Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780039039.01.T01 | XP_013449059.1 | 62.955 | 467 | 164 | 4 | 1 | 467 | 21 | 478 | 0 | 582 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780039039.01.T01 | A0A072U0X6 | 62.955 | 467 | 164 | 4 | 1 | 467 | 21 | 478 | 0.0 | 582 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780039039.01.T01 | MTR_7g066260 | 62.955 | 467 | 164 | 4 | 1 | 467 | 21 | 478 | 0.0 | 582 |
| MsG0780039039.01.T01 | MTR_7g066360 | 57.569 | 469 | 174 | 10 | 1 | 467 | 20 | 465 | 4.93e-161 | 464 |
| MsG0780039039.01.T01 | MTR_7g066290 | 53.982 | 452 | 170 | 3 | 1 | 452 | 21 | 434 | 9.39e-157 | 452 |
| MsG0780039039.01.T01 | MTR_7g066570 | 54.149 | 482 | 169 | 11 | 1 | 451 | 20 | 480 | 2.21e-156 | 456 |
| MsG0780039039.01.T01 | MTR_7g066340 | 51.288 | 466 | 206 | 7 | 1 | 463 | 18 | 465 | 1.26e-148 | 432 |
| MsG0780039039.01.T01 | MTR_7g012680 | 53.030 | 462 | 170 | 11 | 1 | 451 | 20 | 445 | 3.00e-147 | 428 |
| MsG0780039039.01.T01 | MTR_7g066350 | 53.747 | 467 | 189 | 11 | 1 | 462 | 15 | 459 | 4.23e-144 | 420 |
| MsG0780039039.01.T01 | MTR_1g041315 | 51.670 | 449 | 186 | 8 | 1 | 435 | 20 | 451 | 4.93e-141 | 414 |
| MsG0780039039.01.T01 | MTR_7g066400 | 48.000 | 475 | 184 | 12 | 1 | 459 | 18 | 445 | 1.76e-133 | 393 |
| MsG0780039039.01.T01 | MTR_7g058710 | 48.347 | 484 | 193 | 11 | 1 | 451 | 18 | 477 | 3.66e-133 | 393 |
| MsG0780039039.01.T01 | MTR_7g066580 | 44.807 | 491 | 189 | 12 | 1 | 453 | 1 | 447 | 8.83e-122 | 363 |
| MsG0780039039.01.T01 | MTR_7g066310 | 44.731 | 465 | 173 | 9 | 1 | 463 | 13 | 395 | 3.96e-119 | 355 |
| MsG0780039039.01.T01 | MTR_7g058700 | 46.608 | 457 | 166 | 9 | 7 | 451 | 531 | 921 | 8.18e-115 | 359 |
| MsG0780039039.01.T01 | MTR_7g066410 | 41.153 | 503 | 242 | 10 | 2 | 454 | 17 | 515 | 1.37e-108 | 332 |
| MsG0780039039.01.T01 | MTR_7g066410 | 28.509 | 228 | 144 | 6 | 1 | 220 | 290 | 506 | 3.59e-12 | 68.9 |
| MsG0780039039.01.T01 | MTR_7g066430 | 39.558 | 498 | 232 | 10 | 1 | 451 | 10 | 485 | 7.70e-104 | 319 |
| MsG0780039039.01.T01 | MTR_7g066480 | 41.176 | 459 | 205 | 12 | 1 | 452 | 22 | 422 | 2.95e-94 | 291 |
| MsG0780039039.01.T01 | MTR_2g029400 | 40.725 | 469 | 165 | 10 | 2 | 441 | 21 | 405 | 5.79e-94 | 290 |
| MsG0780039039.01.T01 | MTR_7g063660 | 38.574 | 477 | 239 | 12 | 1 | 447 | 15 | 467 | 3.66e-90 | 283 |
| MsG0780039039.01.T01 | MTR_7g066280 | 41.096 | 438 | 166 | 10 | 74 | 459 | 1 | 398 | 7.12e-90 | 280 |
| MsG0780039039.01.T01 | MTR_7g062300 | 39.112 | 473 | 241 | 11 | 1 | 447 | 18 | 469 | 3.88e-89 | 280 |
| MsG0780039039.01.T01 | MTR_7g062280 | 37.805 | 492 | 247 | 12 | 1 | 453 | 16 | 487 | 1.73e-87 | 276 |
| MsG0780039039.01.T01 | MTR_7g066490 | 40.481 | 457 | 197 | 14 | 1 | 452 | 22 | 408 | 2.46e-86 | 271 |
| MsG0780039039.01.T01 | MTR_7g063900 | 39.836 | 487 | 231 | 14 | 1 | 448 | 16 | 479 | 9.82e-85 | 269 |
| MsG0780039039.01.T01 | MTR_7g063880 | 38.382 | 482 | 234 | 14 | 1 | 453 | 17 | 464 | 2.79e-84 | 267 |
| MsG0780039039.01.T01 | MTR_7g063830 | 37.744 | 461 | 243 | 14 | 1 | 453 | 16 | 440 | 4.83e-83 | 263 |
