724.01.T01	AT5G43240	28.738	428	227	19	1	377	88	488	7.75e-30	120
MsG0480018724.01.T01	AT3G09140	29.009	424	231	15	1	377	88	488	3.16e-28	116
MsG0480018724.01.T01	AT3G09140	27.083	240	144	7	162	375	9	243	7.48e-11	64.3
MsG0480018724.01.T01	AT5G37320	29.117	419	234	15	1	384	89	479	1.96e-26	110
MsG0480018724.01.T01	AT5G01150	27.500	400	254	9	1	377	88	474	7.39e-26	109
MsG0480018724.01.T01	AT3G09110	31.474	251	155	8	2	238	89	336	2.46e-24	103
MsG0480018724.01.T01	AT3G09140	27.212	452	231	16	1	377	88	516	2.04e-23	102
MsG0480018724.01.T01	AT5G43240	28.446	341	193	13	65	377	27	344	8.50e-23	99.0
MsG0480018724.01.T01	AT3G09120	30.638	235	139	6	1	216	84	313	3.02e-21	94.0

Find 86 sgRNAs with CRISPR-Local

Find 149 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GACCCTCATAATCCAAATTT+TGG	0.074085	4:-9005300	None:intergenic
AGGTGGGTTGTCTTTATTTA+TGG	0.113150	4:-9006342	None:intergenic
GCCTCTCACAAATACAATTT+TGG	0.193780	4:+9006310	MsG0480018724.01.T01:CDS
AAACGGAGAGGCCCAAAATT+TGG	0.202521	4:+9005288	MsG0480018724.01.T01:CDS
CACGAATAACAGAAATAAAA+TGG	0.256157	4:+9006400	MsG0480018724.01.T01:CDS
ACCAGATGCATCAATGTTTC+TGG	0.258927	4:+9005327	MsG0480018724.01.T01:CDS
AGGTTCCATTGTAAACCTTT+TGG	0.300527	4:+9006523	MsG0480018724.01.T01:CDS
TTTAAGCTGTTGATGGAGTT+GGG	0.330345	4:+9005394	MsG0480018724.01.T01:CDS
CTTTAAGCTGTTGATGGAGT+TGG	0.330640	4:+9005393	MsG0480018724.01.T01:CDS
GTGAAGAGAGAAGGATTATA+TGG	0.333879	4:+9006866	MsG0480018724.01.T01:CDS
CAGTGATTCACATGGATTCT+TGG	0.338174	4:-9005146	None:intergenic
CTGGTCCACTGGCACTAGTC+AGG	0.353124	4:-9007134	None:intergenic
ACACCTTCTTCTGACCTGTT+GGG	0.354032	4:-9006833	None:intergenic
GACTTACTTTAAGCTGTTGA+TGG	0.354471	4:+9005387	MsG0480018724.01.T01:CDS
CACCTTCTTCTGACCTGTTG+GGG	0.390319	4:-9006832	None:intergenic
CACACCTTCTTCTGACCTGT+TGG	0.394282	4:-9006834	None:intergenic
GGCCCAAAATTTGGATTATG+AGG	0.396371	4:+9005297	MsG0480018724.01.T01:CDS
GGAATGTTGAGGGGTTGGTT+TGG	0.398404	4:-9006653	None:intergenic
AGCTTCCTTACCATGCCATT+AGG	0.400764	4:+9006503	MsG0480018724.01.T01:CDS
AATGGATCTCTCTTTCGCTT+TGG	0.418129	4:-9006716	None:intergenic
AGTGATTCACATGGATTCTT+GGG	0.421877	4:-9005145	None:intergenic
ACACATCTAGCAAGAGAGTT+AGG	0.425012	4:-9006548	None:intergenic
CATAAGGAATGTTGAGGGGT+TGG	0.425340	4:-9006658	None:intergenic
GGCACTTTCAAAAGGTCTCC+TGG	0.431676	4:-9007153	None:intergenic
AAAACCTTCATTGCGCTTGT+GGG	0.435042	4:+9005257	MsG0480018724.01.T01:CDS
GAGAGGCTCATTAGAGGTTA+AGG	0.435850	4:-9006294	None:intergenic
ATTTGTGAGAGGCTCATTAG+AGG	0.437734	4:-9006300	None:intergenic
