AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1455120


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1455120 MtrunA17_Chr2g0286401 98.058 412 7 1 1 411 40 451 0.0 823
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1455120 AT5G18660.1 71.327 422 100 5 1 408 1 415 0.0 600

Find 87 sgRNAs with CRISPR-Local

Find 230 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCAAATCTTGTTCACTTAT+AGG 0.199757 tig0035587:+22599 Msa1455120:intergenic
ACCAAGACATTAACATCTTT+TGG 0.207193 tig0035587:+23184 Msa1455120:intergenic
GAAAGTTCCAATAGGGATTA+TGG 0.213230 tig0035587:-22438 Msa1455120:CDS
TTTCTCTGATGTGACAAATT+TGG 0.231196 tig0035587:-23008 Msa1455120:CDS
TAGAGAAAAGAGTGGAATAA+AGG 0.258502 tig0035587:-23083 Msa1455120:CDS
GGCTGAAAGTATGTTGATTT+TGG 0.261140 tig0035587:-22324 Msa1455120:CDS
TCGCTGTACTCGCCGGTATC+AGG 0.263661 tig0035587:+22299 Msa1455120:intergenic
TATTGGTGTTCTTGACAATT+TGG 0.267908 tig0035587:-22408 Msa1455120:CDS
GTCTTGGTAGTAGGTTCAAC+TGG 0.297195 tig0035587:-23169 Msa1455120:CDS
ACCTATAAGTGAACAAGATT+TGG 0.307663 tig0035587:-22600 Msa1455120:CDS
TTGGAAGATGCTGCTGAGTT+TGG 0.326591 tig0035587:-22368 Msa1455120:CDS
ACAACATTGAATGAGTTAAA+AGG 0.336207 tig0035587:-23043 Msa1455120:CDS
TTCTTGCTTCTAAATGTTGA+TGG 0.349443 tig0035587:+23208 Msa1455120:intergenic
GCAAAATCCATAATCCCTAT+TGG 0.356770 tig0035587:+22431 Msa1455120:intergenic
TTTAGGTGGTCAAGTTGATT+TGG 0.358962 tig0035587:-22678 Msa1455120:CDS
GAGGGTTTGGTGTTTGAGTG+AGG 0.371768 tig0035587:+23369 Msa1455120:intergenic
ATGGAGGGGTTAAGGATTCA+TGG 0.373729 tig0035587:-22913 Msa1455120:CDS
GGTTAAGGTATTTCCTTCAT+TGG 0.375273 tig0035587:-22387 Msa1455120:CDS
TAGTAGAAATGGAGGGGTTA+AGG 0.375942 tig0035587:-22921 Msa1455120:CDS
AGAAATTGAAGGAGAGGGTT+TGG 0.390580 tig0035587:+23356 Msa1455120:intergenic
TGTTCTTGACAATTTGGTTA+AGG 0.399383 tig0035587:-22402 Msa1455120:CDS
AGGGTTTGGTGTTTGAGTGA+GGG 0.399831 tig0035587:+23370 Msa1455120:intergenic
AGTTCTTGAAAGTTCCAATA+GGG 0.404401 tig0035587:-22445 Msa1455120:CDS
TCTTGTCTTGCTAGTAGAAA+TGG 0.408504 tig0035587:-22932 Msa1455120:CDS
AGAGAAAAGAGTGGAATAAA+GGG 0.408945 tig0035587:-23082 Msa1455120:CDS
GTAGGTTCAACTGGGTATAT+AGG 0.410679 tig0035587:-23160 Msa1455120:CDS
TCTTGCTTCTAAATGTTGAT+GGG 0.421309 tig0035587:+23209 Msa1455120:intergenic
TCACTTCATCAACCTATTCA+AGG 0.430086 tig0035587:-23317 Msa1455120:CDS
AAGTTCTTGAAAGTTCCAAT+AGG 0.430764 tig0035587:-22446 Msa1455120:CDS
GTGAAAGAGTTGATTCAAAG+AGG 0.433123 tig0035587:-23127 Msa1455120:CDS
CAACTTGTTCAGATTGTGAA+AGG 0.441779 tig0035587:+23239 Msa1455120:intergenic
TCCAAAAGATGTTAATGTCT+TGG 0.443326 tig0035587:-23185 Msa1455120:CDS
GATGTTAATGTCTTGGTAGT+AGG 0.450407 tig0035587:-23178 Msa1455120:CDS
GGGTTTGGTGTTTGAGTGAG+GGG 0.452202 tig0035587:+23371 Msa1455120:intergenic
CAAGTTGATTTGGTGAAAGA+TGG 0.452904 tig0035587:-22668 Msa1455120:CDS
GTGCTCAGGGAAGGGATGGC+TGG 0.454004 tig0035587:-22224 Msa1455120:CDS
AAAATTTCCCCTTGTTCCAA+TGG 0.458224 tig0035587:+22494 Msa1455120:intergenic
AATGGAGTCAATGCCTTCCC+TGG 0.459081 tig0035587:+22512 Msa1455120:intergenic
GCCTTCCCTGGTCCTCCAAT+AGG 0.460882 tig0035587:+22524 Msa1455120:intergenic
CCATCACCAAACATCACATA+AGG 0.461120 tig0035587:+22641 Msa1455120:intergenic
TTTGCTAGGGTGCTCAGGGA+AGG 0.472138 tig0035587:-22233 Msa1455120:CDS
