AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0236350


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0236350 MtrunA17_Chr2g0286401 98.058 412 7 1 1 411 40 451 0.0 823
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0236350 AT5G18660.1 71.327 422 100 5 1 408 1 415 0.0 600

Find 86 sgRNAs with CRISPR-Local

Find 228 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCAAATCTTGTTCACTTAT+AGG 0.199757 2_2:-9319652 None:intergenic
ACCAAGACATTAACATCTTT+TGG 0.207193 2_2:-9319067 None:intergenic
GAAAGTTCCAATAGGGATTA+TGG 0.213230 2_2:+9319813 Msa0236350:CDS
TTTCTCTGATGTGACAAATT+TGG 0.231196 2_2:+9319243 Msa0236350:CDS
TAGAGAAAAGAGTGGAATAA+AGG 0.258502 2_2:+9319168 Msa0236350:CDS
GGCTGAAAGTATGTTGATTT+TGG 0.261140 2_2:+9319927 Msa0236350:CDS
TATTGGTGTTCTTGACAATT+TGG 0.267908 2_2:+9319843 Msa0236350:CDS
GTCTTGGTAGTAGGTTCAAC+TGG 0.297195 2_2:+9319082 Msa0236350:CDS
TCGCTGTACTCGCCAGTATC+AGG 0.304596 2_2:-9319952 None:intergenic
ACCTATAAGTGAACAAGATT+TGG 0.307663 2_2:+9319651 Msa0236350:CDS
TTGGAAGATGCTGCTGAGTT+TGG 0.326591 2_2:+9319883 Msa0236350:CDS
ACAACATTGAATGAGTTAAA+AGG 0.336207 2_2:+9319208 Msa0236350:CDS
TTCTTGCTTCTAAATGTTGA+TGG 0.349443 2_2:-9319043 None:intergenic
GCAAAATCCATAATCCCTAT+TGG 0.356770 2_2:-9319820 None:intergenic
TTTAGGTGGTCAAGTTGATT+TGG 0.358962 2_2:+9319573 Msa0236350:CDS
GAGGGTTTGGTGTTTGAGTG+AGG 0.371768 2_2:-9318882 None:intergenic
ATGGAGGGGTTAAGGATTCA+TGG 0.373729 2_2:+9319338 Msa0236350:CDS
GGTTAAGGTATTTCCTTCAT+TGG 0.375273 2_2:+9319864 Msa0236350:CDS
TAGTAGAAATGGAGGGGTTA+AGG 0.375942 2_2:+9319330 Msa0236350:CDS
AGAAATTGAAGGAGAGGGTT+TGG 0.390580 2_2:-9318895 None:intergenic
TGTTCTTGACAATTTGGTTA+AGG 0.399383 2_2:+9319849 Msa0236350:CDS
AGGGTTTGGTGTTTGAGTGA+GGG 0.399831 2_2:-9318881 None:intergenic
AGTTCTTGAAAGTTCCAATA+GGG 0.404401 2_2:+9319806 Msa0236350:CDS
TCTTGTCTTGCTAGTAGAAA+TGG 0.408504 2_2:+9319319 Msa0236350:CDS
AGAGAAAAGAGTGGAATAAA+GGG 0.408945 2_2:+9319169 Msa0236350:CDS
GTAGGTTCAACTGGGTATAT+AGG 0.410679 2_2:+9319091 Msa0236350:CDS
TCTTGCTTCTAAATGTTGAT+GGG 0.421309 2_2:-9319042 None:intergenic
TCACTTCATCAACCTATTCA+AGG 0.430086 2_2:+9318934 Msa0236350:CDS
AAGTTCTTGAAAGTTCCAAT+AGG 0.430764 2_2:+9319805 Msa0236350:CDS
GTGAAAGAGTTGATTCAAAG+AGG 0.433123 2_2:+9319124 Msa0236350:CDS
CAACTTGTTCAGATTGTGAA+AGG 0.441779 2_2:-9319012 None:intergenic
TCCAAAAGATGTTAATGTCT+TGG 0.443326 2_2:+9319066 Msa0236350:CDS
GATGTTAATGTCTTGGTAGT+AGG 0.450407 2_2:+9319073 Msa0236350:CDS
GGGTTTGGTGTTTGAGTGAG+GGG 0.452202 2_2:-9318880 None:intergenic
CAAGTTGATTTGGTGAAAGA+TGG 0.452904 2_2:+9319583 Msa0236350:CDS
GTGCTCAGGGAAGGGATGGC+TGG 0.454004 2_2:+9320027 Msa0236350:CDS
AAAATTTCCCCTTGTTCCAA+TGG 0.458224 2_2:-9319757 None:intergenic
AATGGAGTCAATGCCTTCCC+TGG 0.459081 2_2:-9319739 None:intergenic
GCCTTCCCTGGTCCTCCAAT+AGG 0.460882 2_2:-9319727 None:intergenic
CCATCACCAAACATCACATA+AGG 0.461120 2_2:-9319610 None:intergenic
TTTGCTAGGGTGCTCAGGGA+AGG 0.472138 2_2:+9320018 Msa0236350:CDS
GTGAAGAGAAATTGAAGGAG+AGG 0.474439 2_2:-9318901 None:intergenic
AGGTTGATGAAGTGAGAAGG+AGG 0.475446 2_2:-9318926 None:intergenic