ACCAGAAACATTGATGCATC+TGG	0.438385	4:-9005328	None:intergenic
CAAAACCTTCATTGCGCTTG+TGG	0.445825	4:+9005256	MsG0480018724.01.T01:CDS
CAAAAGGTCTCCTGGTCCAC+TGG	0.449938	4:-9007145	None:intergenic
GTACAAGAGTGTGGAGAACT+TGG	0.454304	4:+9006580	MsG0480018724.01.T01:CDS
CTTGTTTAGGCACTTTCAAA+AGG	0.456406	4:-9007161	None:intergenic
CAAGAGAGTTAGGTCCCAAA+AGG	0.465979	4:-9006538	None:intergenic
AGATTCTGATCGACGTGTCT+TGG	0.469015	4:-9006783	None:intergenic
ACTGTTGGTGCAGATTGCTT+AGG	0.472248	4:-9006362	None:intergenic
AGGTTAAGGAATACTTGAGC+AGG	0.484909	4:-9006280	None:intergenic
CCTTCTTCTGACCTGTTGGG+GGG	0.488088	4:-9006830	None:intergenic
GTTTCCCACAAGCGCAATGA+AGG	0.491621	4:-9005261	None:intergenic
AGGTTTACAATGGAACCTAA+TGG	0.501112	4:-9006518	None:intergenic
GGATTTAGTAACACAGACTT+GGG	0.501573	4:-9006605	None:intergenic
CTGACTAGTGCCAGTGGACC+AGG	0.505141	4:+9007135	MsG0480018724.01.T01:CDS
AACTCTCTTGCTAGATGTGT+TGG	0.507764	4:+9006551	MsG0480018724.01.T01:CDS
GTTGGTGCAGATTGCTTAGG+TGG	0.508685	4:-9006359	None:intergenic
AGAGAAGGATTATATGGTGT+AGG	0.509059	4:+9006872	MsG0480018724.01.T01:CDS
AAGTCTGTGTTACTAAATCC+TGG	0.510892	4:+9006608	MsG0480018724.01.T01:CDS
CACACACAACATTGGCAAGC+AGG	0.511161	4:+9005447	MsG0480018724.01.T01:CDS
CAAAACTGTGGTGCTATACC+AGG	0.511808	4:-9006626	None:intergenic
ACCTTCTTCTGACCTGTTGG+GGG	0.519536	4:-9006831	None:intergenic
AGACGCAAATAAACTGAAAG+TGG	0.521334	4:-9006914	None:intergenic
TCTTGACGATCTTGAAGTGA+AGG	0.522916	4:+9006964	MsG0480018724.01.T01:CDS
CTTCTTCTGACCTGTTGGGG+GGG	0.534388	4:-9006829	None:intergenic
TTATTTCTGTTATTCGTGCA+AGG	0.535890	4:-9006395	None:intergenic
AGGATTTAGTAACACAGACT+TGG	0.536535	4:-9006606	None:intergenic
CTTCAAGATCGTCAAGAGGA+AGG	0.538256	4:-9006958	None:intergenic
GCCAAAATTGTATTTGTGAG+AGG	0.542965	4:-9006311	None:intergenic
TTAAGCTGTTGATGGAGTTG+GGG	0.553198	4:+9005395	MsG0480018724.01.T01:CDS
GAAGTGAAGGAAATAAGCAT+TGG	0.567701	4:+9006977	MsG0480018724.01.T01:CDS
GAAGTCAACAAAATCTCCGT+TGG	0.575489	4:-9006474	None:intergenic
TGGAACCTAATGGCATGGTA+AGG	0.579585	4:-9006508	None:intergenic
TTGGTGCAGATTGCTTAGGT+GGG	0.579593	4:-9006358	None:intergenic
TACAATGGAACCTAATGGCA+TGG	0.581094	4:-9006513	None:intergenic
AGGTCCCAAAAGGTTTACAA+TGG	0.585270	4:-9006528	None:intergenic
AGGTCAGAAGAAGGTGTGGT+GGG	0.585287	4:+9006839	MsG0480018724.01.T01:CDS
TGGTCCACTGGCACTAGTCA+GGG	0.594688	4:-9007133	None:intergenic
GCCCAAAATTTGGATTATGA+GGG	0.595994	4:+9005298	MsG0480018724.01.T01:CDS
TTCACTTCAAGATCGTCAAG+AGG	0.596428	4:-9006962	None:intergenic
CAGGTCAGAAGAAGGTGTGG+TGG	0.596620	4:+9006838	MsG0480018724.01.T01:CDS
