Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001540 | Msa0025660 | 0.813166 | 2.937573e-51 | -8.615850e-47 |
| Msa0025660 | Msa0073220 | 0.870999 | 9.544245e-67 | -8.615850e-47 |
| Msa0025660 | Msa0094700 | 0.818078 | 2.365290e-52 | -8.615850e-47 |
| Msa0025660 | Msa0121420 | 0.872039 | 4.318616e-67 | -8.615850e-47 |
| Msa0025660 | Msa0166060 | 0.882815 | 7.591143e-71 | -8.615850e-47 |
| Msa0025660 | Msa0179200 | 0.810019 | 1.418865e-50 | -8.615850e-47 |
| Msa0025660 | Msa0214730 | 0.801361 | 9.338188e-49 | -8.615850e-47 |
| Msa0025660 | Msa0236350 | 0.800962 | 1.126802e-48 | -8.615850e-47 |
| Msa0025660 | Msa0258410 | 0.802067 | 6.687709e-49 | -8.615850e-47 |
| Msa0025660 | Msa0273550 | 0.820275 | 7.475918e-53 | -8.615850e-47 |
| Msa0025660 | Msa0274870 | 0.820384 | 7.055626e-53 | -8.615850e-47 |
| Msa0025660 | Msa0335740 | 0.811338 | 7.359273e-51 | -8.615850e-47 |
| Msa0025660 | Msa0371050 | 0.801008 | 1.102573e-48 | -8.615850e-47 |
| Msa0025660 | Msa0380360 | 0.806067 | 9.846085e-50 | -8.615850e-47 |
| Msa0025660 | Msa0380440 | 0.810439 | 1.152139e-50 | -8.615850e-47 |
| Msa0025660 | Msa0383570 | 0.802271 | 6.071567e-49 | -8.615850e-47 |
| Msa0025660 | Msa0423820 | 0.811496 | 6.802157e-51 | -8.615850e-47 |
| Msa0025660 | Msa0438990 | 0.800841 | 1.192959e-48 | -8.615850e-47 |
| Msa0025660 | Msa0624700 | 0.802008 | 6.877753e-49 | -8.615850e-47 |
| Msa0025660 | Msa0779790 | 0.803232 | 3.845794e-49 | -8.615850e-47 |
| Msa0025660 | Msa0880060 | 0.811899 | 5.558763e-51 | -8.615850e-47 |
| Msa0025660 | Msa1011240 | 0.834879 | 2.322228e-56 | -8.615850e-47 |
| Msa0025660 | Msa1121290 | 0.802698 | 4.957947e-49 | -8.615850e-47 |
| Msa0025660 | Msa1177960 | 0.835621 | 1.508693e-56 | -8.615850e-47 |
| Msa0025660 | Msa1237750 | 0.806133 | 9.535546e-50 | -8.615850e-47 |
| Msa0025660 | Msa1318180 | 0.818829 | 1.598136e-52 | -8.615850e-47 |
| Msa0025660 | Msa1375600 | 0.834149 | 3.540765e-56 | -8.615850e-47 |
| Msa0025660 | Msa1376560 | 0.800859 | 1.182409e-48 | -8.615850e-47 |
| Msa0025660 | Msa1376590 | 0.816460 | 5.466597e-52 | -8.615850e-47 |
| Msa0025660 | Msa1388610 | 0.800544 | 1.371062e-48 | -8.615850e-47 |
| Msa0025660 | Msa1418600 | 0.802844 | 4.625307e-49 | -8.615850e-47 |
| Msa0025660 | Msa1455120 | 0.822703 | 2.055708e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0025660 | MtrunA17_Chr1g0180501 | 93.697 | 238 | 12 | 3 | 1 | 235 | 1 | 238 | 4.83e-149 | 414 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0025660 | AT2G36885.1 | 86.957 | 161 | 21 | 0 | 74 | 234 | 95 | 255 | 1.51e-98 | 288 |
| Msa0025660 | AT2G36885.2 | 86.957 | 161 | 20 | 1 | 74 | 234 | 95 | 254 | 4.36e-97 | 284 |
Find 83 sgRNAs with CRISPR-Local
Find 157 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGTGGTTATGGTACCTATC+TGG | 0.201420 | 1_1:-49018089 | Msa0025660:CDS |
| TACCTTTACAAGTTATTAAA+TGG | 0.226253 | 1_1:-49016259 | Msa0025660:three_prime_UTR |
| CATGCTGTTACAGGCGTTAT+TGG | 0.241825 | 1_1:-49017413 | Msa0025660:CDS |
| GCCTGACTGGCTTGTACATT+GGG | 0.244545 | 1_1:-49018256 | Msa0025660:CDS |
| CTGCGCCAAGAGAGGAAATT+TGG | 0.284374 | 1_1:+49018546 | None:intergenic |
