AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780039038.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780039038.01.T01 MTR_7g066340 81.381 478 86 2 1 477 1 476 0.0 771
MsG0780039038.01.T01 MTR_7g066310 76.939 477 39 5 1 477 1 406 0.0 701
MsG0780039038.01.T01 MTR_7g066350 66.222 450 142 5 5 449 2 446 0.0 570
MsG0780039038.01.T01 MTR_7g066280 67.735 437 67 3 91 477 1 413 0.0 561
MsG0780039038.01.T01 MTR_1g041315 61.538 455 152 7 1 436 1 451 0.0 534
MsG0780039038.01.T01 MTR_7g066260 57.464 489 186 8 6 477 9 492 3.38e-177 506
MsG0780039038.01.T01 MTR_7g066570 55.800 500 171 9 6 469 8 493 4.32e-167 483
MsG0780039038.01.T01 MTR_7g066400 56.438 466 154 9 1 449 1 434 2.07e-164 472
MsG0780039038.01.T01 MTR_7g066360 54.141 495 191 12 1 476 1 478 2.39e-153 445
MsG0780039038.01.T01 MTR_7g066290 55.385 455 161 10 9 453 12 434 1.37e-147 429
MsG0780039038.01.T01 MTR_7g012680 53.747 467 171 9 6 454 8 447 3.86e-147 428
MsG0780039038.01.T01 MTR_7g058710 48.682 493 196 10 1 452 1 477 2.73e-137 404
MsG0780039038.01.T01 MTR_7g066580 44.948 485 173 13 18 452 1 441 6.89e-119 356
MsG0780039038.01.T01 MTR_7g066580 29.183 257 135 9 3 233 206 441 1.06e-14 76.6
MsG0780039038.01.T01 MTR_7g066430 41.922 489 229 12 12 452 4 485 8.54e-114 345
MsG0780039038.01.T01 MTR_7g066430 29.289 239 150 5 3 230 248 478 3.38e-13 72.0
MsG0780039038.01.T01 MTR_7g058700 46.875 448 162 9 24 452 531 921 5.90e-112 352
MsG0780039038.01.T01 MTR_2g029400 44.255 470 153 10 6 440 8 403 5.28e-109 329
MsG0780039038.01.T01 MTR_2g029400 30.808 198 108 7 255 445 7 182 6.38e-11 64.7
MsG0780039038.01.T01 MTR_7g066410 40.079 509 229 12 13 452 11 512 1.05e-107 330
MsG0780039038.01.T01 MTR_7g066410 32.218 239 125 9 12 230 284 505 6.37e-18 86.7
MsG0780039038.01.T01 MTR_7g066480 39.474 456 223 8 11 457 15 426 2.66e-97 300
MsG0780039038.01.T01 MTR_7g062300 38.622 479 253 11 1 448 1 469 4.90e-94 293
MsG0780039038.01.T01 MTR_7g062280 37.805 492 246 13 5 448 2 481 4.42e-93 291
MsG0780039038.01.T01 MTR_7g066490 39.556 450 219 9 12 459 16 414 4.11e-92 286
MsG0780039038.01.T01 MTR_7g063660 38.622 479 242 12 11 452 8 471 2.00e-90 284
MsG0780039038.01.T01 MTR_7g063900 41.344 491 230 15 5 450 3 480 2.76e-88 278
MsG0780039038.01.T01 MTR_7g063880 38.509 483 241 17 5 453 3 463 2.39e-86 273
MsG0780039038.01.T01 MTR_7g063820 38.557 485 249 13 5 450 2 476 5.44e-86 272
MsG0780039038.01.T01 MTR_7g063840 38.302 483 243 17 1 448 1 463 8.55e-83 264
MsG0780039038.01.T01 MTR_7g063920 35.789 475 231 9 5 452 3 430 3.21e-81 258
MsG0780039038.01.T01 MTR_7g063830 36.853 464 250 11 5 452 2 438 4.06e-81 258
MsG0780039038.01.T01 MTR_7g063890 38.272 486 243 12 11 452 26 498 1.79e-80 259
MsG0780039038.01.T01 MTR_3g007740 37.797 463 239 14 11 452 8 442 2.96e-79 254
MsG0780039038.01.T01 MTR_3g065200 36.344 465 204 14 10 439 1 408 1.93e-76 247
MsG0780039038.01.T01 MTR_4g019310 33.333 498 258 15 9 448 5 486 2.65e-75 245
MsG0780039038.01.T01 MTR_4g019310 32.636 239 126 12 13 234 267 487 1.96e-15 79.0
MsG0780039038.01.T01 MTR_4g017440 34.269 499 252 13 13 449 15 499 5.10e-73 239
MsG0780039038.01.T01 MTR_4g019340 34.382 477 252 12 13 441 39 502 2.75e-72 237
MsG0780039038.01.T01 MTR_4g019340 30.263 228 138 5 5 226 290 502 2.43e-16 81.6
MsG0780039038.01.T01 MTR_4g017830 33.464 511 271 15 1 452 1 501 3.67e-71 235
MsG0780039038.01.T01 MTR_4g017830 27.547 265 152 9 5 239 254 508 5.73e-13 71.2
MsG0780039038.01.T01 MTR_4g017410 33.665 502 252 15 5 448 2 480 7.84e-71 233