GCTTGTGGGAAACCAACAAA+CGG	0.604091	4:+9005271	MsG0480018724.01.T01:CDS
AATAAGCATTGGTGAAGCTG+AGG	0.609065	4:+9006988	MsG0480018724.01.T01:CDS
GTGGGATTTGTGAAGAGAGA+AGG	0.609295	4:+9006857	MsG0480018724.01.T01:CDS
CAAGGCAATACTCTAACTGT+TGG	0.616222	4:-9006377	None:intergenic
GAGGAAGTCACACACAACAT+TGG	0.621785	4:+9005439	MsG0480018724.01.T01:CDS
ATGATATTCACAGAAGCCAA+CGG	0.635551	4:+9006458	MsG0480018724.01.T01:CDS
TTCAGACTTGACTCAACTAG+AGG	0.639443	4:+9005420	MsG0480018724.01.T01:CDS
TTTACATAAGGAATGTTGAG+GGG	0.645423	4:-9006662	None:intergenic
CAACAGGTCAGAAGAAGGTG+TGG	0.646980	4:+9006835	MsG0480018724.01.T01:CDS
TTGATGTCAAGAATGCTCGA+AGG	0.662606	4:-9007104	None:intergenic
TGGTAACTTGTACAAGAGTG+TGG	0.668210	4:+9006571	MsG0480018724.01.T01:CDS
ACACAACATTGGCAAGCAGG+AGG	0.678135	4:+9005450	MsG0480018724.01.T01:CDS
TTTACCCTGACTAGTGCCAG+TGG	0.682350	4:+9007129	MsG0480018724.01.T01:CDS
CAGCTTAAAGTAAGTCACAG+AGG	0.704820	4:-9005380	None:intergenic
TTTATGCACAGTGATTCACA+TGG	0.706252	4:-9005154	None:intergenic
TGGGAAACCAACAAACGGAG+AGG	0.713749	4:+9005276	MsG0480018724.01.T01:CDS
TGGTTTGGACAACAAAACTG+TGG	0.726414	4:-9006638	None:intergenic
GATTTAGTAACACAGACTTG+GGG	0.736630	4:-9006604	None:intergenic
TATAATAGAAGAATTCACTG+AGG	0.766608	4:+9006748	MsG0480018724.01.T01:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AATTTAATATTCACAATCTT+AGG	+	Chr4:9005852-9005871	MsG0480018724.01.T01:intron	15.0%
!!	TATTATTCTGTTACAAAAAA+AGG	-	Chr4:9006008-9006027	None:intergenic	15.0%
!!	TCTATTATATGAAAAATGAA+TGG	-	Chr4:9006737-9006756	None:intergenic	15.0%
!!!	ATTTAAGATCTATTGAATTT+TGG	-	Chr4:9005803-9005822	None:intergenic	15.0%
!!!	TTTAAGATCTATTGAATTTT+GGG	-	Chr4:9005802-9005821	None:intergenic	15.0%
!!!	TTTTAGCATAATAATAAGTA+GGG	-	Chr4:9006691-9006710	None:intergenic	15.0%
!!	CAAACAAAAAACTTATTTGA+TGG	-	Chr4:9005208-9005227	None:intergenic	20.0%
!!	CCTCAAAATTTATTATATTG+TGG	+	Chr4:9005692-9005711	MsG0480018724.01.T01:intron	20.0%
!!	TCAATATCTATACATCAAAA+AGG	-	Chr4:9006259-9006278	None:intergenic	20.0%
!!	TTGATTGAAAGAAATATAGA+TGG	-	Chr4:9006172-9006191	None:intergenic	20.0%
!!!	CCACAATATAATAAATTTTG+AGG	-	Chr4:9005695-9005714	None:intergenic	20.0%
!!!	CTTTTAGCATAATAATAAGT+AGG	-	Chr4:9006692-9006711	None:intergenic	20.0%
!!!	GTAAAATTTTGTTCTTGTTT+AGG	-	Chr4:9007177-9007196	None:intergenic	20.0%
!!!	TCTATATTTTACCACAATAA+AGG	-	Chr4:9005631-9005650	None:intergenic	20.0%
!!!	TTAAGATCTATTGAATTTTG+GGG	-	Chr4:9005801-9005820	None:intergenic	20.0%
!	ATAAAGAACAATGTAATGAG+AGG	-	Chr4:9005531-9005550	None:intergenic	25.0%
