AlfalfaGEDB | Msa1455120

M. sativa cultivar zhongmu-4 / Msa1455120

KEGG: K19073
GO: GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006778 GO:0006779 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009526 GO:0009534 GO:0009536 GO:0009579 GO:0009941 GO:0009987 GO:0015994 GO:0015995 GO:0016020 GO:0016491 GO:0018130 GO:0019438 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0033013 GO:0033014 GO:0034641 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0046483 GO:0051186 GO:0051188 GO:0051744 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576
PFAM: PF13460.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1455120	RHN72322.1	98.058	412	7	1	1	411	40	451	0.0	823

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1455120	sp\|Q1H537\|DCVR_ARATH	71.327	422	100	5	1	408	1	415	0.0	600

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1455120	A0A396J4V0	98.058	412	7	1	1	411	40	451	0.0	823

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000220	Msa1455120	0.867433	1.373331e-65	-8.615850e-47
Msa0000780	Msa1455120	0.812743	3.636448e-51	-8.615850e-47
Msa0001420	Msa1455120	0.874064	9.038362e-68	-8.615850e-47
Msa0001460	Msa1455120	0.847661	1.004097e-59	-8.615850e-47
Msa0001510	Msa1455120	0.857624	1.437950e-62	-8.615850e-47
Msa0001540	Msa1455120	0.924251	9.036703e-90	-8.615850e-47
Msa0002060	Msa1455120	0.862974	3.464211e-64	-8.615850e-47
Msa0002690	Msa1455120	0.839531	1.498906e-57	-8.615850e-47
Msa0002700	Msa1455120	0.835802	1.357239e-56	-8.615850e-47
Msa0004180	Msa1455120	0.800180	1.626249e-48	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1455120	MtrunA17_Chr2g0286401	98.058	412	7	1	1	411	40	451	0.0	823

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1455120	AT5G18660.1	71.327	422	100	5	1	408	1	415	0.0	600

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Find 87 sgRNAs with CRISPR-Local

Find 230 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTTCCCCTTGTTCCAA+TGG	0.458224	tig0035587:+22494	Msa1455120:intergenic
AACGTATCATTCCCATAGCT+CGG	0.554956	tig0035587:+22266	Msa1455120:intergenic
AACTTGTTCAGATTGTGAAA+GGG	0.521535	tig0035587:+23240	Msa1455120:intergenic
AAGTTCTTGAAAGTTCCAAT+AGG	0.430764	tig0035587:-22446	Msa1455120:CDS
AAGTTGATTTGGTGAAAGAT+GGG	0.505222	tig0035587:-22667	Msa1455120:CDS
AATAGGTTGATGAAGTGAGA+AGG	0.547274	tig0035587:+23322	Msa1455120:intergenic
AATGGAGTCAATGCCTTCCC+TGG	0.459081	tig0035587:+22512	Msa1455120:intergenic
ACAACATTGAATGAGTTAAA+AGG	0.336207	tig0035587:-23043	Msa1455120:CDS
ACCAAGACATTAACATCTTT+TGG	0.207193	tig0035587:+23184	Msa1455120:intergenic
ACCTATAAGTGAACAAGATT+TGG	0.307663	tig0035587:-22600	Msa1455120:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCTTGCTTCTAAATGTTGAT+GGG	+	tig0035587:22393-22412	Msa1455120:intergenic	30.0%
TTCTTGCTTCTAAATGTTGA+TGG	+	tig0035587:22394-22413	Msa1455120:intergenic	30.0%
TCCAAAAGATGTTAATGTCT+TGG	-	tig0035587:22414-22433	Msa1455120:CDS	30.0%
TAGAGAAAAGAGTGGAATAA+AGG	-	tig0035587:22516-22535	Msa1455120:CDS	30.0%
AGAGAAAAGAGTGGAATAAA+GGG	-	tig0035587:22517-22536	Msa1455120:CDS	30.0%
TTTCTCTGATGTGACAAATT+TGG	-	tig0035587:22591-22610	Msa1455120:CDS	30.0%
GGTTTAGTTATAGTATAGTG+AGG	-	tig0035587:22878-22897	Msa1455120:CDS	30.0%
ACCTAAACTCTTAAAAAACG+CGG	+	tig0035587:22908-22927	Msa1455120:intergenic	30.0%
ACCTATAAGTGAACAAGATT+TGG	-	tig0035587:22999-23018	Msa1455120:CDS	30.0%
ATTGGAACTTTCAAGAACTT+AGG	+	tig0035587:23153-23172	Msa1455120:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0035587	gene	22193	23428	22193	ID=Msa1455120;Name=Msa1455120
tig0035587	mRNA	22193	23428	22193	ID=Msa1455120-mRNA-1;Parent=Msa1455120;Name=Msa1455120-mRNA-1;_AED=0.24;_eAED=0.24;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|411
tig0035587	exon	22193	23428	22193	ID=Msa1455120-mRNA-1:exon:20135;Parent=Msa1455120-mRNA-1
tig0035587	CDS	22193	23428	22193	ID=Msa1455120-mRNA-1:cds;Parent=Msa1455120-mRNA-1