| MsG0780039039.01.T01 | MTR_7g063890 | 39.506 | 486 | 233 | 11 | 1 | 448 | 33 | 495 | 1.24e-81 | 261 |
| MsG0780039039.01.T01 | MTR_7g063820 | 39.095 | 486 | 230 | 15 | 1 | 447 | 16 | 474 | 2.17e-81 | 260 |
| MsG0780039039.01.T01 | MTR_7g063920 | 36.421 | 475 | 221 | 8 | 1 | 453 | 17 | 432 | 4.12e-80 | 255 |
| MsG0780039039.01.T01 | MTR_7g063840 | 37.083 | 480 | 249 | 12 | 1 | 453 | 16 | 469 | 6.91e-80 | 256 |
| MsG0780039039.01.T01 | MTR_4g019310 | 35.800 | 500 | 241 | 16 | 1 | 447 | 14 | 486 | 4.13e-77 | 249 |
| MsG0780039039.01.T01 | MTR_3g065200 | 37.288 | 472 | 190 | 12 | 1 | 438 | 9 | 408 | 1.83e-76 | 246 |
| MsG0780039039.01.T01 | MTR_7g063670 | 37.281 | 456 | 250 | 9 | 1 | 448 | 21 | 448 | 3.09e-75 | 243 |
| MsG0780039039.01.T01 | MTR_3g007740 | 38.280 | 465 | 230 | 14 | 1 | 448 | 15 | 439 | 9.82e-73 | 236 |
| MsG0780039039.01.T01 | MTR_1g014060 | 53.953 | 215 | 91 | 4 | 4 | 218 | 9 | 215 | 1.22e-68 | 224 |
| MsG0780039039.01.T01 | MTR_1g014060 | 50.286 | 175 | 77 | 2 | 287 | 451 | 210 | 384 | 4.10e-42 | 154 |
| MsG0780039039.01.T01 | MTR_4g019340 | 34.711 | 484 | 245 | 15 | 1 | 439 | 44 | 501 | 2.02e-68 | 227 |
| MsG0780039039.01.T01 | MTR_4g017830 | 33.015 | 524 | 266 | 18 | 1 | 465 | 18 | 515 | 8.36e-66 | 221 |
| MsG0780039039.01.T01 | MTR_4g017440 | 33.333 | 501 | 258 | 16 | 1 | 447 | 20 | 498 | 1.37e-61 | 209 |
| MsG0780039039.01.T01 | MTR_4g017410 | 34.086 | 487 | 262 | 18 | 1 | 448 | 15 | 481 | 4.20e-58 | 199 |
| MsG0780039039.01.T01 | MTR_4g017610 | 31.919 | 495 | 249 | 19 | 2 | 447 | 20 | 475 | 2.01e-57 | 197 |
| MsG0780039039.01.T01 | MTR_7g066680 | 40.391 | 307 | 116 | 5 | 203 | 449 | 37 | 336 | 3.24e-56 | 190 |
| MsG0780039039.01.T01 | MTR_4g017550 | 31.417 | 487 | 240 | 17 | 22 | 448 | 18 | 470 | 2.00e-49 | 176 |
| MsG0780039039.01.T01 | MTR_4g017470 | 29.666 | 509 | 238 | 10 | 1 | 448 | 18 | 467 | 3.86e-47 | 170 |
| MsG0780039039.01.T01 | MTR_4g017470 | 28.458 | 253 | 132 | 11 | 4 | 227 | 243 | 475 | 2.03e-12 | 69.3 |
| MsG0780039039.01.T01 | MTR_7g066390 | 50.617 | 162 | 48 | 2 | 298 | 459 | 1 | 130 | 3.88e-43 | 149 |
| MsG0780039039.01.T01 | MTR_7g063720 | 41.294 | 201 | 107 | 2 | 263 | 453 | 29 | 228 | 5.31e-40 | 144 |
| MsG0780039039.01.T01 | MTR_7g063720 | 29.412 | 221 | 126 | 9 | 1 | 220 | 29 | 220 | 2.69e-11 | 63.9 |
| MsG0780039039.01.T01 | MTR_7g062270 | 44.970 | 169 | 85 | 4 | 1 | 167 | 16 | 178 | 2.39e-35 | 135 |
| MsG0780039039.01.T01 | MTR_2g067310 | 43.750 | 176 | 56 | 2 | 6 | 181 | 58 | 190 | 6.76e-34 | 128 |
| MsG0780039039.01.T01 | MTR_7g100420 | 32.219 | 329 | 171 | 7 | 150 | 451 | 94 | 397 | 1.44e-26 | 111 |
| MsG0780039039.01.T01 | MTR_8g023240 | 26.518 | 494 | 287 | 18 | 7 | 464 | 49 | 502 | 1.59e-26 | 113 |
| MsG0780039039.01.T01 | MTR_7g063850 | 31.507 | 219 | 116 | 6 | 263 | 453 | 72 | 284 | 1.30e-21 | 95.1 |
| MsG0780039039.01.T01 | MTR_8g445860 | 29.907 | 214 | 117 | 5 | 263 | 444 | 19 | 231 | 1.17e-18 | 85.5 |
| MsG0780039039.01.T01 | MTR_8g445860 | 29.237 | 236 | 141 | 7 | 1 | 226 | 19 | 238 | 2.32e-18 | 84.7 |
