AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0274870


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0274870 MtrunA17_Chr2g0286401 98.058 412 7 1 1 411 40 451 0.0 823
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0274870 AT5G18660.1 71.327 422 100 5 1 408 1 415 0.0 600

Find 87 sgRNAs with CRISPR-Local

Find 230 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCAAATCTTGTTCACTTAT+AGG 0.199757 2_3:+6705330 None:intergenic
ACCAAGACATTAACATCTTT+TGG 0.207193 2_3:+6705915 None:intergenic
GAAAGTTCCAATAGGGATTA+TGG 0.213230 2_3:-6705169 Msa0274870:CDS
TTTCTCTGATGTGACAAATT+TGG 0.231196 2_3:-6705739 Msa0274870:CDS
TAGAGAAAAGAGTGGAATAA+AGG 0.258502 2_3:-6705814 Msa0274870:CDS
GGCTGAAAGTATGTTGATTT+TGG 0.261140 2_3:-6705055 Msa0274870:CDS
TATTGGTGTTCTTGACAATT+TGG 0.267908 2_3:-6705139 Msa0274870:CDS
GTCTTGGTAGTAGGTTCAAC+TGG 0.297195 2_3:-6705900 Msa0274870:CDS
TCGCTGTACTCGCCAGTATC+AGG 0.304596 2_3:+6705030 None:intergenic
ACCTATAAGTGAACAAGATT+TGG 0.307663 2_3:-6705331 Msa0274870:CDS
TTGGAAGATGCTGCTGAGTT+TGG 0.326591 2_3:-6705099 Msa0274870:CDS
ACAACATTGAATGAGTTAAA+AGG 0.336207 2_3:-6705774 Msa0274870:CDS
TTCTTGCTTCTAAATGTTGA+TGG 0.349443 2_3:+6705939 None:intergenic
GCAAAATCCATAATCCCTAT+TGG 0.356770 2_3:+6705162 None:intergenic
TTTAGGTGGTCAAGTTGATT+TGG 0.358962 2_3:-6705409 Msa0274870:CDS
GAGGGTTTGGTGTTTGAGTG+AGG 0.371768 2_3:+6706100 None:intergenic
ATGGAGGGGTTAAGGATTCA+TGG 0.373729 2_3:-6705644 Msa0274870:CDS
GGTTAAGGTATTTCCTTCAT+TGG 0.375273 2_3:-6705118 Msa0274870:CDS
TAGTAGAAATGGAGGGGTTA+AGG 0.375942 2_3:-6705652 Msa0274870:CDS
TATTGGAACTTTCAAGAACT+TGG 0.381093 2_3:+6705179 None:intergenic
AGAAATTGAAGGAGAGGGTT+TGG 0.390580 2_3:+6706087 None:intergenic
TGTTCTTGACAATTTGGTTA+AGG 0.399383 2_3:-6705133 Msa0274870:CDS
AGGGTTTGGTGTTTGAGTGA+GGG 0.399831 2_3:+6706101 None:intergenic
AGTTCTTGAAAGTTCCAATA+GGG 0.406884 2_3:-6705176 Msa0274870:CDS
TCTTGTCTTGCTAGTAGAAA+TGG 0.408504 2_3:-6705663 Msa0274870:CDS
AGAGAAAAGAGTGGAATAAA+GGG 0.408945 2_3:-6705813 Msa0274870:CDS
GTAGGTTCAACTGGGTATAT+AGG 0.410679 2_3:-6705891 Msa0274870:CDS
TCTTGCTTCTAAATGTTGAT+GGG 0.421309 2_3:+6705940 None:intergenic
TCACTTCATCAACCTATTCA+AGG 0.430086 2_3:-6706048 Msa0274870:CDS
AAGTTCTTGAAAGTTCCAAT+AGG 0.431475 2_3:-6705177 Msa0274870:CDS
