Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0358230 | XP_003602082.1 | 96.026 | 755 | 30 | 0 | 1 | 755 | 1 | 755 | 0.0 | 1494 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0358230 | sp|Q8LFN2|Y3037_ARATH | 39.698 | 728 | 406 | 13 | 43 | 752 | 43 | 755 | 7.37e-160 | 486 |
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0000220 | Msa0358230 | 0.810039 | 1.405244e-50 | -8.615850e-47 |
Msa0003470 | Msa0358230 | 0.827412 | 1.587034e-54 | -8.615850e-47 |
Msa0003490 | Msa0358230 | 0.813347 | 2.680508e-51 | -8.615850e-47 |
Msa0004350 | Msa0358230 | 0.820278 | 7.465113e-53 | -8.615850e-47 |
Msa0006870 | Msa0358230 | 0.806753 | 7.057561e-50 | -8.615850e-47 |
Msa0007230 | Msa0358230 | 0.802305 | 5.974268e-49 | -8.615850e-47 |
Msa0007450 | Msa0358230 | 0.815147 | 1.073062e-51 | -8.615850e-47 |
Msa0009210 | Msa0358230 | 0.815932 | 7.173475e-52 | -8.615850e-47 |
Msa0010460 | Msa0358230 | -0.821553 | 3.797829e-53 | -8.615850e-47 |
Msa0012460 | Msa0358230 | 0.836241 | 1.050425e-56 | -8.615850e-47 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0358230 | MtrunA17_Chr3g0116231 | 96.026 | 755 | 30 | 0 | 1 | 755 | 1 | 755 | 0.0 | 1494 |
Msa0358230 | MtrunA17_Chr7g0226051 | 54.388 | 752 | 328 | 8 | 13 | 752 | 10 | 758 | 0.0 | 779 |
Msa0358230 | MtrunA17_Chr6g0459201 | 51.962 | 739 | 342 | 6 | 25 | 755 | 30 | 763 | 0.0 | 731 |
Msa0358230 | MtrunA17_Chr7g0253951 | 39.840 | 748 | 413 | 11 | 25 | 753 | 20 | 749 | 8.29e-172 | 513 |
Msa0358230 | MtrunA17_Chr6g0460961 | 37.120 | 757 | 445 | 10 | 16 | 753 | 16 | 760 | 3.34e-166 | 499 |
Msa0358230 | MtrunA17_Chr8g0362301 | 34.760 | 771 | 413 | 16 | 6 | 754 | 8 | 710 | 7.27e-132 | 408 |
Msa0358230 | MtrunA17_Chr1g0203631 | 29.393 | 643 | 396 | 15 | 131 | 741 | 645 | 1261 | 6.51e-67 | 241 |
Msa0358230 | MtrunA17_Chr1g0203631 | 29.478 | 268 | 183 | 3 | 131 | 393 | 346 | 612 | 4.91e-23 | 105 |
Msa0358230 | MtrunA17_Chr1g0203631 | 32.593 | 270 | 152 | 6 | 106 | 369 | 222 | 467 | 2.27e-22 | 103 |
Msa0358230 | MtrunA17_Chr1g0203631 | 31.765 | 255 | 158 | 3 | 131 | 369 | 489 | 743 | 3.55e-22 | 102 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0358230 | AT5G14210.1 | 51.579 | 760 | 353 | 8 | 7 | 753 | 6 | 763 | 0.0 | 722 |
Msa0358230 | AT5G14210.2 | 49.937 | 791 | 350 | 9 | 7 | 753 | 6 | 794 | 0.0 | 714 |
Msa0358230 | AT5G14210.3 | 50.714 | 700 | 330 | 8 | 7 | 693 | 6 | 703 | 0.0 | 647 |
Msa0358230 | AT5G63410.1 | 47.938 | 582 | 260 | 12 | 207 | 755 | 104 | 675 | 2.68e-161 | 483 |
Msa0358230 | AT5G63410.1 | 52.364 | 275 | 124 | 5 | 1 | 270 | 1 | 273 | 5.08e-72 | 248 |
