AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480018760.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480018760.01.T01 MTR_4g017410 53.476 374 117 9 1 317 89 462 1.76e-117 348
MsG0480018760.01.T01 MTR_4g017610 52.139 374 123 4 1 321 91 461 1.78e-115 342
MsG0480018760.01.T01 MTR_4g017830 50.000 386 116 8 8 317 95 479 3.45e-113 338
MsG0480018760.01.T01 MTR_4g017550 50.515 388 117 9 1 317 68 451 4.29e-110 328
MsG0480018760.01.T01 MTR_4g019340 49.351 385 105 9 6 317 124 491 1.42e-109 328
MsG0480018760.01.T01 MTR_4g017440 48.964 386 127 10 1 317 96 480 1.26e-102 310
MsG0480018760.01.T01 MTR_4g017470 43.257 393 109 8 1 316 92 447 1.27e-85 266
MsG0480018760.01.T01 MTR_4g019310 40.373 161 86 6 1 153 86 244 6.49e-26 107
MsG0480018760.01.T01 MTR_4g019310 37.795 127 72 2 197 317 342 467 5.49e-18 84.7
MsG0480018760.01.T01 MTR_7g066570 26.823 384 185 14 7 313 90 454 1.86e-23 101
MsG0480018760.01.T01 MTR_7g066340 34.839 155 84 5 7 151 88 235 8.85e-21 92.8
MsG0480018760.01.T01 MTR_3g065200 26.446 363 211 14 2 324 64 410 9.59e-20 89.7
MsG0480018760.01.T01 MTR_7g066350 32.461 191 114 6 7 188 85 269 3.49e-18 85.1
MsG0480018760.01.T01 MTR_1g014060 27.134 328 173 12 7 313 76 358 1.01e-17 83.6
MsG0480018760.01.T01 MTR_7g066260 34.416 154 86 6 7 151 91 238 1.24e-17 83.6
MsG0480018760.01.T01 MTR_7g058710 32.099 162 87 6 4 151 73 225 2.16e-17 83.2
MsG0480018760.01.T01 MTR_7g066410 30.093 216 118 8 2 188 81 292 1.17e-16 80.9
MsG0480018760.01.T01 MTR_7g066360 29.107 347 193 14 7 313 90 423 1.23e-16 80.9
MsG0480018760.01.T01 MTR_7g066480 27.139 339 198 12 2 317 87 399 3.39e-16 79.3
MsG0480018760.01.T01 MTR_7g066400 32.461 191 106 9 7 188 72 248 7.01e-16 78.6
MsG0480018760.01.T01 MTR_7g063880 26.954 371 196 16 2 313 82 436 1.92e-15 77.0
MsG0480018760.01.T01 MTR_7g063890 31.818 154 91 4 4 151 100 245 3.22e-15 76.6
MsG0480018760.01.T01 MTR_7g063900 33.974 156 86 6 4 151 83 229 6.31e-15 75.5
MsG0480018760.01.T01 MTR_7g066290 26.744 344 188 11 7 313 91 407 6.60e-15 75.5
MsG0480018760.01.T01 MTR_7g063840 26.542 373 189 16 8 313 87 441 2.55e-14 73.9
MsG0480018760.01.T01 MTR_7g066430 32.704 159 93 5 2 151 75 228 1.18e-12 68.9
MsG0480018760.01.T01 MTR_1g041315 30.846 201 116 8 7 188 90 286 2.24e-12 67.8
MsG0480018760.01.T01 MTR_7g012680 31.795 195 81 11 7 185 90 248 2.47e-12 67.8
MsG0480018760.01.T01 MTR_7g058700 29.240 171 84 7 9 151 583 744 6.39e-12 67.0
MsG0480018760.01.T01 MTR_7g063820 32.000 200 99 10 8 186 86 269 9.98e-12 65.9
