AlfalfaGEDB | MsG0480018545.01

M. sativa cultivar ZhongmuNo.1 / MsG0480018545.01

KEGG: -
GO: -
PFAM: PF05056

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480018545.01.T01	MCH81299.1	76.265	257	52	4	1	252	142	394	8.17E-130	383

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480018545.01.T01	A0A392M241	76.265	257	52	4	1	252	142	394	3.90e-130	383

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0480018545.01	MsG0480018548.01	0.915105	8.735621e-85	2.245770e-80
MsG0480018545.01	MsG0480018763.01	0.852946	3.305711e-61	7.024896e-58

PPI

Gene1	Gene2	Type
MsG0780039039.01	MsG0480018545.01	PPI
MsG0480018551.01	MsG0480018545.01	PPI
MsG0480018548.01	MsG0480018545.01	PPI
MsG0480018784.01	MsG0480018545.01	PPI
MsG0480018720.01	MsG0480018545.01	PPI
MsG0480018747.01	MsG0480018545.01	PPI
MsG0480018545.01	MsG0480018744.01	PPI
MsG0480018728.01	MsG0480018545.01	PPI
MsG0480018763.01	MsG0480018545.01	PPI
MsG0780036389.01	MsG0480018545.01	PPI
MsG0780039010.01	MsG0480018545.01	PPI
MsG0480018736.01	MsG0480018545.01	PPI
MsG0480018860.01	MsG0480018545.01	PPI
MsG0480018748.01	MsG0480018545.01	PPI
MsG0780039008.01	MsG0480018545.01	PPI
MsG0480018719.01	MsG0480018545.01	PPI
MsG0480018558.01	MsG0480018545.01	PPI
MsG0480018545.01	MsG0780039034.01	PPI
MsG0480018545.01	MsG0480018739.01	PPI
MsG0480018861.01	MsG0480018545.01	PPI
MsG0780038997.01	MsG0480018545.01	PPI
MsG0780039009.01	MsG0480018545.01	PPI
MsG0780038878.01	MsG0480018545.01	PPI
MsG0480018857.01	MsG0480018545.01	PPI
MsG0780038994.01	MsG0480018545.01	PPI
MsG0780039063.01	MsG0480018545.01	PPI
MsG0480018751.01	MsG0480018545.01	PPI
MsG0480018760.01	MsG0480018545.01	PPI
MsG0780039026.01	MsG0480018545.01	PPI
MsG0480018545.01	MsG0780039016.01	PPI
MsG0480018724.01	MsG0480018545.01	PPI
MsG0780039018.01	MsG0480018545.01	PPI
MsG0480018735.01	MsG0480018545.01	PPI
MsG0480018867.01	MsG0480018545.01	PPI
MsG0480018550.01	MsG0480018545.01	PPI
MsG0480018545.01	MsG0480018857.01	PPI
MsG0480018545.01	MsG0480018721.01	PPI
MsG0480018553.01	MsG0480018545.01	PPI
MsG0480018554.01	MsG0480018545.01	PPI
MsG0780039038.01	MsG0480018545.01	PPI
MsG0480018545.01	MsG0480018747.01	PPI
MsG0480018721.01	MsG0480018545.01	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480018545.01.T01	MTR_4g017410	71.429	273	51	4	1	264	111	365	1.39e-127	372
MsG0480018545.01.T01	MTR_4g017550	70.301	266	68	4	2	260	91	352	1.28e-124	363
MsG0480018545.01.T01	MTR_4g019340	69.091	275	67	6	2	260	142	414	7.37e-122	357
MsG0480018545.01.T01	MTR_4g017440	69.318	264	72	4	1	256	118	380	1.63e-119	351
MsG0480018545.01.T01	MTR_4g017830	64.815	270	81	6	1	258	110	377	1.51e-113	337
MsG0480018545.01.T01	MTR_4g017610	62.069	261	81	5	1	252	113	364	4.46e-105	313
MsG0480018545.01.T01	MTR_4g017470	72.512	211	50	2	61	263	138	348	3.10e-100	301
MsG0480018545.01.T01	MTR_4g019310	39.051	274	143	7	2	258	109	375	1.38e-47	165
MsG0480018545.01.T01	MTR_4g019310	36.364	99	49	2	157	242	8	105	1.04e-12	67.8
MsG0480018545.01.T01	MTR_7g066350	34.470	264	144	7	1	243	101	356	4.25e-35	131
MsG0480018545.01.T01	MTR_7g066350	37.615	109	55	2	157	252	9	117	3.66e-11	63.2
MsG0480018545.01.T01	MTR_7g058710	33.333	270	154	7	2	251	93	356	1.25e-33	127
MsG0480018545.01.T01	MTR_7g058710	34.513	113	58	3	151	255	6	110	5.88e-11	62.8
MsG0480018545.01.T01	MTR_7g066340	32.197	264	143	9	5	244	108	359	2.52e-30	118
MsG0480018545.01.T01	MTR_7g066340	38.532	109	54	2	157	252	12	120	3.00e-14	72.4
MsG0480018545.01.T01	MTR_7g063900	31.835	267	150	8	3	251	104	356	4.59e-28	112
MsG0480018545.01.T01	MTR_7g063900	36.111	108	55	3	157	251	10	116	1.81e-11	64.3
MsG0480018545.01.T01	MTR_7g066260	31.579	266	147	8	2	242	108	363	5.87e-28	112
MsG0480018545.01.T01	MTR_7g066260	36.697	109	54	3	157	252	15	121	5.73e-11	62.8