GTGAAGAGAAATTGAAGGAG+AGG 0.474439 tig0035587:+23350 Msa1455120:intergenic
AGGTTGATGAAGTGAGAAGG+AGG 0.475446 tig0035587:+23325 Msa1455120:intergenic
TTGCTAGGGTGCTCAGGGAA+GGG 0.475808 tig0035587:-22232 Msa1455120:CDS
GGATGAGTTGGTAAAGGAAG+CGG 0.485061 tig0035587:-22756 Msa1455120:CDS
GGGAAGCCTTATGTGATGTT+TGG 0.486837 tig0035587:-22647 Msa1455120:CDS
TGAAAGAGTTGATTCAAAGA+GGG 0.488936 tig0035587:-23126 Msa1455120:CDS
GATGAGAAGACGCCGAGCTA+TGG 0.490154 tig0035587:-22278 Msa1455120:CDS
AGGAAGCGGAGAAAGATGAT+AGG 0.500448 tig0035587:-22742 Msa1455120:CDS
TAGGGTGCTCAGGGAAGGGA+TGG 0.504745 tig0035587:-22228 Msa1455120:CDS
AAGTTGATTTGGTGAAAGAT+GGG 0.505222 tig0035587:-22667 Msa1455120:CDS
ATGAGAAGACGCCGAGCTAT+GGG 0.509494 tig0035587:-22277 Msa1455120:CDS
AGGGAAGGCATTGACTCCAT+TGG 0.512516 tig0035587:-22510 Msa1455120:CDS
AACTTGTTCAGATTGTGAAA+GGG 0.521535 tig0035587:+23240 Msa1455120:intergenic
GCTTGAGGATGAGTTGGTAA+AGG 0.525596 tig0035587:-22762 Msa1455120:CDS
TCAGCAGCATCTTCCAATGA+AGG 0.532717 tig0035587:+22374 Msa1455120:intergenic
TGAGGGGTGTGTGATGAAAG+TGG 0.534640 tig0035587:+23387 Msa1455120:intergenic
CTTCTCATCGCTGTACTCGC+CGG 0.535456 tig0035587:+22292 Msa1455120:intergenic
ATTGGAACTTTCAAGAACTT+AGG 0.538881 tig0035587:+22449 Msa1455120:intergenic
CTTGCTTCTAAATGTTGATG+GGG 0.544812 tig0035587:+23210 Msa1455120:intergenic
AGGGTGTGAAGAGAAATTGA+AGG 0.545623 tig0035587:+23345 Msa1455120:intergenic
AATAGGTTGATGAAGTGAGA+AGG 0.547274 tig0035587:+23322 Msa1455120:intergenic
TGAAGAGAAATTGAAGGAGA+GGG 0.547534 tig0035587:+23351 Msa1455120:intergenic
GCACGCTGAAACTCGAGAAG+AGG 0.548329 tig0035587:+22794 Msa1455120:intergenic
GGGATGGCTGGTCAAGAGCT+AGG 0.549334 tig0035587:-22212 Msa1455120:CDS
ACCTATTGGAGGACCAGGGA+AGG 0.552480 tig0035587:-22525 Msa1455120:CDS
GCGTGCGAAGCTGAAGCTTG+AGG 0.553193 tig0035587:-22777 Msa1455120:CDS
GCTGAAGCTTGAGGATGAGT+TGG 0.553213 tig0035587:-22768 Msa1455120:CDS
AACGTATCATTCCCATAGCT+CGG 0.554956 tig0035587:+22266 Msa1455120:intergenic
GATTTGAAGAACCTAGGTGT+TGG 0.562927 tig0035587:-22971 Msa1455120:CDS
CCTTATGTGATGTTTGGTGA+TGG 0.564492 tig0035587:-22641 Msa1455120:CDS
GGTTGATGAAGTGAGAAGGA+GGG 0.571070 tig0035587:+23326 Msa1455120:intergenic
GCATTGACTCCATTGGAACA+AGG 0.574091 tig0035587:-22503 Msa1455120:CDS
GATGAGGATTTGAAGAACCT+AGG 0.591299 tig0035587:-22977 Msa1455120:CDS
TCTTGCTAGTAGAAATGGAG+GGG 0.600302 tig0035587:-22927 Msa1455120:CDS
CATTGACTCCATTGGAACAA+GGG 0.600349 tig0035587:-22502 Msa1455120:CDS
GAGCTATGGGAATGATACGT+TGG 0.608370 tig0035587:-22264 Msa1455120:CDS
TGTTGATTGTGTAATGAGTG+AGG 0.616265 tig0035587:-22567 Msa1455120:CDS
ATTGACTCCATTGGAACAAG+GGG 0.618767 tig0035587:-22501 Msa1455120:CDS
GTCTTGCTAGTAGAAATGGA+GGG 0.622888 tig0035587:-22928 Msa1455120:CDS
TGTCTTGCTAGTAGAAATGG+AGG 0.623450 tig0035587:-22929 Msa1455120:CDS
GGTTTAGTTATAGTATAGTG+AGG 0.643964 tig0035587:-22721 Msa1455120:CDS
GCAATAGCTAGAGAAAAGAG+TGG 0.645121 tig0035587:-23091 Msa1455120:CDS
TGAAAGTGGAAGAATAACAC+AGG 0.652551 tig0035587:+23401 Msa1455120:intergenic
CAACATCAAAACCAACACCT+AGG 0.664857 tig0035587:+22960 Msa1455120:intergenic
TCTTGGTAGTAGGTTCAACT+GGG 0.681666 tig0035587:-23168 Msa1455120:CDS