MsG0480018760.01.T01 MTR_7g062280 29.167 168 96 6 2 151 81 243 4.20e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480018760.01.T01 AT5G43240 37.500 168 89 6 2 156 80 244 8.85e-22 96.3
MsG0480018760.01.T01 AT5G43240 37.500 168 89 6 2 156 80 244 8.85e-22 96.3
MsG0480018760.01.T01 AT5G43240 37.500 168 89 6 2 156 80 244 8.85e-22 96.3
MsG0480018760.01.T01 AT5G01120 33.918 171 104 4 2 164 80 249 4.74e-21 94.0
MsG0480018760.01.T01 AT5G01130 26.954 371 186 14 2 316 80 421 1.21e-19 89.7
MsG0480018760.01.T01 AT5G01140 34.161 161 95 5 2 157 64 218 1.18e-18 86.7
MsG0480018760.01.T01 AT3G09120 33.742 163 89 6 2 151 76 232 7.22e-18 83.2
MsG0480018760.01.T01 AT3G09140 35.057 174 93 6 2 156 80 252 7.36e-18 84.3
MsG0480018760.01.T01 AT3G09110 34.545 165 92 6 2 158 80 236 1.06e-17 83.2
MsG0480018760.01.T01 AT5G01150 36.129 155 92 3 2 151 80 232 1.59e-16 80.5
MsG0480018760.01.T01 AT3G09140 30.198 202 93 7 2 156 80 280 2.21e-13 71.2
MsG0480018760.01.T01 AT5G37320 31.515 165 97 6 2 151 81 244 3.14e-11 64.3

Find 71 sgRNAs with CRISPR-Local

Find 131 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCTATTACAAATACAATTT+TGG 0.077846 4:-9474610 MsG0480018760.01.T01:CDS
CCCAAAATTGTATTTGTAAT+AGG 0.221679 4:+9474609 None:intergenic
AAATTCTTAGGTTGTCTATT+AGG 0.255481 4:+9475393 None:intergenic
TAATAGACAACCTAAGAATT+TGG 0.261898 4:-9475391 MsG0480018760.01.T01:CDS
GTGGGTTGTGGTATTAAATA+AGG 0.297283 4:+9474250 None:intergenic
CTCTAACTACTGATGCAAAT+TGG 0.299041 4:+9474553 None:intergenic
ATCTCAACTCAGACGATGTT+TGG 0.331962 4:-9475588 None:intergenic
CTTAGAGATGTTGGTTCCAT+TGG 0.338874 4:-9475259 MsG0480018760.01.T01:CDS
CCACAACCCACGTATTATTA+TGG 0.345905 4:-9474238 MsG0480018760.01.T01:CDS
GTGAAGAGAGCAACATTATA+TGG 0.349402 4:-9474085 MsG0480018760.01.T01:CDS
CGGCCCGTATCCAAATTCTT+AGG 0.353895 4:+9475381 None:intergenic
AGGCAAAACTTAGCAGAAAC+TGG 0.372974 4:+9474037 None:intergenic
GGTATTAAATAAGGAATGTT+GGG 0.379876 4:+9474259 None:intergenic
AATTCTTCACAAGGATTCCT+TGG 0.390278 4:+9475534 None:intergenic
AATCCCACAGCGCCTTCTCT+TGG 0.395694 4:+9474109 None:intergenic
CAATGGAACCAACATCTCTA+AGG 0.402119 4:+9475260 None:intergenic
ACTGATGCAAATTGGTTAGC+TGG 0.412013 4:+9474561 None:intergenic
TTAGAGATGTTGGTTCCATT+GGG 0.416438 4:-9475258 MsG0480018760.01.T01:CDS
TGGTATTAAATAAGGAATGT+TGG 0.424654 4:+9474258 None:intergenic
AAGAATTTGGATACGGGCCG+GGG 0.431114 4:-9475378 MsG0480018760.01.T01:CDS
CATTGGTGAATTTGAGGTAA+AGG 0.432182 4:-9473957 MsG0480018760.01.T01:CDS
ATCCCACAGCGCCTTCTCTT+GGG 0.434305 4:+9474110 None:intergenic
TAAGAATTTGGATACGGGCC+GGG 0.434440 4:-9475379 MsG0480018760.01.T01:CDS
GTTGAGTTCCTTAGAGATGT+TGG 0.445404 4:-9475268 MsG0480018760.01.T01:CDS