| TTCTTTGCTCTTGGAGCTAC+TGG | 0.300779 | 1_1:-49017619 | Msa0025660:CDS |
| CGCGAATTATGAAATGAAAT+TGG | 0.301103 | 1_1:+49018569 | None:intergenic |
| TGGTGTTGATTCTATGGATT+GGG | 0.307901 | 1_1:+49018478 | None:intergenic |
| TACAGTCCTCATGCTGTTAC+AGG | 0.316629 | 1_1:-49017422 | Msa0025660:intron |
| GCTGCCCTTGGACTTCAATT+AGG | 0.329493 | 1_1:-49016685 | Msa0025660:CDS |
| GGGATGCAAGTCCTTGGCCT+TGG | 0.338833 | 1_1:+49017666 | None:intergenic |
| GATAGTCCTTTGATAAATTA+CGG | 0.361878 | 1_1:+49016365 | None:intergenic |
| CCATTCATTATTCTACGAAA+TGG | 0.368463 | 1_1:-49018639 | Msa0025660:exon |
| TCGCGCCAAATTTCCTCTCT+TGG | 0.371911 | 1_1:-49018551 | Msa0025660:CDS |
| TCTGTATCTAGTTGCGTTCA+CGG | 0.380800 | 1_1:+49016284 | None:intergenic |
| TATATTACCTTCACTGTTTG+AGG | 0.381332 | 1_1:-49017366 | Msa0025660:intron |
| TGGACGGAGATTCATGATAA+TGG | 0.384959 | 1_1:+49018598 | None:intergenic |
| TTTCTTGTCCATGCTGCCCT+TGG | 0.385296 | 1_1:-49016697 | Msa0025660:CDS |
| TAAATATTTGTAGGAGGAAA+AGG | 0.386374 | 1_1:-49017689 | Msa0025660:intron |
| TGCCTGACTGGCTTGTACAT+TGG | 0.392543 | 1_1:-49018257 | Msa0025660:CDS |
| TTGGTGTTGATTCTATGGAT+TGG | 0.404513 | 1_1:+49018477 | None:intergenic |
| CTATGGATTGGGGTGAGTCT+TGG | 0.408490 | 1_1:+49018489 | None:intergenic |
| CCATGAACATTTCTTAATCC+AGG | 0.412779 | 1_1:+49016748 | None:intergenic |
| AAGAAATGTTCATGGCATCT+TGG | 0.414269 | 1_1:-49016740 | Msa0025660:CDS |
| GGTGGTTATGGTACCTATCT+GGG | 0.422512 | 1_1:-49018088 | Msa0025660:CDS |
| AATGACATGCAGGGAAATCC+TGG | 0.428057 | 1_1:-49016766 | Msa0025660:intron |
| CCCCAATGTACAAGCCAGTC+AGG | 0.431799 | 1_1:+49018255 | None:intergenic |
| TGCCATTTAATAACTTGTAA+AGG | 0.433931 | 1_1:+49016257 | None:intergenic |
| AAATTACGGATAATTCTCAT+TGG | 0.438433 | 1_1:+49016379 | None:intergenic |
| ATTTAACTAACCATGTTGGC+AGG | 0.445888 | 1_1:+49018228 | None:intergenic |
| TTGGGGTGAGTCTTGGTTTG+TGG | 0.447264 | 1_1:+49018496 | None:intergenic |
| TGAAATGAAATTGGTGAAGA+TGG | 0.457610 | 1_1:+49018578 | None:intergenic |
| AGAAATGTTCATGGCATCTT+GGG | 0.463806 | 1_1:-49016739 | Msa0025660:CDS |
| AACATACCAGCTAATAGCTT+GGG | 0.466091 | 1_1:+49017646 | None:intergenic |
| GAAGCTGTATTTATGAACTA+AGG | 0.469918 | 1_1:+49016662 | None:intergenic |
| TCGAATGCGAAAACCCAGAT+AGG | 0.472079 | 1_1:+49018075 | None:intergenic |
| CCTGGATTAAGAAATGTTCA+TGG | 0.473102 | 1_1:-49016748 | Msa0025660:CDS |
| CCATTTCGTAGAATAATGAA+TGG | 0.475222 | 1_1:+49018639 | None:intergenic |
| TACGCCGCTGCTCTCTTACC+TGG | 0.482775 | 1_1:-49018410 | Msa0025660:CDS |
| AATTACGGATAATTCTCATT+GGG | 0.484475 | 1_1:+49016380 | None:intergenic |
| AGTCGTTGAATCTGCCTGAC+TGG | 0.497666 | 1_1:-49018269 | Msa0025660:CDS |
| TGTGACATATATGCATTGTA+AGG | 0.509944 | 1_1:+49016154 | None:intergenic |
| AAACATACCAGCTAATAGCT+TGG | 0.513187 | 1_1:+49017645 | None:intergenic |
| TGGCGTGACATTTGAGGTGG+AGG | 0.520546 | 1_1:+49018516 | None:intergenic |
| TAGCTTGGGATGCAAGTCCT+TGG | 0.521656 | 1_1:+49017660 | None:intergenic |
| CTATTGTTGTGACTTTGTGA+TGG | 0.524251 | 1_1:+49018706 | None:intergenic |
| ACTACAATTGCTGGTTGACT+TGG | 0.525375 | 1_1:-49016442 | Msa0025660:three_prime_UTR |
| TTGCATCCCAAGCTATTAGC+TGG | 0.539795 | 1_1:-49017652 | Msa0025660:CDS |