Msa0358230 | AT3G03770.2 | 39.698 | 728 | 406 | 13 | 43 | 752 | 43 | 755 | 7.50e-161 | 486 |
Msa0358230 | AT3G03770.3 | 39.698 | 728 | 406 | 13 | 43 | 752 | 43 | 755 | 7.50e-161 | 486 |
Msa0358230 | AT3G03770.1 | 39.698 | 728 | 406 | 13 | 43 | 752 | 43 | 755 | 7.50e-161 | 486 |
Msa0358230 | AT1G14390.1 | 34.948 | 764 | 384 | 19 | 24 | 752 | 27 | 712 | 2.00e-113 | 360 |
Msa0358230 | AT2G02780.1 | 32.078 | 770 | 409 | 19 | 24 | 752 | 27 | 723 | 8.48e-98 | 319 |
Find 154 sgRNAs with CRISPR-Local
Find 288 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AAAGCAGCAATAATGAAGAT+TGG | 0.483399 | 3_1:-43008667 | None:intergenic |
AAAGCTCCGCCACACGCATT+TGG | 0.426793 | 3_1:+43011391 | Msa0358230:CDS |
AAATTCAAGTAAATAATGTT+CGG | 0.497638 | 3_1:-43010330 | None:intergenic |
AACATTATTTACTTGAATTT+GGG | 0.295143 | 3_1:+43010333 | Msa0358230:CDS |
AACGAATATGATCGACACGA+TGG | 0.666855 | 3_1:-43011066 | None:intergenic |
AAGAAACAAAACCATGAATT+AGG | 0.171210 | 3_1:-43012235 | None:intergenic |
AAGAAGAAATCGAACCGAGT+TGG | 0.538528 | 3_1:+43010567 | Msa0358230:CDS |
AAGCATACTGTAAGTTCCAA+AGG | 0.587863 | 3_1:-43012939 | None:intergenic |
AAGTCCAGAACAACAGCTGA+TGG | 0.520296 | 3_1:+43012965 | Msa0358230:CDS |
AAGTGTTCCACTCAGCATGT+TGG | 0.585414 | 3_1:-43010358 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
GTAATGTTCTTACCTTACTT+TGG | - | chr3_1:43008537-43008556 | None:intergenic | 30.0% | |
AAAGCAGCAATAATGAAGAT+TGG | - | chr3_1:43008670-43008689 | None:intergenic | 30.0% | |
GCAGTAAATGCATTAAATTC+AGG | + | chr3_1:43008714-43008733 | Msa0358230:five_prime_UTR | 30.0% | |
AATCCAAGACATAAAAAGTG+GGG | - | chr3_1:43008744-43008763 | None:intergenic | 30.0% | |
GAATCCAAGACATAAAAAGT+GGG | - | chr3_1:43008745-43008764 | None:intergenic | 30.0% | |
AGAATCCAAGACATAAAAAG+TGG | - | chr3_1:43008746-43008765 | None:intergenic | 30.0% | |
AACAAAAGAAAGATCAAGTG+TGG | - | chr3_1:43008783-43008802 | None:intergenic | 30.0% | |
ATAGCCAACAATATTGATCT+TGG | + | chr3_1:43008845-43008864 | Msa0358230:intron | 30.0% | |
ACAACCAAGATCAATATTGT+TGG | - | chr3_1:43008852-43008871 | None:intergenic | 30.0% | |
AAATCTATTAAGAAAGGCTG+AGG | + | chr3_1:43009147-43009166 | Msa0358230:intron | 30.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3_1 | gene | 43008304 | 43013298 | 43008304 | ID=Msa0358230;Name=Msa0358230 |
chr3_1 | mRNA | 43008304 | 43013298 | 43008304 | ID=Msa0358230-mRNA-1;Parent=Msa0358230;Name=Msa0358230-mRNA-1;_AED=0.14;_eAED=0.14;_QI=410|1|1|1|0.75|0.66|9|314|755 |
chr3_1 | exon | 43008304 | 43008543 | 43008304 | ID=Msa0358230-mRNA-1:exon:7529;Parent=Msa0358230-mRNA-1 |