MsG0780039038.01.T01 MTR_7g063670 35.153 458 253 10 13 450 16 449 1.12e-70 232
MsG0780039038.01.T01 MTR_7g066680 46.154 299 98 5 214 449 37 335 6.96e-69 224
MsG0780039038.01.T01 MTR_4g017610 33.954 483 249 14 15 449 16 476 2.72e-68 226
MsG0780039038.01.T01 MTR_1g014060 55.963 218 92 3 21 237 9 223 5.67e-68 223
MsG0780039038.01.T01 MTR_1g014060 46.857 175 79 2 292 452 210 384 1.26e-34 134
MsG0780039038.01.T01 MTR_4g017470 31.791 497 235 11 13 448 13 466 1.73e-64 216
MsG0780039038.01.T01 MTR_4g017470 28.626 262 147 12 12 245 234 483 1.83e-13 72.8
MsG0780039038.01.T01 MTR_4g017470 27.801 241 135 8 253 471 1 224 2.08e-13 72.8
MsG0780039038.01.T01 MTR_7g066390 50.562 178 54 3 303 476 1 148 5.78e-46 157
MsG0780039038.01.T01 MTR_4g017550 31.102 463 251 18 41 448 20 469 1.07e-45 166
MsG0780039038.01.T01 MTR_4g017550 27.273 253 138 7 5 230 233 466 3.62e-14 75.1
MsG0780039038.01.T01 MTR_7g062270 43.103 174 92 4 13 183 11 180 2.51e-36 138
MsG0780039038.01.T01 MTR_7g063720 33.491 212 124 3 256 452 17 226 1.62e-30 119
MsG0780039038.01.T01 MTR_7g063720 30.435 230 129 9 4 230 18 219 3.61e-19 87.0
MsG0780039038.01.T01 MTR_2g067310 44.509 173 56 5 23 195 58 190 2.69e-29 115
MsG0780039038.01.T01 MTR_8g023240 27.439 328 193 11 13 325 38 335 2.08e-27 115
MsG0780039038.01.T01 MTR_1g115440 34.728 239 133 7 11 236 10 238 3.27e-27 109
MsG0780039038.01.T01 MTR_7g063690 30.216 278 125 6 13 289 13 222 4.03e-27 109
MsG0780039038.01.T01 MTR_7g100420 32.036 334 172 12 155 452 83 397 3.09e-24 104
MsG0780039038.01.T01 MTR_7g100420 50.725 69 30 1 3 67 30 98 9.42e-12 67.0
MsG0780039038.01.T01 MTR_8g445860 30.864 243 150 6 4 237 5 238 2.07e-23 99.0
MsG0780039038.01.T01 MTR_7g063850 27.759 299 165 8 185 452 4 282 1.61e-22 97.8
MsG0780039038.01.T01 MTR_0150s0010 31.837 245 144 5 5 236 3 237 7.90e-22 94.7
MsG0780039038.01.T01 MTR_1g115455 28.629 248 146 8 5 237 2 233 8.66e-18 82.8
MsG0780039038.01.T01 MTR_4g019240 40.385 104 50 4 13 108 14 113 2.41e-14 71.6
MsG0780039038.01.T01 MTR_1g115450 41.667 84 44 1 12 95 7 85 4.68e-14 69.7
MsG0780039038.01.T01 MTR_1g115470 39.048 105 56 3 12 114 6 104 8.65e-14 73.6
MsG0780039038.01.T01 MTR_0150s0030 39.362 94 51 2 6 98 2 90 2.03e-13 69.7
MsG0780039038.01.T01 MTR_8g044880 40.206 97 52 2 6 101 2 93 4.59e-13 70.1
MsG0780039038.01.T01 MTR_8g445920 37.234 94 54 1 5 98 3 91 1.54e-12 64.3
MsG0780039038.01.T01 MTR_8g044890 37.234 94 54 1 5 98 3 91 1.54e-12 64.3
MsG0780039038.01.T01 MTR_8g445910 40.426 94 50 2 6 98 2 90 1.80e-12 68.2
MsG0780039038.01.T01 MTR_1g115435 26.531 245 137 9 12 246 7 218 7.57e-12 65.5
MsG0780039038.01.T01 MTR_7g063760 47.619 63 32 1 389 450 3 65 9.16e-12 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780039038.01.T01 AT5G01120 30.368 517 288 14 13 476 10 507 2.17e-63 214
MsG0780039038.01.T01 AT3G09140 30.040 506 294 11 5 458 2 499 8.44e-61 207
MsG0780039038.01.T01 AT5G43240 32.171 516 284 17 13 476 10 511 9.46e-60 204
MsG0780039038.01.T01 AT5G43240 32.171 516 284 17 13 476 10 511 9.46e-60 204
MsG0780039038.01.T01 AT5G43240 32.171 516 284 17 13 476 10 511 9.46e-60 204
MsG0780039038.01.T01 AT5G01140 30.364 494 285 12 12 476 9 472 1.07e-58 201
MsG0780039038.01.T01 AT5G01150 30.754 491 286 13 5 453 2 480 5.50e-57 197
MsG0780039038.01.T01 AT3G09140 28.383 532 297 11 5 458 2 527 1.47e-56 196
MsG0780039038.01.T01 AT5G01130 30.719 459 291 9 5 452 2 444 2.75e-52 183