TTGCTAGGGTGCTCAGGGAA+GGG 0.475808 2_2:+9320019 Msa0236350:CDS
GGATGAGTTGGTAAAGGAAG+CGG 0.485061 2_2:+9319495 Msa0236350:CDS
GGGAAGCCTTATGTGATGTT+TGG 0.486837 2_2:+9319604 Msa0236350:CDS
TGAAAGAGTTGATTCAAAGA+GGG 0.488936 2_2:+9319125 Msa0236350:CDS
GATGAGAAGACGCCGAGCTA+TGG 0.490154 2_2:+9319973 Msa0236350:CDS
AGGAAGCGGAGAAAGATGAT+AGG 0.500448 2_2:+9319509 Msa0236350:CDS
TAGGGTGCTCAGGGAAGGGA+TGG 0.504745 2_2:+9320023 Msa0236350:CDS
AAGTTGATTTGGTGAAAGAT+GGG 0.505222 2_2:+9319584 Msa0236350:CDS
ATGAGAAGACGCCGAGCTAT+GGG 0.509494 2_2:+9319974 Msa0236350:CDS
AGGGAAGGCATTGACTCCAT+TGG 0.512516 2_2:+9319741 Msa0236350:CDS
AACTTGTTCAGATTGTGAAA+GGG 0.521535 2_2:-9319011 None:intergenic
GCTTGAGGATGAGTTGGTAA+AGG 0.525596 2_2:+9319489 Msa0236350:CDS
TCAGCAGCATCTTCCAATGA+AGG 0.532717 2_2:-9319877 None:intergenic
TGAGGGGTGTGTGATGAAAG+TGG 0.534640 2_2:-9318864 None:intergenic
ATTGGAACTTTCAAGAACTT+AGG 0.538881 2_2:-9319802 None:intergenic
CTTGCTTCTAAATGTTGATG+GGG 0.544812 2_2:-9319041 None:intergenic
AGGGTGTGAAGAGAAATTGA+AGG 0.545623 2_2:-9318906 None:intergenic
AATAGGTTGATGAAGTGAGA+AGG 0.547274 2_2:-9318929 None:intergenic
TGAAGAGAAATTGAAGGAGA+GGG 0.547534 2_2:-9318900 None:intergenic
GCACGCTGAAACTCGAGAAG+AGG 0.548329 2_2:-9319457 None:intergenic
GGGATGGCTGGTCAAGAGCT+AGG 0.549334 2_2:+9320039 Msa0236350:CDS
ACCTATTGGAGGACCAGGGA+AGG 0.552480 2_2:+9319726 Msa0236350:CDS
GCGTGCGAAGCTGAAGCTTG+AGG 0.553193 2_2:+9319474 Msa0236350:CDS
GCTGAAGCTTGAGGATGAGT+TGG 0.553213 2_2:+9319483 Msa0236350:CDS
AACGTATCATTCCCATAGCT+CGG 0.554956 2_2:-9319985 None:intergenic
GATTTGAAGAACCTAGGTGT+TGG 0.562927 2_2:+9319280 Msa0236350:CDS
CCTTATGTGATGTTTGGTGA+TGG 0.564492 2_2:+9319610 Msa0236350:CDS
GGTTGATGAAGTGAGAAGGA+GGG 0.571070 2_2:-9318925 None:intergenic
GCATTGACTCCATTGGAACA+AGG 0.574091 2_2:+9319748 Msa0236350:CDS
GATGAGGATTTGAAGAACCT+AGG 0.591299 2_2:+9319274 Msa0236350:CDS
TCTTGCTAGTAGAAATGGAG+GGG 0.600302 2_2:+9319324 Msa0236350:CDS
CATTGACTCCATTGGAACAA+GGG 0.600349 2_2:+9319749 Msa0236350:CDS
GAGCTATGGGAATGATACGT+TGG 0.608370 2_2:+9319987 Msa0236350:CDS
TGTTGATTGTGTAATGAGTG+AGG 0.616265 2_2:+9319684 Msa0236350:CDS
ATTGACTCCATTGGAACAAG+GGG 0.618767 2_2:+9319750 Msa0236350:CDS
GTCTTGCTAGTAGAAATGGA+GGG 0.622888 2_2:+9319323 Msa0236350:CDS
TGTCTTGCTAGTAGAAATGG+AGG 0.623450 2_2:+9319322 Msa0236350:CDS
GGTTTAGTTATAGTATAGTG+AGG 0.643964 2_2:+9319530 Msa0236350:CDS
GCAATAGCTAGAGAAAAGAG+TGG 0.645121 2_2:+9319160 Msa0236350:CDS
TGAAAGTGGAAGAATAACAC+AGG 0.652551 2_2:-9318850 None:intergenic
CAACATCAAAACCAACACCT+AGG 0.664857 2_2:-9319291 None:intergenic
TCTTGGTAGTAGGTTCAACT+GGG 0.681666 2_2:+9319083 Msa0236350:CDS
GAAAGTGGAAGAATAACACA+GGG 0.724228 2_2:-9318849 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTGTTTGTTATACTTAAT+GGG - chr2_2:9318974-9318993 None:intergenic 15.0%
!!! TTTTTGTTTGTTATACTTAA+TGG - chr2_2:9318975-9318994 None:intergenic 15.0%
!!! AAATTTTGTTTAAGCTTTTA+GGG + chr2_2:9319773-9319792 Msa0236350:CDS 15.0%
!!! TTTTGTTTGTTATACTTAAT+GGG - chr2_2:9318974-9318993 None:intergenic 15.0%
!!! TTTTTGTTTGTTATACTTAA+TGG - chr2_2:9318975-9318994 None:intergenic 15.0%