GAAAGTGGAAGAATAACACA+GGG 0.724228 tig0035587:+23402 Msa1455110:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTGTTTGTTATACTTAAT+GGG + tig0035587:22322-22341 Msa1455120:intergenic 15.0%
!!! TTTTTGTTTGTTATACTTAA+TGG + tig0035587:22323-22342 Msa1455120:intergenic 15.0%
!!! AAATTTTGTTTAAGCTTTTA+GGG - tig0035587:23121-23140 Msa1455120:CDS 15.0%
!!! TTTTGTTTGTTATACTTAAT+GGG + tig0035587:22322-22341 Msa1455120:intergenic 15.0%
!!! TTTTTGTTTGTTATACTTAA+TGG + tig0035587:22323-22342 Msa1455120:intergenic 15.0%
!!! AAATTTTGTTTAAGCTTTTA+GGG - tig0035587:23121-23140 Msa1455120:CDS 15.0%
!!! ATTAACAAGATTTTACCTAT+TGG - tig0035587:23060-23079 Msa1455120:CDS 20.0%
!!! GAAATTTTGTTTAAGCTTTT+AGG - tig0035587:23120-23139 Msa1455120:CDS 20.0%
!!! ATTAACAAGATTTTACCTAT+TGG - tig0035587:23060-23079 Msa1455120:CDS 20.0%
!!! GAAATTTTGTTTAAGCTTTT+AGG - tig0035587:23120-23139 Msa1455120:CDS 20.0%
! ACAACATTGAATGAGTTAAA+AGG - tig0035587:22556-22575 Msa1455120:CDS 25.0%
!!! AAATTTGGATGTTTTTGATG+AGG - tig0035587:22606-22625 Msa1455120:CDS 25.0%
!! TTCTCATTTTGTATTGCTTT+CGG - tig0035587:22765-22784 Msa1455120:CDS 25.0%
! ACAACATTGAATGAGTTAAA+AGG - tig0035587:22556-22575 Msa1455120:CDS 25.0%
!!! AAATTTGGATGTTTTTGATG+AGG - tig0035587:22606-22625 Msa1455120:CDS 25.0%
!! TTCTCATTTTGTATTGCTTT+CGG - tig0035587:22765-22784 Msa1455120:CDS 25.0%
! TGTGTGATTTTACCTTGAAT+AGG + tig0035587:22297-22316 Msa1455120:intergenic 30.0%
! AACTTGTTCAGATTGTGAAA+GGG + tig0035587:22362-22381 Msa1455120:intergenic 30.0%
TCTTGCTTCTAAATGTTGAT+GGG + tig0035587:22393-22412 Msa1455120:intergenic 30.0%
TTCTTGCTTCTAAATGTTGA+TGG + tig0035587:22394-22413 Msa1455120:intergenic 30.0%
TCCAAAAGATGTTAATGTCT+TGG - tig0035587:22414-22433 Msa1455120:CDS 30.0%
! ACCAAGACATTAACATCTTT+TGG + tig0035587:22418-22437 Msa1455120:intergenic 30.0%
! TGAAAGAGTTGATTCAAAGA+GGG - tig0035587:22473-22492 Msa1455120:CDS 30.0%
TAGAGAAAAGAGTGGAATAA+AGG - tig0035587:22516-22535 Msa1455120:CDS 30.0%
AGAGAAAAGAGTGGAATAAA+GGG - tig0035587:22517-22536 Msa1455120:CDS 30.0%
TTTCTCTGATGTGACAAATT+TGG - tig0035587:22591-22610 Msa1455120:CDS 30.0%
! ACTAAGAATAGTCTTTTAGC+TGG - tig0035587:22727-22746 Msa1455120:CDS 30.0%
GGTTTAGTTATAGTATAGTG+AGG - tig0035587:22878-22897 Msa1455120:CDS 30.0%
ACCTAAACTCTTAAAAAACG+CGG + tig0035587:22908-22927 Msa1455120:intergenic 30.0%
!! AAGTTGATTTGGTGAAAGAT+GGG - tig0035587:22932-22951 Msa1455120:CDS 30.0%
ACCTATAAGTGAACAAGATT+TGG - tig0035587:22999-23018 Msa1455120:CDS 30.0%
! AACAAGATTTTACCTATTGG+AGG - tig0035587:23063-23082 Msa1455120:CDS 30.0%
!! TTTGTTTAAGCTTTTAGGGA+AGG - tig0035587:23125-23144 Msa1455120:CDS 30.0%
ATTGGAACTTTCAAGAACTT+AGG + tig0035587:23153-23172 Msa1455120:intergenic 30.0%
AAGTTCTTGAAAGTTCCAAT+AGG - tig0035587:23153-23172 Msa1455120:CDS 30.0%
AGTTCTTGAAAGTTCCAATA+GGG - tig0035587:23154-23173 Msa1455120:CDS 30.0%
! TATTGGTGTTCTTGACAATT+TGG - tig0035587:23191-23210 Msa1455120:CDS 30.0%
TGTTCTTGACAATTTGGTTA+AGG - tig0035587:23197-23216 Msa1455120:CDS 30.0%
!! AAAAATTGGAAGGTACTATG+CGG - tig0035587:23254-23273 Msa1455120:CDS 30.0%
!!! GTTGGAAGATTTTTTTGCTA+GGG - tig0035587:23353-23372 Msa1455120:CDS 30.0%
! TGTGTGATTTTACCTTGAAT+AGG + tig0035587:22297-22316 Msa1455120:intergenic 30.0%
! AACTTGTTCAGATTGTGAAA+GGG + tig0035587:22362-22381 Msa1455120:intergenic 30.0%