MsG0480018545.01.T01	MTR_7g063660	34.783	230	131	7	3	226	103	319	2.55e-27	110
MsG0480018545.01.T01	MTR_7g063660	37.288	118	58	4	149	252	1	116	4.98e-14	71.6
MsG0480018545.01.T01	MTR_7g066430	29.924	264	163	7	16	260	109	369	7.07e-27	108
MsG0480018545.01.T01	MTR_7g066400	33.624	229	128	8	2	220	89	303	3.01e-26	106
MsG0480018545.01.T01	MTR_7g066570	30.935	278	146	10	2	254	107	363	1.02e-25	106
MsG0480018545.01.T01	MTR_7g066570	33.333	120	67	2	158	264	15	134	5.03e-13	68.9
MsG0480018545.01.T01	MTR_1g041315	30.986	284	152	12	2	251	107	380	3.75e-25	103
MsG0480018545.01.T01	MTR_7g058700	30.827	266	126	8	2	234	598	838	4.71e-25	104
MsG0480018545.01.T01	MTR_7g066410	31.507	292	143	12	5	250	106	386	1.89e-24	102
MsG0480018545.01.T01	MTR_7g012680	29.964	277	136	9	2	254	107	349	5.35e-24	100
MsG0480018545.01.T01	MTR_7g012680	33.333	117	65	2	157	260	14	130	1.78e-11	64.3
MsG0480018545.01.T01	MTR_7g063890	30.576	278	157	9	1	257	119	381	2.04e-23	99.4
MsG0480018545.01.T01	MTR_7g063890	36.449	107	52	4	160	252	30	134	8.95e-11	62.0
MsG0480018545.01.T01	MTR_7g062280	31.081	296	142	13	3	257	104	378	2.82e-23	98.6
MsG0480018545.01.T01	MTR_7g062300	30.182	275	137	10	9	253	111	360	1.81e-22	96.3
MsG0480018545.01.T01	MTR_7g062300	34.746	118	63	3	152	256	7	123	8.09e-11	62.4
MsG0480018545.01.T01	MTR_7g066580	30.303	264	131	9	5	251	91	318	7.54e-22	94.4
MsG0480018545.01.T01	MTR_7g066360	34.100	261	144	10	2	246	107	355	2.10e-21	93.2
MsG0480018545.01.T01	MTR_7g066360	36.792	106	54	2	158	250	15	120	2.02e-11	63.9
MsG0480018545.01.T01	MTR_7g066290	30.980	255	144	6	16	246	119	365	3.15e-21	92.4
MsG0480018545.01.T01	MTR_7g066290	45.588	68	32	1	157	219	15	82	3.28e-11	63.2
MsG0480018545.01.T01	MTR_7g063830	28.947	266	155	9	9	253	109	361	5.66e-20	89.0
MsG0480018545.01.T01	MTR_7g063880	31.556	225	124	10	3	219	105	307	1.62e-19	87.8
MsG0480018545.01.T01	MTR_7g063880	37.391	115	56	4	152	252	6	118	4.33e-14	72.0
MsG0480018545.01.T01	MTR_7g063840	28.409	264	154	9	9	253	109	356	2.47e-19	87.4
MsG0480018545.01.T01	MTR_7g066280	30.804	224	117	8	5	219	18	212	3.83e-19	86.7
MsG0480018545.01.T01	MTR_7g066480	31.739	230	132	6	3	220	110	326	6.08e-19	85.9
MsG0480018545.01.T01	MTR_7g063920	27.941	204	128	5	66	257	131	327	1.95e-17	81.6
MsG0480018545.01.T01	MTR_7g063820	30.986	284	150	13	3	260	103	366	5.65e-17	80.5
MsG0480018545.01.T01	MTR_7g063820	37.037	108	53	4	158	252	11	116	6.22e-11	62.8
MsG0480018545.01.T01	MTR_7g066680	33.750	160	89	3	108	254	37	192	8.05e-17	79.3
MsG0480018545.01.T01	MTR_3g007740	31.548	168	109	2	58	219	139	306	1.54e-16	79.0
MsG0480018545.01.T01	MTR_1g115450	41.667	84	41	1	152	227	2	85	1.44e-14	69.3
MsG0480018545.01.T01	MTR_1g115455	40.230	87	44	1	149	227	1	87	1.49e-14	71.6
MsG0480018545.01.T01	MTR_8g445920	42.647	68	39	0	152	219	5	72	2.58e-14	67.8
MsG0480018545.01.T01	MTR_8g044890	42.647	68	39	0	152	219	5	72	2.58e-14	67.8
MsG0480018545.01.T01	MTR_7g063670	28.444	225	135	7	9	219	102	314	3.58e-14	72.0
MsG0480018545.01.T01	MTR_8g445860	42.169	83	40	1	153	227	9	91	6.49e-14	69.7
MsG0480018545.01.T01	MTR_7g066310	27.519	258	98	10	5	244	103	289	4.64e-13	68.9
MsG0480018545.01.T01	MTR_7g063720	31.897	116	67	2	147	250	10	125	4.78e-13	67.4
MsG0480018545.01.T01	MTR_0150s0010	40.476	84	42	1	152	227	5	88	4.96e-13	67.4
MsG0480018545.01.T01	MTR_0150s0030	37.778	90	46	2	152	232	3	91	5.79e-13	66.6
MsG0480018545.01.T01	MTR_8g445910	38.889	90	45	2	152	232	3	91	1.86e-12	66.2
MsG0480018545.01.T01	MTR_8g044880	42.647	68	39	0	152	219	3	70	3.53e-12	65.5
MsG0480018545.01.T01	MTR_1g115440	31.034	116	65	1	152	252	6	121	1.94e-11	62.8
MsG0480018545.01.T01	MTR_2g029400	38.835	103	50	2	157	246	14	116	3.60e-11	63.2
MsG0480018545.01.T01	MTR_7g066490	30.120	166	98	5	61	219	157	311	6.62e-11	62.4
MsG0480018545.01.T01	MTR_1g115470	39.706	68	41	0	153	220	2	69	7.65e-11	62.4