!!! AAATTTTGTTTAAGCTTTTA+GGG + chr2_2:9319773-9319792 Msa0236350:CDS 15.0%
!!! ATTAACAAGATTTTACCTAT+TGG + chr2_2:9319712-9319731 Msa0236350:CDS 20.0%
!!! GAAATTTTGTTTAAGCTTTT+AGG + chr2_2:9319772-9319791 Msa0236350:CDS 20.0%
!!! ATTAACAAGATTTTACCTAT+TGG + chr2_2:9319712-9319731 Msa0236350:CDS 20.0%
!!! GAAATTTTGTTTAAGCTTTT+AGG + chr2_2:9319772-9319791 Msa0236350:CDS 20.0%
! ACAACATTGAATGAGTTAAA+AGG + chr2_2:9319208-9319227 Msa0236350:CDS 25.0%
!!! AAATTTGGATGTTTTTGATG+AGG + chr2_2:9319258-9319277 Msa0236350:CDS 25.0%
!! TTCTCATTTTGTATTGCTTT+CGG + chr2_2:9319417-9319436 Msa0236350:CDS 25.0%
! ACAACATTGAATGAGTTAAA+AGG + chr2_2:9319208-9319227 Msa0236350:CDS 25.0%
!!! AAATTTGGATGTTTTTGATG+AGG + chr2_2:9319258-9319277 Msa0236350:CDS 25.0%
!! TTCTCATTTTGTATTGCTTT+CGG + chr2_2:9319417-9319436 Msa0236350:CDS 25.0%
! TGTGTGATTTTACCTTGAAT+AGG - chr2_2:9318949-9318968 None:intergenic 30.0%
! AACTTGTTCAGATTGTGAAA+GGG - chr2_2:9319014-9319033 None:intergenic 30.0%
TCTTGCTTCTAAATGTTGAT+GGG - chr2_2:9319045-9319064 None:intergenic 30.0%
TTCTTGCTTCTAAATGTTGA+TGG - chr2_2:9319046-9319065 None:intergenic 30.0%
TCCAAAAGATGTTAATGTCT+TGG + chr2_2:9319066-9319085 Msa0236350:CDS 30.0%
! ACCAAGACATTAACATCTTT+TGG - chr2_2:9319070-9319089 None:intergenic 30.0%
! TGAAAGAGTTGATTCAAAGA+GGG + chr2_2:9319125-9319144 Msa0236350:CDS 30.0%
TAGAGAAAAGAGTGGAATAA+AGG + chr2_2:9319168-9319187 Msa0236350:CDS 30.0%
AGAGAAAAGAGTGGAATAAA+GGG + chr2_2:9319169-9319188 Msa0236350:CDS 30.0%
TTTCTCTGATGTGACAAATT+TGG + chr2_2:9319243-9319262 Msa0236350:CDS 30.0%
! ACTAAGAATAGTCTTTTAGC+TGG + chr2_2:9319379-9319398 Msa0236350:CDS 30.0%
GGTTTAGTTATAGTATAGTG+AGG + chr2_2:9319530-9319549 Msa0236350:CDS 30.0%
ACCTAAACTCTTAAAAAACG+CGG - chr2_2:9319560-9319579 None:intergenic 30.0%
!! AAGTTGATTTGGTGAAAGAT+GGG + chr2_2:9319584-9319603 Msa0236350:CDS 30.0%
ACCTATAAGTGAACAAGATT+TGG + chr2_2:9319651-9319670 Msa0236350:CDS 30.0%
! AACAAGATTTTACCTATTGG+AGG + chr2_2:9319715-9319734 Msa0236350:CDS 30.0%
!! TTTGTTTAAGCTTTTAGGGA+AGG + chr2_2:9319777-9319796 Msa0236350:CDS 30.0%
ATTGGAACTTTCAAGAACTT+AGG - chr2_2:9319805-9319824 None:intergenic 30.0%
AAGTTCTTGAAAGTTCCAAT+AGG + chr2_2:9319805-9319824 Msa0236350:CDS 30.0%
AGTTCTTGAAAGTTCCAATA+GGG + chr2_2:9319806-9319825 Msa0236350:CDS 30.0%
! TATTGGTGTTCTTGACAATT+TGG + chr2_2:9319843-9319862 Msa0236350:CDS 30.0%
TGTTCTTGACAATTTGGTTA+AGG + chr2_2:9319849-9319868 Msa0236350:CDS 30.0%
!! AAAAATTGGAAGGTACTATG+CGG + chr2_2:9319906-9319925 Msa0236350:CDS 30.0%
!!! GTTGGAAGATTTTTTTGCTA+GGG + chr2_2:9320005-9320024 Msa0236350:CDS 30.0%
! TGTGTGATTTTACCTTGAAT+AGG - chr2_2:9318949-9318968 None:intergenic 30.0%
! AACTTGTTCAGATTGTGAAA+GGG - chr2_2:9319014-9319033 None:intergenic 30.0%
TCTTGCTTCTAAATGTTGAT+GGG - chr2_2:9319045-9319064 None:intergenic 30.0%
TTCTTGCTTCTAAATGTTGA+TGG - chr2_2:9319046-9319065 None:intergenic 30.0%
TCCAAAAGATGTTAATGTCT+TGG + chr2_2:9319066-9319085 Msa0236350:CDS 30.0%
! ACCAAGACATTAACATCTTT+TGG - chr2_2:9319070-9319089 None:intergenic 30.0%
! TGAAAGAGTTGATTCAAAGA+GGG + chr2_2:9319125-9319144 Msa0236350:CDS 30.0%