GATAAGCATTGGTGAATTTG+AGG 0.462994 4:-9473963 MsG0480018760.01.T01:CDS
CAAAACCTTGATTGCACCTG+TGG 0.476027 4:-9475423 MsG0480018760.01.T01:CDS
CTGGTATAGCACCACAACTT+AGG 0.481431 4:-9474297 MsG0480018760.01.T01:CDS
GACTATTATCCTACAAAAGA+AGG 0.481572 4:-9474190 MsG0480018760.01.T01:CDS
AGGATTAAGTACACAGAAGT+AGG 0.482322 4:+9474318 None:intergenic
TTCAAGGTCGTTGATTGCAC+TGG 0.491294 4:-9474134 MsG0480018760.01.T01:CDS
AAGGAACTCAACATGGAACT+TGG 0.499089 4:+9475279 None:intergenic
AACAAATGTTGCTGCGTCCA+AGG 0.504062 4:-9475551 MsG0480018760.01.T01:CDS
GGAGTCTTCGTTAGAGAAAG+TGG 0.504992 4:-9475339 MsG0480018760.01.T01:CDS
CCATAATAATACGTGGGTTG+TGG 0.507333 4:+9474238 None:intergenic
CTAAGTTGTGGTGCTATACC+AGG 0.515459 4:+9474298 None:intergenic
TTCTTAGGTTGTCTATTAGG+AGG 0.515531 4:+9475396 None:intergenic
CATCTCTAAGGAACTCAACA+TGG 0.531180 4:+9475272 None:intergenic
TACTTCTGTGTACTTAATCC+TGG 0.540942 4:-9474316 MsG0480018760.01.T01:CDS
TGGTAAAATCTTCAAATCAT+CGG 0.545386 4:+9475299 None:intergenic
CTGATGCAAATTGGTTAGCT+GGG 0.547375 4:+9474562 None:intergenic
CTGTCGACCATAATAATACG+TGG 0.548759 4:+9474231 None:intergenic
ACAACCTAAGAATTTGGATA+CGG 0.549258 4:-9475385 MsG0480018760.01.T01:CDS
TCTGTTCTTTCAGATATGAA+AGG 0.549535 4:+9474017 None:intergenic
TCTTGACGATCTTGAAGTGA+AGG 0.559099 4:-9473987 MsG0480018760.01.T01:CDS
CTAAGAATTTGGATACGGGC+CGG 0.563009 4:-9475380 MsG0480018760.01.T01:CDS
CACTTGAGGCATAATTCCCC+CGG 0.572600 4:+9475361 None:intergenic
GACCCAAGAGAAGGCGCTGT+GGG 0.589843 4:-9474112 MsG0480018760.01.T01:CDS
TTCATGCATAATTCTTCACA+AGG 0.597426 4:+9475525 None:intergenic
AGAATTTGGATACGGGCCGG+GGG 0.604267 4:-9475377 MsG0480018760.01.T01:CDS
GTATTAAATAAGGAATGTTG+GGG 0.604790 4:+9474260 None:intergenic
GGATTAAGTACACAGAAGTA+GGG 0.614570 4:+9474319 None:intergenic
CAACCTAAGAATTTGGATAC+GGG 0.615212 4:-9475384 MsG0480018760.01.T01:CDS
TTAAATAAGGAATGTTGGGG+GGG 0.615798 4:+9474263 None:intergenic
TTTCTGATATCATCGGGACA+AGG 0.617619 4:+9474525 None:intergenic
GAAGAAGTCACACACAACAT+TGG 0.621785 4:-9475213 MsG0480018760.01.T01:CDS
ATTGCACTGGACCCAAGAGA+AGG 0.623682 4:-9474121 MsG0480018760.01.T01:CDS
GTCAAGTCTGCATAACCCAA+TGG 0.629435 4:+9475243 None:intergenic
AGAGCAACATTATATGGTGT+AGG 0.631695 4:-9474079 MsG0480018760.01.T01:CDS
ACACAACATTGGCAAGCAAG+AGG 0.636713 4:-9475202 MsG0480018760.01.T01:intron
CTGGTTGGACACCTAAGTTG+TGG 0.643117 4:+9474286 None:intergenic
TTCACTTCAAGATCGTCAAG+AGG 0.643323 4:+9473989 None:intergenic
TCTAACGAAGACTCCACTTG+AGG 0.644921 4:+9475347 None:intergenic
AGGCGAAGATATACTTGAGG+AGG 0.647256 4:+9474640 None:intergenic