| GGTTTGTGGCGTGACATTTG+AGG | 0.543470 | 1_1:+49018510 | None:intergenic |
| AAGATCAAGATGAGAGTGGA+AGG | 0.544984 | 1_1:+49018762 | None:intergenic |
| GTTGAAACCACGTGTAAAAG+TGG | 0.555349 | 1_1:-49018825 | Msa0025660:five_prime_UTR |
| TAAGGCCTAATTGAAGTCCA+AGG | 0.569878 | 1_1:+49016680 | None:intergenic |
| AATTATCCGTAATTTATCAA+AGG | 0.577881 | 1_1:-49016371 | Msa0025660:three_prime_UTR |
| GCGAGTTGCTGCGCCAAGAG+AGG | 0.579896 | 1_1:+49018538 | None:intergenic |
| GGAGGAAAAGGCCAAGGCCA+AGG | 0.580312 | 1_1:-49017677 | Msa0025660:CDS |
| ATTTATTTAACTAACCATGT+TGG | 0.587938 | 1_1:+49018224 | None:intergenic |
| TTGGGGTCACCCTGCCAACA+TGG | 0.588484 | 1_1:-49018238 | Msa0025660:intron |
| GGTGTTGATTCTATGGATTG+GGG | 0.590362 | 1_1:+49018479 | None:intergenic |
| AAATACAGCTTCAATTGATG+AGG | 0.597989 | 1_1:-49016651 | Msa0025660:intron |
| TAGCTGGTGTACCACATCAT+CGG | 0.598201 | 1_1:+49018048 | None:intergenic |
| ATAACTTTAATTATATAGTG+TGG | 0.598763 | 1_1:-49016186 | Msa0025660:three_prime_UTR |
| TTGTGGCGTGACATTTGAGG+TGG | 0.601719 | 1_1:+49018513 | None:intergenic |
| TTTAACTAACCATGTTGGCA+GGG | 0.602404 | 1_1:+49018229 | None:intergenic |
| ATTGAAGTCCAAGGGCAGCA+TGG | 0.606273 | 1_1:+49016689 | None:intergenic |
| ACCATTACCTCAAACAGTGA+AGG | 0.611894 | 1_1:+49017359 | None:intergenic |
| GACTTGACTATCTCAACGAA+AGG | 0.613541 | 1_1:+49018288 | None:intergenic |
| TAGTAAGATCAAGATGAGAG+TGG | 0.614576 | 1_1:+49018758 | None:intergenic |
| TTTGCTCTTGGAGCTACTGG+CGG | 0.615713 | 1_1:-49017616 | Msa0025660:CDS |
| TCTGTATTGTCAACAAAGCA+AGG | 0.616586 | 1_1:+49017390 | None:intergenic |
| TTTGTAGGAGGAAAAGGCCA+AGG | 0.623008 | 1_1:-49017683 | Msa0025660:intron |
| AAGGCCTAATTGAAGTCCAA+GGG | 0.629303 | 1_1:+49016681 | None:intergenic |
| ATGAAATTGGTGAAGATGGA+CGG | 0.635618 | 1_1:+49018582 | None:intergenic |
| CATTCGATATTCCGATGATG+TGG | 0.635671 | 1_1:-49018059 | Msa0025660:intron |
| AGATCAAGATGAGAGTGGAA+GGG | 0.640373 | 1_1:+49018763 | None:intergenic |
| GCGGCGTAAAGTAAAGACAA+TGG | 0.650565 | 1_1:+49018425 | None:intergenic |
| ATAACGCCTGTAACAGCATG+AGG | 0.651874 | 1_1:+49017416 | None:intergenic |
| CAGGTAAACACTAATCTGAG+TGG | 0.661519 | 1_1:+49016115 | None:intergenic |
| AAGATGAGAGTGGAAGGGCG+AGG | 0.662994 | 1_1:+49018768 | None:intergenic |
| CCTGACTGGCTTGTACATTG+GGG | 0.664667 | 1_1:-49018255 | Msa0025660:CDS |
| GAAACCACGTGTAAAAGTGG+AGG | 0.678749 | 1_1:-49018822 | Msa0025660:five_prime_UTR |
| GCCGCTGCTCTCTTACCTGG+AGG | 0.685113 | 1_1:-49018407 | Msa0025660:intron |
| ACCTCCAGGTAAGAGAGCAG+CGG | 0.686187 | 1_1:+49018406 | None:intergenic |
| ACGGAGATTCATGATAATGG+AGG | 0.689473 | 1_1:+49018601 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCATTTTCTTAAATTATAAT+TGG | - | chr1_1:49017902-49017921 | Msa0025660:intron | 10.0% |
| !! | TTAGAAATGAATTAGAATTA+AGG | + | chr1_1:49016581-49016600 | None:intergenic | 15.0% |
| !! | ATATCTTGTTAAATATTTGT+AGG | - | chr1_1:49017246-49017265 | Msa0025660:intron | 15.0% |
| !! | GAATTAACAAATTATCTAAT+AGG | + | chr1_1:49017459-49017478 | None:intergenic | 15.0% |
| !!! | ATTTTAGAGTTTTAATTAAC+AGG | - | chr1_1:49018370-49018389 | Msa0025660:intron | 15.0% |