!	ATTTCTTCTAACATGTCTTA+AGG	-	Chr4:9006036-9006055	None:intergenic	25.0%
!	CACGAATAACAGAAATAAAA+TGG	+	Chr4:9006400-9006419	MsG0480018724.01.T01:CDS	25.0%
!	TAAAGAACAATGTAATGAGA+GGG	-	Chr4:9005530-9005549	None:intergenic	25.0%
!	TATAATAGAAGAATTCACTG+AGG	+	Chr4:9006748-9006767	MsG0480018724.01.T01:CDS	25.0%
!	TTAGAGAAGTTATTAGTTAG+AGG	+	Chr4:9005972-9005991	MsG0480018724.01.T01:intron	25.0%
!	TTGAAAGAACTTGAAATCTT+TGG	+	Chr4:9006094-9006113	MsG0480018724.01.T01:intron	25.0%
!	TTTCTTCTAACATGTCTTAA+GGG	-	Chr4:9006035-9006054	None:intergenic	25.0%
!!	AATTTCGAATTTGAAACACA+AGG	+	Chr4:9005820-9005839	MsG0480018724.01.T01:intron	25.0%
!!	AGGAAATTATCAATTGCTTT+TGG	-	Chr4:9006239-9006258	None:intergenic	25.0%
!!	TATTTTACCACAATAAAGGT+AGG	-	Chr4:9005627-9005646	None:intergenic	25.0%
!!	TGTTCTTTATTTACTTGCAT+AGG	+	Chr4:9005541-9005560	MsG0480018724.01.T01:intron	25.0%
!!	TTTTACATAAGGAATGTTGA+GGG	-	Chr4:9006666-9006685	None:intergenic	25.0%
!!!	TCAATCAATTTTTCAATCCT+TGG	+	Chr4:9006184-9006203	MsG0480018724.01.T01:intron	25.0%
!!!	TTAGTATGTCTTCTTGTTTT+AGG	-	Chr4:9005936-9005955	None:intergenic	25.0%
	AAAGAACTTGAAATCTTTGG+AGG	+	Chr4:9006097-9006116	MsG0480018724.01.T01:intron	30.0%
	AACCAAAAATTAAAACCACG+AGG	-	Chr4:9005598-9005617	None:intergenic	30.0%
	AGTAGTACTATGTTTCCTAA+AGG	-	Chr4:9005740-9005759	None:intergenic	30.0%
	ATTTATTATATTGTGGCTGC+AGG	+	Chr4:9005699-9005718	MsG0480018724.01.T01:intron	30.0%
	GTAGTACTATGTTTCCTAAA+GGG	-	Chr4:9005739-9005758	None:intergenic	30.0%
	TTTACATAAGGAATGTTGAG+GGG	-	Chr4:9006665-9006684	None:intergenic	30.0%
!	ACCCTCATAATCCAAATTTT+GGG	-	Chr4:9005302-9005321	None:intergenic	30.0%
!	GTTTTACATAAGGAATGTTG+AGG	-	Chr4:9006667-9006686	None:intergenic	30.0%
!!	TAAGTAGGGTGTTTTACATA+AGG	-	Chr4:9006677-9006696	None:intergenic	30.0%
!!	TTATTTCTGTTATTCGTGCA+AGG	-	Chr4:9006398-9006417	None:intergenic	30.0%
	AACAATGTAATGAGAGGGTA+TGG	-	Chr4:9005525-9005544	None:intergenic	35.0%
	ACAACATTAAGAGTTAGCCA+AGG	-	Chr4:9006204-9006223	None:intergenic	35.0%
	AGACGCAAATAAACTGAAAG+TGG	-	Chr4:9006917-9006936	None:intergenic	35.0%
	AGAGAAGGATTATATGGTGT+AGG	+	Chr4:9006872-9006891	MsG0480018724.01.T01:CDS	35.0%
	AGGATTTAGTAACACAGACT+TGG	-	Chr4:9006609-9006628	None:intergenic	35.0%
	AGGTTTACAATGGAACCTAA+TGG	-	Chr4:9006521-9006540	None:intergenic	35.0%
	AGTGATTCACATGGATTCTT+GGG	-	Chr4:9005148-9005167	None:intergenic	35.0%
	ATGATATTCACAGAAGCCAA+CGG	+	Chr4:9006458-9006477	MsG0480018724.01.T01:CDS	35.0%
	CAAAAATTAAAACCACGAGG+TGG	-	Chr4:9005595-9005614	None:intergenic	35.0%