| MsG0780039039.01.T01 | MTR_1g115440 | 30.126 | 239 | 134 | 8 | 1 | 224 | 17 | 237 | 1.44e-17 | 82.4 |
| MsG0780039039.01.T01 | MTR_1g115440 | 26.577 | 222 | 119 | 5 | 263 | 445 | 17 | 233 | 3.56e-14 | 72.4 |
| MsG0780039039.01.T01 | MTR_0150s0010 | 28.870 | 239 | 123 | 6 | 8 | 224 | 23 | 236 | 5.47e-16 | 77.8 |
| MsG0780039039.01.T01 | MTR_4g019240 | 38.889 | 108 | 52 | 5 | 2 | 99 | 20 | 123 | 3.67e-13 | 68.2 |
| MsG0780039039.01.T01 | MTR_7g063760 | 51.613 | 62 | 29 | 1 | 388 | 448 | 3 | 64 | 4.06e-13 | 64.7 |
| MsG0780039039.01.T01 | MTR_7g063690 | 32.738 | 168 | 93 | 6 | 118 | 284 | 74 | 222 | 1.76e-12 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780039039.01.T01 | AT5G01120 | 29.630 | 486 | 288 | 13 | 1 | 447 | 15 | 485 | 1.99e-49 | 176 |
| MsG0780039039.01.T01 | AT3G09140 | 29.644 | 506 | 278 | 16 | 1 | 453 | 15 | 495 | 1.00e-48 | 174 |
| MsG0780039039.01.T01 | AT3G09140 | 28.922 | 529 | 280 | 17 | 1 | 453 | 15 | 523 | 5.11e-46 | 167 |
| MsG0780039039.01.T01 | AT5G43240 | 28.800 | 500 | 278 | 14 | 1 | 447 | 15 | 489 | 5.45e-46 | 167 |
| MsG0780039039.01.T01 | AT5G43240 | 28.800 | 500 | 278 | 14 | 1 | 447 | 15 | 489 | 5.45e-46 | 167 |
| MsG0780039039.01.T01 | AT5G43240 | 28.800 | 500 | 278 | 14 | 1 | 447 | 15 | 489 | 5.45e-46 | 167 |
| MsG0780039039.01.T01 | AT3G09110 | 32.622 | 328 | 195 | 8 | 1 | 322 | 15 | 322 | 3.79e-45 | 161 |
| MsG0780039039.01.T01 | AT5G01150 | 28.953 | 487 | 292 | 11 | 1 | 453 | 15 | 481 | 4.07e-44 | 162 |
| MsG0780039039.01.T01 | AT5G01130 | 30.022 | 463 | 279 | 11 | 1 | 451 | 15 | 444 | 3.06e-43 | 159 |
| MsG0780039039.01.T01 | AT5G37320 | 29.387 | 473 | 292 | 14 | 3 | 447 | 17 | 475 | 1.29e-39 | 149 |
| MsG0780039039.01.T01 | AT5G01140 | 27.824 | 478 | 277 | 12 | 1 | 451 | 15 | 451 | 2.39e-38 | 145 |
| MsG0780039039.01.T01 | AT3G09120 | 30.818 | 318 | 191 | 8 | 1 | 308 | 12 | 310 | 1.61e-32 | 126 |
Find 72 sgRNAs with CRISPR-Local
Find 99 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGTTCCTAATTTCAAATTT+AGG | 0.166999 | 7:+57184763 | None:intergenic |
| AAAAGGGCCATTTACTATTA+TGG | 0.187413 | 7:-57184638 | MsG0780039039.01.T01:CDS |
| GATCCTAAATGCTCTATTTC+TGG | 0.207929 | 7:-57184670 | MsG0780039039.01.T01:CDS |
| ATTTGATGTTGTTTCGTATC+TGG | 0.213082 | 7:-57184581 | MsG0780039039.01.T01:CDS |
| AATATTGAAGCAATGAAATT+TGG | 0.259168 | 7:-57185809 | MsG0780039039.01.T01:CDS |
| TAACCTTCCATTGAGTTTCT+TGG | 0.263133 | 7:+57185701 | None:intergenic |
| AAGAGGAGTCTTTGATATTA+AGG | 0.278988 | 7:+57185228 | None:intergenic |
| CCGTTCCAATTGGTAATATC+TGG | 0.311055 | 7:+57184743 | None:intergenic |
| GAGGAAATGGTCATTAATAT+TGG | 0.313311 | 7:-57184529 | MsG0780039039.01.T01:CDS |
| GTCAACAGAAGTAAATTTAC+TGG | 0.331715 | 7:+57185517 | None:intergenic |
| CCTCCAGAAATAGAGCATTT+AGG | 0.342932 | 7:+57184667 | None:intergenic |
| CGTGTGATTCCTAATGATCT+TGG | 0.353093 | 7:-57185446 | MsG0780039039.01.T01:CDS |
| AGACTTGTTCCAAGATCATT+AGG | 0.354050 | 7:+57185437 | None:intergenic |