| !! | GAATTATTTAAACAAAATGA+TGG | + | chr1_1:49018411-49018430 | None:intergenic | 15.0% |
| !! | TTTGTTTAAATAATTCAGAT+TGG | - | chr1_1:49018415-49018434 | Msa0025660:CDS | 15.0% |
| !! | ATAACTTTAATTATATAGTG+TGG | - | chr1_1:49018758-49018777 | Msa0025660:five_prime_UTR | 15.0% |
| !! | ATTTATTTAACTAACCATGT+TGG | + | chr1_1:49016723-49016742 | None:intergenic | 20.0% |
| !!! | AGTTATTTACTTTTGTTTTG+TGG | + | chr1_1:49017014-49017033 | None:intergenic | 20.0% |
| !! | GGTAAAATAATTAAACTTGA+TGG | - | chr1_1:49017168-49017187 | Msa0025660:intron | 20.0% |
| !! | TAACAAGATATGAAATACTT+GGG | + | chr1_1:49017237-49017256 | None:intergenic | 20.0% |
| !! | TTAACAAGATATGAAATACT+TGG | + | chr1_1:49017238-49017257 | None:intergenic | 20.0% |
| !! | TATAAATACCTGTCAAAAAT+GGG | + | chr1_1:49017382-49017401 | None:intergenic | 20.0% |
| !! | ATATAAATACCTGTCAAAAA+TGG | + | chr1_1:49017383-49017402 | None:intergenic | 20.0% |
| !! | ATTGAATATATAACCACATA+TGG | + | chr1_1:49017877-49017896 | None:intergenic | 20.0% |
| !!! | GAGGTTATTTATTTTAGTTA+TGG | - | chr1_1:49018312-49018331 | Msa0025660:CDS | 20.0% |
| !!! | TAAAATGAAGTTTTAAGAAC+CGG | + | chr1_1:49018356-49018375 | None:intergenic | 20.0% |
| !! | AATTATCCGTAATTTATCAA+AGG | - | chr1_1:49018573-49018592 | Msa0025660:CDS | 20.0% |
| !!! | TAATTTTGTGTTTGATTACA+TGG | + | chr1_1:49018618-49018637 | None:intergenic | 20.0% |
| !! | TACCTTTACAAGTTATTAAA+TGG | - | chr1_1:49018685-49018704 | Msa0025660:five_prime_UTR | 20.0% |
| !!! | TGTAAGATTGTTTCACTTTT+TGG | + | chr1_1:49016489-49016508 | None:intergenic | 25.0% |
| ! | ACTAAACTAAACTAAACAGA+TGG | - | chr1_1:49016611-49016630 | Msa0025660:intron | 25.0% |
| ! | TGATTAATAATCAAAGTAGC+TGG | + | chr1_1:49016915-49016934 | None:intergenic | 25.0% |
| !! | TTCTCTTTTAGTACTCTTTT+GGG | - | chr1_1:49017083-49017102 | Msa0025660:intron | 25.0% |
| ! | AATATAGAAGCAAACGTATA+TGG | - | chr1_1:49017147-49017166 | Msa0025660:intron | 25.0% |
| ! | TCTTGTTAAATATTTGTAGG+AGG | - | chr1_1:49017249-49017268 | Msa0025660:intron | 25.0% |
| ! | TAAATATTTGTAGGAGGAAA+AGG | - | chr1_1:49017255-49017274 | Msa0025660:intron | 25.0% |
| ! | ATTAACAAGCAATAATCTTC+AGG | + | chr1_1:49017424-49017443 | None:intergenic | 25.0% |
| ! | ATAAAAACAAGTTAGCTCAA+AGG | + | chr1_1:49017616-49017635 | None:intergenic | 25.0% |
| !!! | TTCTTCCTATTTTTAATCCA+TGG | - | chr1_1:49017644-49017663 | Msa0025660:CDS | 25.0% |
| !! | AGATTCCATGGATTAAAAAT+AGG | + | chr1_1:49017652-49017671 | None:intergenic | 25.0% |
| ! | GATAAATGAGTATCTATCTA+TGG | + | chr1_1:49017693-49017712 | None:intergenic | 25.0% |
| ! | ACACTTTCAATATAAAGTGT+TGG | + | chr1_1:49017808-49017827 | None:intergenic | 25.0% |
| ! | AATTACGGATAATTCTCATT+GGG | + | chr1_1:49018567-49018586 | None:intergenic | 25.0% |
| ! | AAATTACGGATAATTCTCAT+TGG | + | chr1_1:49018568-49018587 | None:intergenic | 25.0% |
| ! | GATAGTCCTTTGATAAATTA+CGG | + | chr1_1:49018582-49018601 | None:intergenic | 25.0% |
| !! | TGCCATTTAATAACTTGTAA+AGG | + | chr1_1:49018690-49018709 | None:intergenic | 25.0% |
| CCATTTCGTAGAATAATGAA+TGG | + | chr1_1:49016308-49016327 | None:intergenic | 30.0% | |