MsG0780039038.01.T01 AT3G09110 33.333 327 208 5 5 327 2 322 3.22e-52 180
MsG0780039038.01.T01 AT3G09120 31.646 316 199 7 11 316 5 313 1.95e-40 147
MsG0780039038.01.T01 AT3G09120 26.407 231 123 8 259 446 3 229 3.85e-11 64.7
MsG0780039038.01.T01 AT5G37320 27.273 484 280 17 19 452 18 479 1.89e-37 143
MsG0780039038.01.T01 AT5G43240 30.571 350 195 11 165 476 28 367 1.06e-27 114

Find 76 sgRNAs with CRISPR-Local

Find 150 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCATTTCTTCCACATCATTT+AGG 0.106646 7:+57160831 None:intergenic
TCTTGTCCACCAAAACTCTT+AGG 0.174508 7:+57162146 None:intergenic
GATCCTAAATCCCCTATTTC+TGG 0.194829 7:-57160959 MsG0780039038.01.T01:CDS
CTAGCATATCCTCCAGAAAT+AGG 0.222209 7:+57160947 None:intergenic
AAGAAAACATACCTCTTTCT+TGG 0.258951 7:+57161556 None:intergenic
CCTCCAGAAATAGGGGATTT+AGG 0.261981 7:+57160956 None:intergenic
CATTTCTTCCACATCATTTA+GGG 0.277846 7:+57160832 None:intergenic
TGATCTTCTCAAATTGTCTT+TGG 0.284928 7:-57161425 MsG0780039038.01.T01:CDS
CAAAGTAACCCTAAGAGTTT+TGG 0.291026 7:-57162155 MsG0780039038.01.T01:CDS
ATTGAGTAGCATCTCCTTGC+AGG 0.299700 7:+57161928 None:intergenic
TAAGCGCCCGATGGGTTTAT+AGG 0.300844 7:+57161905 None:intergenic
CGGTATGCAAAATTGAAAAT+AGG 0.301037 7:-57161814 MsG0780039038.01.T01:CDS
TAGAGCACCATTAAAGATTA+TGG 0.313008 7:-57160927 MsG0780039038.01.T01:CDS
TTAACCTCCATTTGGTTACT+TGG 0.318360 7:+57161340 None:intergenic
ACCCATCGGGCGCTTATTGC+AGG 0.321290 7:-57161898 MsG0780039038.01.T01:CDS
CGATTTCCTTACTCAAAATC+AGG 0.328908 7:+57161726 None:intergenic
AAACTTGTCGTAACAACATT+TGG 0.329105 7:+57161650 None:intergenic
CTTGGTGATGTTGATATTAA+CGG 0.332558 7:+57161574 None:intergenic
TCTGTCACCATAATCTTTAA+TGG 0.356635 7:+57160920 None:intergenic
AATATTGAAGCAGTGAGATT+TGG 0.357605 7:-57162013 MsG0780039038.01.T01:CDS
AACCAAATGGAGGTTAATAT+TGG 0.358716 7:-57161334 MsG0780039038.01.T01:CDS
TAGCATATCCTCCAGAAATA+GGG 0.363628 7:+57160948 None:intergenic
TACCAATATTAACCTCCATT+TGG 0.389269 7:+57161332 None:intergenic
TCAGATTGAATAGAAATCAT+TGG 0.402682 7:+57161052 None:intergenic
TTAAATCTCCTTCAGAAGCT+TGG 0.404186 7:-57161629 MsG0780039038.01.T01:CDS
GGTACTGTTTGAGTTACTAT+AGG 0.405904 7:-57161793 MsG0780039038.01.T01:CDS
AAGTGGAAGTAGATCTGTTC+AGG 0.414712 7:-57159743 MsG0780039038.01.T01:CDS
AAAGGAACAGTCTGATGAAA+TGG 0.415600 7:-57161305 MsG0780039038.01.T01:CDS
TCAAAATCTGCCTTGACAAC+CGG 0.420103 7:-57160644 MsG0780039038.01.T01:CDS
AAGATATAAAATACCATCAA+TGG 0.423120 7:+57160871 None:intergenic
CCTAAATGATGTGGAAGAAA+TGG 0.433837 7:-57160831 MsG0780039038.01.T01:CDS
ACAGAGGTAGAATGACTTCA+AGG 0.442518 7:+57161844 None:intergenic
AATATGCAACACTGCTCCTA+AGG 0.452936 7:+57161186 None:intergenic
TCTGTTTGCTGAGGCAGATA+AGG 0.456755 7:-57162110 MsG0780039038.01.T01:CDS
CTTGTCCACCAAAACTCTTA+GGG 0.457678 7:+57162147 None:intergenic
TTTATATCTTGAAAGAATGA+AGG 0.466389 7:-57160858 MsG0780039038.01.T01:CDS
TTATAATTGTGTTTAGGTAT+CGG 0.468696 7:+57161010 None:intergenic
GGTTAATATTGGTAAAGAAA+AGG 0.492157 7:-57161323 MsG0780039038.01.T01:CDS
AGCTTACAAAAGAGAATCCT+TGG 0.499942 7:+57161161 None:intergenic
TCCTGCAATAAGCGCCCGAT+GGG 0.500940 7:+57161897 None:intergenic
GTTTAGGTATCGGTAATCTC+TGG 0.506285 7:+57161020 None:intergenic
TGAGTTCAGACAAGTGTTTG+AGG 0.507323 7:-57161105 MsG0780039038.01.T01:CDS
GATGCTTGCAATAGTACCTA+AGG 0.512187 7:+57162051 None:intergenic
TACTGTACTAACCTATGTAC+TGG 0.514263 7:+57160615 None:intergenic
CTCAATCCTATAAACCCATC+GGG 0.528295 7:-57161911 MsG0780039038.01.T01:CDS