Gene Sequence

>Msa1455120

ATGTCCCTGTGTTATTCTTCCACTTTCATCACACACCCCTCACTCAAACACCAAACCCTCTCCTTCAATTTCTCTTCACACCCTCCTTCTCACTTCATCAACCTATTCAAGGTAAAATCACACAGACCCATTAAGTATAACAAACAAAAATTGAAACTTTATGCATCCCTTTCACAATCTGAACAAGTTGAAACGACCCCATCAACATTTAGAAGCAAGAATCCAAAAGATGTTAATGTCTTGGTAGTAGGTTCAACTGGGTATATAGGAAAATTTGTAGTGAAAGAGTTGATTCAAAGAGGGTTTAATGTTACTGCAATAGCTAGAGAAAAGAGTGGAATAAAGGGTAGCATTGATAAAGAAACAACATTGAATGAGTTAAAAGGTGCTAATGTGTGTTTCTCTGATGTGACAAATTTGGATGTTTTTGATGAGGATTTGAAGAACCTAGGTGTTGGTTTTGATGTTGTTGTGTCTTGTCTTGCTAGTAGAAATGGAGGGGTTAAGGATTCATGGAAGATTGATTATGAAGCTACTAAGAATAGTCTTTTAGCTGGTAGGAAACTTGGTGCTTCTCATTTTGTATTGCTTTCGGCAATTTGTGTTCAGAAGCCTCTTCTCGAGTTTCAGCGTGCGAAGCTGAAGCTTGAGGATGAGTTGGTAAAGGAAGCGGAGAAAGATGATAGGTTTAGTTATAGTATAGTGAGGCCGACCGCGTTTTTTAAGAGTTTAGGTGGTCAAGTTGATTTGGTGAAAGATGGGAAGCCTTATGTGATGTTTGGTGATGGAAAGTTGTGTGCTTGTAAACCTATAAGTGAACAAGATTTGGCTTCTTTTATTGTTGATTGTGTAATGAGTGAGGATAAAATTAACAAGATTTTACCTATTGGAGGACCAGGGAAGGCATTGACTCCATTGGAACAAGGGGAAATTTTGTTTAAGCTTTTAGGGAAGGAGCCTAAGTTCTTGAAAGTTCCAATAGGGATTATGGATTTTGCTATTGGTGTTCTTGACAATTTGGTTAAGGTATTTCCTTCATTGGAAGATGCTGCTGAGTTTGGAAAAATTGGAAGGTACTATGCGGCTGAAAGTATGTTGATTTTGGATCCTGATACCGGCGAGTACAGCGATGAGAAGACGCCGAGCTATGGGAATGATACGTTGGAAGATTTTTTTGCTAGGGTGCTCAGGGAAGGGATGGCTGGTCAAGAGCTAGGTGAGCAAACAATATTTTAA

Protein sequence

>Msa1455120

MSLCYSSTFITHPSLKHQTLSFNFSSHPPSHFINLFKVKSHRPIKYNKQKLKLYASLSQSEQVETTPSTFRSKNPKDVNVLVVGSTGYIGKFVVKELIQRGFNVTAIAREKSGIKGSIDKETTLNELKGANVCFSDVTNLDVFDEDLKNLGVGFDVVVSCLASRNGGVKDSWKIDYEATKNSLLAGRKLGASHFVLLSAICVQKPLLEFQRAKLKLEDELVKEAEKDDRFSYSIVRPTAFFKSLGGQVDLVKDGKPYVMFGDGKLCACKPISEQDLASFIVDCVMSEDKINKILPIGGPGKALTPLEQGEILFKLLGKEPKFLKVPIGIMDFAIGVLDNLVKVFPSLEDAAEFGKIGRYYAAESMLILDPDTGEYSDEKTPSYGNDTLEDFFARVLREGMAGQELGEQTIF*