| CCATTCATTATTCTACGAAA+TGG | - | chr1_1:49016305-49016324 | Msa0025660:three_prime_UTR | 30.0% | |
| TGAAATGAAATTGGTGAAGA+TGG | + | chr1_1:49016369-49016388 | None:intergenic | 30.0% | |
| CGCGAATTATGAAATGAAAT+TGG | + | chr1_1:49016378-49016397 | None:intergenic | 30.0% | |
| !!! | ACTTTTTGGTGTTGATTCTA+TGG | + | chr1_1:49016475-49016494 | None:intergenic | 30.0% |
| ACACAGAAGCTATATAAGAA+AGG | + | chr1_1:49016954-49016973 | None:intergenic | 30.0% | |
| ! | GTTCTCTTTTAGTACTCTTT+TGG | - | chr1_1:49017082-49017101 | Msa0025660:intron | 30.0% |
| ! | ATGTTTTTCTTCTTTGCTCT+TGG | - | chr1_1:49017316-49017335 | Msa0025660:intron | 30.0% |
| TATATTACCTTCACTGTTTG+AGG | - | chr1_1:49017578-49017597 | Msa0025660:CDS | 30.0% | |
| TAAACCAACATGTTGAACAT+TGG | + | chr1_1:49017833-49017852 | None:intergenic | 30.0% | |
| !! | ATGTTCAACATGTTGGTTTA+TGG | - | chr1_1:49017833-49017852 | Msa0025660:intron | 30.0% |
| GAATATATAACCACATATGG+TGG | + | chr1_1:49017874-49017893 | None:intergenic | 30.0% | |
| CATGGAGACAATAATTACAT+TGG | + | chr1_1:49017938-49017957 | None:intergenic | 30.0% | |
| TGGTAACAAATTCAATGATG+AGG | + | chr1_1:49018129-49018148 | None:intergenic | 30.0% | |
| GAAGCTGTATTTATGAACTA+AGG | + | chr1_1:49018285-49018304 | None:intergenic | 30.0% | |
| AAATACAGCTTCAATTGATG+AGG | - | chr1_1:49018293-49018312 | Msa0025660:CDS | 30.0% | |
| !! | GATTTTAGTACTACAATTGC+TGG | - | chr1_1:49018493-49018512 | Msa0025660:CDS | 30.0% |
| TGTGACATATATGCATTGTA+AGG | + | chr1_1:49018793-49018812 | None:intergenic | 30.0% | |
| TAGTAAGATCAAGATGAGAG+TGG | + | chr1_1:49016189-49016208 | None:intergenic | 35.0% | |
| CTATTGTTGTGACTTTGTGA+TGG | + | chr1_1:49016241-49016260 | None:intergenic | 35.0% | |
| ATGAAATTGGTGAAGATGGA+CGG | + | chr1_1:49016365-49016384 | None:intergenic | 35.0% | |
| !! | TGGTGTTGATTCTATGGATT+GGG | + | chr1_1:49016469-49016488 | None:intergenic | 35.0% |
| !! | TTGGTGTTGATTCTATGGAT+TGG | + | chr1_1:49016470-49016489 | None:intergenic | 35.0% |
| GAATTGTAAAATGTACCTCC+AGG | + | chr1_1:49016555-49016574 | None:intergenic | 35.0% | |
| TTTAACTAACCATGTTGGCA+GGG | + | chr1_1:49016718-49016737 | None:intergenic | 35.0% | |
| ATTTAACTAACCATGTTGGC+AGG | + | chr1_1:49016719-49016738 | None:intergenic | 35.0% | |
| AACATACCAGCTAATAGCTT+GGG | + | chr1_1:49017301-49017320 | None:intergenic | 35.0% | |
| AAACATACCAGCTAATAGCT+TGG | + | chr1_1:49017302-49017321 | None:intergenic | 35.0% | |
| !! | CAGATAAACCCATTTTTGAC+AGG | - | chr1_1:49017371-49017390 | Msa0025660:CDS | 35.0% |
| TCTGTATTGTCAACAAAGCA+AGG | + | chr1_1:49017557-49017576 | None:intergenic | 35.0% | |
| !! | AACACTGATTCAAGATTCCA+TGG | + | chr1_1:49017664-49017683 | None:intergenic | 35.0% |
| ATGAGTATCTATCTATGGTC+AGG | + | chr1_1:49017688-49017707 | None:intergenic | 35.0% | |
| ATTCAATGATGAGGAAAGAG+TGG | + | chr1_1:49018120-49018139 | None:intergenic | 35.0% | |
| ATTCAGGTAACTGAAAGTGA+GGG | + | chr1_1:49018161-49018180 | None:intergenic | 35.0% | |
| CCATGAACATTTCTTAATCC+AGG | + | chr1_1:49018199-49018218 | None:intergenic | 35.0% | |
| CCTGGATTAAGAAATGTTCA+TGG | - | chr1_1:49018196-49018215 | Msa0025660:intron | 35.0% | |
| AAGAAATGTTCATGGCATCT+TGG | - | chr1_1:49018204-49018223 | Msa0025660:intron | 35.0% | |