| GGAGTGCTGCAAATGCTTAA+AGG | 0.355586 | 7:-57184901 | MsG0780039039.01.T01:CDS |
| TTCAAACCCGTCACCATTGC+AGG | 0.369323 | 7:-57185167 | MsG0780039039.01.T01:CDS |
| TTTGTTTCATCTTTAACATA+AGG | 0.374164 | 7:+57185200 | None:intergenic |
| TGTTGACAATGGCTTTGTTA+AGG | 0.376852 | 7:-57185501 | MsG0780039039.01.T01:CDS |
| AATTCTCACACACAAAATAC+TGG | 0.399727 | 7:+57185639 | None:intergenic |
| CTATGTTTGCTTCAGATGAA+TGG | 0.402964 | 7:-57185416 | MsG0780039039.01.T01:CDS |
| TCTGTAACCATAATAGTAAA+TGG | 0.404329 | 7:+57184631 | None:intergenic |
| CCTTACTGATGTGGAGGAAA+TGG | 0.419958 | 7:-57184542 | MsG0780039039.01.T01:CDS |
| GGTCATTAATATTGGCTTGA+AGG | 0.428523 | 7:-57184521 | MsG0780039039.01.T01:CDS |
| GAGCTCACTGTATCAAAGTA+TGG | 0.430051 | 7:-57185780 | MsG0780039039.01.T01:CDS |
| CTTTGCTTACTTGCGAATCA+AGG | 0.437852 | 7:-57184720 | MsG0780039039.01.T01:CDS |
| ATTTCTGGAGGATTTGCAAA+AGG | 0.441668 | 7:-57184655 | MsG0780039039.01.T01:CDS |
| ATTTGCAGCACTCCTCCAAT+AGG | 0.443991 | 7:+57184910 | None:intergenic |
| GATTCCTAAAAGTGCTCAAA+TGG | 0.457402 | 7:+57185585 | None:intergenic |
| GTAAGCAAAGCCGTTCCAAT+TGG | 0.459975 | 7:+57184733 | None:intergenic |
| CCATTTCCTCCACATCAGTA+AGG | 0.480656 | 7:+57184542 | None:intergenic |
| TTAGAGAAGAATCAAATGCT+TGG | 0.481817 | 7:-57185088 | MsG0780039039.01.T01:intron |
| GCTTCAGATGAATGGAATCA+AGG | 0.482857 | 7:-57185408 | MsG0780039039.01.T01:CDS |
| AAAGAGTATACCATCTGATA+AGG | 0.487445 | 7:-57185134 | MsG0780039039.01.T01:CDS |
| CGAATCAAGGAATGAACACT+TGG | 0.493810 | 7:-57184707 | MsG0780039039.01.T01:CDS |
| AGCTTCTTAACGTTACCTCT+AGG | 0.495191 | 7:-57185863 | MsG0780039039.01.T01:CDS |
| TGTTAAAGATGAAACAAATC+CGG | 0.497512 | 7:-57185195 | MsG0780039039.01.T01:CDS |
| TTTCTGGAGGATTTGCAAAA+GGG | 0.501903 | 7:-57184654 | MsG0780039039.01.T01:CDS |
| GCTTCTTAACGTTACCTCTA+GGG | 0.504646 | 7:-57185862 | MsG0780039039.01.T01:CDS |
| AGGAACCAGATATTACCAAT+TGG | 0.504839 | 7:-57184748 | MsG0780039039.01.T01:CDS |
| TGAGTCCAGAGAGATGTATA+AGG | 0.510669 | 7:-57184828 | MsG0780039039.01.T01:CDS |
| TCGTGACCTGCAATGGTGAC+GGG | 0.510995 | 7:+57185161 | None:intergenic |
| TTCGTATCTGGAGAAAATGA+AGG | 0.514088 | 7:-57184569 | MsG0780039039.01.T01:CDS |
| TTTAACATAAGGTCTGTAAG+AGG | 0.519053 | 7:+57185211 | None:intergenic |
| CGTGACCTTATACATCTCTC+TGG | 0.519450 | 7:+57184823 | None:intergenic |
| TCAACATCTGCTTTGACTAA+CGG | 0.522198 | 7:-57184371 | MsG0780039039.01.T01:CDS |
| ACTCAAGCCAAGAAACTCAA+TGG | 0.529420 | 7:-57185708 | MsG0780039039.01.T01:CDS |
| CATTCATAAGCTTTCCGCAA+TGG | 0.530860 | 7:+57185555 | None:intergenic |
| GTGACGGGTTTGAAACATAC+CGG | 0.544489 | 7:+57185176 | None:intergenic |
| CATTTCCTCCACATCAGTAA+GGG | 0.549856 | 7:+57184543 | None:intergenic |
| GGAAAGCTTATGAATGTAGC+AGG | 0.557241 | 7:-57185548 | MsG0780039039.01.T01:CDS |
| CAGAGAGATGTATAAGGTCA+CGG | 0.568140 | 7:-57184822 | MsG0780039039.01.T01:CDS |
| TCACACACAAAATACTGGAC+AGG | 0.568420 | 7:+57185644 | None:intergenic |
| ACAACATCAAATGATGACAT+TGG | 0.572177 | 7:+57184592 | None:intergenic |