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480018545.01.T01	AT5G01140	30.588	255	150	7	16	258	103	342	4.59e-26	106
MsG0480018545.01.T01	AT3G09110	33.186	226	129	8	5	219	105	319	9.85e-25	101
MsG0480018545.01.T01	AT5G01130	31.907	257	157	9	2	251	102	347	1.11e-24	102
MsG0480018545.01.T01	AT5G01120	31.179	263	158	9	9	251	108	367	6.31e-24	100
MsG0480018545.01.T01	AT3G09140	27.675	271	159	9	9	250	108	370	1.62e-21	94.0
MsG0480018545.01.T01	AT5G01150	29.185	233	141	6	1	219	103	325	7.09e-20	89.0
MsG0480018545.01.T01	AT5G43240	29.893	281	147	12	3	252	103	364	3.99e-19	87.0
MsG0480018545.01.T01	AT5G43240	29.893	281	147	12	3	252	103	364	3.99e-19	87.0
MsG0480018545.01.T01	AT5G43240	29.893	281	147	12	3	252	103	364	3.99e-19	87.0
MsG0480018545.01.T01	AT3G09120	31.140	228	127	10	2	211	98	313	1.90e-18	83.6
MsG0480018545.01.T01	AT3G09140	25.084	299	159	10	9	250	108	398	6.69e-17	80.5
MsG0480018545.01.T01	AT5G37320	29.167	240	141	9	3	219	104	337	1.49e-14	73.6
MsG0480018545.01.T01	AT5G43240	30.882	204	108	7	66	252	33	220	1.30e-13	70.5