| AGAAATGTTCATGGCATCTT+GGG | - | chr1_1:49018205-49018224 | Msa0025660:intron | 35.0% | |
| CACGGTTCAAAAACTGTAAT+TGG | + | chr1_1:49018645-49018664 | None:intergenic | 35.0% | |
| GTTGAAACCACGTGTAAAAG+TGG | - | chr1_1:49016119-49016138 | Msa0025660:three_prime_UTR | 40.0% | |
| AGATCAAGATGAGAGTGGAA+GGG | + | chr1_1:49016184-49016203 | None:intergenic | 40.0% | |
| AAGATCAAGATGAGAGTGGA+AGG | + | chr1_1:49016185-49016204 | None:intergenic | 40.0% | |
| !! | ACGGAGATTCATGATAATGG+AGG | + | chr1_1:49016346-49016365 | None:intergenic | 40.0% |
| TGGACGGAGATTCATGATAA+TGG | + | chr1_1:49016349-49016368 | None:intergenic | 40.0% | |
| !! | GGTGTTGATTCTATGGATTG+GGG | + | chr1_1:49016468-49016487 | None:intergenic | 40.0% |
| GACTTGACTATCTCAACGAA+AGG | + | chr1_1:49016659-49016678 | None:intergenic | 40.0% | |
| !! | CTTTTTGCTATGGGTGGTTA+TGG | - | chr1_1:49016844-49016863 | Msa0025660:intron | 40.0% |
| CATTCGATATTCCGATGATG+TGG | - | chr1_1:49016885-49016904 | Msa0025660:intron | 40.0% | |
| ! | ACCTTCACTGTTTGAGGTAA+TGG | - | chr1_1:49017584-49017603 | Msa0025660:CDS | 40.0% |
| ACCATTACCTCAAACAGTGA+AGG | + | chr1_1:49017588-49017607 | None:intergenic | 40.0% | |
| GTGTCCAATGTTCAACATGT+TGG | - | chr1_1:49017826-49017845 | Msa0025660:intron | 40.0% | |
| TCCTTGTGCAAATAGTTGCA+GGG | - | chr1_1:49017987-49018006 | Msa0025660:intron | 40.0% | |
| AGCTGATGCACAAGTTACTT+TGG | + | chr1_1:49018055-49018074 | None:intergenic | 40.0% | |
| TTCAGGTAACTGAAAGTGAG+GGG | + | chr1_1:49018160-49018179 | None:intergenic | 40.0% | |
| CATTCAGGTAACTGAAAGTG+AGG | + | chr1_1:49018162-49018181 | None:intergenic | 40.0% | |
| AGTTACCTGAATGACATGCA+GGG | - | chr1_1:49018169-49018188 | Msa0025660:intron | 40.0% | |
| AAGGCCTAATTGAAGTCCAA+GGG | + | chr1_1:49018266-49018285 | None:intergenic | 40.0% | |
| TAAGGCCTAATTGAAGTCCA+AGG | + | chr1_1:49018267-49018286 | None:intergenic | 40.0% | |
| !!! | TGAAGTTTTAAGAACCGGTG+CGG | + | chr1_1:49018351-49018370 | None:intergenic | 40.0% |
| !!! | ACTACTCCAGCTTTTTCACA+TGG | - | chr1_1:49018450-49018469 | Msa0025660:CDS | 40.0% |
| CTGTTTCCATGTGAAAAAGC+TGG | + | chr1_1:49018459-49018478 | None:intergenic | 40.0% | |
| !!! | CAGCTTTTTCACATGGAAAC+AGG | - | chr1_1:49018457-49018476 | Msa0025660:CDS | 40.0% |
| ! | ACTACAATTGCTGGTTGACT+TGG | - | chr1_1:49018502-49018521 | Msa0025660:CDS | 40.0% |
| TCTGTATCTAGTTGCGTTCA+CGG | + | chr1_1:49018663-49018682 | None:intergenic | 40.0% | |
| GAAACCACGTGTAAAAGTGG+AGG | - | chr1_1:49016122-49016141 | Msa0025660:three_prime_UTR | 45.0% | |
| GCGGCGTAAAGTAAAGACAA+TGG | + | chr1_1:49016522-49016541 | None:intergenic | 45.0% | |
| CATGCATGAATTGCTCTTGC+AGG | - | chr1_1:49016813-49016832 | Msa0025660:intron | 45.0% | |
| !! | GCAGTGGTGCTTTTTGCTAT+GGG | - | chr1_1:49016835-49016854 | Msa0025660:intron | 45.0% |
| GGTGGTTATGGTACCTATCT+GGG | - | chr1_1:49016856-49016875 | Msa0025660:intron | 45.0% | |
| TCGAATGCGAAAACCCAGAT+AGG | + | chr1_1:49016872-49016891 | None:intergenic | 45.0% | |
| TAGCTGGTGTACCACATCAT+CGG | + | chr1_1:49016899-49016918 | None:intergenic | 45.0% | |
| TTTGTAGGAGGAAAAGGCCA+AGG | - | chr1_1:49017261-49017280 | Msa0025660:intron | 45.0% | |