GAGAGGCGAAGATATACTTG+AGG 0.649287 4:+9474637 None:intergenic
GAAGTGAAGGTGATAAGCAT+TGG 0.654807 4:-9473974 MsG0480018760.01.T01:CDS
ATTTGTAATAGGCTCATGAG+AGG 0.655380 4:+9474620 None:intergenic
GGACCCAAGAGAAGGCGCTG+TGG 0.662998 4:-9474113 MsG0480018760.01.T01:CDS
TGTCGACCATAATAATACGT+GGG 0.685398 4:+9474232 None:intergenic
ATTAAATAAGGAATGTTGGG+GGG 0.696245 4:+9474262 None:intergenic
GTTGTTGAATGTTGATGACA+CGG 0.700176 4:-9475499 MsG0480018760.01.T01:CDS
TATTAAATAAGGAATGTTGG+GGG 0.703620 4:+9474261 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTAAAGAGAATATATTAAAA+AGG - Chr4:9474613-9474632 MsG0480018760.01.T01:CDS 15.0%
!!! TTTTTAATAGTATTTTACCT+AGG - Chr4:9474754-9474773 MsG0480018760.01.T01:intron 15.0%
!! ATTGTAAGAATAACAGTTTA+AGG + Chr4:9474819-9474838 None:intergenic 20.0%
!! CTATACAAAATGTTAAAACA+TGG + Chr4:9474842-9474861 None:intergenic 20.0%
!!! ATGAACTAATTTTAAGTTCA+AGG - Chr4:9475360-9475379 MsG0480018760.01.T01:CDS 20.0%
!!! CCTATTACAAATACAATTTT+GGG - Chr4:9474901-9474920 MsG0480018760.01.T01:intron 20.0%
!!! TATCTCTAAAAACATTATTG+CGG - Chr4:9474471-9474490 MsG0480018760.01.T01:intron 20.0%
! AATAAGAGAAGAAACATGTT+AGG - Chr4:9474659-9474678 MsG0480018760.01.T01:intron 25.0%
! ATCTTTATTGTGGATAAATG+CGG - Chr4:9474424-9474443 MsG0480018760.01.T01:intron 25.0%
! CCCAAAATTGTATTTGTAAT+AGG + Chr4:9474904-9474923 None:intergenic 25.0%
! GGTATTAAATAAGGAATGTT+GGG + Chr4:9475254-9475273 None:intergenic 25.0%
! GTAAGAAAAAGTCAATGTAA+TGG + Chr4:9474339-9474358 None:intergenic 25.0%
! GTATTAAATAAGGAATGTTG+GGG + Chr4:9475253-9475272 None:intergenic 25.0%
! TAATAGACAACCTAAGAATT+TGG - Chr4:9474119-9474138 MsG0480018760.01.T01:CDS 25.0%
! TATGTTGTGAATCTTTATTG+TGG - Chr4:9474414-9474433 MsG0480018760.01.T01:intron 25.0%
! TATTAAATAAGGAATGTTGG+GGG + Chr4:9475252-9475271 None:intergenic 25.0%
! TGGTAAAATCTTCAAATCAT+CGG + Chr4:9474214-9474233 None:intergenic 25.0%
! TGGTATTAAATAAGGAATGT+TGG + Chr4:9475255-9475274 None:intergenic 25.0%
!! AAATTCTTAGGTTGTCTATT+AGG + Chr4:9474120-9474139 None:intergenic 25.0%
!! ATGCTAGCCAAAAAAATTTT+TGG + Chr4:9474783-9474802 None:intergenic 25.0%
!! GCCTATTACAAATACAATTT+TGG - Chr4:9474900-9474919 MsG0480018760.01.T01:intron 25.0%
!! TGCTAGCCAAAAAAATTTTT+GGG + Chr4:9474782-9474801 None:intergenic 25.0%
!!! AAAAAAATTTTTGGGAACCT+AGG + Chr4:9474774-9474793 None:intergenic 25.0%
!!! ATCCATTTTTCTGATATCAT+CGG + Chr4:9474995-9475014 None:intergenic 25.0%
!!! GTTTTTAGAGATATTCACAT+CGG + Chr4:9474464-9474483 None:intergenic 25.0%
!!! TAGGTTCCCAAAAATTTTTT+TGG - Chr4:9474773-9474792 MsG0480018760.01.T01:intron 25.0%