| AAATTTACTTCTGTTGACAA+TGG | 0.574585 | 7:-57185512 | MsG0780039039.01.T01:CDS |
| AGAGAGATGTATAAGGTCAC+GGG | 0.577744 | 7:-57184821 | MsG0780039039.01.T01:CDS |
| ATCGTGACCTGCAATGGTGA+CGG | 0.578158 | 7:+57185160 | None:intergenic |
| AAGTTATGGTTCACAAAGAG+AGG | 0.583978 | 7:-57185937 | None:intergenic |
| TTTGCAATCGTGACCTGCAA+TGG | 0.585862 | 7:+57185154 | None:intergenic |
| GAAGGTTCCCCTTACTGATG+TGG | 0.592231 | 7:-57184551 | MsG0780039039.01.T01:CDS |
| CCTAAATGCTCTATTTCTGG+AGG | 0.595730 | 7:-57184667 | MsG0780039039.01.T01:CDS |
| AAGCCAAGAAACTCAATGGA+AGG | 0.599168 | 7:-57185704 | MsG0780039039.01.T01:CDS |
| TCAACAGAAGTAAATTTACT+GGG | 0.601488 | 7:+57185518 | None:intergenic |
| CCAGATATTACCAATTGGAA+CGG | 0.602731 | 7:-57184743 | MsG0780039039.01.T01:CDS |
| AACGGCCTCAAAACGTACAT+AGG | 0.606207 | 7:-57184353 | MsG0780039039.01.T01:CDS |
| TACCTCTAGGGACTACTGCA+AGG | 0.606719 | 7:-57185850 | MsG0780039039.01.T01:CDS |
| AGCATAATAGCCTTATCAGA+TGG | 0.611403 | 7:+57185124 | None:intergenic |
| CATTAATATTGGCTTGAAGG+AGG | 0.613962 | 7:-57184518 | MsG0780039039.01.T01:intron |
| GGTTCCCCTTACTGATGTGG+AGG | 0.625034 | 7:-57184548 | MsG0780039039.01.T01:CDS |
| GAATCACACGAAGATCGTCA+TGG | 0.634980 | 7:+57185459 | None:intergenic |
| AGGAATCAGAAATGCCATTG+CGG | 0.648325 | 7:-57185569 | MsG0780039039.01.T01:CDS |
| ATTTCCTCCACATCAGTAAG+GGG | 0.653913 | 7:+57184544 | None:intergenic |
| AGCCTTGCAGTAGTCCCTAG+AGG | 0.697539 | 7:+57185848 | None:intergenic |
| ATTGTTGTCGATATACAACA+AGG | 0.735950 | 7:-57185610 | MsG0780039039.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTCTATATATTAATGTTT+TGG | - | Chr7:57184919-57184938 | MsG0780039039.01.T01:CDS | 10.0% |
| !! | TTCAAATTTAGGAAAAATTT+GGG | + | Chr7:57185462-57185481 | None:intergenic | 15.0% |
| !! | TTTCAAATTTAGGAAAAATT+TGG | + | Chr7:57185463-57185482 | None:intergenic | 15.0% |
| !!! | GATTGTATAATTTGTATATA+TGG | - | Chr7:57185804-57185823 | MsG0780039039.01.T01:CDS | 15.0% |
| !!! | TTTTTCCTAAATTTGAAATT+AGG | - | Chr7:57185465-57185484 | MsG0780039039.01.T01:CDS | 15.0% |
| !! | AATATTGAAGCAATGAAATT+TGG | - | Chr7:57184424-57184443 | MsG0780039039.01.T01:intron | 20.0% |
| !! | TCAAATTTAGGAAAAATTTG+GGG | + | Chr7:57185461-57185480 | None:intergenic | 20.0% |
| !! | TTCTTGATGAAAAATATCTA+TGG | - | Chr7:57184479-57184498 | MsG0780039039.01.T01:intron | 20.0% |
| !! | TTTGTTTCATCTTTAACATA+AGG | + | Chr7:57185036-57185055 | None:intergenic | 20.0% |
| ! | AAATTTACTTCTGTTGACAA+TGG | - | Chr7:57184721-57184740 | MsG0780039039.01.T01:CDS | 25.0% |
| ! | TCAACAGAAGTAAATTTACT+GGG | + | Chr7:57184718-57184737 | None:intergenic | 25.0% |
| ! | TCTGTAACCATAATAGTAAA+TGG | + | Chr7:57185605-57185624 | None:intergenic | 25.0% |
| ! | TGGTTCCTAATTTCAAATTT+AGG | + | Chr7:57185473-57185492 | None:intergenic | 25.0% |
| ! | TGTTAAAGATGAAACAAATC+CGG | - | Chr7:57185038-57185057 | MsG0780039039.01.T01:intron | 25.0% |
| !! | ATAATTTGTATATATGGTGC+AGG | - | Chr7:57185810-57185829 | MsG0780039039.01.T01:CDS | 25.0% |