TCTTGCTTCTAAATGTTGAT+GGG + tig0035587:22393-22412 Msa1455120:intergenic 30.0%
TTCTTGCTTCTAAATGTTGA+TGG + tig0035587:22394-22413 Msa1455120:intergenic 30.0%
TCCAAAAGATGTTAATGTCT+TGG - tig0035587:22414-22433 Msa1455120:CDS 30.0%
! ACCAAGACATTAACATCTTT+TGG + tig0035587:22418-22437 Msa1455120:intergenic 30.0%
! TGAAAGAGTTGATTCAAAGA+GGG - tig0035587:22473-22492 Msa1455120:CDS 30.0%
TAGAGAAAAGAGTGGAATAA+AGG - tig0035587:22516-22535 Msa1455120:CDS 30.0%
AGAGAAAAGAGTGGAATAAA+GGG - tig0035587:22517-22536 Msa1455120:CDS 30.0%
TTTCTCTGATGTGACAAATT+TGG - tig0035587:22591-22610 Msa1455120:CDS 30.0%
! ACTAAGAATAGTCTTTTAGC+TGG - tig0035587:22727-22746 Msa1455120:CDS 30.0%
GGTTTAGTTATAGTATAGTG+AGG - tig0035587:22878-22897 Msa1455120:CDS 30.0%
ACCTAAACTCTTAAAAAACG+CGG + tig0035587:22908-22927 Msa1455120:intergenic 30.0%
!! AAGTTGATTTGGTGAAAGAT+GGG - tig0035587:22932-22951 Msa1455120:CDS 30.0%
ACCTATAAGTGAACAAGATT+TGG - tig0035587:22999-23018 Msa1455120:CDS 30.0%
! AACAAGATTTTACCTATTGG+AGG - tig0035587:23063-23082 Msa1455120:CDS 30.0%
!! TTTGTTTAAGCTTTTAGGGA+AGG - tig0035587:23125-23144 Msa1455120:CDS 30.0%
ATTGGAACTTTCAAGAACTT+AGG + tig0035587:23153-23172 Msa1455120:intergenic 30.0%
AAGTTCTTGAAAGTTCCAAT+AGG - tig0035587:23153-23172 Msa1455120:CDS 30.0%
AGTTCTTGAAAGTTCCAATA+GGG - tig0035587:23154-23173 Msa1455120:CDS 30.0%
! TATTGGTGTTCTTGACAATT+TGG - tig0035587:23191-23210 Msa1455120:CDS 30.0%
TGTTCTTGACAATTTGGTTA+AGG - tig0035587:23197-23216 Msa1455120:CDS 30.0%
!! AAAAATTGGAAGGTACTATG+CGG - tig0035587:23254-23273 Msa1455120:CDS 30.0%
!!! GTTGGAAGATTTTTTTGCTA+GGG - tig0035587:23353-23372 Msa1455120:CDS 30.0%
GAAAGTGGAAGAATAACACA+GGG + tig0035587:22200-22219 None:intergenic 35.0%
TGAAAGTGGAAGAATAACAC+AGG + tig0035587:22201-22220 None:intergenic 35.0%
TGAAGAGAAATTGAAGGAGA+GGG + tig0035587:22251-22270 None:intergenic 35.0%
!! AATAGGTTGATGAAGTGAGA+AGG + tig0035587:22280-22299 None:intergenic 35.0%
TCACTTCATCAACCTATTCA+AGG - tig0035587:22282-22301 Msa1455120:CDS 35.0%
! CAACTTGTTCAGATTGTGAA+AGG + tig0035587:22363-22382 Msa1455120:intergenic 35.0%
CTTGCTTCTAAATGTTGATG+GGG + tig0035587:22392-22411 Msa1455120:intergenic 35.0%
! GATGTTAATGTCTTGGTAGT+AGG - tig0035587:22421-22440 Msa1455120:CDS 35.0%
! GTGAAAGAGTTGATTCAAAG+AGG - tig0035587:22472-22491 Msa1455120:CDS 35.0%
TCTTGTCTTGCTAGTAGAAA+TGG - tig0035587:22667-22686 Msa1455120:CDS 35.0%
!! AGAATAGTCTTTTAGCTGGT+AGG - tig0035587:22731-22750 Msa1455120:CDS 35.0%
AAACTCTTAAAAAACGCGGT+CGG + tig0035587:22904-22923 Msa1455120:intergenic 35.0%
!!! ACCGCGTTTTTTAAGAGTTT+AGG - tig0035587:22904-22923 Msa1455120:CDS 35.0%
!!! GCGTTTTTTAAGAGTTTAGG+TGG - tig0035587:22907-22926 Msa1455120:CDS 35.0%
!! TTTAGGTGGTCAAGTTGATT+TGG - tig0035587:22921-22940 Msa1455120:CDS 35.0%
!! CAAGTTGATTTGGTGAAAGA+TGG - tig0035587:22931-22950 Msa1455120:CDS 35.0%
GCCAAATCTTGTTCACTTAT+AGG + tig0035587:23003-23022 Msa1455120:intergenic 35.0%
! TGTTGATTGTGTAATGAGTG+AGG - tig0035587:23032-23051 Msa1455120:CDS 35.0%
AAAATTTCCCCTTGTTCCAA+TGG + tig0035587:23108-23127 Msa1455120:intergenic 35.0%
GAAAGTTCCAATAGGGATTA+TGG - tig0035587:23161-23180 Msa1455120:CDS 35.0%
GCAAAATCCATAATCCCTAT+TGG + tig0035587:23171-23190 Msa1455120:intergenic 35.0%