!!! TGACTTTTTCTTACTTACAT+AGG - Chr4:9474345-9474364 MsG0480018760.01.T01:intron 25.0%
AAGAAACATGTTAGGATAAG+AGG - Chr4:9474667-9474686 MsG0480018760.01.T01:intron 30.0%
ACAACCTAAGAATTTGGATA+CGG - Chr4:9474125-9474144 MsG0480018760.01.T01:CDS 30.0%
ATAAGTCTGCTAGTAATATC+AGG - Chr4:9474549-9474568 MsG0480018760.01.T01:CDS 30.0%
ATTAAATAAGGAATGTTGGG+GGG + Chr4:9475251-9475270 None:intergenic 30.0%
GACTATTATCCTACAAAAGA+AGG - Chr4:9475320-9475339 MsG0480018760.01.T01:CDS 30.0%
TCATAAGTTAGCATAATTGC+AGG + Chr4:9474577-9474596 None:intergenic 30.0%
TCTGTTCTTTCAGATATGAA+AGG + Chr4:9475496-9475515 None:intergenic 30.0%
TCTTACTTACATAGGATCTT+AGG - Chr4:9474353-9474372 MsG0480018760.01.T01:intron 30.0%
TTCATGCATAATTCTTCACA+AGG + Chr4:9473988-9474007 None:intergenic 30.0%
! AGAAAGTGGACAAAAGTTTT+TGG - Chr4:9474185-9474204 MsG0480018760.01.T01:CDS 30.0%
! GAAATCAATCCTTCTTTTGT+AGG + Chr4:9475332-9475351 None:intergenic 30.0%
! TAGGATAAGAGGTATAGTTA+GGG - Chr4:9474678-9474697 MsG0480018760.01.T01:intron 30.0%
! TTAGGATAAGAGGTATAGTT+AGG - Chr4:9474677-9474696 MsG0480018760.01.T01:intron 30.0%
!! TCCATTTTTCTGATATCATC+GGG + Chr4:9474994-9475013 None:intergenic 30.0%
!!! ATTTTTTTGGCTAGCATTAG+TGG - Chr4:9474786-9474805 MsG0480018760.01.T01:intron 30.0%
AATTCTTCACAAGGATTCCT+TGG + Chr4:9473979-9473998 None:intergenic 35.0%
AGAGCAACATTATATGGTGT+AGG - Chr4:9475431-9475450 MsG0480018760.01.T01:CDS 35.0%
AGGATTAAGTACACAGAAGT+AGG + Chr4:9475195-9475214 None:intergenic 35.0%
AGGTCCTAAAAGCTTTACAA+TGG + Chr4:9475120-9475139 None:intergenic 35.0%
AGTTAGGGAAGTTAAGTAGT+TGG - Chr4:9474693-9474712 MsG0480018760.01.T01:intron 35.0%
ATAACTGAAACCTCAAGTGA+GGG + Chr4:9474397-9474416 None:intergenic 35.0%
ATTTGTAATAGGCTCATGAG+AGG + Chr4:9474893-9474912 None:intergenic 35.0%
CAACCTAAGAATTTGGATAC+GGG - Chr4:9474126-9474145 MsG0480018760.01.T01:CDS 35.0%
CTCTAACTACTGATGCAAAT+TGG + Chr4:9474960-9474979 None:intergenic 35.0%
GGATTAAGTACACAGAAGTA+GGG + Chr4:9475194-9475213 None:intergenic 35.0%
GTGAAGAGAGCAACATTATA+TGG - Chr4:9475425-9475444 MsG0480018760.01.T01:CDS 35.0%
TACTTCTGTGTACTTAATCC+TGG - Chr4:9475194-9475213 MsG0480018760.01.T01:intron 35.0%
TAGCAGACTTATATCCCAAA+GGG + Chr4:9474541-9474560 None:intergenic 35.0%
TATATCTATGCAGAAGCGAA+CGG - Chr4:9475047-9475066 MsG0480018760.01.T01:intron 35.0%
TCCCGATGATATCAGAAAAA+TGG - Chr4:9474990-9475009 MsG0480018760.01.T01:intron 35.0%
TGTCGACCATAATAATACGT+GGG + Chr4:9475281-9475300 None:intergenic 35.0%
TTAAATAAGGAATGTTGGGG+GGG + Chr4:9475250-9475269 None:intergenic 35.0%