GTGAAAGAGTTGATTCAAAG+AGG 0.433123 2_3:-6705858 Msa0274870:CDS
CAACTTGTTCAGATTGTGAA+AGG 0.441779 2_3:+6705970 None:intergenic
TCCAAAAGATGTTAATGTCT+TGG 0.443326 2_3:-6705916 Msa0274870:CDS
GATGTTAATGTCTTGGTAGT+AGG 0.450407 2_3:-6705909 Msa0274870:CDS
GGGTTTGGTGTTTGAGTGAG+GGG 0.452202 2_3:+6706102 None:intergenic
CAAGTTGATTTGGTGAAAGA+TGG 0.452904 2_3:-6705399 Msa0274870:CDS
GTGCTCAGGGAAGGGATGGC+TGG 0.454004 2_3:-6704955 Msa0274870:CDS
AAAATTTCCCCTTGTTCCAA+TGG 0.458224 2_3:+6705225 None:intergenic
AATGGAGTCAATGCCTTCCC+TGG 0.459081 2_3:+6705243 None:intergenic
GCCTTCCCTGGTCCTCCAAT+AGG 0.460882 2_3:+6705255 None:intergenic
CCATCACCAAACATCACATA+AGG 0.461120 2_3:+6705372 None:intergenic
TTTGCTAGGGTGCTCAGGGA+AGG 0.472138 2_3:-6704964 Msa0274870:CDS
GTGAAGAGAAATTGAAGGAG+AGG 0.474439 2_3:+6706081 None:intergenic
AGGTTGATGAAGTGAGAAGG+AGG 0.475446 2_3:+6706056 None:intergenic
TTGCTAGGGTGCTCAGGGAA+GGG 0.475808 2_3:-6704963 Msa0274870:CDS
GGATGAGTTGGTAAAGGAAG+CGG 0.485061 2_3:-6705487 Msa0274870:CDS
GGGAAGCCTTATGTGATGTT+TGG 0.486837 2_3:-6705378 Msa0274870:CDS
TGAAAGAGTTGATTCAAAGA+GGG 0.488936 2_3:-6705857 Msa0274870:CDS
GATGAGAAGACGCCGAGCTA+TGG 0.490154 2_3:-6705009 Msa0274870:CDS
AGGAAGCGGAGAAAGATGAT+AGG 0.500448 2_3:-6705473 Msa0274870:CDS
TAGGGTGCTCAGGGAAGGGA+TGG 0.504745 2_3:-6704959 Msa0274870:CDS
AAGTTGATTTGGTGAAAGAT+GGG 0.505222 2_3:-6705398 Msa0274870:CDS
ATGAGAAGACGCCGAGCTAT+GGG 0.509494 2_3:-6705008 Msa0274870:CDS
AGGGAAGGCATTGACTCCAT+TGG 0.512516 2_3:-6705241 Msa0274870:CDS
AACTTGTTCAGATTGTGAAA+GGG 0.521535 2_3:+6705971 None:intergenic
GCTTGAGGATGAGTTGGTAA+AGG 0.525596 2_3:-6705493 Msa0274870:CDS
ATTGGAACTTTCAAGAACTT+GGG 0.529491 2_3:+6705180 None:intergenic
TCAGCAGCATCTTCCAATGA+AGG 0.532717 2_3:+6705105 None:intergenic
TGAGGGGTGTGTGATGAAAG+TGG 0.534640 2_3:+6706118 None:intergenic
CTTGCTTCTAAATGTTGATG+GGG 0.544812 2_3:+6705941 None:intergenic
AGGGTGTGAAGAGAAATTGA+AGG 0.545623 2_3:+6706076 None:intergenic
AATAGGTTGATGAAGTGAGA+AGG 0.547274 2_3:+6706053 None:intergenic
TGAAGAGAAATTGAAGGAGA+GGG 0.547534 2_3:+6706082 None:intergenic
GCACGCTGAAACTCGAGAAG+AGG 0.548329 2_3:+6705525 None:intergenic
GGGATGGCTGGTCAAGAGCT+AGG 0.549334 2_3:-6704943 Msa0274870:CDS
ACCTATTGGAGGACCAGGGA+AGG 0.552480 2_3:-6705256 Msa0274870:CDS