TATCAACATCACCAAGAAAG+AGG 0.532453 7:-57161567 MsG0780039038.01.T01:intron
TTTCTATTCAATCTGAACTC+AGG 0.539211 7:-57161045 MsG0780039038.01.T01:CDS
GATTATGGTGACAGACGACT+TGG 0.540003 7:-57160912 MsG0780039038.01.T01:CDS
ACTCCAATGTCATCCATTGA+TGG 0.546893 7:-57160884 MsG0780039038.01.T01:CDS
ATATGCAACACTGCTCCTAA+GGG 0.554427 7:+57161187 None:intergenic
GGTCGTTAATGTTGGCAAGA+AGG 0.554959 7:-57160810 MsG0780039038.01.T01:CDS
CATTGACTCCAAGCTTCTGA+AGG 0.561296 7:+57161621 None:intergenic
ACCTATGTACTGGTTGAGAC+CGG 0.565014 7:+57160625 None:intergenic
CTGGTTGAGACCGGTTGTCA+AGG 0.565956 7:+57160634 None:intergenic
AGCATATCCTCCAGAAATAG+GGG 0.573043 7:+57160949 None:intergenic
TTAAATATAAATTCGGACAG+AGG 0.575858 7:+57161391 None:intergenic
TTCCTGCAATAAGCGCCCGA+TGG 0.577842 7:+57161896 None:intergenic
ACTCAATCCTATAAACCCAT+CGG 0.584196 7:-57161912 MsG0780039038.01.T01:CDS
GAAGAAATGGTCGTTAATGT+TGG 0.591749 7:-57160818 MsG0780039038.01.T01:CDS
ATACCATCAATGGATGACAT+TGG 0.597021 7:+57160881 None:intergenic
TTTGTCAACTTGTACAGCTG+AGG 0.600931 7:+57162174 None:intergenic
TGTTCCAAGTAACCAAATGG+AGG 0.609107 7:-57161344 MsG0780039038.01.T01:CDS
CAGAGGTAGAATGACTTCAA+GGG 0.609530 7:+57161845 None:intergenic
AAACAAAGTTCTGTTTGCTG+AGG 0.615217 7:-57162119 MsG0780039038.01.T01:CDS
GCAGTGTTGCATATTCTCCA+AGG 0.619271 7:-57161178 MsG0780039038.01.T01:CDS
ACCGGTCTCAACCAGTACAT+AGG 0.625446 7:-57160626 MsG0780039038.01.T01:intron
CGTTAATGTTGGCAAGAAGG+AGG 0.626814 7:-57160807 MsG0780039038.01.T01:intron
CCTAAATCCCCTATTTCTGG+AGG 0.628731 7:-57160956 MsG0780039038.01.T01:CDS
TTTCTTCCACATCATTTAGG+GGG 0.633920 7:+57160834 None:intergenic
ATTTCTTCCACATCATTTAG+GGG 0.634248 7:+57160833 None:intergenic
TCTACACTCACAAACCTGCA+AGG 0.640445 7:-57161942 MsG0780039038.01.T01:CDS
ATGCTTGCAATAGTACCTAA+GGG 0.654856 7:+57162052 None:intergenic
ATTCTACCTCTGTGAGAATG+CGG 0.676596 7:-57161834 MsG0780039038.01.T01:CDS
TATGCAACACTGCTCCTAAG+GGG 0.682165 7:+57161188 None:intergenic
TGCATACCGCATTCTCACAG+AGG 0.694761 7:+57161828 None:intergenic
AGGTACTATTGCAAGCATCG+TGG 0.724958 7:-57162047 MsG0780039038.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTGCTTTTTAAATATAAATT+CGG + Chr7:57160496-57160515 None:intergenic 10.0%
!!! TTTTGTTATTATTATAATGT+AGG + Chr7:57161309-57161328 None:intergenic 10.0%
!! ATTTGTTTATATAACCATTA+AGG - Chr7:57161616-57161635 MsG0780039038.01.T01:CDS 15.0%
!!! ACAATTTAATGGAATTTTTA+GGG - Chr7:57161441-57161460 MsG0780039038.01.T01:intron 15.0%
!!! TTTTCATTATAATTGTGTTT+AGG + Chr7:57160876-57160895 None:intergenic 15.0%
!! AACAAATCTAAGTGAATTAA+TGG + Chr7:57161603-57161622 None:intergenic 20.0%
!! AAGATATAAAATACCATCAA+TGG + Chr7:57161009-57161028 None:intergenic 20.0%
!! ATTTAGAAACCACAATTTAA+TGG - Chr7:57161430-57161449 MsG0780039038.01.T01:CDS 20.0%
!! CTAAAAATTCCATTAAATTG+TGG + Chr7:57161442-57161461 None:intergenic 20.0%
!! TATTATTATAATGTAGGATG+AGG + Chr7:57161303-57161322 None:intergenic 20.0%
!! TGAACTTTGGTTAAAAATAA+AGG - Chr7:57161388-57161407 MsG0780039038.01.T01:CDS 20.0%
!! TGTACATGAACATATAATAA+AGG + Chr7:57162107-57162126 None:intergenic 20.0%
!! TTATAATTGTGTTTAGGTAT+CGG + Chr7:57160870-57160889 None:intergenic 20.0%
!! TTATTATATGTTCATGTACA+TGG - Chr7:57162107-57162126 MsG0780039038.01.T01:CDS 20.0%
!! TTCTATCAAAATGTAATGAA+AGG - Chr7:57161888-57161907 MsG0780039038.01.T01:CDS 20.0%
!! TTTATATCTTGAAAGAATGA+AGG - Chr7:57161019-57161038 MsG0780039038.01.T01:CDS 20.0%