! CATTGGTGAATTTGAGGTAA+AGG - Chr4:9475553-9475572 MsG0480018760.01.T01:CDS 35.0%
! GTGGGTTGTGGTATTAAATA+AGG + Chr4:9475263-9475282 None:intergenic 35.0%
! TTCTTAGGTTGTCTATTAGG+AGG + Chr4:9474117-9474136 None:intergenic 35.0%
!! GATAAGCATTGGTGAATTTG+AGG - Chr4:9475547-9475566 MsG0480018760.01.T01:CDS 35.0%
!! GTTGTTGAATGTTGATGACA+CGG - Chr4:9474011-9474030 MsG0480018760.01.T01:CDS 35.0%
!! TTAGAGATGTTGGTTCCATT+GGG - Chr4:9474252-9474271 MsG0480018760.01.T01:CDS 35.0%
AAGGAACTCAACATGGAACT+TGG + Chr4:9474234-9474253 None:intergenic 40.0%
ACTGATGCAAATTGGTTAGC+TGG + Chr4:9474952-9474971 None:intergenic 40.0%
AGAACTATGCTTCACCCTTT+GGG - Chr4:9474524-9474543 MsG0480018760.01.T01:CDS 40.0%
AGGCAAAACTTAGCAGAAAC+TGG + Chr4:9475476-9475495 None:intergenic 40.0%
CAATGGAACCAACATCTCTA+AGG + Chr4:9474253-9474272 None:intergenic 40.0%
CATAACTGAAACCTCAAGTG+AGG + Chr4:9474398-9474417 None:intergenic 40.0%
CCACAACCCACGTATTATTA+TGG - Chr4:9475272-9475291 MsG0480018760.01.T01:CDS 40.0%
CTAGCAGACTTATATCCCAA+AGG + Chr4:9474542-9474561 None:intergenic 40.0%
CTGTCGACCATAATAATACG+TGG + Chr4:9475282-9475301 None:intergenic 40.0%
GAAGAAGTCACACACAACAT+TGG - Chr4:9474297-9474316 MsG0480018760.01.T01:CDS 40.0%
GAAGTGAAGGTGATAAGCAT+TGG - Chr4:9475536-9475555 MsG0480018760.01.T01:CDS 40.0%
GAGGGTTCATGGTTTAACAA+TGG + Chr4:9474379-9474398 None:intergenic 40.0%
GTTGAGTTCCTTAGAGATGT+TGG - Chr4:9474242-9474261 MsG0480018760.01.T01:CDS 40.0%
TAGAACTATGCTTCACCCTT+TGG - Chr4:9474523-9474542 MsG0480018760.01.T01:CDS 40.0%
TAGGGAAGTTAAGTAGTTGG+AGG - Chr4:9474696-9474715 MsG0480018760.01.T01:intron 40.0%
TCTTGACGATCTTGAAGTGA+AGG - Chr4:9475523-9475542 MsG0480018760.01.T01:CDS 40.0%
TTCACTTCAAGATCGTCAAG+AGG + Chr4:9475524-9475543 None:intergenic 40.0%
TTTCTGATATCATCGGGACA+AGG + Chr4:9474988-9475007 None:intergenic 40.0%
! CATCTCTAAGGAACTCAACA+TGG + Chr4:9474241-9474260 None:intergenic 40.0%
! CCATAATAATACGTGGGTTG+TGG + Chr4:9475275-9475294 None:intergenic 40.0%
! CTGATGCAAATTGGTTAGCT+GGG + Chr4:9474951-9474970 None:intergenic 40.0%
! GGGTCCATTGTAAAGCTTTT+AGG - Chr4:9475113-9475132 MsG0480018760.01.T01:intron 40.0%
! TCTATTAGGAGGTTTTCCAC+AGG + Chr4:9474106-9474125 None:intergenic 40.0%
!! CTTAGAGATGTTGGTTCCAT+TGG - Chr4:9474251-9474270 MsG0480018760.01.T01:CDS 40.0%
!! GTACAAGAGTGTTCAGAACT+TGG - Chr4:9475167-9475186 MsG0480018760.01.T01:intron 40.0%
!! TTTTGGCTAGCATTAGTGGT+GGG - Chr4:9474790-9474809 MsG0480018760.01.T01:intron 40.0%
!!! TTTTTGGCTAGCATTAGTGG+TGG - Chr4:9474789-9474808 MsG0480018760.01.T01:intron 40.0%
AAACCATGAACCCTCACTTG+AGG - Chr4:9474384-9474403 MsG0480018760.01.T01:intron 45.0%