| !! | TAATTTGTATATATGGTGCA+GGG | - | Chr7:57185811-57185830 | MsG0780039039.01.T01:CDS | 25.0% |
| AAAAGGGCCATTTACTATTA+TGG | - | Chr7:57185595-57185614 | MsG0780039039.01.T01:CDS | 30.0% | |
| AAGAGGAGTCTTTGATATTA+AGG | + | Chr7:57185008-57185027 | None:intergenic | 30.0% | |
| AATTCTCACACACAAAATAC+TGG | + | Chr7:57184597-57184616 | None:intergenic | 30.0% | |
| ACAACATCAAATGATGACAT+TGG | + | Chr7:57185644-57185663 | None:intergenic | 30.0% | |
| ATTGTTGTCGATATACAACA+AGG | - | Chr7:57184623-57184642 | MsG0780039039.01.T01:CDS | 30.0% | |
| ATTTAAACCCAACAGAGAAT+AGG | - | Chr7:57185170-57185189 | MsG0780039039.01.T01:CDS | 30.0% | |
| GAGGAAATGGTCATTAATAT+TGG | - | Chr7:57185704-57185723 | MsG0780039039.01.T01:CDS | 30.0% | |
| GTCAACAGAAGTAAATTTAC+TGG | + | Chr7:57184719-57184738 | None:intergenic | 30.0% | |
| TTAGAGAAGAATCAAATGCT+TGG | - | Chr7:57185145-57185164 | MsG0780039039.01.T01:CDS | 30.0% | |
| TTTAACATAAGGTCTGTAAG+AGG | + | Chr7:57185025-57185044 | None:intergenic | 30.0% | |
| ! | AAAGAGTATACCATCTGATA+AGG | - | Chr7:57185099-57185118 | MsG0780039039.01.T01:CDS | 30.0% |
| ! | AGTATTTTGTGTGTGAGAAT+TGG | - | Chr7:57184596-57184615 | MsG0780039039.01.T01:CDS | 30.0% |
| ! | ATTTTCATGTTTATATGCGC+AGG | - | Chr7:57184961-57184980 | MsG0780039039.01.T01:CDS | 30.0% |
| !! | AGTTTTCTCACTTTTCCTAT+TGG | - | Chr7:57185308-57185327 | MsG0780039039.01.T01:intron | 30.0% |
| !! | ATTTGATGTTGTTTCGTATC+TGG | - | Chr7:57185652-57185671 | MsG0780039039.01.T01:CDS | 30.0% |
| !!! | GTGTATTTTGGTCAAATTAC+TGG | - | Chr7:57185219-57185238 | MsG0780039039.01.T01:CDS | 30.0% |
| ACCAAAATACACTCTTCAGA+TGG | + | Chr7:57185211-57185230 | None:intergenic | 35.0% | |
| ACTACTTATCAGTCAGAAAG+AGG | - | Chr7:57184873-57184892 | MsG0780039039.01.T01:CDS | 35.0% | |
| AGGAACCAGATATTACCAAT+TGG | - | Chr7:57185485-57185504 | MsG0780039039.01.T01:CDS | 35.0% | |
| CCAGATATTACCAATTGGAA+CGG | - | Chr7:57185490-57185509 | MsG0780039039.01.T01:CDS | 35.0% | |
| CTATGTTTGCTTCAGATGAA+TGG | - | Chr7:57184817-57184836 | MsG0780039039.01.T01:CDS | 35.0% | |
| GATCCTAAATGCTCTATTTC+TGG | - | Chr7:57185563-57185582 | MsG0780039039.01.T01:CDS | 35.0% | |
| TAACCTTCCATTGAGTTTCT+TGG | + | Chr7:57184535-57184554 | None:intergenic | 35.0% | |
| TCAACATCTGCTTTGACTAA+CGG | - | Chr7:57185862-57185881 | MsG0780039039.01.T01:CDS | 35.0% | |
| TTCCAATCCTATTCTCTGTT+GGG | + | Chr7:57185180-57185199 | None:intergenic | 35.0% | |
| TTCGTATCTGGAGAAAATGA+AGG | - | Chr7:57185664-57185683 | MsG0780039039.01.T01:CDS | 35.0% | |
| TTTCCAATCCTATTCTCTGT+TGG | + | Chr7:57185181-57185200 | None:intergenic | 35.0% | |
| ! | AGACTTGTTCCAAGATCATT+AGG | + | Chr7:57184799-57184818 | None:intergenic | 35.0% |
| ! | ATTTCTGGAGGATTTGCAAA+AGG | - | Chr7:57185578-57185597 | MsG0780039039.01.T01:CDS | 35.0% |
| ! | TGTTTTTCTCTCGATATCTG+CGG | + | Chr7:57184854-57184873 | None:intergenic | 35.0% |
| ! | TTTCTGGAGGATTTGCAAAA+GGG | - | Chr7:57185579-57185598 | MsG0780039039.01.T01:CDS | 35.0% |