!! GGGATTATGGATTTTGCTAT+TGG - tig0035587:23174-23193 Msa1455120:CDS 35.0%
! GGTTAAGGTATTTCCTTCAT+TGG - tig0035587:23212-23231 Msa1455120:CDS 35.0%
CTGAGTTTGGAAAAATTGGA+AGG - tig0035587:23244-23263 Msa1455120:CDS 35.0%
!!! GGCTGAAAGTATGTTGATTT+TGG - tig0035587:23275-23294 Msa1455120:CDS 35.0%
! TTGATTTTGGATCCTGATAC+CGG - tig0035587:23288-23307 Msa1455120:CDS 35.0%
!!! CGTTGGAAGATTTTTTTGCT+AGG - tig0035587:23352-23371 Msa1455120:CDS 35.0%
GAAAGTGGAAGAATAACACA+GGG + tig0035587:22200-22219 Msa1455120:intergenic 35.0%
TGAAAGTGGAAGAATAACAC+AGG + tig0035587:22201-22220 Msa1455120:intergenic 35.0%
TGAAGAGAAATTGAAGGAGA+GGG + tig0035587:22251-22270 Msa1455120:intergenic 35.0%
!! AATAGGTTGATGAAGTGAGA+AGG + tig0035587:22280-22299 Msa1455120:intergenic 35.0%
TCACTTCATCAACCTATTCA+AGG - tig0035587:22282-22301 Msa1455120:CDS 35.0%
! CAACTTGTTCAGATTGTGAA+AGG + tig0035587:22363-22382 Msa1455120:intergenic 35.0%
CTTGCTTCTAAATGTTGATG+GGG + tig0035587:22392-22411 Msa1455120:intergenic 35.0%
! GATGTTAATGTCTTGGTAGT+AGG - tig0035587:22421-22440 Msa1455120:CDS 35.0%
! GTGAAAGAGTTGATTCAAAG+AGG - tig0035587:22472-22491 Msa1455120:CDS 35.0%
TCTTGTCTTGCTAGTAGAAA+TGG - tig0035587:22667-22686 Msa1455120:CDS 35.0%
!! AGAATAGTCTTTTAGCTGGT+AGG - tig0035587:22731-22750 Msa1455120:CDS 35.0%
AAACTCTTAAAAAACGCGGT+CGG + tig0035587:22904-22923 Msa1455120:intergenic 35.0%
!!! ACCGCGTTTTTTAAGAGTTT+AGG - tig0035587:22904-22923 Msa1455120:CDS 35.0%
!!! GCGTTTTTTAAGAGTTTAGG+TGG - tig0035587:22907-22926 Msa1455120:CDS 35.0%
!! TTTAGGTGGTCAAGTTGATT+TGG - tig0035587:22921-22940 Msa1455120:CDS 35.0%
!! CAAGTTGATTTGGTGAAAGA+TGG - tig0035587:22931-22950 Msa1455120:CDS 35.0%
GCCAAATCTTGTTCACTTAT+AGG + tig0035587:23003-23022 Msa1455120:intergenic 35.0%
! TGTTGATTGTGTAATGAGTG+AGG - tig0035587:23032-23051 Msa1455120:CDS 35.0%
AAAATTTCCCCTTGTTCCAA+TGG + tig0035587:23108-23127 Msa1455120:intergenic 35.0%
GAAAGTTCCAATAGGGATTA+TGG - tig0035587:23161-23180 Msa1455120:CDS 35.0%
GCAAAATCCATAATCCCTAT+TGG + tig0035587:23171-23190 Msa1455120:intergenic 35.0%
!! GGGATTATGGATTTTGCTAT+TGG - tig0035587:23174-23193 Msa1455120:CDS 35.0%
! GGTTAAGGTATTTCCTTCAT+TGG - tig0035587:23212-23231 Msa1455120:CDS 35.0%
CTGAGTTTGGAAAAATTGGA+AGG - tig0035587:23244-23263 Msa1455120:CDS 35.0%
!!! GGCTGAAAGTATGTTGATTT+TGG - tig0035587:23275-23294 Msa1455120:CDS 35.0%
! TTGATTTTGGATCCTGATAC+CGG - tig0035587:23288-23307 Msa1455120:CDS 35.0%
!!! CGTTGGAAGATTTTTTTGCT+AGG - tig0035587:23352-23371 Msa1455120:CDS 35.0%
AGAAATTGAAGGAGAGGGTT+TGG + tig0035587:22246-22265 None:intergenic 40.0%
GTGAAGAGAAATTGAAGGAG+AGG + tig0035587:22252-22271 None:intergenic 40.0%
AGGGTGTGAAGAGAAATTGA+AGG + tig0035587:22257-22276 None:intergenic 40.0%
! TCTTGGTAGTAGGTTCAACT+GGG - tig0035587:22431-22450 Msa1455120:CDS 40.0%
GTAGGTTCAACTGGGTATAT+AGG - tig0035587:22439-22458 Msa1455120:CDS 40.0%
GCAATAGCTAGAGAAAAGAG+TGG - tig0035587:22508-22527 Msa1455120:CDS 40.0%
GATGAGGATTTGAAGAACCT+AGG - tig0035587:22622-22641 Msa1455120:CDS 40.0%
GATTTGAAGAACCTAGGTGT+TGG - tig0035587:22628-22647 Msa1455120:CDS 40.0%
CAACATCAAAACCAACACCT+AGG + tig0035587:22642-22661 Msa1455120:intergenic 40.0%
TGTCTTGCTAGTAGAAATGG+AGG - tig0035587:22670-22689 Msa1455120:CDS 40.0%
GTCTTGCTAGTAGAAATGGA+GGG - tig0035587:22671-22690 Msa1455120:CDS 40.0%