GCGTGCGAAGCTGAAGCTTG+AGG 0.553193 2_3:-6705508 Msa0274870:CDS
GCTGAAGCTTGAGGATGAGT+TGG 0.553213 2_3:-6705499 Msa0274870:CDS
AACGTATCATTCCCATAGCT+CGG 0.554956 2_3:+6704997 None:intergenic
GATTTGAAGAACCTAGGTGT+TGG 0.562927 2_3:-6705702 Msa0274870:CDS
CCTTATGTGATGTTTGGTGA+TGG 0.564492 2_3:-6705372 Msa0274870:CDS
GGTTGATGAAGTGAGAAGGA+GGG 0.571070 2_3:+6706057 None:intergenic
GCATTGACTCCATTGGAACA+AGG 0.574091 2_3:-6705234 Msa0274870:CDS
GATGAGGATTTGAAGAACCT+AGG 0.591299 2_3:-6705708 Msa0274870:CDS
TCTTGCTAGTAGAAATGGAG+GGG 0.600302 2_3:-6705658 Msa0274870:CDS
CATTGACTCCATTGGAACAA+GGG 0.600349 2_3:-6705233 Msa0274870:CDS
GAGCTATGGGAATGATACGT+TGG 0.608370 2_3:-6704995 Msa0274870:CDS
TGTTGATTGTGTAATGAGTG+AGG 0.616265 2_3:-6705298 Msa0274870:CDS
ATTGACTCCATTGGAACAAG+GGG 0.618767 2_3:-6705232 Msa0274870:CDS
GTCTTGCTAGTAGAAATGGA+GGG 0.622888 2_3:-6705659 Msa0274870:CDS
TGTCTTGCTAGTAGAAATGG+AGG 0.623450 2_3:-6705660 Msa0274870:CDS
GGTTTAGTTATAGTATAGTG+AGG 0.643964 2_3:-6705452 Msa0274870:CDS
GCAATAGCTAGAGAAAAGAG+TGG 0.645121 2_3:-6705822 Msa0274870:CDS
TGAAAGTGGAAGAATAACAC+AGG 0.652551 2_3:+6706132 None:intergenic
CAACATCAAAACCAACACCT+AGG 0.664857 2_3:+6705691 None:intergenic
TCTTGGTAGTAGGTTCAACT+GGG 0.681666 2_3:-6705899 Msa0274870:CDS
GAAAGTGGAAGAATAACACA+GGG 0.724228 2_3:+6706133 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTGTTTGTTATACTTAAT+GGG + chr2_3:6705053-6705072 None:intergenic 15.0%
!!! TTTTTGTTTGTTATACTTAA+TGG + chr2_3:6705054-6705073 None:intergenic 15.0%
!!! AAATTTTGTTTAAGCTTTTA+GGG - chr2_3:6705852-6705871 Msa0274870:CDS 15.0%
!!! TTTTGTTTGTTATACTTAAT+GGG + chr2_3:6705053-6705072 None:intergenic 15.0%
!!! TTTTTGTTTGTTATACTTAA+TGG + chr2_3:6705054-6705073 None:intergenic 15.0%
!!! AAATTTTGTTTAAGCTTTTA+GGG - chr2_3:6705852-6705871 Msa0274870:CDS 15.0%
!!! ATTAACAAGATTTTACCTAT+TGG - chr2_3:6705791-6705810 Msa0274870:CDS 20.0%
!!! GAAATTTTGTTTAAGCTTTT+AGG - chr2_3:6705851-6705870 Msa0274870:CDS 20.0%
!!! ATTAACAAGATTTTACCTAT+TGG - chr2_3:6705791-6705810 Msa0274870:CDS 20.0%
!!! GAAATTTTGTTTAAGCTTTT+AGG - chr2_3:6705851-6705870 Msa0274870:CDS 20.0%
! ACAACATTGAATGAGTTAAA+AGG - chr2_3:6705287-6705306 Msa0274870:CDS 25.0%
!!! AAATTTGGATGTTTTTGATG+AGG - chr2_3:6705337-6705356 Msa0274870:CDS 25.0%