AAACCTCAAGTGAGGGTTCA+TGG + Chr4:9474390-9474409 None:intergenic 45.0%
AACAAATGTTGCTGCGTCCA+AGG - Chr4:9473959-9473978 MsG0480018760.01.T01:CDS 45.0%
ACACAACATTGGCAAGCAAG+AGG - Chr4:9474308-9474327 MsG0480018760.01.T01:CDS 45.0%
ACACATCCAGCAAAAGAGTC+AGG + Chr4:9475140-9475159 None:intergenic 45.0%
AGCTTCCTTACCATGCCATT+GGG - Chr4:9475092-9475111 MsG0480018760.01.T01:intron 45.0%
AGCTTTACAATGGACCCCAA+TGG + Chr4:9475110-9475129 None:intergenic 45.0%
AGGCGAAGATATACTTGAGG+AGG + Chr4:9474873-9474892 None:intergenic 45.0%
CAAAACCTTGATTGCACCTG+TGG - Chr4:9474087-9474106 MsG0480018760.01.T01:CDS 45.0%
CTAAGAATTTGGATACGGGC+CGG - Chr4:9474130-9474149 MsG0480018760.01.T01:CDS 45.0%
CTGGTATAGCACCACAACTT+AGG - Chr4:9475213-9475232 MsG0480018760.01.T01:CDS 45.0%
GAGAGGCGAAGATATACTTG+AGG + Chr4:9474876-9474895 None:intergenic 45.0%
GGAGTCTTCGTTAGAGAAAG+TGG - Chr4:9474171-9474190 MsG0480018760.01.T01:CDS 45.0%
GTCAAGTCTGCATAACCCAA+TGG + Chr4:9474270-9474289 None:intergenic 45.0%
TAAGAATTTGGATACGGGCC+GGG - Chr4:9474131-9474150 MsG0480018760.01.T01:CDS 45.0%
TAGCTTCCTTACCATGCCAT+TGG - Chr4:9475091-9475110 MsG0480018760.01.T01:intron 45.0%
TCTAACGAAGACTCCACTTG+AGG + Chr4:9474166-9474185 None:intergenic 45.0%
! GTTTTCCACAGGTGCAATCA+AGG + Chr4:9474095-9474114 None:intergenic 45.0%
! TTAGGACCTGACTCTTTTGC+TGG - Chr4:9475131-9475150 MsG0480018760.01.T01:intron 45.0%
! TTCAAGGTCGTTGATTGCAC+TGG - Chr4:9475376-9475395 MsG0480018760.01.T01:CDS 45.0%
!! CTAAGTTGTGGTGCTATACC+AGG + Chr4:9475215-9475234 None:intergenic 45.0%
AAGAATTTGGATACGGGCCG+GGG - Chr4:9474132-9474151 MsG0480018760.01.T01:CDS 50.0%
ATTGCACTGGACCCAAGAGA+AGG - Chr4:9475389-9475408 MsG0480018760.01.T01:CDS 50.0%
ATTGTGGATAAATGCGGCCG+TGG - Chr4:9474430-9474449 MsG0480018760.01.T01:intron 50.0%
CACTTGAGGCATAATTCCCC+CGG + Chr4:9474152-9474171 None:intergenic 50.0%
CGGCCCGTATCCAAATTCTT+AGG + Chr4:9474132-9474151 None:intergenic 50.0%
CTGGTTGGACACCTAAGTTG+TGG + Chr4:9475227-9475246 None:intergenic 50.0%
GCTTCCTTACCATGCCATTG+GGG - Chr4:9475093-9475112 MsG0480018760.01.T01:intron 50.0%
TACAATGGACCCCAATGGCA+TGG + Chr4:9475105-9475124 None:intergenic 50.0%
TCACATCGGCATTGCAACCA+CGG + Chr4:9474450-9474469 None:intergenic 50.0%
AATCCCACAGCGCCTTCTCT+TGG + Chr4:9475404-9475423 None:intergenic 55.0%
AGAATTTGGATACGGGCCGG+GGG - Chr4:9474133-9474152 MsG0480018760.01.T01:CDS 55.0%
ATAAGGAATGTTGGGGGGGC+TGG + Chr4:9475246-9475265 None:intergenic 55.0%
ATCCCACAGCGCCTTCTCTT+GGG + Chr4:9475403-9475422 None:intergenic 55.0%