!! TTTGAGTAGATTAAAATAGT+CGG + Chr7:57161653-57161672 None:intergenic 20.0%
!!! CACAATTTAATGGAATTTTT+AGG - Chr7:57161440-57161459 MsG0780039038.01.T01:intron 20.0%
!!! TAAAAATAAAGGACTAGTAT+TGG - Chr7:57161399-57161418 MsG0780039038.01.T01:CDS 20.0%
! AATGAAAGGTAACCATATAT+TGG - Chr7:57161902-57161921 MsG0780039038.01.T01:CDS 25.0%
! AGGAATCAAAAATGTATTTG+TGG - Chr7:57160104-57160123 MsG0780039038.01.T01:intron 25.0%
! CAGATATTGAAGAATTATTG+AGG + Chr7:57160417-57160436 None:intergenic 25.0%
! CTCAATAATTCTTCAATATC+TGG - Chr7:57160415-57160434 MsG0780039038.01.T01:intron 25.0%
! GGTTAATATTGGTAAAGAAA+AGG - Chr7:57160554-57160573 MsG0780039038.01.T01:intron 25.0%
! TAGAAAAAGAAGAGAAGTAA+AGG - Chr7:57162000-57162019 MsG0780039038.01.T01:CDS 25.0%
! TCAATATGAAAATAGTATGC+AGG + Chr7:57161557-57161576 None:intergenic 25.0%
! TCAGATTGAATAGAAATCAT+TGG + Chr7:57160828-57160847 None:intergenic 25.0%
! TGTTTATATAACCATTAAGG+AGG - Chr7:57161619-57161638 MsG0780039038.01.T01:CDS 25.0%
! TTAAATATAAATTCGGACAG+AGG + Chr7:57160489-57160508 None:intergenic 25.0%
!! TTTTAATCTACTCAAATCGT+TGG - Chr7:57161657-57161676 MsG0780039038.01.T01:CDS 25.0%
!!! AAAAATCCTGATTTTGAGTA+AGG - Chr7:57160145-57160164 MsG0780039038.01.T01:intron 25.0%
!!! ATGAAAGTTGGTATATTTAG+TGG - Chr7:57161473-57161492 MsG0780039038.01.T01:intron 25.0%
!!! TACTATCTTTAGAATTTGAC+TGG - Chr7:57161526-57161545 MsG0780039038.01.T01:intron 25.0%
!!! TCAAAATCAGGATTTTTTCT+CGG + Chr7:57160142-57160161 None:intergenic 25.0%
!!! TGAAAGTTGGTATATTTAGT+GGG - Chr7:57161474-57161493 MsG0780039038.01.T01:intron 25.0%
AAACTTGTCGTAACAACATT+TGG + Chr7:57160230-57160249 None:intergenic 30.0%
AACCAAATGGAGGTTAATAT+TGG - Chr7:57160543-57160562 MsG0780039038.01.T01:intron 30.0%
AAGAAAACATACCTCTTTCT+TGG + Chr7:57160324-57160343 None:intergenic 30.0%
AAGAAACAATAAACGAAAGG+TGG - Chr7:57162023-57162042 MsG0780039038.01.T01:CDS 30.0%
AATATTGAAGCAGTGAGATT+TGG - Chr7:57159864-57159883 MsG0780039038.01.T01:intron 30.0%
ACAAGAGTTAAATATGTCGT+TGG + Chr7:57161501-57161520 None:intergenic 30.0%
AGAAACAATAAACGAAAGGT+GGG - Chr7:57162024-57162043 MsG0780039038.01.T01:CDS 30.0%
AGAACTTCAGAATATTGTAC+AGG + Chr7:57161779-57161798 None:intergenic 30.0%
AGGAAGAAACAATAAACGAA+AGG - Chr7:57162020-57162039 MsG0780039038.01.T01:CDS 30.0%
ATTTCTTCCACATCATTTAG+GGG + Chr7:57161047-57161066 None:intergenic 30.0%
CAACCACATGAAATCAAATT+TGG + Chr7:57161180-57161199 None:intergenic 30.0%
CATTTCTTCCACATCATTTA+GGG + Chr7:57161048-57161067 None:intergenic 30.0%
CGACATATTTAACTCTTGTT+TGG - Chr7:57161502-57161521 MsG0780039038.01.T01:intron 30.0%
CGGTATGCAAAATTGAAAAT+AGG - Chr7:57160063-57160082 MsG0780039038.01.T01:intron 30.0%
GGGTGATTAAAAATGAAAGT+TGG - Chr7:57161461-57161480 MsG0780039038.01.T01:intron 30.0%
TACCAATATTAACCTCCATT+TGG + Chr7:57160548-57160567 None:intergenic 30.0%
TCATATGAGCATCCAATATA+TGG + Chr7:57161917-57161936 None:intergenic 30.0%
TCTGTCACCATAATCTTTAA+TGG + Chr7:57160960-57160979 None:intergenic 30.0%
TGATCTTCTCAAATTGTCTT+TGG - Chr7:57160452-57160471 MsG0780039038.01.T01:intron 30.0%
TTATAACATTTGAGAGCAGT+TGG - Chr7:57161726-57161745 MsG0780039038.01.T01:CDS 30.0%
TTTCTATTCAATCTGAACTC+AGG - Chr7:57160832-57160851 MsG0780039038.01.T01:CDS 30.0%
! CTTCAATATCTGGTTTGAAT+AGG - Chr7:57160425-57160444 MsG0780039038.01.T01:intron 30.0%
! TAGAGCACCATTAAAGATTA+TGG - Chr7:57160950-57160969 MsG0780039038.01.T01:CDS 30.0%
! TCACCAAATTTGATTTCATG+TGG - Chr7:57161174-57161193 MsG0780039038.01.T01:CDS 30.0%