Find 60 sgRNAs with CRISPR-Local

Find 96 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATCAACTGCCTCAAAATT+TGG	0.108204	4:+6424626	MsG0480018545.01.T01:CDS
CCAGAAACTTGAATCCATTT+TGG	0.133453	4:-6424686	None:intergenic
CCAAAATGGATTCAAGTTTC+TGG	0.178569	4:+6424686	MsG0480018545.01.T01:CDS
GCCTCTCACAAATACAATTT+TGG	0.184722	4:+6425533	MsG0480018545.01.T01:CDS
GAACACCCTACTTATTATTA+TGG	0.206601	4:+6425906	MsG0480018545.01.T01:CDS
CTTGCAGCTGTTGATGGAAT+TGG	0.234153	4:+6424752	MsG0480018545.01.T01:CDS
AGGTGGGTTGTCTTTAGTTT+TGG	0.263794	4:-6425565	None:intergenic
GCAAAGTAAATCTCAGAAAA+AGG	0.300596	4:+6425659	MsG0480018545.01.T01:CDS
GACTTACTTGCAGCTGTTGA+TGG	0.339065	4:+6424746	MsG0480018545.01.T01:CDS
TTGCAGCTGTTGATGGAATT+GGG	0.365599	4:+6424753	MsG0480018545.01.T01:CDS
AATAGTGCGGATGCCCAAAA+TGG	0.394854	4:+6424672	MsG0480018545.01.T01:CDS
AGCTTCCTTACCATGCCATT+AGG	0.401925	4:+6425726	MsG0480018545.01.T01:CDS
GGATTGAGTAACACAGAAAC+CGG	0.407217	4:-6425828	None:intergenic
CAAAACATTCATTGCACTTG+TGG	0.427044	4:+6424594	MsG0480018545.01.T01:CDS
CCTGTACCATAATAATAAGT+AGG	0.434424	4:-6425912	None:intergenic
CAGAAGTAAAATCGATGTTA+AGG	0.436014	4:+6425632	MsG0480018545.01.T01:CDS
ATTTGTGAGAGGCTCATTAG+AGG	0.437734	4:-6425523	None:intergenic
CCTGGTATAGCACCACAGTT+TGG	0.441678	4:+6425849	MsG0480018545.01.T01:CDS
GAGAGGCTCATTAGAGGTTA+AGG	0.444319	4:-6425517	None:intergenic
GGAATGTTGAGTGGCTGGTT+TGG	0.446551	4:-6425876	None:intergenic
GCCTCAAAATTTGGATTCTG+AGG	0.458830	4:+6424635	MsG0480018545.01.T01:CDS
ACACATCCAGCAAAAGAGTT+AGG	0.466364	4:-6425771	None:intergenic
GTTTCTGTGTTACTCAATCC+TGG	0.470852	4:+6425831	MsG0480018545.01.T01:CDS
GGATCCATTGTAAAGCTTGT+GGG	0.479392	4:+6425747	MsG0480018545.01.T01:CDS
TCAGTGCAATCAAGGACCTT+GGG	0.489701	4:-6425955	None:intergenic
CCTACTTATTATTATGGTAC+AGG	0.491753	4:+6425912	MsG0480018545.01.T01:CDS
AGCTTTACAATGGATCCTAA+TGG	0.492466	4:-6425741	None:intergenic
CCTGAGGAATGTTGAGTGGC+TGG	0.493538	4:-6425881	None:intergenic
ACTGTTGATGCAGATTGCTT+AGG	0.493675	4:-6425585	None:intergenic
CCAAACTGTGGTGCTATACC+AGG	0.500141	4:-6425849	None:intergenic
CACACACAACATTGGCAAGC+AGG	0.511161	4:+6424806	MsG0480018545.01.T01:CDS
TTCAGTGCAATCAAGGACCT+TGG	0.515168	4:-6425956	None:intergenic
GCCAAAATTGTATTTGTGAG+AGG	0.515201	4:-6425534	None:intergenic
TTACTTCTGTTACTGGTGCA+AGG	0.520158	4:-6425618	None:intergenic
AGGATCCATTGTAAAGCTTG+TGG	0.523652	4:+6425746	MsG0480018545.01.T01:CDS
CAGGAACATCAAAGAGAAAG+AGG	0.541388	4:+6425931	MsG0480018545.01.T01:CDS
GTTGATGCAGATTGCTTAGG+TGG	0.556543	4:-6425582	None:intergenic
CTGTACCATAATAATAAGTA+GGG	0.562506	4:-6425911	None:intergenic
CAGTGTGGAGAACTTGAACC+CGG	0.564774	4:+6425809	MsG0480018545.01.T01:CDS
CCTCAAAATTTGGATTCTGA+GGG	0.569344	4:+6424636	MsG0480018545.01.T01:CDS
TGGATCCTAATGGCATGGTA+AGG	0.579373	4:-6425731	None:intergenic
TACAATGGATCCTAATGGCA+TGG	0.582946	4:-6425736	None:intergenic