| ! | TTTTGTGTGTGAGAATTGGA+AGG | - | Chr7:57184600-57184619 | MsG0780039039.01.T01:CDS | 35.0% |
| !! | ACCATCTGAAGAGTGTATTT+TGG | - | Chr7:57185207-57185226 | MsG0780039039.01.T01:CDS | 35.0% |
| !! | AGCATAATAGCCTTATCAGA+TGG | + | Chr7:57185112-57185131 | None:intergenic | 35.0% |
| !! | CATTAATATTGGCTTGAAGG+AGG | - | Chr7:57185715-57185734 | MsG0780039039.01.T01:CDS | 35.0% |
| !! | GAACAAAGTTTTGTATGCTG+AGG | - | Chr7:57184318-57184337 | MsG0780039039.01.T01:CDS | 35.0% |
| !! | GATTCCTAAAAGTGCTCAAA+TGG | + | Chr7:57184651-57184670 | None:intergenic | 35.0% |
| !! | GGTCATTAATATTGGCTTGA+AGG | - | Chr7:57185712-57185731 | MsG0780039039.01.T01:CDS | 35.0% |
| !! | TGTTGACAATGGCTTTGTTA+AGG | - | Chr7:57184732-57184751 | MsG0780039039.01.T01:CDS | 35.0% |
| !! | TTTCTCACTTTTCCTATTGG+AGG | - | Chr7:57185311-57185330 | MsG0780039039.01.T01:intron | 35.0% |
| AACCCAACAGAGAATAGGAT+TGG | - | Chr7:57185175-57185194 | MsG0780039039.01.T01:CDS | 40.0% | |
| AAGCCAAGAAACTCAATGGA+AGG | - | Chr7:57184529-57184548 | MsG0780039039.01.T01:CDS | 40.0% | |
| ACTCAAGCCAAGAAACTCAA+TGG | - | Chr7:57184525-57184544 | MsG0780039039.01.T01:CDS | 40.0% | |
| AGAGAGATGTATAAGGTCAC+GGG | - | Chr7:57185412-57185431 | MsG0780039039.01.T01:CDS | 40.0% | |
| AGCTTCTTAACGTTACCTCT+AGG | - | Chr7:57184370-57184389 | MsG0780039039.01.T01:CDS | 40.0% | |
| AGGAATCAGAAATGCCATTG+CGG | - | Chr7:57184664-57184683 | MsG0780039039.01.T01:CDS | 40.0% | |
| ATTTCCTCCACATCAGTAAG+GGG | + | Chr7:57185692-57185711 | None:intergenic | 40.0% | |
| CAGAGAGATGTATAAGGTCA+CGG | - | Chr7:57185411-57185430 | MsG0780039039.01.T01:CDS | 40.0% | |
| CATTCATAAGCTTTCCGCAA+TGG | + | Chr7:57184681-57184700 | None:intergenic | 40.0% | |
| CATTTCCTCCACATCAGTAA+GGG | + | Chr7:57185693-57185712 | None:intergenic | 40.0% | |
| CGAATCAAGGAATGAACACT+TGG | - | Chr7:57185526-57185545 | MsG0780039039.01.T01:CDS | 40.0% | |
| CGTGTGATTCCTAATGATCT+TGG | - | Chr7:57184787-57184806 | MsG0780039039.01.T01:CDS | 40.0% | |
| CTTTGCTTACTTGCGAATCA+AGG | - | Chr7:57185513-57185532 | MsG0780039039.01.T01:CDS | 40.0% | |
| GAGCTCACTGTATCAAAGTA+TGG | - | Chr7:57184453-57184472 | MsG0780039039.01.T01:intron | 40.0% | |
| GCTTCAGATGAATGGAATCA+AGG | - | Chr7:57184825-57184844 | MsG0780039039.01.T01:CDS | 40.0% | |
| GCTTCTTAACGTTACCTCTA+GGG | - | Chr7:57184371-57184390 | MsG0780039039.01.T01:CDS | 40.0% | |
| GGAAAGCTTATGAATGTAGC+AGG | - | Chr7:57184685-57184704 | MsG0780039039.01.T01:CDS | 40.0% | |
| TCACACACAAAATACTGGAC+AGG | + | Chr7:57184592-57184611 | None:intergenic | 40.0% | |
| TGAGTCCAGAGAGATGTATA+AGG | - | Chr7:57185405-57185424 | MsG0780039039.01.T01:CDS | 40.0% | |
| ! | ACTCACCTATGTACGTTTTG+AGG | + | Chr7:57185888-57185907 | None:intergenic | 40.0% |
| ! | CCGTTCCAATTGGTAATATC+TGG | + | Chr7:57185493-57185512 | None:intergenic | 40.0% |
| ! | CCTCCAGAAATAGAGCATTT+AGG | + | Chr7:57185569-57185588 | None:intergenic | 40.0% |
| !! | AAAGTTTTGTATGCTGAGGC+TGG | - | Chr7:57184322-57184341 | MsG0780039039.01.T01:CDS | 40.0% |