TAGAGAAAAGAGTGGAATAA+AGG + chr2_2:9319168-9319187 Msa0236350:CDS 30.0%
AGAGAAAAGAGTGGAATAAA+GGG + chr2_2:9319169-9319188 Msa0236350:CDS 30.0%
TTTCTCTGATGTGACAAATT+TGG + chr2_2:9319243-9319262 Msa0236350:CDS 30.0%
! ACTAAGAATAGTCTTTTAGC+TGG + chr2_2:9319379-9319398 Msa0236350:CDS 30.0%
GGTTTAGTTATAGTATAGTG+AGG + chr2_2:9319530-9319549 Msa0236350:CDS 30.0%
ACCTAAACTCTTAAAAAACG+CGG - chr2_2:9319560-9319579 None:intergenic 30.0%
!! AAGTTGATTTGGTGAAAGAT+GGG + chr2_2:9319584-9319603 Msa0236350:CDS 30.0%
ACCTATAAGTGAACAAGATT+TGG + chr2_2:9319651-9319670 Msa0236350:CDS 30.0%
! AACAAGATTTTACCTATTGG+AGG + chr2_2:9319715-9319734 Msa0236350:CDS 30.0%
!! TTTGTTTAAGCTTTTAGGGA+AGG + chr2_2:9319777-9319796 Msa0236350:CDS 30.0%
ATTGGAACTTTCAAGAACTT+AGG - chr2_2:9319805-9319824 None:intergenic 30.0%
AAGTTCTTGAAAGTTCCAAT+AGG + chr2_2:9319805-9319824 Msa0236350:CDS 30.0%
AGTTCTTGAAAGTTCCAATA+GGG + chr2_2:9319806-9319825 Msa0236350:CDS 30.0%
! TATTGGTGTTCTTGACAATT+TGG + chr2_2:9319843-9319862 Msa0236350:CDS 30.0%
TGTTCTTGACAATTTGGTTA+AGG + chr2_2:9319849-9319868 Msa0236350:CDS 30.0%
!! AAAAATTGGAAGGTACTATG+CGG + chr2_2:9319906-9319925 Msa0236350:CDS 30.0%
!!! GTTGGAAGATTTTTTTGCTA+GGG + chr2_2:9320005-9320024 Msa0236350:CDS 30.0%
GAAAGTGGAAGAATAACACA+GGG - chr2_2:9318852-9318871 None:intergenic 35.0%
TGAAAGTGGAAGAATAACAC+AGG - chr2_2:9318853-9318872 None:intergenic 35.0%
TGAAGAGAAATTGAAGGAGA+GGG - chr2_2:9318903-9318922 None:intergenic 35.0%
!! AATAGGTTGATGAAGTGAGA+AGG - chr2_2:9318932-9318951 None:intergenic 35.0%
TCACTTCATCAACCTATTCA+AGG + chr2_2:9318934-9318953 Msa0236350:CDS 35.0%
! CAACTTGTTCAGATTGTGAA+AGG - chr2_2:9319015-9319034 None:intergenic 35.0%
CTTGCTTCTAAATGTTGATG+GGG - chr2_2:9319044-9319063 None:intergenic 35.0%
! GATGTTAATGTCTTGGTAGT+AGG + chr2_2:9319073-9319092 Msa0236350:CDS 35.0%
! GTGAAAGAGTTGATTCAAAG+AGG + chr2_2:9319124-9319143 Msa0236350:CDS 35.0%
TCTTGTCTTGCTAGTAGAAA+TGG + chr2_2:9319319-9319338 Msa0236350:CDS 35.0%
!! AGAATAGTCTTTTAGCTGGT+AGG + chr2_2:9319383-9319402 Msa0236350:CDS 35.0%
AAACTCTTAAAAAACGCGGT+CGG - chr2_2:9319556-9319575 None:intergenic 35.0%
!!! ACCGCGTTTTTTAAGAGTTT+AGG + chr2_2:9319556-9319575 Msa0236350:CDS 35.0%
!!! GCGTTTTTTAAGAGTTTAGG+TGG + chr2_2:9319559-9319578 Msa0236350:CDS 35.0%
!! TTTAGGTGGTCAAGTTGATT+TGG + chr2_2:9319573-9319592 Msa0236350:CDS 35.0%
!! CAAGTTGATTTGGTGAAAGA+TGG + chr2_2:9319583-9319602 Msa0236350:CDS 35.0%
GCCAAATCTTGTTCACTTAT+AGG - chr2_2:9319655-9319674 None:intergenic 35.0%
! TGTTGATTGTGTAATGAGTG+AGG + chr2_2:9319684-9319703 Msa0236350:CDS 35.0%
AAAATTTCCCCTTGTTCCAA+TGG - chr2_2:9319760-9319779 None:intergenic 35.0%
GAAAGTTCCAATAGGGATTA+TGG + chr2_2:9319813-9319832 Msa0236350:CDS 35.0%
GCAAAATCCATAATCCCTAT+TGG - chr2_2:9319823-9319842 None:intergenic 35.0%
!! GGGATTATGGATTTTGCTAT+TGG + chr2_2:9319826-9319845 Msa0236350:CDS 35.0%
! GGTTAAGGTATTTCCTTCAT+TGG + chr2_2:9319864-9319883 Msa0236350:CDS 35.0%
CTGAGTTTGGAAAAATTGGA+AGG + chr2_2:9319896-9319915 Msa0236350:CDS 35.0%
!!! GGCTGAAAGTATGTTGATTT+TGG + chr2_2:9319927-9319946 Msa0236350:CDS 35.0%