	CTTGTTTAGGCACTTTCAAA+AGG	-	Chr4:9007164-9007183	None:intergenic	35.0%
	GAAGTGAAGGAAATAAGCAT+TGG	+	Chr4:9006977-9006996	MsG0480018724.01.T01:CDS	35.0%
	GACTTACTTTAAGCTGTTGA+TGG	+	Chr4:9005387-9005406	MsG0480018724.01.T01:CDS	35.0%
	GAGAAGTTATTAGTTAGAGG+AGG	+	Chr4:9005975-9005994	MsG0480018724.01.T01:intron	35.0%
	GATTTAGTAACACAGACTTG+GGG	-	Chr4:9006607-9006626	None:intergenic	35.0%
	GCCAAAATTGTATTTGTGAG+AGG	-	Chr4:9006314-9006333	None:intergenic	35.0%
	GCCCAAAATTTGGATTATGA+GGG	+	Chr4:9005298-9005317	MsG0480018724.01.T01:CDS	35.0%
	GGAAACATAGTACTACTACT+AGG	+	Chr4:9005743-9005762	MsG0480018724.01.T01:intron	35.0%
	GGATTTAGTAACACAGACTT+GGG	-	Chr4:9006608-9006627	None:intergenic	35.0%
	GTGAAGAGAGAAGGATTATA+TGG	+	Chr4:9006866-9006885	MsG0480018724.01.T01:CDS	35.0%
	TGGAGGCTAATGATTAAGAT+TGG	-	Chr4:9005575-9005594	None:intergenic	35.0%
	TTTATGCACAGTGATTCACA+TGG	-	Chr4:9005157-9005176	None:intergenic	35.0%
!	AAGTCTGTGTTACTAAATCC+TGG	+	Chr4:9006608-9006627	MsG0480018724.01.T01:CDS	35.0%
!	ACAATGTAATGAGAGGGTAT+GGG	-	Chr4:9005524-9005543	None:intergenic	35.0%
!	AGGTTCCATTGTAAACCTTT+TGG	+	Chr4:9006523-9006542	MsG0480018724.01.T01:CDS	35.0%
!	GACCCTCATAATCCAAATTT+TGG	-	Chr4:9005303-9005322	None:intergenic	35.0%
!	GCCTCTCACAAATACAATTT+TGG	+	Chr4:9006310-9006329	MsG0480018724.01.T01:CDS	35.0%
!	GGTTCCATTGTAAACCTTTT+GGG	+	Chr4:9006524-9006543	MsG0480018724.01.T01:CDS	35.0%
!	TTTAAGCTGTTGATGGAGTT+GGG	+	Chr4:9005394-9005413	MsG0480018724.01.T01:CDS	35.0%
!	TTTTCTGCCTACCTTTATTG+TGG	+	Chr4:9005617-9005636	MsG0480018724.01.T01:intron	35.0%
!!	AGGTGGGTTGTCTTTATTTA+TGG	-	Chr4:9006345-9006364	None:intergenic	35.0%
!!!	CACCTCGTGGTTTTAATTTT+TGG	+	Chr4:9005593-9005612	MsG0480018724.01.T01:intron	35.0%
	AAAACCTTCATTGCGCTTGT+GGG	+	Chr4:9005257-9005276	MsG0480018724.01.T01:CDS	40.0%
	AAATTAAAACCACGAGGTGG+AGG	-	Chr4:9005592-9005611	None:intergenic	40.0%
	AACTCTCTTGCTAGATGTGT+TGG	+	Chr4:9006551-9006570	MsG0480018724.01.T01:CDS	40.0%
	AATGGATCTCTCTTTCGCTT+TGG	-	Chr4:9006719-9006738	None:intergenic	40.0%
	ACACATCTAGCAAGAGAGTT+AGG	-	Chr4:9006551-9006570	None:intergenic	40.0%
	ACCAGAAACATTGATGCATC+TGG	-	Chr4:9005331-9005350	None:intergenic	40.0%
	ACCAGATGCATCAATGTTTC+TGG	+	Chr4:9005327-9005346	MsG0480018724.01.T01:CDS	40.0%
	AGGTCCCAAAAGGTTTACAA+TGG	-	Chr4:9006531-9006550	None:intergenic	40.0%
	AGGTTAAGGAATACTTGAGC+AGG	-	Chr4:9006283-9006302	None:intergenic	40.0%
	ATTTGACGTTGCGTATCAGT+TGG	+	Chr4:9005766-9005785	MsG0480018724.01.T01:intron	40.0%
	ATTTGTGAGAGGCTCATTAG+AGG	-	Chr4:9006303-9006322	None:intergenic	40.0%