| !! | CCTAAATGCTCTATTTCTGG+AGG | - | Chr7:57185566-57185585 | MsG0780039039.01.T01:CDS | 40.0% |
| !! | TATTGGCTTGAAGGAGGTAA+AGG | - | Chr7:57185721-57185740 | MsG0780039039.01.T01:CDS | 40.0% |
| AACGGCCTCAAAACGTACAT+AGG | - | Chr7:57185880-57185899 | MsG0780039039.01.T01:CDS | 45.0% | |
| ATTTGCAGCACTCCTCCAAT+AGG | + | Chr7:57185326-57185345 | None:intergenic | 45.0% | |
| CCATTTCCTCCACATCAGTA+AGG | + | Chr7:57185694-57185713 | None:intergenic | 45.0% | |
| CCTTACTGATGTGGAGGAAA+TGG | - | Chr7:57185691-57185710 | MsG0780039039.01.T01:CDS | 45.0% | |
| CGTGACCTTATACATCTCTC+TGG | + | Chr7:57185413-57185432 | None:intergenic | 45.0% | |
| GAATCACACGAAGATCGTCA+TGG | + | Chr7:57184777-57184796 | None:intergenic | 45.0% | |
| GTAAGCAAAGCCGTTCCAAT+TGG | + | Chr7:57185503-57185522 | None:intergenic | 45.0% | |
| TTTGCAATCGTGACCTGCAA+TGG | + | Chr7:57185082-57185101 | None:intergenic | 45.0% | |
| !! | GGAGTGCTGCAAATGCTTAA+AGG | - | Chr7:57185332-57185351 | MsG0780039039.01.T01:intron | 45.0% |
| !! | GTGACGGGTTTGAAACATAC+CGG | + | Chr7:57185060-57185079 | None:intergenic | 45.0% |
| ATCGTGACCTGCAATGGTGA+CGG | + | Chr7:57185076-57185095 | None:intergenic | 50.0% | |
| GAAGGTTCCCCTTACTGATG+TGG | - | Chr7:57185682-57185701 | MsG0780039039.01.T01:CDS | 50.0% | |
| TTCAAACCCGTCACCATTGC+AGG | - | Chr7:57185066-57185085 | MsG0780039039.01.T01:intron | 50.0% | |
| ! | GGCGCCATTTGAGCACTTTT+AGG | - | Chr7:57184644-57184663 | MsG0780039039.01.T01:CDS | 50.0% |
| ! | TACCTCTAGGGACTACTGCA+AGG | - | Chr7:57184383-57184402 | MsG0780039039.01.T01:CDS | 50.0% |
| AGCCTTGCAGTAGTCCCTAG+AGG | + | Chr7:57184388-57184407 | None:intergenic | 55.0% | |
| GGTTCCCCTTACTGATGTGG+AGG | - | Chr7:57185685-57185704 | MsG0780039039.01.T01:CDS | 55.0% | |
| TCGTGACCTGCAATGGTGAC+GGG | + | Chr7:57185075-57185094 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr7 | gene | 57184301 | 57185954 | 57184301 | ID=MsG0780039039.01;Name=MsG0780039039.01 |
| Chr7 | mRNA | 57184301 | 57185954 | 57184301 | ID=MsG0780039039.01.T01;Parent=MsG0780039039.01;Name=MsG0780039039.01.T01;_AED=0.50;_eAED=0.50;_QI=0|0|0|1|1|0.75|4|0|468 |
| Chr7 | exon | 57185372 | 57185954 | 57185372 | ID=MsG0780039039.01.T01:exon:8266;Parent=MsG0780039039.01.T01 |
| Chr7 | exon | 57185089 | 57185298 | 57185089 | ID=MsG0780039039.01.T01:exon:8265;Parent=MsG0780039039.01.T01 |
| Chr7 | exon | 57184519 | 57185009 | 57184519 | ID=MsG0780039039.01.T01:exon:8264;Parent=MsG0780039039.01.T01 |
| Chr7 | exon | 57184301 | 57184423 | 57184301 | ID=MsG0780039039.01.T01:exon:8263;Parent=MsG0780039039.01.T01 |
| Chr7 | CDS | 57185372 | 57185954 | 57185372 | ID=MsG0780039039.01.T01:cds;Parent=MsG0780039039.01.T01 |
| Chr7 | CDS | 57185089 | 57185298 | 57185089 | ID=MsG0780039039.01.T01:cds;Parent=MsG0780039039.01.T01 |
| Chr7 | CDS | 57184519 | 57185009 | 57184519 | ID=MsG0780039039.01.T01:cds;Parent=MsG0780039039.01.T01 |
| Chr7 | CDS | 57184301 | 57184423 | 57184301 | ID=MsG0780039039.01.T01:cds;Parent=MsG0780039039.01.T01 |
| Gene Sequence |
| Protein sequence |