! TTTTGTTCCAAGTAACCAAA+TGG - Chr7:57160530-57160549 MsG0780039038.01.T01:intron 30.0%
!! CTGATTTTGAGTAAGGAAAT+CGG - Chr7:57160152-57160171 MsG0780039038.01.T01:intron 30.0%
!! CTTGGTGATGTTGATATTAA+CGG + Chr7:57160306-57160325 None:intergenic 30.0%
!!! ATGTAGGATGAGGTTTTTTT+TGG + Chr7:57161293-57161312 None:intergenic 30.0%
AAAGGAACAGTCTGATGAAA+TGG - Chr7:57160572-57160591 MsG0780039038.01.T01:intron 35.0%
ACTCAATCCTATAAACCCAT+CGG - Chr7:57159965-57159984 MsG0780039038.01.T01:intron 35.0%
AGCTTACAAAAGAGAATCCT+TGG + Chr7:57160719-57160738 None:intergenic 35.0%
ATACCATCAATGGATGACAT+TGG + Chr7:57160999-57161018 None:intergenic 35.0%
ATGCTTGCAATAGTACCTAA+GGG + Chr7:57159828-57159847 None:intergenic 35.0%
CATATGATCTAACGGTAATG+AGG - Chr7:57161930-57161949 MsG0780039038.01.T01:CDS 35.0%
CCATTTCTTCCACATCATTT+AGG + Chr7:57161049-57161068 None:intergenic 35.0%
CCTAAATGATGTGGAAGAAA+TGG - Chr7:57161046-57161065 MsG0780039038.01.T01:CDS 35.0%
CGATTTCCTTACTCAAAATC+AGG + Chr7:57160154-57160173 None:intergenic 35.0%
GAAGAAATGGTCGTTAATGT+TGG - Chr7:57161059-57161078 MsG0780039038.01.T01:CDS 35.0%
TACTGTACTAACCTATGTAC+TGG + Chr7:57161265-57161284 None:intergenic 35.0%
TAGCATATCCTCCAGAAATA+GGG + Chr7:57160932-57160951 None:intergenic 35.0%
TAGTACTACACGTAACAAGT+CGG + Chr7:57161865-57161884 None:intergenic 35.0%
TATATGTTCATGTACATGGC+AGG - Chr7:57162111-57162130 MsG0780039038.01.T01:CDS 35.0%
TATCAACATCACCAAGAAAG+AGG - Chr7:57160310-57160329 MsG0780039038.01.T01:intron 35.0%
TGGATGCTCATATGATCTAA+CGG - Chr7:57161922-57161941 MsG0780039038.01.T01:CDS 35.0%
TTAAATCTCCTTCAGAAGCT+TGG - Chr7:57160248-57160267 MsG0780039038.01.T01:intron 35.0%
TTAACCTCCATTTGGTTACT+TGG + Chr7:57160540-57160559 None:intergenic 35.0%
TTTCTTCCACATCATTTAGG+GGG + Chr7:57161046-57161065 None:intergenic 35.0%
! AAACAAAGTTCTGTTTGCTG+AGG - Chr7:57159758-57159777 MsG0780039038.01.T01:intron 35.0%
! AGCTTTTTAACATTGCCCTT+AGG - Chr7:57159810-57159829 MsG0780039038.01.T01:intron 35.0%
! ATTTGATTTCATGTGGTTGC+AGG - Chr7:57161181-57161200 MsG0780039038.01.T01:CDS 35.0%
! CAAAGTAACCCTAAGAGTTT+TGG - Chr7:57159722-57159741 MsG0780039038.01.T01:CDS 35.0%
! GGTACTGTTTGAGTTACTAT+AGG - Chr7:57160084-57160103 MsG0780039038.01.T01:intron 35.0%
! TTTGATTTCATGTGGTTGCA+GGG - Chr7:57161182-57161201 MsG0780039038.01.T01:CDS 35.0%
!! GAGTGTGTTAGTCTTCATTT+AGG - Chr7:57161100-57161119 MsG0780039038.01.T01:CDS 35.0%
!! TATTCTGAAGTTCTGAAGTC+TGG - Chr7:57161785-57161804 MsG0780039038.01.T01:CDS 35.0%
!! TGTTAGTCTTCATTTAGGAC+AGG - Chr7:57161105-57161124 MsG0780039038.01.T01:CDS 35.0%
!!! TTCTACTTTTGGCTTCTTCA+GGG + Chr7:57162184-57162203 None:intergenic 35.0%
!!! TTTCTACTTTTGGCTTCTTC+AGG + Chr7:57162185-57162204 None:intergenic 35.0%
AAGTGGAAGTAGATCTGTTC+AGG - Chr7:57162134-57162153 MsG0780039038.01.T01:CDS 40.0%
AATATGCAACACTGCTCCTA+AGG + Chr7:57160694-57160713 None:intergenic 40.0%
ACAATAAACGAAAGGTGGGA+AGG - Chr7:57162028-57162047 MsG0780039038.01.T01:CDS 40.0%
ACAGAGGTAGAATGACTTCA+AGG + Chr7:57160036-57160055 None:intergenic 40.0%
ACTCCAATGTCATCCATTGA+TGG - Chr7:57160993-57161012 MsG0780039038.01.T01:CDS 40.0%
AGCATATCCTCCAGAAATAG+GGG + Chr7:57160931-57160950 None:intergenic 40.0%
ATATGCAACACTGCTCCTAA+GGG + Chr7:57160693-57160712 None:intergenic 40.0%
ATTCTACCTCTGTGAGAATG+CGG - Chr7:57160043-57160062 MsG0780039038.01.T01:intron 40.0%
CAGAGGTAGAATGACTTCAA+GGG + Chr7:57160035-57160054 None:intergenic 40.0%