!! TTCTCATTTTGTATTGCTTT+CGG - chr2_3:6705496-6705515 Msa0274870:CDS 25.0%
! ACAACATTGAATGAGTTAAA+AGG - chr2_3:6705287-6705306 Msa0274870:CDS 25.0%
!!! AAATTTGGATGTTTTTGATG+AGG - chr2_3:6705337-6705356 Msa0274870:CDS 25.0%
!! TTCTCATTTTGTATTGCTTT+CGG - chr2_3:6705496-6705515 Msa0274870:CDS 25.0%
! TGTGTGATTTTACCTTGAAT+AGG + chr2_3:6705028-6705047 None:intergenic 30.0%
! AACTTGTTCAGATTGTGAAA+GGG + chr2_3:6705093-6705112 None:intergenic 30.0%
TCTTGCTTCTAAATGTTGAT+GGG + chr2_3:6705124-6705143 None:intergenic 30.0%
TTCTTGCTTCTAAATGTTGA+TGG + chr2_3:6705125-6705144 None:intergenic 30.0%
TCCAAAAGATGTTAATGTCT+TGG - chr2_3:6705145-6705164 Msa0274870:CDS 30.0%
! ACCAAGACATTAACATCTTT+TGG + chr2_3:6705149-6705168 None:intergenic 30.0%
! TGAAAGAGTTGATTCAAAGA+GGG - chr2_3:6705204-6705223 Msa0274870:CDS 30.0%
TAGAGAAAAGAGTGGAATAA+AGG - chr2_3:6705247-6705266 Msa0274870:CDS 30.0%
AGAGAAAAGAGTGGAATAAA+GGG - chr2_3:6705248-6705267 Msa0274870:CDS 30.0%
TTTCTCTGATGTGACAAATT+TGG - chr2_3:6705322-6705341 Msa0274870:CDS 30.0%
! ACTAAGAATAGTCTTTTAGC+TGG - chr2_3:6705458-6705477 Msa0274870:CDS 30.0%
GGTTTAGTTATAGTATAGTG+AGG - chr2_3:6705609-6705628 Msa0274870:CDS 30.0%
ACCTAAACTCTTAAAAAACG+CGG + chr2_3:6705639-6705658 None:intergenic 30.0%
!! AAGTTGATTTGGTGAAAGAT+GGG - chr2_3:6705663-6705682 Msa0274870:CDS 30.0%
ACCTATAAGTGAACAAGATT+TGG - chr2_3:6705730-6705749 Msa0274870:CDS 30.0%
! AACAAGATTTTACCTATTGG+AGG - chr2_3:6705794-6705813 Msa0274870:CDS 30.0%
!! TTTGTTTAAGCTTTTAGGGA+AGG - chr2_3:6705856-6705875 Msa0274870:CDS 30.0%
ATTGGAACTTTCAAGAACTT+GGG + chr2_3:6705884-6705903 None:intergenic 30.0%
TATTGGAACTTTCAAGAACT+TGG + chr2_3:6705885-6705904 None:intergenic 30.0%
AAGTTCTTGAAAGTTCCAAT+AGG - chr2_3:6705884-6705903 Msa0274870:CDS 30.0%
AGTTCTTGAAAGTTCCAATA+GGG - chr2_3:6705885-6705904 Msa0274870:CDS 30.0%
! TATTGGTGTTCTTGACAATT+TGG - chr2_3:6705922-6705941 Msa0274870:CDS 30.0%
TGTTCTTGACAATTTGGTTA+AGG - chr2_3:6705928-6705947 Msa0274870:CDS 30.0%
!! AAAAATTGGAAGGTACTATG+CGG - chr2_3:6705985-6706004 Msa0274870:CDS 30.0%
!!! GTTGGAAGATTTTTTTGCTA+GGG - chr2_3:6706084-6706103 Msa0274870:CDS 30.0%
! TGTGTGATTTTACCTTGAAT+AGG + chr2_3:6705028-6705047 None:intergenic 30.0%
! AACTTGTTCAGATTGTGAAA+GGG + chr2_3:6705093-6705112 None:intergenic 30.0%