TCTTGCTAGTAGAAATGGAG+GGG - tig0035587:22672-22691 Msa1455120:CDS 40.0%
TAGTAGAAATGGAGGGGTTA+AGG - tig0035587:22678-22697 Msa1455120:CDS 40.0%
!! CTTTTAGCTGGTAGGAAACT+TGG - tig0035587:22739-22758 Msa1455120:CDS 40.0%
CCATCACCAAACATCACATA+AGG + tig0035587:22961-22980 Msa1455120:intergenic 40.0%
! CCTTATGTGATGTTTGGTGA+TGG - tig0035587:22958-22977 Msa1455120:CDS 40.0%
! ATTTTACCTATTGGAGGACC+AGG - tig0035587:23069-23088 Msa1455120:CDS 40.0%
! TTTTACCTATTGGAGGACCA+GGG - tig0035587:23070-23089 Msa1455120:CDS 40.0%
!! CATTGACTCCATTGGAACAA+GGG - tig0035587:23097-23116 Msa1455120:CDS 40.0%
! ATTGACTCCATTGGAACAAG+GGG - tig0035587:23098-23117 Msa1455120:CDS 40.0%
GCTGCTGAGTTTGGAAAAAT+TGG - tig0035587:23240-23259 Msa1455120:CDS 40.0%
AACGTATCATTCCCATAGCT+CGG + tig0035587:23336-23355 Msa1455120:intergenic 40.0%
!!! ATTTTTTTGCTAGGGTGCTC+AGG - tig0035587:23361-23380 Msa1455120:CDS 40.0%
!!! TTTTTTTGCTAGGGTGCTCA+GGG - tig0035587:23362-23381 Msa1455120:CDS 40.0%
AGAAATTGAAGGAGAGGGTT+TGG + tig0035587:22246-22265 Msa1455120:intergenic 40.0%
GTGAAGAGAAATTGAAGGAG+AGG + tig0035587:22252-22271 Msa1455120:intergenic 40.0%
AGGGTGTGAAGAGAAATTGA+AGG + tig0035587:22257-22276 Msa1455120:intergenic 40.0%
! TCTTGGTAGTAGGTTCAACT+GGG - tig0035587:22431-22450 Msa1455120:CDS 40.0%
GTAGGTTCAACTGGGTATAT+AGG - tig0035587:22439-22458 Msa1455120:CDS 40.0%
GCAATAGCTAGAGAAAAGAG+TGG - tig0035587:22508-22527 Msa1455120:CDS 40.0%
GATGAGGATTTGAAGAACCT+AGG - tig0035587:22622-22641 Msa1455120:CDS 40.0%
GATTTGAAGAACCTAGGTGT+TGG - tig0035587:22628-22647 Msa1455120:CDS 40.0%
CAACATCAAAACCAACACCT+AGG + tig0035587:22642-22661 Msa1455120:intergenic 40.0%
TGTCTTGCTAGTAGAAATGG+AGG - tig0035587:22670-22689 Msa1455120:CDS 40.0%
GTCTTGCTAGTAGAAATGGA+GGG - tig0035587:22671-22690 Msa1455120:CDS 40.0%
TCTTGCTAGTAGAAATGGAG+GGG - tig0035587:22672-22691 Msa1455120:CDS 40.0%
TAGTAGAAATGGAGGGGTTA+AGG - tig0035587:22678-22697 Msa1455120:CDS 40.0%
!! CTTTTAGCTGGTAGGAAACT+TGG - tig0035587:22739-22758 Msa1455120:CDS 40.0%
CCATCACCAAACATCACATA+AGG + tig0035587:22961-22980 Msa1455120:intergenic 40.0%
! CCTTATGTGATGTTTGGTGA+TGG - tig0035587:22958-22977 Msa1455120:CDS 40.0%
! ATTTTACCTATTGGAGGACC+AGG - tig0035587:23069-23088 Msa1455120:CDS 40.0%
! TTTTACCTATTGGAGGACCA+GGG - tig0035587:23070-23089 Msa1455120:CDS 40.0%
!! CATTGACTCCATTGGAACAA+GGG - tig0035587:23097-23116 Msa1455120:CDS 40.0%
! ATTGACTCCATTGGAACAAG+GGG - tig0035587:23098-23117 Msa1455120:CDS 40.0%
GCTGCTGAGTTTGGAAAAAT+TGG - tig0035587:23240-23259 Msa1455120:CDS 40.0%
AACGTATCATTCCCATAGCT+CGG + tig0035587:23336-23355 Msa1455120:intergenic 40.0%
!!! ATTTTTTTGCTAGGGTGCTC+AGG - tig0035587:23361-23380 Msa1455120:CDS 40.0%
!!! TTTTTTTGCTAGGGTGCTCA+GGG - tig0035587:23362-23381 Msa1455120:CDS 40.0%
!! AGGGTTTGGTGTTTGAGTGA+GGG + tig0035587:22232-22251 None:intergenic 45.0%
!! GGTTGATGAAGTGAGAAGGA+GGG + tig0035587:22276-22295 None:intergenic 45.0%
!! AGGTTGATGAAGTGAGAAGG+AGG + tig0035587:22277-22296 None:intergenic 45.0%
! GTCTTGGTAGTAGGTTCAAC+TGG - tig0035587:22430-22449 Msa1455120:CDS 45.0%
ATGGAGGGGTTAAGGATTCA+TGG - tig0035587:22686-22705 Msa1455120:CDS 45.0%
!! GCTTGAGGATGAGTTGGTAA+AGG - tig0035587:22837-22856 Msa1455120:CDS 45.0%