CCAGCCACTCAACATTCCTC+AGG	0.585126	4:+6425881	MsG0480018545.01.T01:CDS
TTGATGCAGATTGCTTAGGT+GGG	0.586176	4:-6425581	None:intergenic
AGGTCCCACAAGCTTTACAA+TGG	0.609111	4:-6425751	None:intergenic
GAAGTCAACAAAATCACCGT+TGG	0.609986	4:-6425697	None:intergenic
TCAAAGAGAAAGAGGACCCA+AGG	0.614618	4:+6425939	MsG0480018545.01.T01:CDS
TGCAGCTGTTGATGGAATTG+GGG	0.616569	4:+6424754	MsG0480018545.01.T01:CDS
CTTGAATGTTGATGATGACA+CGG	0.619606	4:+6424518	MsG0480018545.01.T01:CDS
GAGGAAGTCACACACAACAT+TGG	0.621785	4:+6424798	MsG0480018545.01.T01:CDS
AAGTAAGTCACAGACGAACA+TGG	0.624914	4:-6424732	None:intergenic
GTGATATATGCAGAAGCCAA+CGG	0.632346	4:+6425681	MsG0480018545.01.T01:CDS
TTCAGACTTGACTCAACTAG+AGG	0.639443	4:+6424779	MsG0480018545.01.T01:CDS
TAAGTAGGGTGTTCAACCTG+AGG	0.660168	4:-6425897	None:intergenic
TCAAGAGAATAGTAATAGTG+CGG	0.674033	4:+6424659	MsG0480018545.01.T01:CDS
ACACAACATTGGCAAGCAGG+AGG	0.678135	4:+6424809	MsG0480018545.01.T01:CDS
TGGTAATTTGTACAACAGTG+TGG	0.689995	4:+6425794	MsG0480018545.01.T01:CDS
TCAACCTGAGGAATGTTGAG+TGG	0.701201	4:-6425885	None:intergenic
GATTGAGTAACACAGAAACC+GGG	0.708506	4:-6425827	None:intergenic
TGGTTTGGACAACCAAACTG+TGG	0.745392	4:-6425861	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	TTTTATTGAAATCTTTATTA+TGG	+	Chr4:6424981-6425000	MsG0480018545.01.T01:intron	10.0%
!!	CAAACAAACAAAAAAAAAAA+AGG	-	Chr4:6425440-6425459	None:intergenic	15.0%
!!!	ATATAATAAAAAAAGAGTAC+AGG	+	Chr4:6425286-6425305	MsG0480018545.01.T01:intron	15.0%
!!!	ATTTAAGATCTATTGAATTT+TGG	-	Chr4:6425164-6425183	None:intergenic	15.0%
!!!	TTTAAGATCTATTGAATTTT+GGG	-	Chr4:6425163-6425182	None:intergenic	15.0%
!!!	TCACAAATATATGATTTTAG+AGG	-	Chr4:6425059-6425078	None:intergenic	20.0%
!!!	TTAAGATCTATTGAATTTTG+GGG	-	Chr4:6425162-6425181	None:intergenic	20.0%
!	CATTAATATTCACAATCTCA+GGG	+	Chr4:6425238-6425257	MsG0480018545.01.T01:intron	25.0%
!	CTGTACCATAATAATAAGTA+GGG	-	Chr4:6425914-6425933	None:intergenic	25.0%
!	TCAATATCTGTACATCAAAA+AGG	-	Chr4:6425482-6425501	None:intergenic	25.0%
!	TGAATGTTCATGATTAAGAT+TGG	-	Chr4:6424936-6424955	None:intergenic	25.0%
!!!	CAACTCATGATTTTAATTTG+TGG	+	Chr4:6424954-6424973	MsG0480018545.01.T01:intron	25.0%
!!!	TTAGTATGTCTTCTTGTTTT+GGG	-	Chr4:6425320-6425339	None:intergenic	25.0%
	AAATCAACTGCCTCAAAATT+TGG	+	Chr4:6424626-6424645	MsG0480018545.01.T01:CDS	30.0%
	AGGTAATTAAATGTGTTGTG+TGG	+	Chr4:6424829-6424848	MsG0480018545.01.T01:intron	30.0%
	CAGAAGTAAAATCGATGTTA+AGG	+	Chr4:6425632-6425651	MsG0480018545.01.T01:CDS	30.0%
	CCATTAATATTCACAATCTC+AGG	+	Chr4:6425237-6425256	MsG0480018545.01.T01:intron	30.0%
	CCTACTTATTATTATGGTAC+AGG	+	Chr4:6425912-6425931	MsG0480018545.01.T01:CDS	30.0%
	CCTGAGATTGTGAATATTAA+TGG	-	Chr4:6425240-6425259	None:intergenic	30.0%
	CCTGTACCATAATAATAAGT+AGG	-	Chr4:6425915-6425934	None:intergenic	30.0%
	GAACACCCTACTTATTATTA+TGG	+	Chr4:6425906-6425925	MsG0480018545.01.T01:CDS	30.0%