! TTGATTTTGGATCCTGATAC+TGG + chr2_2:9319940-9319959 Msa0236350:CDS 35.0%
!!! CGTTGGAAGATTTTTTTGCT+AGG + chr2_2:9320004-9320023 Msa0236350:CDS 35.0%
GAAAGTGGAAGAATAACACA+GGG - chr2_2:9318852-9318871 None:intergenic 35.0%
TGAAAGTGGAAGAATAACAC+AGG - chr2_2:9318853-9318872 None:intergenic 35.0%
TGAAGAGAAATTGAAGGAGA+GGG - chr2_2:9318903-9318922 None:intergenic 35.0%
!! AATAGGTTGATGAAGTGAGA+AGG - chr2_2:9318932-9318951 None:intergenic 35.0%
TCACTTCATCAACCTATTCA+AGG + chr2_2:9318934-9318953 Msa0236350:CDS 35.0%
! CAACTTGTTCAGATTGTGAA+AGG - chr2_2:9319015-9319034 None:intergenic 35.0%
CTTGCTTCTAAATGTTGATG+GGG - chr2_2:9319044-9319063 None:intergenic 35.0%
! GATGTTAATGTCTTGGTAGT+AGG + chr2_2:9319073-9319092 Msa0236350:CDS 35.0%
! GTGAAAGAGTTGATTCAAAG+AGG + chr2_2:9319124-9319143 Msa0236350:CDS 35.0%
TCTTGTCTTGCTAGTAGAAA+TGG + chr2_2:9319319-9319338 Msa0236350:CDS 35.0%
!! AGAATAGTCTTTTAGCTGGT+AGG + chr2_2:9319383-9319402 Msa0236350:CDS 35.0%
AAACTCTTAAAAAACGCGGT+CGG - chr2_2:9319556-9319575 None:intergenic 35.0%
!!! ACCGCGTTTTTTAAGAGTTT+AGG + chr2_2:9319556-9319575 Msa0236350:CDS 35.0%
!!! GCGTTTTTTAAGAGTTTAGG+TGG + chr2_2:9319559-9319578 Msa0236350:CDS 35.0%
!! TTTAGGTGGTCAAGTTGATT+TGG + chr2_2:9319573-9319592 Msa0236350:CDS 35.0%
!! CAAGTTGATTTGGTGAAAGA+TGG + chr2_2:9319583-9319602 Msa0236350:CDS 35.0%
GCCAAATCTTGTTCACTTAT+AGG - chr2_2:9319655-9319674 None:intergenic 35.0%
! TGTTGATTGTGTAATGAGTG+AGG + chr2_2:9319684-9319703 Msa0236350:CDS 35.0%
AAAATTTCCCCTTGTTCCAA+TGG - chr2_2:9319760-9319779 None:intergenic 35.0%
GAAAGTTCCAATAGGGATTA+TGG + chr2_2:9319813-9319832 Msa0236350:CDS 35.0%
GCAAAATCCATAATCCCTAT+TGG - chr2_2:9319823-9319842 None:intergenic 35.0%
!! GGGATTATGGATTTTGCTAT+TGG + chr2_2:9319826-9319845 Msa0236350:CDS 35.0%
! GGTTAAGGTATTTCCTTCAT+TGG + chr2_2:9319864-9319883 Msa0236350:CDS 35.0%
CTGAGTTTGGAAAAATTGGA+AGG + chr2_2:9319896-9319915 Msa0236350:CDS 35.0%
!!! GGCTGAAAGTATGTTGATTT+TGG + chr2_2:9319927-9319946 Msa0236350:CDS 35.0%
! TTGATTTTGGATCCTGATAC+TGG + chr2_2:9319940-9319959 Msa0236350:CDS 35.0%
!!! CGTTGGAAGATTTTTTTGCT+AGG + chr2_2:9320004-9320023 Msa0236350:CDS 35.0%
AGAAATTGAAGGAGAGGGTT+TGG - chr2_2:9318898-9318917 None:intergenic 40.0%
GTGAAGAGAAATTGAAGGAG+AGG - chr2_2:9318904-9318923 None:intergenic 40.0%
AGGGTGTGAAGAGAAATTGA+AGG - chr2_2:9318909-9318928 None:intergenic 40.0%
! TCTTGGTAGTAGGTTCAACT+GGG + chr2_2:9319083-9319102 Msa0236350:CDS 40.0%
GTAGGTTCAACTGGGTATAT+AGG + chr2_2:9319091-9319110 Msa0236350:CDS 40.0%
GCAATAGCTAGAGAAAAGAG+TGG + chr2_2:9319160-9319179 Msa0236350:CDS 40.0%
GATGAGGATTTGAAGAACCT+AGG + chr2_2:9319274-9319293 Msa0236350:CDS 40.0%
GATTTGAAGAACCTAGGTGT+TGG + chr2_2:9319280-9319299 Msa0236350:CDS 40.0%
CAACATCAAAACCAACACCT+AGG - chr2_2:9319294-9319313 None:intergenic 40.0%
TGTCTTGCTAGTAGAAATGG+AGG + chr2_2:9319322-9319341 Msa0236350:CDS 40.0%
GTCTTGCTAGTAGAAATGGA+GGG + chr2_2:9319323-9319342 Msa0236350:CDS 40.0%
TCTTGCTAGTAGAAATGGAG+GGG + chr2_2:9319324-9319343 Msa0236350:CDS 40.0%
TAGTAGAAATGGAGGGGTTA+AGG + chr2_2:9319330-9319349 Msa0236350:CDS 40.0%