chr3_1 | exon | 43008645 | 43008735 | 43008645 | ID=Msa0358230-mRNA-1:exon:7530;Parent=Msa0358230-mRNA-1 |
chr3_1 | exon | 43009339 | 43010765 | 43009339 | ID=Msa0358230-mRNA-1:exon:7531;Parent=Msa0358230-mRNA-1 |
chr3_1 | exon | 43011025 | 43011158 | 43011025 | ID=Msa0358230-mRNA-1:exon:7532;Parent=Msa0358230-mRNA-1 |
chr3_1 | exon | 43011284 | 43011524 | 43011284 | ID=Msa0358230-mRNA-1:exon:7533;Parent=Msa0358230-mRNA-1 |
chr3_1 | exon | 43011721 | 43011932 | 43011721 | ID=Msa0358230-mRNA-1:exon:7534;Parent=Msa0358230-mRNA-1 |
chr3_1 | exon | 43012220 | 43012245 | 43012220 | ID=Msa0358230-mRNA-1:exon:7535;Parent=Msa0358230-mRNA-1 |
chr3_1 | exon | 43012389 | 43012500 | 43012389 | ID=Msa0358230-mRNA-1:exon:7536;Parent=Msa0358230-mRNA-1 |
chr3_1 | exon | 43012790 | 43013298 | 43012790 | ID=Msa0358230-mRNA-1:exon:7537;Parent=Msa0358230-mRNA-1 |
chr3_1 | five_prime_UTR | 43008304 | 43008543 | 43008304 | ID=Msa0358230-mRNA-1:five_prime_utr;Parent=Msa0358230-mRNA-1 |
chr3_1 | five_prime_UTR | 43008645 | 43008735 | 43008645 | ID=Msa0358230-mRNA-1:five_prime_utr;Parent=Msa0358230-mRNA-1 |
chr3_1 | five_prime_UTR | 43009339 | 43009417 | 43009339 | ID=Msa0358230-mRNA-1:five_prime_utr;Parent=Msa0358230-mRNA-1 |
chr3_1 | CDS | 43009418 | 43010765 | 43009418 | ID=Msa0358230-mRNA-1:cds;Parent=Msa0358230-mRNA-1 |
chr3_1 | CDS | 43011025 | 43011158 | 43011025 | ID=Msa0358230-mRNA-1:cds;Parent=Msa0358230-mRNA-1 |
chr3_1 | CDS | 43011284 | 43011524 | 43011284 | ID=Msa0358230-mRNA-1:cds;Parent=Msa0358230-mRNA-1 |
chr3_1 | CDS | 43011721 | 43011932 | 43011721 | ID=Msa0358230-mRNA-1:cds;Parent=Msa0358230-mRNA-1 |
chr3_1 | CDS | 43012220 | 43012245 | 43012220 | ID=Msa0358230-mRNA-1:cds;Parent=Msa0358230-mRNA-1 |
chr3_1 | CDS | 43012389 | 43012500 | 43012389 | ID=Msa0358230-mRNA-1:cds;Parent=Msa0358230-mRNA-1 |
chr3_1 | CDS | 43012790 | 43012984 | 43012790 | ID=Msa0358230-mRNA-1:cds;Parent=Msa0358230-mRNA-1 |
chr3_1 | three_prime_UTR | 43012985 | 43013298 | 43012985 | ID=Msa0358230-mRNA-1:three_prime_utr;Parent=Msa0358230-mRNA-1 |
Gene Sequence |
>Msa0358230 ATGGGGTTTTATGACTTGGTTTTGCTATTCTGTTATGTTTGGTATGTTTTTTATGTGGGAAGTTGCATTGCTCAGTTACAATCCTCTCAGATACAAGTTCTTCTCCAGTTGCAAAAACACTTAGAATATCCAACACAGTTAGAAATATGGAAAGATCGTAGGACAGAACTTTGCTTTGTCCCTTCAACACAAGTCAAAATCACATGCAAGGACAATTTTGTCACAGAGCTTACTATCTTTGGTGATAAGCCAAACAAGGGTAGAGATTTTGATGGTTTTGCTATTCCAAATCAAACACTATCACAAAGCTTCTCAATGGATTCATTTGTTGCAACTCTTGCAAGGTTAACTAGCTTGAGAGTTCTTCATCTTGTTTCTTTGGGAATTTGGGGACCACTTCCTGATAGAATTCATAGATTATTTTCACTTGAAACTTTGGATTTGAGTTCAAATTATCTTTATGGATCAATCCCTCCAAAAATTTCTACTATGGTCAGCCTTCAAACTCTTATGTTAGGTGATAACTTCTTCAATGGTACTATCCCAAACTTGTTTGATTCATCAAGTAATCTCACAGTTCTTAGTTTGAAGAACGATAAGTTGAAGGGTCCATTTCCATTTTCAATCCTTAGTATCACAACTTTGACTAACATTGACATGTCAAGAAATCAGATATCCGGAAGCTTACAAGATTTTACTGGTTTGAGTAGTTTGGAACACTTAGATTTAAGAGAAAATGAATTAGATTCTGATTTACCTGCATTGCCTAAAGGGTTGATATCGCTATTCCTCAACCGGAATTCCTTCTCAGGTCAAATTCCAAAAGACTATGGTGAACTAAATAGTCTTCAGCACCTTGATATTTCCTTCAATGCACTCACAGGAGCTACTCCTTCTGAACTTTTTTCTTTGCCGAACATTATTTACTTGAATTTGGGATCCAACATGCTGAGTGGAACACTTCAAAATCATCTTAGATGTGGCCACAATCTTAGTTTTGTTGACATATCAAATAATAGGCTAATTGGAGCCTTGCCTTATTCTCTGAGCAATGTGTCAGAAAATAGAGTTGTGGAGAGTGATGGAAACTGTTTATCTGGTAGTTTGCAGCATCAGCATGCAGTATCTTATTGCACAGAAGCTCCTGATAAGAAGAAATCGAACCGAGTTGGAATTTTTGTTGCTGTCATTGTTGGAATTCTTGTTATCATTGTTGGTTTTGGTTTATGCATCATTGTTATATGTAAGAGGTATTACTCTAGAGGGATTGCAGAGCAGCACCTATTGCATAAATCAGTTCAAGATAGCTACTCGGCAGGGTTCTCATCTGAGCTTATTGCAAATGCAAGATATGTTTCTGAAGCTGCAAAGTTAGGCAAAGAAGACCTTCCATCGTGTCGATCATATTCGTTGGAGGAGCTTATGGAAGCAACAAATAACTTTGACAATTCTACTTTTCTTGGTGAAAATATATATGGGAAGCTTTACAAAGGAAAATTGGAGAGTGGGATAGCTGTTGTAATAAGGTGCATACCTTTATCAAAAAAGTACTCAGTTCGAAATTTCAAACTGAGGCTGGATTTGCTTGCAAAGCTCCGCCACACGCATTTGGTATCCCTCTTGGGACACTGCATTGATGGTATTTTAGGAGAGCGTAACGACTCAAAGGTCTTTCTCGTTTATGAATGTGTATCAAATGGGAATTTCCAATCTTATCTCTCAGGAGATAGTTGTGGCAAGATTTTCAATTGGTCAGAGAGATTGTCAGTTTTAATTAGTGTTGCTAAGGCTATTCACTTCTTACACACTGGAATGATACCTGGTTTCTTCAGAAATAGACTTAAGACCAACAATATTTTGTTTAATGAAAATTGGATGGCAAAGTTGAGTGACTATGGATTGTCCATTGTCTCTGAAGAAACTGATGCAAGTGGGGTAATAGGAGAAAGCCCTAATTCATGGCAAATGAAAAAGCTAGAGGATGATATTTATAGCTTTGGATTCATAATACTTGAGGCACTTGTTGGACCATCCATGTTTGCTAAAAGAGAAGCAGCTGTGCTAAATGCAATGGCTTCCTTCAGTAGTCAAGATGAGTGGAAACAAATAGTGGATCCAGTTGTGCAAGCTACTTGCTGCAAAGAATCTCTATCTATTGTGATTTCTATAACTAACAAGTGTATATCTACCGAGTCGTGGAGTCGACCATCGATTGAGGATGTCCTTTGGAACTTACAGTATGCTTCTCAAGTCCAGAACAACAGCTGA |
Protein sequence |
>Msa0358230 MGFYDLVLLFCYVWYVFYVGSCIAQLQSSQIQVLLQLQKHLEYPTQLEIWKDRRTELCFVPSTQVKITCKDNFVTELTIFGDKPNKGRDFDGFAIPNQTLSQSFSMDSFVATLARLTSLRVLHLVSLGIWGPLPDRIHRLFSLETLDLSSNYLYGSIPPKISTMVSLQTLMLGDNFFNGTIPNLFDSSSNLTVLSLKNDKLKGPFPFSILSITTLTNIDMSRNQISGSLQDFTGLSSLEHLDLRENELDSDLPALPKGLISLFLNRNSFSGQIPKDYGELNSLQHLDISFNALTGATPSELFSLPNIIYLNLGSNMLSGTLQNHLRCGHNLSFVDISNNRLIGALPYSLSNVSENRVVESDGNCLSGSLQHQHAVSYCTEAPDKKKSNRVGIFVAVIVGILVIIVGFGLCIIVICKRYYSRGIAEQHLLHKSVQDSYSAGFSSELIANARYVSEAAKLGKEDLPSCRSYSLEELMEATNNFDNSTFLGENIYGKLYKGKLESGIAVVIRCIPLSKKYSVRNFKLRLDLLAKLRHTHLVSLLGHCIDGILGERNDSKVFLVYECVSNGNFQSYLSGDSCGKIFNWSERLSVLISVAKAIHFLHTGMIPGFFRNRLKTNNILFNENWMAKLSDYGLSIVSEETDASGVIGESPNSWQMKKLEDDIYSFGFIILEALVGPSMFAKREAAVLNAMASFSSQDEWKQIVDPVVQATCCKESLSIVISITNKCISTESWSRPSIEDVLWNLQYASQVQNNS* |