	GCAAAGTAAATCTCAGAAAA+AGG	+	Chr4:6425659-6425678	MsG0480018545.01.T01:CDS	30.0%
	TATATTTGTGACTGCAATTG+AGG	+	Chr4:6425068-6425087	MsG0480018545.01.T01:intron	30.0%
	TCAAGAGAATAGTAATAGTG+CGG	+	Chr4:6424659-6424678	MsG0480018545.01.T01:CDS	30.0%
!	CACACAAAAAACTTGTTTGA+TGG	-	Chr4:6424546-6424565	None:intergenic	30.0%
!	CAGAAACTTGAATCCATTTT+GGG	-	Chr4:6424688-6424707	None:intergenic	30.0%
!!	ATAGTGTATCAGTTAGTCTT+AGG	+	Chr4:6425134-6425153	MsG0480018545.01.T01:intron	30.0%
!!	ATCGATTTTACTTCTGTTAC+TGG	-	Chr4:6425628-6425647	None:intergenic	30.0%
!!	CTTAGTATGTCTTCTTGTTT+TGG	-	Chr4:6425321-6425340	None:intergenic	30.0%
	AGAACTACTACATTTCCTGA+CGG	-	Chr4:6425104-6425123	None:intergenic	35.0%
	AGCTTTACAATGGATCCTAA+TGG	-	Chr4:6425744-6425763	None:intergenic	35.0%
	CAAAACATTCATTGCACTTG+TGG	+	Chr4:6424594-6424613	MsG0480018545.01.T01:CDS	35.0%
	CCTCAAAATTTGGATTCTGA+GGG	+	Chr4:6424636-6424655	MsG0480018545.01.T01:CDS	35.0%
	GCCAAAATTGTATTTGTGAG+AGG	-	Chr4:6425537-6425556	None:intergenic	35.0%
	TCAGGAAATGTAGTAGTTCT+AGG	+	Chr4:6425104-6425123	MsG0480018545.01.T01:intron	35.0%
	TTGTGCCAAGTTTAAAGGTT+CGG	+	Chr4:6425206-6425225	MsG0480018545.01.T01:intron	35.0%
!	CCAAAATGGATTCAAGTTTC+TGG	+	Chr4:6424686-6424705	MsG0480018545.01.T01:CDS	35.0%
!	CCAGAAACTTGAATCCATTT+TGG	-	Chr4:6424689-6424708	None:intergenic	35.0%
!	GCCTCTCACAAATACAATTT+TGG	+	Chr4:6425533-6425552	MsG0480018545.01.T01:CDS	35.0%
!	TGGTAATTTGTACAACAGTG+TGG	+	Chr4:6425794-6425813	MsG0480018545.01.T01:CDS	35.0%
!!	CTTGAATGTTGATGATGACA+CGG	+	Chr4:6424518-6424537	MsG0480018545.01.T01:CDS	35.0%
!!	GATTTTAGAGGTTTCCACAA+CGG	-	Chr4:6425047-6425066	None:intergenic	35.0%
!!!	TTTTGAGGCAGTTGATTTGT+TGG	-	Chr4:6424624-6424643	None:intergenic	35.0%
	AAGTAAGTCACAGACGAACA+TGG	-	Chr4:6424735-6424754	None:intergenic	40.0%
	ACACATCCAGCAAAAGAGTT+AGG	-	Chr4:6425774-6425793	None:intergenic	40.0%
	ACTGTTGATGCAGATTGCTT+AGG	-	Chr4:6425588-6425607	None:intergenic	40.0%
	AGGATCCATTGTAAAGCTTG+TGG	+	Chr4:6425746-6425765	MsG0480018545.01.T01:CDS	40.0%
	ATTTGTGAGAGGCTCATTAG+AGG	-	Chr4:6425526-6425545	None:intergenic	40.0%
	CAGGAACATCAAAGAGAAAG+AGG	+	Chr4:6425931-6425950	MsG0480018545.01.T01:CDS	40.0%
	GAACTACTACATTTCCTGAC+GGG	-	Chr4:6425103-6425122	None:intergenic	40.0%
	GAAGTCAACAAAATCACCGT+TGG	-	Chr4:6425700-6425719	None:intergenic	40.0%
	GATTGAGTAACACAGAAACC+GGG	-	Chr4:6425830-6425849	None:intergenic	40.0%
	GCCTCAAAATTTGGATTCTG+AGG	+	Chr4:6424635-6424654	MsG0480018545.01.T01:CDS	40.0%
	GGATCCATTGTAAAGCTTGT+GGG	+	Chr4:6425747-6425766	MsG0480018545.01.T01:CDS	40.0%
	GGATTGAGTAACACAGAAAC+CGG	-	Chr4:6425831-6425850	None:intergenic	40.0%
	GTGATATATGCAGAAGCCAA+CGG	+	Chr4:6425681-6425700	MsG0480018545.01.T01:CDS	40.0%
	TACAATGGATCCTAATGGCA+TGG	-	Chr4:6425739-6425758	None:intergenic	40.0%
	TCCTTCCGAACCTTTAAACT+TGG	-	Chr4:6425214-6425233	None:intergenic	40.0%
	TTACTTCTGTTACTGGTGCA+AGG	-	Chr4:6425621-6425640	None:intergenic	40.0%