CGGGGGAATTATGCCTCAAG+TGG - Chr4:9474150-9474169 MsG0480018760.01.T01:CDS 55.0%
TGGACCCCAATGGCATGGTA+AGG + Chr4:9475100-9475119 None:intergenic 55.0%
!! GACCCAAGAGAAGGCGCTGT+GGG - Chr4:9475398-9475417 MsG0480018760.01.T01:CDS 60.0%
! GGAATGTTGGGGGGGCTGGT+TGG + Chr4:9475242-9475261 None:intergenic 65.0%
!! GGACCCAAGAGAAGGCGCTG+TGG - Chr4:9475397-9475416 MsG0480018760.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr4 gene 9473937 9475595 9473937 ID=MsG0480018760.01;Name=MsG0480018760.01
Chr4 mRNA 9473937 9475595 9473937 ID=MsG0480018760.01.T01;Parent=MsG0480018760.01;Name=MsG0480018760.01.T01;_AED=0.41;_eAED=0.41;_QI=0|0|0|1|1|1|3|0|324
Chr4 exon 9475203 9475595 9475203 ID=MsG0480018760.01.T01:exon:2661;Parent=MsG0480018760.01.T01
Chr4 exon 9474502 9474670 9474502 ID=MsG0480018760.01.T01:exon:2660;Parent=MsG0480018760.01.T01
Chr4 exon 9473937 9474349 9473937 ID=MsG0480018760.01.T01:exon:2659;Parent=MsG0480018760.01.T01
Chr4 CDS 9475203 9475595 9475203 ID=MsG0480018760.01.T01:cds;Parent=MsG0480018760.01.T01
Chr4 CDS 9474502 9474670 9474502 ID=MsG0480018760.01.T01:cds;Parent=MsG0480018760.01.T01
Chr4 CDS 9473937 9474349 9473937 ID=MsG0480018760.01.T01:cds;Parent=MsG0480018760.01.T01
Gene Sequence

>MsG0480018760.01.T01

ATGTTTGGAACAACTCTGTGCAAACAAATGTTGCTGCGTCCAAGGAATCCTTGTGAAGAATTATGCATGAAGCTGTTGTTGAATGTTGATGACACGGAGACATCAAGTAAATTTTATGTGTGTGATTCTTGTTACAAGTTCACTAATTTTCAAAACCTTGATTGCACCTGTGGAAAACCTCCTAATAGACAACCTAAGAATTTGGATACGGGCCGGGGGAATTATGCCTCAAGTGGAGTCTTCGTTAGAGAAAGTGGACAAAAGTTTTTGGTGTCCGATGATTTGAAGATTTTACCAAGTTCCATGTTGAGTTCCTTAGAGATGTTGGTTCCATTGGGTTATGCAGACTTGACTGAACTAGAAGAAGTCACACACAACATTGGCAAGCAAGAGATATTGAACCTCCTCAAGTATATCTTCGCCTCTCATGAGCCTATTACAAATACAATTTTGGGAAGTAGCTCAAACAACAGAAACAACCCAGCTAACCAATTTGCATCAGTAGTTAGAGTAACACCTTGTCCCGATGATATCAGAAAAATGGATGTTAAAGTAATGCAAAAACTTGGACCCTACTTCTGTGTACTTAATCCTGGTATAGCACCACAACTTAGGTGTCCAACCAGCCCCCCCAACATTCCTTATTTAATACCACAACCCACGTATTATTATGGTCGACAGAAAAATGATGATCACTATGACTATTATCCTACAAAAGAAGGATTGATTTCTAAGTCATATGAACTAATTTTAAGTTCAAGGTCGTTGATTGCACTGGACCCAAGAGAAGGCGCTGTGGGATTTGTGAAGAGAGCAACATTATATGGTGTAGGAGATGATCTAAAAGTAAAACCAGTTTCTGCTAAGTTTTGCCTTTCATATCTGAAAGAACAGAATCTTCCTCTTGACGATCTTGAAGTGAAGGTGATAAGCATTGGTGAATTTGAGGTAAAGGTTGCTCTTATATTAGACTAA
Protein sequence

>MsG0480018760.01.T01

MFGTTLCKQMLLRPRNPCEELCMKLLLNVDDTETSSKFYVCDSCYKFTNFQNLDCTCGKPPNRQPKNLDTGRGNYASSGVFVRESGQKFLVSDDLKILPSSMLSSLEMLVPLGYADLTELEEVTHNIGKQEILNLLKYIFASHEPITNTILGSSSNNRNNPANQFASVVRVTPCPDDIRKMDVKVMQKLGPYFCVLNPGIAPQLRCPTSPPNIPYLIPQPTYYYGRQKNDDHYDYYPTKEGLISKSYELILSSRSLIALDPREGAVGFVKRATLYGVGDDLKVKPVSAKFCLSYLKEQNLPLDDLEVKVISIGEFEVKVALILD*