| TTGCATCCCAAGCTATTAGC+TGG | - | chr1_1:49017292-49017311 | Msa0025660:intron | 45.0% | |
| TTCTTTGCTCTTGGAGCTAC+TGG | - | chr1_1:49017325-49017344 | Msa0025660:intron | 45.0% | |
| TACAGTCCTCATGCTGTTAC+AGG | - | chr1_1:49017522-49017541 | Msa0025660:intron | 45.0% | |
| ATAACGCCTGTAACAGCATG+AGG | + | chr1_1:49017531-49017550 | None:intergenic | 45.0% | |
| CATGCTGTTACAGGCGTTAT+TGG | - | chr1_1:49017531-49017550 | Msa0025660:intron | 45.0% | |
| TATTGTCTCCATGTCTGCGT+CGG | - | chr1_1:49017945-49017964 | Msa0025660:intron | 45.0% | |
| GTCCTTGTGCAAATAGTTGC+AGG | - | chr1_1:49017986-49018005 | Msa0025660:intron | 45.0% | |
| ACCCTGCAACTATTTGCACA+AGG | + | chr1_1:49017991-49018010 | None:intergenic | 45.0% | |
| TCAGGTAACTGAAAGTGAGG+GGG | + | chr1_1:49018159-49018178 | None:intergenic | 45.0% | |
| CAGTTACCTGAATGACATGC+AGG | - | chr1_1:49018168-49018187 | Msa0025660:intron | 45.0% | |
| GATTTCCCTGCATGTCATTC+AGG | + | chr1_1:49018177-49018196 | None:intergenic | 45.0% | |
| AATGACATGCAGGGAAATCC+TGG | - | chr1_1:49018178-49018197 | Msa0025660:intron | 45.0% | |
| GTGTATATTCTTTCCCGCAC+CGG | - | chr1_1:49018334-49018353 | Msa0025660:intron | 45.0% | |
| !!! | GAAGTTTTAAGAACCGGTGC+GGG | + | chr1_1:49018350-49018369 | None:intergenic | 45.0% |
| TCGCGCCAAATTTCCTCTCT+TGG | - | chr1_1:49016393-49016412 | Msa0025660:three_prime_UTR | 50.0% | |
| CTGCGCCAAGAGAGGAAATT+TGG | + | chr1_1:49016401-49016420 | None:intergenic | 50.0% | |
| TTGTGGCGTGACATTTGAGG+TGG | + | chr1_1:49016434-49016453 | None:intergenic | 50.0% | |
| GGTTTGTGGCGTGACATTTG+AGG | + | chr1_1:49016437-49016456 | None:intergenic | 50.0% | |
| ! | TTGGGGTGAGTCTTGGTTTG+TGG | + | chr1_1:49016451-49016470 | None:intergenic | 50.0% |
| !! | CTATGGATTGGGGTGAGTCT+TGG | + | chr1_1:49016458-49016477 | None:intergenic | 50.0% |
| AGTCGTTGAATCTGCCTGAC+TGG | - | chr1_1:49016675-49016694 | Msa0025660:CDS | 50.0% | |
| !! | TGCCTGACTGGCTTGTACAT+TGG | - | chr1_1:49016687-49016706 | Msa0025660:CDS | 50.0% |
| !! | GCCTGACTGGCTTGTACATT+GGG | - | chr1_1:49016688-49016707 | Msa0025660:CDS | 50.0% |
| !! | CCTGACTGGCTTGTACATTG+GGG | - | chr1_1:49016689-49016708 | Msa0025660:CDS | 50.0% |
| TGAATTGCTCTTGCAGGCAG+TGG | - | chr1_1:49016819-49016838 | Msa0025660:intron | 50.0% | |
| !! | GGCAGTGGTGCTTTTTGCTA+TGG | - | chr1_1:49016834-49016853 | Msa0025660:intron | 50.0% |
| !! | GTGGTGCTTTTTGCTATGGG+TGG | - | chr1_1:49016838-49016857 | Msa0025660:intron | 50.0% |
| GGGTGGTTATGGTACCTATC+TGG | - | chr1_1:49016855-49016874 | Msa0025660:intron | 50.0% | |
| TAGCTTGGGATGCAAGTCCT+TGG | + | chr1_1:49017287-49017306 | None:intergenic | 50.0% | |
| TTTGCTCTTGGAGCTACTGG+CGG | - | chr1_1:49017328-49017347 | Msa0025660:intron | 50.0% | |
| TGACACGACACCACCATATG+TGG | - | chr1_1:49017861-49017880 | Msa0025660:intron | 50.0% | |
| GAAAGTGAGGGGGTGAAAAG+TGG | + | chr1_1:49018149-49018168 | None:intergenic | 50.0% | |
| TTTCTTGTCCATGCTGCCCT+TGG | - | chr1_1:49018247-49018266 | Msa0025660:CDS | 50.0% | |
| ATTGAAGTCCAAGGGCAGCA+TGG | + | chr1_1:49018258-49018277 | None:intergenic | 50.0% | |
| GCTGCCCTTGGACTTCAATT+AGG | - | chr1_1:49018259-49018278 | Msa0025660:CDS | 50.0% | |