CGAACATGTCACATGAACTT+TGG - Chr7:57161375-57161394 MsG0780039038.01.T01:CDS 40.0%
CGGTAATTTCTCCTCCTTAA+TGG + Chr7:57161633-57161652 None:intergenic 40.0%
CTAGCATATCCTCCAGAAAT+AGG + Chr7:57160933-57160952 None:intergenic 40.0%
CTCAATCCTATAAACCCATC+GGG - Chr7:57159966-57159985 MsG0780039038.01.T01:intron 40.0%
CTTGTCCACCAAAACTCTTA+GGG + Chr7:57159733-57159752 None:intergenic 40.0%
GATCCTAAATCCCCTATTTC+TGG - Chr7:57160918-57160937 MsG0780039038.01.T01:CDS 40.0%
GATGCTTGCAATAGTACCTA+AGG + Chr7:57159829-57159848 None:intergenic 40.0%
TCAAAATCTGCCTTGACAAC+CGG - Chr7:57161233-57161252 MsG0780039038.01.T01:CDS 40.0%
TCGGTTACTACTGTTGTTAC+AGG + Chr7:57161846-57161865 None:intergenic 40.0%
TCTAACGGTAATGAGGAGTA+AGG - Chr7:57161937-57161956 MsG0780039038.01.T01:CDS 40.0%
TCTTGTCCACCAAAACTCTT+AGG + Chr7:57159734-57159753 None:intergenic 40.0%
TGAGTTCAGACAAGTGTTTG+AGG - Chr7:57160772-57160791 MsG0780039038.01.T01:intron 40.0%
TGTTCCAAGTAACCAAATGG+AGG - Chr7:57160533-57160552 MsG0780039038.01.T01:intron 40.0%
TTCATGTGACATGTTCGAAG+TGG + Chr7:57161372-57161391 None:intergenic 40.0%
TTGGCAAGAAGGAGGTAAAA+AGG - Chr7:57161078-57161097 MsG0780039038.01.T01:CDS 40.0%
TTTGTCAACTTGTACAGCTG+AGG + Chr7:57159706-57159725 None:intergenic 40.0%
! AGTTTTCTCACTTTCCCCTT+AGG - Chr7:57160675-57160694 MsG0780039038.01.T01:CDS 40.0%
!! AGTAACCCTAAGAGTTTTGG+TGG - Chr7:57159725-57159744 MsG0780039038.01.T01:CDS 40.0%
!! GTTTAGGTATCGGTAATCTC+TGG + Chr7:57160860-57160879 None:intergenic 40.0%
!!! TCTACTTTTGGCTTCTTCAG+GGG + Chr7:57162183-57162202 None:intergenic 40.0%
AAGGAGAGTGAGAGTCATGA+AGG - Chr7:57162051-57162070 MsG0780039038.01.T01:CDS 45.0%
ACGGTAATGAGGAGTAAGGA+CGG - Chr7:57161941-57161960 MsG0780039038.01.T01:CDS 45.0%
AGGAGAGTGAGAGTCATGAA+GGG - Chr7:57162052-57162071 MsG0780039038.01.T01:CDS 45.0%
ATTGAGTAGCATCTCCTTGC+AGG + Chr7:57159952-57159971 None:intergenic 45.0%
CCTCCAGAAATAGGGGATTT+AGG + Chr7:57160924-57160943 None:intergenic 45.0%
CGTTAATGTTGGCAAGAAGG+AGG - Chr7:57161070-57161089 MsG0780039038.01.T01:CDS 45.0%
GATTATGGTGACAGACGACT+TGG - Chr7:57160965-57160984 MsG0780039038.01.T01:CDS 45.0%
GCAGTGTTGCATATTCTCCA+AGG - Chr7:57160699-57160718 MsG0780039038.01.T01:intron 45.0%
GGTCGTTAATGTTGGCAAGA+AGG - Chr7:57161067-57161086 MsG0780039038.01.T01:CDS 45.0%
TAAACGAAAGGTGGGAAGGA+AGG - Chr7:57162032-57162051 MsG0780039038.01.T01:CDS 45.0%
TATGCAACACTGCTCCTAAG+GGG + Chr7:57160692-57160711 None:intergenic 45.0%
TCTACACTCACAAACCTGCA+AGG - Chr7:57159935-57159954 MsG0780039038.01.T01:intron 45.0%
TTCATGTACATGGCAGGAAG+TGG - Chr7:57162117-57162136 MsG0780039038.01.T01:CDS 45.0%
! AGGTACTATTGCAAGCATCG+TGG - Chr7:57159830-57159849 MsG0780039038.01.T01:intron 45.0%
! GGTTGTCAAGGCAGATTTTG+AGG + Chr7:57161234-57161253 None:intergenic 45.0%
! TCTGTTTGCTGAGGCAGATA+AGG - Chr7:57159767-57159786 MsG0780039038.01.T01:intron 45.0%
!! ACCTATGTACTGGTTGAGAC+CGG + Chr7:57161255-57161274 None:intergenic 45.0%
!! CATTGACTCCAAGCTTCTGA+AGG + Chr7:57160259-57160278 None:intergenic 45.0%
!! CCTAAATCCCCTATTTCTGG+AGG - Chr7:57160921-57160940 MsG0780039038.01.T01:CDS 45.0%
!!! CTACTTTTGGCTTCTTCAGG+GGG + Chr7:57162182-57162201 None:intergenic 45.0%
ACCGGTCTCAACCAGTACAT+AGG - Chr7:57161251-57161270 MsG0780039038.01.T01:CDS 50.0%
GAAGGTCCCCCTAAATGATG+TGG - Chr7:57161037-57161056 MsG0780039038.01.T01:CDS 50.0%
TGCATACCGCATTCTCACAG+AGG + Chr7:57160052-57160071 None:intergenic 50.0%