TCTTGCTTCTAAATGTTGAT+GGG + chr2_3:6705124-6705143 None:intergenic 30.0%
TTCTTGCTTCTAAATGTTGA+TGG + chr2_3:6705125-6705144 None:intergenic 30.0%
TCCAAAAGATGTTAATGTCT+TGG - chr2_3:6705145-6705164 Msa0274870:CDS 30.0%
! ACCAAGACATTAACATCTTT+TGG + chr2_3:6705149-6705168 None:intergenic 30.0%
! TGAAAGAGTTGATTCAAAGA+GGG - chr2_3:6705204-6705223 Msa0274870:CDS 30.0%
TAGAGAAAAGAGTGGAATAA+AGG - chr2_3:6705247-6705266 Msa0274870:CDS 30.0%
AGAGAAAAGAGTGGAATAAA+GGG - chr2_3:6705248-6705267 Msa0274870:CDS 30.0%
TTTCTCTGATGTGACAAATT+TGG - chr2_3:6705322-6705341 Msa0274870:CDS 30.0%
! ACTAAGAATAGTCTTTTAGC+TGG - chr2_3:6705458-6705477 Msa0274870:CDS 30.0%
GGTTTAGTTATAGTATAGTG+AGG - chr2_3:6705609-6705628 Msa0274870:CDS 30.0%
ACCTAAACTCTTAAAAAACG+CGG + chr2_3:6705639-6705658 None:intergenic 30.0%
!! AAGTTGATTTGGTGAAAGAT+GGG - chr2_3:6705663-6705682 Msa0274870:CDS 30.0%
ACCTATAAGTGAACAAGATT+TGG - chr2_3:6705730-6705749 Msa0274870:CDS 30.0%
! AACAAGATTTTACCTATTGG+AGG - chr2_3:6705794-6705813 Msa0274870:CDS 30.0%
!! TTTGTTTAAGCTTTTAGGGA+AGG - chr2_3:6705856-6705875 Msa0274870:CDS 30.0%
ATTGGAACTTTCAAGAACTT+GGG + chr2_3:6705884-6705903 None:intergenic 30.0%
TATTGGAACTTTCAAGAACT+TGG + chr2_3:6705885-6705904 None:intergenic 30.0%
AAGTTCTTGAAAGTTCCAAT+AGG - chr2_3:6705884-6705903 Msa0274870:CDS 30.0%
AGTTCTTGAAAGTTCCAATA+GGG - chr2_3:6705885-6705904 Msa0274870:CDS 30.0%
! TATTGGTGTTCTTGACAATT+TGG - chr2_3:6705922-6705941 Msa0274870:CDS 30.0%
TGTTCTTGACAATTTGGTTA+AGG - chr2_3:6705928-6705947 Msa0274870:CDS 30.0%
!! AAAAATTGGAAGGTACTATG+CGG - chr2_3:6705985-6706004 Msa0274870:CDS 30.0%
!!! GTTGGAAGATTTTTTTGCTA+GGG - chr2_3:6706084-6706103 Msa0274870:CDS 30.0%
GAAAGTGGAAGAATAACACA+GGG + chr2_3:6704931-6704950 None:intergenic 35.0%
TGAAAGTGGAAGAATAACAC+AGG + chr2_3:6704932-6704951 None:intergenic 35.0%
TGAAGAGAAATTGAAGGAGA+GGG + chr2_3:6704982-6705001 None:intergenic 35.0%
!! AATAGGTTGATGAAGTGAGA+AGG + chr2_3:6705011-6705030 None:intergenic 35.0%
TCACTTCATCAACCTATTCA+AGG - chr2_3:6705013-6705032 Msa0274870:CDS 35.0%
! CAACTTGTTCAGATTGTGAA+AGG + chr2_3:6705094-6705113 None:intergenic 35.0%
CTTGCTTCTAAATGTTGATG+GGG + chr2_3:6705123-6705142 None:intergenic 35.0%
! GATGTTAATGTCTTGGTAGT+AGG - chr2_3:6705152-6705171 Msa0274870:CDS 35.0%