!! CTTTTAGCTGGTAGGAAACT+TGG + chr2_2:9319391-9319410 Msa0236350:CDS 40.0%
CCATCACCAAACATCACATA+AGG - chr2_2:9319613-9319632 None:intergenic 40.0%
! CCTTATGTGATGTTTGGTGA+TGG + chr2_2:9319610-9319629 Msa0236350:CDS 40.0%
! ATTTTACCTATTGGAGGACC+AGG + chr2_2:9319721-9319740 Msa0236350:CDS 40.0%
! TTTTACCTATTGGAGGACCA+GGG + chr2_2:9319722-9319741 Msa0236350:CDS 40.0%
!! CATTGACTCCATTGGAACAA+GGG + chr2_2:9319749-9319768 Msa0236350:CDS 40.0%
! ATTGACTCCATTGGAACAAG+GGG + chr2_2:9319750-9319769 Msa0236350:CDS 40.0%
GCTGCTGAGTTTGGAAAAAT+TGG + chr2_2:9319892-9319911 Msa0236350:CDS 40.0%
AACGTATCATTCCCATAGCT+CGG - chr2_2:9319988-9320007 None:intergenic 40.0%
!!! ATTTTTTTGCTAGGGTGCTC+AGG + chr2_2:9320013-9320032 Msa0236350:CDS 40.0%
!!! TTTTTTTGCTAGGGTGCTCA+GGG + chr2_2:9320014-9320033 Msa0236350:CDS 40.0%
AGAAATTGAAGGAGAGGGTT+TGG - chr2_2:9318898-9318917 None:intergenic 40.0%
GTGAAGAGAAATTGAAGGAG+AGG - chr2_2:9318904-9318923 None:intergenic 40.0%
AGGGTGTGAAGAGAAATTGA+AGG - chr2_2:9318909-9318928 None:intergenic 40.0%
! TCTTGGTAGTAGGTTCAACT+GGG + chr2_2:9319083-9319102 Msa0236350:CDS 40.0%
GTAGGTTCAACTGGGTATAT+AGG + chr2_2:9319091-9319110 Msa0236350:CDS 40.0%
GCAATAGCTAGAGAAAAGAG+TGG + chr2_2:9319160-9319179 Msa0236350:CDS 40.0%
GATGAGGATTTGAAGAACCT+AGG + chr2_2:9319274-9319293 Msa0236350:CDS 40.0%
GATTTGAAGAACCTAGGTGT+TGG + chr2_2:9319280-9319299 Msa0236350:CDS 40.0%
CAACATCAAAACCAACACCT+AGG - chr2_2:9319294-9319313 None:intergenic 40.0%
TGTCTTGCTAGTAGAAATGG+AGG + chr2_2:9319322-9319341 Msa0236350:CDS 40.0%
GTCTTGCTAGTAGAAATGGA+GGG + chr2_2:9319323-9319342 Msa0236350:CDS 40.0%
TCTTGCTAGTAGAAATGGAG+GGG + chr2_2:9319324-9319343 Msa0236350:CDS 40.0%
TAGTAGAAATGGAGGGGTTA+AGG + chr2_2:9319330-9319349 Msa0236350:CDS 40.0%
!! CTTTTAGCTGGTAGGAAACT+TGG + chr2_2:9319391-9319410 Msa0236350:CDS 40.0%
CCATCACCAAACATCACATA+AGG - chr2_2:9319613-9319632 None:intergenic 40.0%
! CCTTATGTGATGTTTGGTGA+TGG + chr2_2:9319610-9319629 Msa0236350:CDS 40.0%
! ATTTTACCTATTGGAGGACC+AGG + chr2_2:9319721-9319740 Msa0236350:CDS 40.0%
! TTTTACCTATTGGAGGACCA+GGG + chr2_2:9319722-9319741 Msa0236350:CDS 40.0%
!! CATTGACTCCATTGGAACAA+GGG + chr2_2:9319749-9319768 Msa0236350:CDS 40.0%
! ATTGACTCCATTGGAACAAG+GGG + chr2_2:9319750-9319769 Msa0236350:CDS 40.0%
GCTGCTGAGTTTGGAAAAAT+TGG + chr2_2:9319892-9319911 Msa0236350:CDS 40.0%
AACGTATCATTCCCATAGCT+CGG - chr2_2:9319988-9320007 None:intergenic 40.0%
!!! ATTTTTTTGCTAGGGTGCTC+AGG + chr2_2:9320013-9320032 Msa0236350:CDS 40.0%
!!! TTTTTTTGCTAGGGTGCTCA+GGG + chr2_2:9320014-9320033 Msa0236350:CDS 40.0%
!! AGGGTTTGGTGTTTGAGTGA+GGG - chr2_2:9318884-9318903 None:intergenic 45.0%
!! GGTTGATGAAGTGAGAAGGA+GGG - chr2_2:9318928-9318947 None:intergenic 45.0%
!! AGGTTGATGAAGTGAGAAGG+AGG - chr2_2:9318929-9318948 None:intergenic 45.0%
! GTCTTGGTAGTAGGTTCAAC+TGG + chr2_2:9319082-9319101 Msa0236350:CDS 45.0%
ATGGAGGGGTTAAGGATTCA+TGG + chr2_2:9319338-9319357 Msa0236350:CDS 45.0%
!! GCTTGAGGATGAGTTGGTAA+AGG + chr2_2:9319489-9319508 Msa0236350:CDS 45.0%
!! GGATGAGTTGGTAAAGGAAG+CGG + chr2_2:9319495-9319514 Msa0236350:CDS 45.0%