	TTCAGACTTGACTCAACTAG+AGG	+	Chr4:6424779-6424798	MsG0480018545.01.T01:CDS	40.0%
	TTGATGCAGATTGCTTAGGT+GGG	-	Chr4:6425584-6425603	None:intergenic	40.0%
!	AACTCTTTTGCTGGATGTGT+TGG	+	Chr4:6425774-6425793	MsG0480018545.01.T01:CDS	40.0%
!	CCCTCAGAATCCAAATTTTG+AGG	-	Chr4:6424639-6424658	None:intergenic	40.0%
!	GTAGCTTGTGCCAAGTTTAA+AGG	+	Chr4:6425201-6425220	MsG0480018545.01.T01:intron	40.0%
!	GTTTCTGTGTTACTCAATCC+TGG	+	Chr4:6425831-6425850	MsG0480018545.01.T01:CDS	40.0%
!	TTGCAGCTGTTGATGGAATT+GGG	+	Chr4:6424753-6424772	MsG0480018545.01.T01:CDS	40.0%
!!!	AGGTGGGTTGTCTTTAGTTT+TGG	-	Chr4:6425568-6425587	None:intergenic	40.0%
	AATAGTGCGGATGCCCAAAA+TGG	+	Chr4:6424672-6424691	MsG0480018545.01.T01:CDS	45.0%
	AGCTTCCTTACCATGCCATT+AGG	+	Chr4:6425726-6425745	MsG0480018545.01.T01:CDS	45.0%
	AGGTCCCACAAGCTTTACAA+TGG	-	Chr4:6425754-6425773	None:intergenic	45.0%
	GACTTACTTGCAGCTGTTGA+TGG	+	Chr4:6424746-6424765	MsG0480018545.01.T01:CDS	45.0%
	GAGAGGCTCATTAGAGGTTA+AGG	-	Chr4:6425520-6425539	None:intergenic	45.0%
	GAGGAAGTCACACACAACAT+TGG	+	Chr4:6424798-6424817	MsG0480018545.01.T01:CDS	45.0%
	GATAAATGCGCCCACAACTT+CGG	+	Chr4:6425013-6425032	MsG0480018545.01.T01:intron	45.0%
	GCCAAGTTTAAAGGTTCGGA+AGG	+	Chr4:6425210-6425229	MsG0480018545.01.T01:intron	45.0%
	GGCATCATAACCGAAGTTGT+GGG	-	Chr4:6425026-6425045	None:intergenic	45.0%
	GTTGATGCAGATTGCTTAGG+TGG	-	Chr4:6425585-6425604	None:intergenic	45.0%
	TCAAAGAGAAAGAGGACCCA+AGG	+	Chr4:6425939-6425958	MsG0480018545.01.T01:CDS	45.0%
	TCAACCTGAGGAATGTTGAG+TGG	-	Chr4:6425888-6425907	None:intergenic	45.0%
	TGGATCCTAATGGCATGGTA+AGG	-	Chr4:6425734-6425753	None:intergenic	45.0%
!	CTTGCAGCTGTTGATGGAAT+TGG	+	Chr4:6424752-6424771	MsG0480018545.01.T01:CDS	45.0%
!	TAAGTAGGGTGTTCAACCTG+AGG	-	Chr4:6425900-6425919	None:intergenic	45.0%
!	TGCAGCTGTTGATGGAATTG+GGG	+	Chr4:6424754-6424773	MsG0480018545.01.T01:CDS	45.0%
!	TGGTTTGGACAACCAAACTG+TGG	-	Chr4:6425864-6425883	None:intergenic	45.0%
	ACACAACATTGGCAAGCAGG+AGG	+	Chr4:6424809-6424828	MsG0480018545.01.T01:CDS	50.0%
	CACACACAACATTGGCAAGC+AGG	+	Chr4:6424806-6424825	MsG0480018545.01.T01:CDS	50.0%
	CAGTGTGGAGAACTTGAACC+CGG	+	Chr4:6425809-6425828	MsG0480018545.01.T01:CDS	50.0%
	CCTGGTATAGCACCACAGTT+TGG	+	Chr4:6425849-6425868	MsG0480018545.01.T01:CDS	50.0%
	CGGCATCATAACCGAAGTTG+TGG	-	Chr4:6425027-6425046	None:intergenic	50.0%
	CTTCGGTTATGATGCCGTTG+TGG	+	Chr4:6425030-6425049	MsG0480018545.01.T01:intron	50.0%
!	GGAATGTTGAGTGGCTGGTT+TGG	-	Chr4:6425879-6425898	None:intergenic	50.0%
!	GTGGGACCTAACTCTTTTGC+TGG	+	Chr4:6425765-6425784	MsG0480018545.01.T01:CDS	50.0%
!!	CCAAACTGTGGTGCTATACC+AGG	-	Chr4:6425852-6425871	None:intergenic	50.0%
	CCAGCCACTCAACATTCCTC+AGG	+	Chr4:6425881-6425900	MsG0480018545.01.T01:CDS	55.0%
	CCTGAGGAATGTTGAGTGGC+TGG	-	Chr4:6425884-6425903	None:intergenic	55.0%
	TGAGGCATGTTTCACCCGTC+AGG	+	Chr4:6425086-6425105	MsG0480018545.01.T01:intron	55.0%

Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	6424507	6425968	6424507	ID=MsG0480018545.01;Name=MsG0480018545.01
Chr4	mRNA	6424507	6425968	6424507	ID=MsG0480018545.01.T01;Parent=MsG0480018545.01;Name=MsG0480018545.01.T01;_AED=0.34;_eAED=0.34;_QI=0\|0\|0\|1\|1\|1\|2\|0\|265
Chr4	exon	6424507	6424830	6424507	ID=MsG0480018545.01.T01:exon:26667;Parent=MsG0480018545.01.T01
Chr4	exon	6425495	6425968	6425495	ID=MsG0480018545.01.T01:exon:26668;Parent=MsG0480018545.01.T01
Chr4	CDS	6424507	6424830	6424507	ID=MsG0480018545.01.T01:cds;Parent=MsG0480018545.01.T01
Chr4	CDS	6425495	6425968	6425495	ID=MsG0480018545.01.T01:cds;Parent=MsG0480018545.01.T01

Gene Sequence

>MsG0480018545.01.T01

ATGAAGCTGTTCTTGAATGTTGATGATGACACGGAACCATCAAACAAGTTTTTTGTGTGTGATTCTTGCAACAAGTTCACTACTTTTCAAAACATTCATTGCACTTGTGGAAAACCAACAAATCAACTGCCTCAAAATTTGGATTCTGAGGGTCAAGAGAATAGTAATAGTGCGGATGCCCAAAATGGATTCAAGTTTCTGGTGTCTGATGATTTGAAGATTGTGCCATGTTCGTCTGTGACTTACTTGCAGCTGTTGATGGAATTGGGGTATTCAGACTTGACTCAACTAGAGGAAGTCACACACAACATTGGCAAGCAGGAGATATTGAAACTACTCAAGTATACCTTAACCTCTAATGAGCCTCTCACAAATACAATTTTGGCAAGTAGCTCCAAAACTAAAGACAACCCACCTAAGCAATCTGCATCAACAGTTAGAGTAATGCCTTGCACCAGTAACAGAAGTAAAATCGATGTTAAGGTAGTGCAAAGTAAATCTCAGAAAAAGGTGATATATGCAGAAGCCAACGGTGATTTTGTTGACTTCATTTTTAGCTTCCTTACCATGCCATTAGGATCCATTGTAAAGCTTGTGGGACCTAACTCTTTTGCTGGATGTGTTGGTAATTTGTACAACAGTGTGGAGAACTTGAACCCGGTTTCTGTGTTACTCAATCCTGGTATAGCACCACAGTTTGGTTGTCCAAACCAGCCACTCAACATTCCTCAGGTTGAACACCCTACTTATTATTATGGTACAGGAACATCAAAGAGAAAGAGGACCCAAGGTCCTTGA

Protein sequence

>MsG0480018545.01.T01

MKLFLNVDDDTEPSNKFFVCDSCNKFTTFQNIHCTCGKPTNQLPQNLDSEGQENSNSADAQNGFKFLVSDDLKIVPCSSVTYLQLLMELGYSDLTQLEEVTHNIGKQEILKLLKYTLTSNEPLTNTILASSSKTKDNPPKQSASTVRVMPCTSNRSKIDVKVVQSKSQKKVIYAEANGDFVDFIFSFLTMPLGSIVKLVGPNSFAGCVGNLYNSVENLNPVSVLLNPGIAPQFGCPNQPLNIPQVEHPTYYYGTGTSKRKRTQGP*