	CAAGGCAATACTCTAACTGT+TGG	-	Chr4:9006380-9006399	None:intergenic	40.0%
	CAGCTTAAAGTAAGTCACAG+AGG	-	Chr4:9005383-9005402	None:intergenic	40.0%
	CAGGAGGTAATGATATTGTG+TGG	+	Chr4:9005466-9005485	MsG0480018724.01.T01:intron	40.0%
	CAGTGATTCACATGGATTCT+TGG	-	Chr4:9005149-9005168	None:intergenic	40.0%
	CTACATCATAACCGAAGTTG+TGG	-	Chr4:9005663-9005682	None:intergenic	40.0%
	CTTCGGTTATGATGTAGTTG+TGG	+	Chr4:9005666-9005685	MsG0480018724.01.T01:intron	40.0%
	GAAGTCAACAAAATCTCCGT+TGG	-	Chr4:9006477-9006496	None:intergenic	40.0%
	GGCCCAAAATTTGGATTATG+AGG	+	Chr4:9005297-9005316	MsG0480018724.01.T01:CDS	40.0%
	TACAATGGAACCTAATGGCA+TGG	-	Chr4:9006516-9006535	None:intergenic	40.0%
	TCTTGACGATCTTGAAGTGA+AGG	+	Chr4:9006964-9006983	MsG0480018724.01.T01:CDS	40.0%
	TTCACTTCAAGATCGTCAAG+AGG	-	Chr4:9006965-9006984	None:intergenic	40.0%
	TTCAGACTTGACTCAACTAG+AGG	+	Chr4:9005420-9005439	MsG0480018724.01.T01:CDS	40.0%
	TTGATGTCAAGAATGCTCGA+AGG	-	Chr4:9007107-9007126	None:intergenic	40.0%
!	CTTTAAGCTGTTGATGGAGT+TGG	+	Chr4:9005393-9005412	MsG0480018724.01.T01:CDS	40.0%
!	TGGTAACTTGTACAAGAGTG+TGG	+	Chr4:9006571-9006590	MsG0480018724.01.T01:CDS	40.0%
!	TGGTTTGGACAACAAAACTG+TGG	-	Chr4:9006641-9006660	None:intergenic	40.0%
!	TTAAGCTGTTGATGGAGTTG+GGG	+	Chr4:9005395-9005414	MsG0480018724.01.T01:CDS	40.0%
!!	AATAAGCATTGGTGAAGCTG+AGG	+	Chr4:9006988-9007007	MsG0480018724.01.T01:CDS	40.0%
	AAACGGAGAGGCCCAAAATT+TGG	+	Chr4:9005288-9005307	MsG0480018724.01.T01:CDS	45.0%
	ACACCTTCTTCTGACCTGTT+GGG	-	Chr4:9006836-9006855	None:intergenic	45.0%
	ACTGTTGGTGCAGATTGCTT+AGG	-	Chr4:9006365-9006384	None:intergenic	45.0%
	AGATTCTGATCGACGTGTCT+TGG	-	Chr4:9006786-9006805	None:intergenic	45.0%
	AGCTTCCTTACCATGCCATT+AGG	+	Chr4:9006503-9006522	MsG0480018724.01.T01:CDS	45.0%
	CAAAACCTTCATTGCGCTTG+TGG	+	Chr4:9005256-9005275	MsG0480018724.01.T01:CDS	45.0%
	CAAGAGAGTTAGGTCCCAAA+AGG	-	Chr4:9006541-9006560	None:intergenic	45.0%
	CATAAGGAATGTTGAGGGGT+TGG	-	Chr4:9006661-9006680	None:intergenic	45.0%
	CATCATAACCGAAGTTGTGG+CGG	-	Chr4:9005660-9005679	None:intergenic	45.0%
	CTTCAAGATCGTCAAGAGGA+AGG	-	Chr4:9006961-9006980	None:intergenic	45.0%
	GAGAGGCTCATTAGAGGTTA+AGG	-	Chr4:9006297-9006316	None:intergenic	45.0%
	GAGGAAGTCACACACAACAT+TGG	+	Chr4:9005439-9005458	MsG0480018724.01.T01:CDS	45.0%
	GATAAATGCCGCCACAACTT+CGG	+	Chr4:9005649-9005668	MsG0480018724.01.T01:intron	45.0%
	GCTTGTGGGAAACCAACAAA+CGG	+	Chr4:9005271-9005290	MsG0480018724.01.T01:CDS	45.0%
	GTGGGATTTGTGAAGAGAGA+AGG	+	Chr4:9006857-9006876	MsG0480018724.01.T01:CDS	45.0%
	TGGAACCTAATGGCATGGTA+AGG	-	Chr4:9006511-9006530	None:intergenic	45.0%