!! GGATGAGTTGGTAAAGGAAG+CGG - tig0035587:22843-22862 Msa1455120:CDS 45.0%
AGGAAGCGGAGAAAGATGAT+AGG - tig0035587:22857-22876 Msa1455120:CDS 45.0%
! GGGAAGCCTTATGTGATGTT+TGG - tig0035587:22952-22971 Msa1455120:CDS 45.0%
!! GCATTGACTCCATTGGAACA+AGG - tig0035587:23096-23115 Msa1455120:CDS 45.0%
TCAGCAGCATCTTCCAATGA+AGG + tig0035587:23228-23247 Msa1455120:intergenic 45.0%
TTGGAAGATGCTGCTGAGTT+TGG - tig0035587:23231-23250 Msa1455120:CDS 45.0%
GAGCTATGGGAATGATACGT+TGG - tig0035587:23335-23354 Msa1455120:CDS 45.0%
!! AGGGTTTGGTGTTTGAGTGA+GGG + tig0035587:22232-22251 Msa1455120:intergenic 45.0%
!! GGTTGATGAAGTGAGAAGGA+GGG + tig0035587:22276-22295 Msa1455120:intergenic 45.0%
!! AGGTTGATGAAGTGAGAAGG+AGG + tig0035587:22277-22296 Msa1455120:intergenic 45.0%
! GTCTTGGTAGTAGGTTCAAC+TGG - tig0035587:22430-22449 Msa1455120:CDS 45.0%
ATGGAGGGGTTAAGGATTCA+TGG - tig0035587:22686-22705 Msa1455120:CDS 45.0%
!! GCTTGAGGATGAGTTGGTAA+AGG - tig0035587:22837-22856 Msa1455120:CDS 45.0%
!! GGATGAGTTGGTAAAGGAAG+CGG - tig0035587:22843-22862 Msa1455120:CDS 45.0%
AGGAAGCGGAGAAAGATGAT+AGG - tig0035587:22857-22876 Msa1455120:CDS 45.0%
! GGGAAGCCTTATGTGATGTT+TGG - tig0035587:22952-22971 Msa1455120:CDS 45.0%
!! GCATTGACTCCATTGGAACA+AGG - tig0035587:23096-23115 Msa1455120:CDS 45.0%
TCAGCAGCATCTTCCAATGA+AGG + tig0035587:23228-23247 Msa1455120:intergenic 45.0%
TTGGAAGATGCTGCTGAGTT+TGG - tig0035587:23231-23250 Msa1455120:CDS 45.0%
GAGCTATGGGAATGATACGT+TGG - tig0035587:23335-23354 Msa1455120:CDS 45.0%
! TGAGGGGTGTGTGATGAAAG+TGG + tig0035587:22215-22234 None:intergenic 50.0%
!! GGGTTTGGTGTTTGAGTGAG+GGG + tig0035587:22231-22250 None:intergenic 50.0%
!! GAGGGTTTGGTGTTTGAGTG+AGG + tig0035587:22233-22252 None:intergenic 50.0%
GCTGAAGCTTGAGGATGAGT+TGG - tig0035587:22831-22850 Msa1455120:CDS 50.0%
AATGGAGTCAATGCCTTCCC+TGG + tig0035587:23090-23109 Msa1455120:intergenic 50.0%
!! AGGGAAGGCATTGACTCCAT+TGG - tig0035587:23089-23108 Msa1455120:CDS 50.0%
ATGAGAAGACGCCGAGCTAT+GGG - tig0035587:23322-23341 Msa1455120:CDS 50.0%
! TGAGGGGTGTGTGATGAAAG+TGG + tig0035587:22215-22234 Msa1455120:intergenic 50.0%
!! GGGTTTGGTGTTTGAGTGAG+GGG + tig0035587:22231-22250 Msa1455120:intergenic 50.0%
!! GAGGGTTTGGTGTTTGAGTG+AGG + tig0035587:22233-22252 Msa1455120:intergenic 50.0%
GCTGAAGCTTGAGGATGAGT+TGG - tig0035587:22831-22850 Msa1455120:CDS 50.0%
AATGGAGTCAATGCCTTCCC+TGG + tig0035587:23090-23109 Msa1455120:intergenic 50.0%
!! AGGGAAGGCATTGACTCCAT+TGG - tig0035587:23089-23108 Msa1455120:CDS 50.0%
ATGAGAAGACGCCGAGCTAT+GGG - tig0035587:23322-23341 Msa1455120:CDS 50.0%
GCACGCTGAAACTCGAGAAG+AGG + tig0035587:22808-22827 Msa1455120:intergenic 55.0%
ACCTATTGGAGGACCAGGGA+AGG - tig0035587:23074-23093 Msa1455120:CDS 55.0%
CTTCTCATCGCTGTACTCGC+CGG + tig0035587:23310-23329 Msa1455120:intergenic 55.0%
GATGAGAAGACGCCGAGCTA+TGG - tig0035587:23321-23340 Msa1455120:CDS 55.0%
! TTTGCTAGGGTGCTCAGGGA+AGG - tig0035587:23366-23385 Msa1455120:CDS 55.0%
! TTGCTAGGGTGCTCAGGGAA+GGG - tig0035587:23367-23386 Msa1455120:CDS 55.0%
GCACGCTGAAACTCGAGAAG+AGG + tig0035587:22808-22827 Msa1455120:intergenic 55.0%
ACCTATTGGAGGACCAGGGA+AGG - tig0035587:23074-23093 Msa1455120:CDS 55.0%
CTTCTCATCGCTGTACTCGC+CGG + tig0035587:23310-23329 Msa1455120:intergenic 55.0%