| !! | GCGACCTCCACTTTTACACG+TGG | + | chr1_1:49016129-49016148 | None:intergenic | 55.0% |
| AAGATGAGAGTGGAAGGGCG+AGG | + | chr1_1:49016179-49016198 | None:intergenic | 55.0% | |
| ! | TGGCGTGACATTTGAGGTGG+AGG | + | chr1_1:49016431-49016450 | None:intergenic | 55.0% |
| ACCTCCAGGTAAGAGAGCAG+CGG | + | chr1_1:49016541-49016560 | None:intergenic | 55.0% | |
| CCCCAATGTACAAGCCAGTC+AGG | + | chr1_1:49016692-49016711 | None:intergenic | 55.0% | |
| !! | TATGAGCACCGACGCAGACA+TGG | + | chr1_1:49017956-49017975 | None:intergenic | 55.0% |
| TACGCCGCTGCTCTCTTACC+TGG | - | chr1_1:49016534-49016553 | Msa0025660:intron | 60.0% | |
| TTGGGGTCACCCTGCCAACA+TGG | - | chr1_1:49016706-49016725 | Msa0025660:CDS | 60.0% | |
| GGAGGAAAAGGCCAAGGCCA+AGG | - | chr1_1:49017267-49017286 | Msa0025660:intron | 60.0% | |
| GGGATGCAAGTCCTTGGCCT+TGG | + | chr1_1:49017281-49017300 | None:intergenic | 60.0% | |
| GCGAGTTGCTGCGCCAAGAG+AGG | + | chr1_1:49016409-49016428 | None:intergenic | 65.0% | |
| GCCGCTGCTCTCTTACCTGG+AGG | - | chr1_1:49016537-49016556 | Msa0025660:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 49016118 | 49018848 | 49016118 | ID=Msa0025660;Name=Msa0025660 |
| chr1_1 | mRNA | 49016118 | 49018848 | 49016118 | ID=Msa0025660-mRNA-1;Parent=Msa0025660;Name=Msa0025660-mRNA-1;_AED=0.04;_eAED=0.04;_QI=206|1|1|1|0.83|0.71|7|436|235 |
| chr1_1 | exon | 49016118 | 49016533 | 49016118 | ID=Msa0025660-mRNA-1:exon:14124;Parent=Msa0025660-mRNA-1 |
| chr1_1 | exon | 49016652 | 49016776 | 49016652 | ID=Msa0025660-mRNA-1:exon:14123;Parent=Msa0025660-mRNA-1 |
| chr1_1 | exon | 49017367 | 49017439 | 49017367 | ID=Msa0025660-mRNA-1:exon:14122;Parent=Msa0025660-mRNA-1 |
| chr1_1 | exon | 49017574 | 49017698 | 49017574 | ID=Msa0025660-mRNA-1:exon:14121;Parent=Msa0025660-mRNA-1 |
| chr1_1 | exon | 49018060 | 49018131 | 49018060 | ID=Msa0025660-mRNA-1:exon:14120;Parent=Msa0025660-mRNA-1 |
| chr1_1 | exon | 49018239 | 49018336 | 49018239 | ID=Msa0025660-mRNA-1:exon:14119;Parent=Msa0025660-mRNA-1 |
| chr1_1 | exon | 49018408 | 49018848 | 49018408 | ID=Msa0025660-mRNA-1:exon:14118;Parent=Msa0025660-mRNA-1 |
| chr1_1 | five_prime_UTR | 49018643 | 49018848 | 49018643 | ID=Msa0025660-mRNA-1:five_prime_utr;Parent=Msa0025660-mRNA-1 |
| chr1_1 | CDS | 49018408 | 49018642 | 49018408 | ID=Msa0025660-mRNA-1:cds;Parent=Msa0025660-mRNA-1 |
| chr1_1 | CDS | 49018239 | 49018336 | 49018239 | ID=Msa0025660-mRNA-1:cds;Parent=Msa0025660-mRNA-1 |
| chr1_1 | CDS | 49018060 | 49018131 | 49018060 | ID=Msa0025660-mRNA-1:cds;Parent=Msa0025660-mRNA-1 |
| chr1_1 | CDS | 49017574 | 49017698 | 49017574 | ID=Msa0025660-mRNA-1:cds;Parent=Msa0025660-mRNA-1 |
| chr1_1 | CDS | 49017367 | 49017439 | 49017367 | ID=Msa0025660-mRNA-1:cds;Parent=Msa0025660-mRNA-1 |
| chr1_1 | CDS | 49016672 | 49016776 | 49016672 | ID=Msa0025660-mRNA-1:cds;Parent=Msa0025660-mRNA-1 |
| chr1_1 | three_prime_UTR | 49016652 | 49016671 | 49016652 | ID=Msa0025660-mRNA-1:three_prime_utr;Parent=Msa0025660-mRNA-1 |
| chr1_1 | three_prime_UTR | 49016118 | 49016533 | 49016118 | ID=Msa0025660-mRNA-1:three_prime_utr;Parent=Msa0025660-mRNA-1 |
| Gene Sequence |
| Protein sequence |