	TTATATTGTGGCTGCAGGTG+TGG	+	Chr4:9005704-9005723	MsG0480018724.01.T01:intron	45.0%
	TTCCTCTTGACTTCTGATGC+AGG	+	Chr4:9007071-9007090	MsG0480018724.01.T01:intron	45.0%
	TTGGTGCAGATTGCTTAGGT+GGG	-	Chr4:9006361-9006380	None:intergenic	45.0%
!	GTACAAGAGTGTGGAGAACT+TGG	+	Chr4:9006580-9006599	MsG0480018724.01.T01:CDS	45.0%
!	GTTGCGTATCAGTTGGTGTT+AGG	+	Chr4:9005773-9005792	MsG0480018724.01.T01:intron	45.0%
!	TGTGGCACGTTTTACCCTTT+AGG	+	Chr4:9005722-9005741	MsG0480018724.01.T01:intron	45.0%
!!	CAAAACTGTGGTGCTATACC+AGG	-	Chr4:9006629-9006648	None:intergenic	45.0%
	ACACAACATTGGCAAGCAGG+AGG	+	Chr4:9005450-9005469	MsG0480018724.01.T01:CDS	50.0%
	ACCTTCTTCTGACCTGTTGG+GGG	-	Chr4:9006834-9006853	None:intergenic	50.0%
	AGCCTGCATCAGAAGTCAAG+AGG	-	Chr4:9007076-9007095	None:intergenic	50.0%
	CAACAGGTCAGAAGAAGGTG+TGG	+	Chr4:9006835-9006854	MsG0480018724.01.T01:CDS	50.0%
	CACACACAACATTGGCAAGC+AGG	+	Chr4:9005447-9005466	MsG0480018724.01.T01:CDS	50.0%
	CACACCTTCTTCTGACCTGT+TGG	-	Chr4:9006837-9006856	None:intergenic	50.0%
	CACCTTCTTCTGACCTGTTG+GGG	-	Chr4:9006835-9006854	None:intergenic	50.0%
	GGCACTTTCAAAAGGTCTCC+TGG	-	Chr4:9007156-9007175	None:intergenic	50.0%
	GTTGGTGCAGATTGCTTAGG+TGG	-	Chr4:9006362-9006381	None:intergenic	50.0%
	GTTTCCCACAAGCGCAATGA+AGG	-	Chr4:9005264-9005283	None:intergenic	50.0%
	TGGGAAACCAACAAACGGAG+AGG	+	Chr4:9005276-9005295	MsG0480018724.01.T01:CDS	50.0%
	TTTACCCTGACTAGTGCCAG+TGG	+	Chr4:9007129-9007148	MsG0480018724.01.T01:CDS	50.0%
!	AATCATTAGCCTCCACCTCG+TGG	+	Chr4:9005580-9005599	MsG0480018724.01.T01:intron	50.0%
!	AGGTCAGAAGAAGGTGTGGT+GGG	+	Chr4:9006839-9006858	MsG0480018724.01.T01:CDS	50.0%
!	GCATTGGTGAAGCTGAGGTA+AGG	+	Chr4:9006993-9007012	MsG0480018724.01.T01:intron	50.0%
!	TTTTGGGCCTCTCCGTTTGT+TGG	-	Chr4:9005286-9005305	None:intergenic	50.0%
!!	GGAATGTTGAGGGGTTGGTT+TGG	-	Chr4:9006656-9006675	None:intergenic	50.0%
	CAAAAGGTCTCCTGGTCCAC+TGG	-	Chr4:9007148-9007167	None:intergenic	55.0%
	CCTTCTTCTGACCTGTTGGG+GGG	-	Chr4:9006833-9006852	None:intergenic	55.0%
	CTTCTTCTGACCTGTTGGGG+GGG	-	Chr4:9006832-9006851	None:intergenic	55.0%
	TGGTCCACTGGCACTAGTCA+GGG	-	Chr4:9007136-9007155	None:intergenic	55.0%
!	CAGGTCAGAAGAAGGTGTGG+TGG	+	Chr4:9006838-9006857	MsG0480018724.01.T01:CDS	55.0%
	CCCCCCAACAGGTCAGAAGA+AGG	+	Chr4:9006830-9006849	MsG0480018724.01.T01:CDS	60.0%
	CTGACTAGTGCCAGTGGACC+AGG	+	Chr4:9007135-9007154	MsG0480018724.01.T01:CDS	60.0%
	CTGGTCCACTGGCACTAGTC+AGG	-	Chr4:9007137-9007156	None:intergenic	60.0%
	CTGCACTCGACCCCCCCAAC+AGG	+	Chr4:9006819-9006838	MsG0480018724.01.T01:CDS	70.0%

Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	9005133	9007203	9005133	ID=MsG0480018724.01;Name=MsG0480018724.01
Chr4	mRNA	9005133	9007203	9005133	ID=MsG0480018724.01.T01;Parent=MsG0480018724.01;Name=MsG0480018724.01.T01;_AED=0.18;_eAED=0.18;_QI=0\|0\|0\|1\|1\|1\|3\|0\|395
Chr4	exon	9005133	9005471	9005133	ID=MsG0480018724.01.T01:exon:2898;Parent=MsG0480018724.01.T01
Chr4	exon	9006272	9007009	9006272	ID=MsG0480018724.01.T01:exon:2899;Parent=MsG0480018724.01.T01
Chr4	exon	9007093	9007203	9007093	ID=MsG0480018724.01.T01:exon:2900;Parent=MsG0480018724.01.T01
Chr4	CDS	9005133	9005471	9005133	ID=MsG0480018724.01.T01:cds;Parent=MsG0480018724.01.T01
Chr4	CDS	9006272	9007009	9006272	ID=MsG0480018724.01.T01:cds;Parent=MsG0480018724.01.T01
Chr4	CDS	9007093	9007203	9007093	ID=MsG0480018724.01.T01:cds;Parent=MsG0480018724.01.T01

Gene Sequence

>MsG0480018724.01.T01

ATGTTGCTGCATCCCAAGAATCCATGTGAATCACTGTGCATAAAGCTATTCTTGAATATTGACGACACTGAACCATCAAATAAGTTTTTTGTTTGTGATTCTTGTAACAAGTTCACTACTTTTCAAAACCTTCATTGCGCTTGTGGGAAACCAACAAACGGAGAGGCCCAAAATTTGGATTATGAGGGTCACAAACCAGATGCATCAATGTTTCTGGTATCTGATGACTTGAAGATTGTGCGATTTTCCTCTGTGACTTACTTTAAGCTGTTGATGGAGTTGGGGTATTCAGACTTGACTCAACTAGAGGAAGTCACACACAACATTGGCAAGCAGGAGATATTGAACCTGCTCAAGTATTCCTTAACCTCTAATGAGCCTCTCACAAATACAATTTTGGCATGTAGCTCCATAAATAAAGACAACCCACCTAAGCAATCTGCACCAACAGTTAGAGTATTGCCTTGCACGAATAACAGAAATAAAATGGATGTTAAGATTGTGCAGAGTAAATCTCTGAAAAAAATGATATTCACAGAAGCCAACGGAGATTTTGTTGACTTCATTTTTAGCTTCCTTACCATGCCATTAGGTTCCATTGTAAACCTTTTGGGACCTAACTCTCTTGCTAGATGTGTTGGTAACTTGTACAAGAGTGTGGAGAACTTGGACCCCAAGTCTGTGTTACTAAATCCTGGTATAGCACCACAGTTTTGTTGTCCAAACCAACCCCTCAACATTCCTTATGTAAAACACCCTACTTATTATTATGCTAAAAGAATACCAAAGCGAAAGAGAGATCCATTCATTTTTCATATAATAGAAGAATTCACTGAGGAAAGAGTGATTTCCAAGACACGTCGATCAGAATCTTATTCATTCTTGACTGCACTCGACCCCCCCAACAGGTCAGAAGAAGGTGTGGTGGGATTTGTGAAGAGAGAAGGATTATATGGTGTAGGAGATGATCTGAGAGTAAAACCACTTTCAGTTTATTTGCGTCTTTCATATTTGAAAGAGTTAAGCCTTCCTCTTGACGATCTTGAAGTGAAGGAAATAAGCATTGGTGAAGCTGAGGCTTTGAACTTCCTTCGAGCATTCTTGACATCAAAATTTACCCTGACTAGTGCCAGTGGACCAGGAGACCTTTTGAAAGTGCCTAAACAAGAACAAAATTTTACTAACTAG

Protein sequence

>MsG0480018724.01.T01

MLLHPKNPCESLCIKLFLNIDDTEPSNKFFVCDSCNKFTTFQNLHCACGKPTNGEAQNLDYEGHKPDASMFLVSDDLKIVRFSSVTYFKLLMELGYSDLTQLEEVTHNIGKQEILNLLKYSLTSNEPLTNTILACSSINKDNPPKQSAPTVRVLPCTNNRNKMDVKIVQSKSLKKMIFTEANGDFVDFIFSFLTMPLGSIVNLLGPNSLARCVGNLYKSVENLDPKSVLLNPGIAPQFCCPNQPLNIPYVKHPTYYYAKRIPKRKRDPFIFHIIEEFTEERVISKTRRSESYSFLTALDPPNRSEEGVVGFVKREGLYGVGDDLRVKPLSVYLRLSYLKELSLPLDDLEVKEISIGEAEALNFLRAFLTSKFTLTSASGPGDLLKVPKQEQNFTN*