GATGAGAAGACGCCGAGCTA+TGG - tig0035587:23321-23340 Msa1455120:CDS 55.0%
! TTTGCTAGGGTGCTCAGGGA+AGG - tig0035587:23366-23385 Msa1455120:CDS 55.0%
! TTGCTAGGGTGCTCAGGGAA+GGG - tig0035587:23367-23386 Msa1455120:CDS 55.0%
GCGTGCGAAGCTGAAGCTTG+AGG - tig0035587:22822-22841 Msa1455120:CDS 60.0%
GCCTTCCCTGGTCCTCCAAT+AGG + tig0035587:23078-23097 Msa1455120:intergenic 60.0%
TCGCTGTACTCGCCGGTATC+AGG + tig0035587:23303-23322 Msa1455120:intergenic 60.0%
! TAGGGTGCTCAGGGAAGGGA+TGG - tig0035587:23371-23390 Msa1455120:CDS 60.0%
! GGGATGGCTGGTCAAGAGCT+AGG - tig0035587:23387-23406 Msa1455120:CDS 60.0%
GCGTGCGAAGCTGAAGCTTG+AGG - tig0035587:22822-22841 Msa1455120:CDS 60.0%
GCCTTCCCTGGTCCTCCAAT+AGG + tig0035587:23078-23097 Msa1455120:intergenic 60.0%
TCGCTGTACTCGCCGGTATC+AGG + tig0035587:23303-23322 Msa1455120:intergenic 60.0%
! TAGGGTGCTCAGGGAAGGGA+TGG - tig0035587:23371-23390 Msa1455120:CDS 60.0%
! GGGATGGCTGGTCAAGAGCT+AGG - tig0035587:23387-23406 Msa1455120:CDS 60.0%
GTGCTCAGGGAAGGGATGGC+TGG - tig0035587:23375-23394 Msa1455120:CDS 65.0%
GTGCTCAGGGAAGGGATGGC+TGG - tig0035587:23375-23394 Msa1455120:CDS 65.0%
Chromosome Type Strat End Strand Name
tig0035587 gene 22193 23428 22193 ID=Msa1455120;Name=Msa1455120
tig0035587 mRNA 22193 23428 22193 ID=Msa1455120-mRNA-1;Parent=Msa1455120;Name=Msa1455120-mRNA-1;_AED=0.24;_eAED=0.24;_QI=0|-1|0|1|-1|1|1|0|411
tig0035587 exon 22193 23428 22193 ID=Msa1455120-mRNA-1:exon:20135;Parent=Msa1455120-mRNA-1
tig0035587 CDS 22193 23428 22193 ID=Msa1455120-mRNA-1:cds;Parent=Msa1455120-mRNA-1
Gene Sequence

>Msa1455120

ATGTCCCTGTGTTATTCTTCCACTTTCATCACACACCCCTCACTCAAACACCAAACCCTCTCCTTCAATTTCTCTTCACACCCTCCTTCTCACTTCATCAACCTATTCAAGGTAAAATCACACAGACCCATTAAGTATAACAAACAAAAATTGAAACTTTATGCATCCCTTTCACAATCTGAACAAGTTGAAACGACCCCATCAACATTTAGAAGCAAGAATCCAAAAGATGTTAATGTCTTGGTAGTAGGTTCAACTGGGTATATAGGAAAATTTGTAGTGAAAGAGTTGATTCAAAGAGGGTTTAATGTTACTGCAATAGCTAGAGAAAAGAGTGGAATAAAGGGTAGCATTGATAAAGAAACAACATTGAATGAGTTAAAAGGTGCTAATGTGTGTTTCTCTGATGTGACAAATTTGGATGTTTTTGATGAGGATTTGAAGAACCTAGGTGTTGGTTTTGATGTTGTTGTGTCTTGTCTTGCTAGTAGAAATGGAGGGGTTAAGGATTCATGGAAGATTGATTATGAAGCTACTAAGAATAGTCTTTTAGCTGGTAGGAAACTTGGTGCTTCTCATTTTGTATTGCTTTCGGCAATTTGTGTTCAGAAGCCTCTTCTCGAGTTTCAGCGTGCGAAGCTGAAGCTTGAGGATGAGTTGGTAAAGGAAGCGGAGAAAGATGATAGGTTTAGTTATAGTATAGTGAGGCCGACCGCGTTTTTTAAGAGTTTAGGTGGTCAAGTTGATTTGGTGAAAGATGGGAAGCCTTATGTGATGTTTGGTGATGGAAAGTTGTGTGCTTGTAAACCTATAAGTGAACAAGATTTGGCTTCTTTTATTGTTGATTGTGTAATGAGTGAGGATAAAATTAACAAGATTTTACCTATTGGAGGACCAGGGAAGGCATTGACTCCATTGGAACAAGGGGAAATTTTGTTTAAGCTTTTAGGGAAGGAGCCTAAGTTCTTGAAAGTTCCAATAGGGATTATGGATTTTGCTATTGGTGTTCTTGACAATTTGGTTAAGGTATTTCCTTCATTGGAAGATGCTGCTGAGTTTGGAAAAATTGGAAGGTACTATGCGGCTGAAAGTATGTTGATTTTGGATCCTGATACCGGCGAGTACAGCGATGAGAAGACGCCGAGCTATGGGAATGATACGTTGGAAGATTTTTTTGCTAGGGTGCTCAGGGAAGGGATGGCTGGTCAAGAGCTAGGTGAGCAAACAATATTTTAA

Protein sequence

>Msa1455120

MSLCYSSTFITHPSLKHQTLSFNFSSHPPSHFINLFKVKSHRPIKYNKQKLKLYASLSQSEQVETTPSTFRSKNPKDVNVLVVGSTGYIGKFVVKELIQRGFNVTAIAREKSGIKGSIDKETTLNELKGANVCFSDVTNLDVFDEDLKNLGVGFDVVVSCLASRNGGVKDSWKIDYEATKNSLLAGRKLGASHFVLLSAICVQKPLLEFQRAKLKLEDELVKEAEKDDRFSYSIVRPTAFFKSLGGQVDLVKDGKPYVMFGDGKLCACKPISEQDLASFIVDCVMSEDKINKILPIGGPGKALTPLEQGEILFKLLGKEPKFLKVPIGIMDFAIGVLDNLVKVFPSLEDAAEFGKIGRYYAAESMLILDPDTGEYSDEKTPSYGNDTLEDFFARVLREGMAGQELGEQTIF*