AGGAAGCGGAGAAAGATGAT+AGG + chr2_2:9319509-9319528 Msa0236350:CDS 45.0%
! GGGAAGCCTTATGTGATGTT+TGG + chr2_2:9319604-9319623 Msa0236350:CDS 45.0%
!! GCATTGACTCCATTGGAACA+AGG + chr2_2:9319748-9319767 Msa0236350:CDS 45.0%
TCAGCAGCATCTTCCAATGA+AGG - chr2_2:9319880-9319899 None:intergenic 45.0%
TTGGAAGATGCTGCTGAGTT+TGG + chr2_2:9319883-9319902 Msa0236350:CDS 45.0%
GAGCTATGGGAATGATACGT+TGG + chr2_2:9319987-9320006 Msa0236350:CDS 45.0%
!! AGGGTTTGGTGTTTGAGTGA+GGG - chr2_2:9318884-9318903 None:intergenic 45.0%
!! GGTTGATGAAGTGAGAAGGA+GGG - chr2_2:9318928-9318947 None:intergenic 45.0%
!! AGGTTGATGAAGTGAGAAGG+AGG - chr2_2:9318929-9318948 None:intergenic 45.0%
! GTCTTGGTAGTAGGTTCAAC+TGG + chr2_2:9319082-9319101 Msa0236350:CDS 45.0%
ATGGAGGGGTTAAGGATTCA+TGG + chr2_2:9319338-9319357 Msa0236350:CDS 45.0%
!! GCTTGAGGATGAGTTGGTAA+AGG + chr2_2:9319489-9319508 Msa0236350:CDS 45.0%
!! GGATGAGTTGGTAAAGGAAG+CGG + chr2_2:9319495-9319514 Msa0236350:CDS 45.0%
AGGAAGCGGAGAAAGATGAT+AGG + chr2_2:9319509-9319528 Msa0236350:CDS 45.0%
! GGGAAGCCTTATGTGATGTT+TGG + chr2_2:9319604-9319623 Msa0236350:CDS 45.0%
!! GCATTGACTCCATTGGAACA+AGG + chr2_2:9319748-9319767 Msa0236350:CDS 45.0%
TCAGCAGCATCTTCCAATGA+AGG - chr2_2:9319880-9319899 None:intergenic 45.0%
TTGGAAGATGCTGCTGAGTT+TGG + chr2_2:9319883-9319902 Msa0236350:CDS 45.0%
GAGCTATGGGAATGATACGT+TGG + chr2_2:9319987-9320006 Msa0236350:CDS 45.0%
! TGAGGGGTGTGTGATGAAAG+TGG - chr2_2:9318867-9318886 None:intergenic 50.0%
!! GGGTTTGGTGTTTGAGTGAG+GGG - chr2_2:9318883-9318902 None:intergenic 50.0%
!! GAGGGTTTGGTGTTTGAGTG+AGG - chr2_2:9318885-9318904 None:intergenic 50.0%
GCTGAAGCTTGAGGATGAGT+TGG + chr2_2:9319483-9319502 Msa0236350:CDS 50.0%
AATGGAGTCAATGCCTTCCC+TGG - chr2_2:9319742-9319761 None:intergenic 50.0%
!! AGGGAAGGCATTGACTCCAT+TGG + chr2_2:9319741-9319760 Msa0236350:CDS 50.0%
ATGAGAAGACGCCGAGCTAT+GGG + chr2_2:9319974-9319993 Msa0236350:CDS 50.0%
! TGAGGGGTGTGTGATGAAAG+TGG - chr2_2:9318867-9318886 None:intergenic 50.0%
!! GGGTTTGGTGTTTGAGTGAG+GGG - chr2_2:9318883-9318902 None:intergenic 50.0%
!! GAGGGTTTGGTGTTTGAGTG+AGG - chr2_2:9318885-9318904 None:intergenic 50.0%
GCTGAAGCTTGAGGATGAGT+TGG + chr2_2:9319483-9319502 Msa0236350:CDS 50.0%
AATGGAGTCAATGCCTTCCC+TGG - chr2_2:9319742-9319761 None:intergenic 50.0%
!! AGGGAAGGCATTGACTCCAT+TGG + chr2_2:9319741-9319760 Msa0236350:CDS 50.0%
ATGAGAAGACGCCGAGCTAT+GGG + chr2_2:9319974-9319993 Msa0236350:CDS 50.0%
GCACGCTGAAACTCGAGAAG+AGG - chr2_2:9319460-9319479 None:intergenic 55.0%
ACCTATTGGAGGACCAGGGA+AGG + chr2_2:9319726-9319745 Msa0236350:CDS 55.0%
TCGCTGTACTCGCCAGTATC+AGG - chr2_2:9319955-9319974 None:intergenic 55.0%
GATGAGAAGACGCCGAGCTA+TGG + chr2_2:9319973-9319992 Msa0236350:CDS 55.0%
! TTTGCTAGGGTGCTCAGGGA+AGG + chr2_2:9320018-9320037 Msa0236350:CDS 55.0%
! TTGCTAGGGTGCTCAGGGAA+GGG + chr2_2:9320019-9320038 Msa0236350:CDS 55.0%
GCACGCTGAAACTCGAGAAG+AGG - chr2_2:9319460-9319479 None:intergenic 55.0%
ACCTATTGGAGGACCAGGGA+AGG + chr2_2:9319726-9319745 Msa0236350:CDS 55.0%
TCGCTGTACTCGCCAGTATC+AGG - chr2_2:9319955-9319974 None:intergenic 55.0%