! TAAGCGCCCGATGGGTTTAT+AGG + Chr7:57159975-57159994 None:intergenic 50.0%
CTGGTTGAGACCGGTTGTCA+AGG + Chr7:57161246-57161265 None:intergenic 55.0%
TCCTGCAATAAGCGCCCGAT+GGG + Chr7:57159983-57160002 None:intergenic 55.0%
TTCCTGCAATAAGCGCCCGA+TGG + Chr7:57159984-57160003 None:intergenic 55.0%
ACCCATCGGGCGCTTATTGC+AGG - Chr7:57159979-57159998 MsG0780039038.01.T01:intron 60.0%
Chromosome Type Strat End Strand Name
Chr7 gene 57159690 57162209 57159690 ID=MsG0780039038.01;Name=MsG0780039038.01
Chr7 mRNA 57159690 57162209 57159690 ID=MsG0780039038.01.T01;Parent=MsG0780039038.01;Name=MsG0780039038.01.T01;_AED=0.50;_eAED=0.50;_QI=0|0|0|1|1|1|4|0|477
Chr7 exon 57161568 57162209 57161568 ID=MsG0780039038.01.T01:exon:8259;Parent=MsG0780039038.01.T01
Chr7 exon 57160808 57161452 57160808 ID=MsG0780039038.01.T01:exon:8258;Parent=MsG0780039038.01.T01
Chr7 exon 57160627 57160696 57160627 ID=MsG0780039038.01.T01:exon:8257;Parent=MsG0780039038.01.T01
Chr7 exon 57159690 57159766 57159690 ID=MsG0780039038.01.T01:exon:8256;Parent=MsG0780039038.01.T01
Chr7 CDS 57161568 57162209 57161568 ID=MsG0780039038.01.T01:cds;Parent=MsG0780039038.01.T01
Chr7 CDS 57160808 57161452 57160808 ID=MsG0780039038.01.T01:cds;Parent=MsG0780039038.01.T01
Chr7 CDS 57160627 57160696 57160627 ID=MsG0780039038.01.T01:cds;Parent=MsG0780039038.01.T01
Chr7 CDS 57159690 57159766 57159690 ID=MsG0780039038.01.T01:cds;Parent=MsG0780039038.01.T01
Gene Sequence

>MsG0780039038.01.T01

ATGACTGGAAATGCCTCAGCTGTACAAGTTGACAAAGTAACCCTAAGAGTTTTGGTGGACAAGAAGAAAAACAAAGTTCTGTTTGCTGAGGCAGATAAGGATTTTGTTGATGTTCTTTTGAGCTTTTTAACATTGCCCTTAGGTACTATTGCAAGCATCGTGGCTAAAGAGTCAAATATTGAAGCAGTGAGATTTGGCAGCATTAGTTCACTCTATCAAAGTGTGTCAGTTCTTGATCAACGATATCTACACTCACAAACCTGCAAGGAGATGCTACTCAATCCTATAAACCCATCGGGCGCTTATTGCAGGAATATGAAACTGAACATTGACAATACTGAGCCCTTGAAGTCATTCTACCTCTGTGAGAATGCGGTATGCAAAATTGAAAATAGGTACTGTTTGAGTTACTATAGGAATCAAAAATGTATTTGTGGAAAGCTGTTGAACCGAGAAAAAATCCTGATTTTGAGTAAGGAAATCGGTTTTGTTAATGAAACGTCGACGTTTATTGTATCTGATGATCTTTATGTTATGCCAAATGTTGTTACGACAAGTTTAAATCTCCTTCAGAAGCTTGGAGTCAATGACATTGATGCTATTGATAAACAAACCGTTAATATCAACATCACCAAGAAAGAGGTAGTTGATCTTCTCAAATTGTCTTTGGTCTCAAAAACTCCTCTGTCCGAATTTATATTTAAAAAGCAACAATCTGTTGAAATTTTTGTTCCAAGTAACCAAATGGAGGTTAATATTGGTAAAGAAAAGGAACAGTCTGATGAAATGGTTGTGAGAGTACTGAGAAGAAAATCAAATGAACAGATTTTGTTTGTTGAAGCAGATGATGATTTTGCTGATTTCGTTTTTAGTTTTCTCACTTTCCCCTTAGGAGCAGTGTTGCATATTCTCCAAGGATTCTCTTTTGTAAGCTGCATTGATAATTTGTATAAGAGTGTGACTGAATTGAGTTCAGACAAGTGTTTGAGGTCACAACTTATGAAAGATAGACTAACGATTCCAATGATTTCTATTCAATCTGAACTCAGGAGCCAGAGATTACCGATACCTAAACACAATTATAATGAAAAAAGTATGCTACATAAATTTGTTGATCCTAAATCCCCTATTTCTGGAGGATATGCTAGAGCACCATTAAAGATTATGGTGACAGACGACTTGGTTGTGACTCCAATGTCATCCATTGATGGTATTTTATATCTTGAAAGAATGAAGGTCCCCCTAAATGATGTGGAAGAAATGGTCGTTAATGTTGGCAAGAAGGAGGGTCTCAGCATACTTAGAGCTTCATTGACCTCAAAATCTGCCTTGACAACCGGTCTCAACCAGTACATAGGAAGTGGAAGTAGATCTGTTCAGGCTAATTTGTCATCAAATGCTAGCCCCCTGAAGAAGCCAAAAGTAGAAAAATGA
Protein sequence

>MsG0780039038.01.T01

MTGNASAVQVDKVTLRVLVDKKKNKVLFAEADKDFVDVLLSFLTLPLGTIASIVAKESNIEAVRFGSISSLYQSVSVLDQRYLHSQTCKEMLLNPINPSGAYCRNMKLNIDNTEPLKSFYLCENAVCKIENRYCLSYYRNQKCICGKLLNREKILILSKEIGFVNETSTFIVSDDLYVMPNVVTTSLNLLQKLGVNDIDAIDKQTVNINITKKEVVDLLKLSLVSKTPLSEFIFKKQQSVEIFVPSNQMEVNIGKEKEQSDEMVVRVLRRKSNEQILFVEADDDFADFVFSFLTFPLGAVLHILQGFSFVSCIDNLYKSVTELSSDKCLRSQLMKDRLTIPMISIQSELRSQRLPIPKHNYNEKSMLHKFVDPKSPISGGYARAPLKIMVTDDLVVTPMSSIDGILYLERMKVPLNDVEEMVVNVGKKEGLSILRASLTSKSALTTGLNQYIGSGSRSVQANLSSNASPLKKPKVEK*