GATGAGAAGACGCCGAGCTA+TGG + chr2_2:9319973-9319992 Msa0236350:CDS 55.0%
! TTTGCTAGGGTGCTCAGGGA+AGG + chr2_2:9320018-9320037 Msa0236350:CDS 55.0%
! TTGCTAGGGTGCTCAGGGAA+GGG + chr2_2:9320019-9320038 Msa0236350:CDS 55.0%
GCGTGCGAAGCTGAAGCTTG+AGG + chr2_2:9319474-9319493 Msa0236350:CDS 60.0%
GCCTTCCCTGGTCCTCCAAT+AGG - chr2_2:9319730-9319749 None:intergenic 60.0%
! TAGGGTGCTCAGGGAAGGGA+TGG + chr2_2:9320023-9320042 Msa0236350:CDS 60.0%
! GGGATGGCTGGTCAAGAGCT+AGG + chr2_2:9320039-9320058 Msa0236350:CDS 60.0%
GCGTGCGAAGCTGAAGCTTG+AGG + chr2_2:9319474-9319493 Msa0236350:CDS 60.0%
GCCTTCCCTGGTCCTCCAAT+AGG - chr2_2:9319730-9319749 None:intergenic 60.0%
! TAGGGTGCTCAGGGAAGGGA+TGG + chr2_2:9320023-9320042 Msa0236350:CDS 60.0%
! GGGATGGCTGGTCAAGAGCT+AGG + chr2_2:9320039-9320058 Msa0236350:CDS 60.0%
GTGCTCAGGGAAGGGATGGC+TGG + chr2_2:9320027-9320046 Msa0236350:CDS 65.0%
GTGCTCAGGGAAGGGATGGC+TGG + chr2_2:9320027-9320046 Msa0236350:CDS 65.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 9318845 9320080 9318845 ID=Msa0236350;Name=Msa0236350
chr2_2 mRNA 9318845 9320080 9318845 ID=Msa0236350-mRNA-1;Parent=Msa0236350;Name=Msa0236350-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|411
chr2_2 exon 9318845 9320080 9318845 ID=Msa0236350-mRNA-1:exon:4017;Parent=Msa0236350-mRNA-1
chr2_2 CDS 9318845 9320080 9318845 ID=Msa0236350-mRNA-1:cds;Parent=Msa0236350-mRNA-1
Gene Sequence

>Msa0236350

ATGTCCCTGTGTTATTCTTCCACTTTCATCACACACCCCTCACTCAAACACCAAACCCTCTCCTTCAATTTCTCTTCACACCCTCCTTCTCACTTCATCAACCTATTCAAGGTAAAATCACACAGACCCATTAAGTATAACAAACAAAAATTGAAACTTTATGCATCCCTTTCACAATCTGAACAAGTTGAAACGACCCCATCAACATTTAGAAGCAAGAATCCAAAAGATGTTAATGTCTTGGTAGTAGGTTCAACTGGGTATATAGGAAAATTTGTAGTGAAAGAGTTGATTCAAAGAGGGTTTAATGTTACTGCAATAGCTAGAGAAAAGAGTGGAATAAAGGGTAGCATTGATAAAGAAACAACATTGAATGAGTTAAAAGGTGCTAATGTGTGTTTCTCTGATGTGACAAATTTGGATGTTTTTGATGAGGATTTGAAGAACCTAGGTGTTGGTTTTGATGTTGTTGTGTCTTGTCTTGCTAGTAGAAATGGAGGGGTTAAGGATTCATGGAAGATTGATTATGAAGCTACTAAGAATAGTCTTTTAGCTGGTAGGAAACTTGGTGCTTCTCATTTTGTATTGCTTTCGGCAATTTGTGTTCAGAAGCCTCTTCTCGAGTTTCAGCGTGCGAAGCTGAAGCTTGAGGATGAGTTGGTAAAGGAAGCGGAGAAAGATGATAGGTTTAGTTATAGTATAGTGAGGCCGACCGCGTTTTTTAAGAGTTTAGGTGGTCAAGTTGATTTGGTGAAAGATGGGAAGCCTTATGTGATGTTTGGTGATGGAAAGTTGTGTGCTTGTAAACCTATAAGTGAACAAGATTTGGCTTCTTTTATTGTTGATTGTGTAATGAGTGAGGATAAAATTAACAAGATTTTACCTATTGGAGGACCAGGGAAGGCATTGACTCCATTGGAACAAGGGGAAATTTTGTTTAAGCTTTTAGGGAAGGAGCCTAAGTTCTTGAAAGTTCCAATAGGGATTATGGATTTTGCTATTGGTGTTCTTGACAATTTGGTTAAGGTATTTCCTTCATTGGAAGATGCTGCTGAGTTTGGAAAAATTGGAAGGTACTATGCGGCTGAAAGTATGTTGATTTTGGATCCTGATACTGGCGAGTACAGCGATGAGAAGACGCCGAGCTATGGGAATGATACGTTGGAAGATTTTTTTGCTAGGGTGCTCAGGGAAGGGATGGCTGGTCAAGAGCTAGGTGAGCAAACAATATTTTAA

Protein sequence

>Msa0236350

MSLCYSSTFITHPSLKHQTLSFNFSSHPPSHFINLFKVKSHRPIKYNKQKLKLYASLSQSEQVETTPSTFRSKNPKDVNVLVVGSTGYIGKFVVKELIQRGFNVTAIAREKSGIKGSIDKETTLNELKGANVCFSDVTNLDVFDEDLKNLGVGFDVVVSCLASRNGGVKDSWKIDYEATKNSLLAGRKLGASHFVLLSAICVQKPLLEFQRAKLKLEDELVKEAEKDDRFSYSIVRPTAFFKSLGGQVDLVKDGKPYVMFGDGKLCACKPISEQDLASFIVDCVMSEDKINKILPIGGPGKALTPLEQGEILFKLLGKEPKFLKVPIGIMDFAIGVLDNLVKVFPSLEDAAEFGKIGRYYAAESMLILDPDTGEYSDEKTPSYGNDTLEDFFARVLREGMAGQELGEQTIF*