! GTGAAAGAGTTGATTCAAAG+AGG - chr2_3:6705203-6705222 Msa0274870:CDS 35.0%
TCTTGTCTTGCTAGTAGAAA+TGG - chr2_3:6705398-6705417 Msa0274870:CDS 35.0%
!! AGAATAGTCTTTTAGCTGGT+AGG - chr2_3:6705462-6705481 Msa0274870:CDS 35.0%
AAACTCTTAAAAAACGCGGT+CGG + chr2_3:6705635-6705654 None:intergenic 35.0%
!!! ACCGCGTTTTTTAAGAGTTT+AGG - chr2_3:6705635-6705654 Msa0274870:CDS 35.0%
!!! GCGTTTTTTAAGAGTTTAGG+TGG - chr2_3:6705638-6705657 Msa0274870:CDS 35.0%
!! TTTAGGTGGTCAAGTTGATT+TGG - chr2_3:6705652-6705671 Msa0274870:CDS 35.0%
!! CAAGTTGATTTGGTGAAAGA+TGG - chr2_3:6705662-6705681 Msa0274870:CDS 35.0%
GCCAAATCTTGTTCACTTAT+AGG + chr2_3:6705734-6705753 None:intergenic 35.0%
! TGTTGATTGTGTAATGAGTG+AGG - chr2_3:6705763-6705782 Msa0274870:CDS 35.0%
AAAATTTCCCCTTGTTCCAA+TGG + chr2_3:6705839-6705858 None:intergenic 35.0%
GAAAGTTCCAATAGGGATTA+TGG - chr2_3:6705892-6705911 Msa0274870:CDS 35.0%
GCAAAATCCATAATCCCTAT+TGG + chr2_3:6705902-6705921 None:intergenic 35.0%
!! GGGATTATGGATTTTGCTAT+TGG - chr2_3:6705905-6705924 Msa0274870:CDS 35.0%
! GGTTAAGGTATTTCCTTCAT+TGG - chr2_3:6705943-6705962 Msa0274870:CDS 35.0%
CTGAGTTTGGAAAAATTGGA+AGG - chr2_3:6705975-6705994 Msa0274870:CDS 35.0%
!!! GGCTGAAAGTATGTTGATTT+TGG - chr2_3:6706006-6706025 Msa0274870:CDS 35.0%
! TTGATTTTGGATCCTGATAC+TGG - chr2_3:6706019-6706038 Msa0274870:CDS 35.0%
!!! CGTTGGAAGATTTTTTTGCT+AGG - chr2_3:6706083-6706102 Msa0274870:CDS 35.0%
GAAAGTGGAAGAATAACACA+GGG + chr2_3:6704931-6704950 None:intergenic 35.0%
TGAAAGTGGAAGAATAACAC+AGG + chr2_3:6704932-6704951 None:intergenic 35.0%
TGAAGAGAAATTGAAGGAGA+GGG + chr2_3:6704982-6705001 None:intergenic 35.0%
!! AATAGGTTGATGAAGTGAGA+AGG + chr2_3:6705011-6705030 None:intergenic 35.0%
TCACTTCATCAACCTATTCA+AGG - chr2_3:6705013-6705032 Msa0274870:CDS 35.0%
! CAACTTGTTCAGATTGTGAA+AGG + chr2_3:6705094-6705113 None:intergenic 35.0%
CTTGCTTCTAAATGTTGATG+GGG + chr2_3:6705123-6705142 None:intergenic 35.0%
! GATGTTAATGTCTTGGTAGT+AGG - chr2_3:6705152-6705171 Msa0274870:CDS 35.0%
! GTGAAAGAGTTGATTCAAAG+AGG - chr2_3:6705203-6705222 Msa0274870:CDS 35.0%
TCTTGTCTTGCTAGTAGAAA+TGG - chr2_3:6705398-6705417 Msa0274870:CDS 35.0%
!! AGAATAGTCTTTTAGCTGGT+AGG - chr2_3:6705462-6705481 Msa0274870:CDS 35.0%
AAACTCTTAAAAAACGCGGT+CGG + chr2_3:6705635-6705654 None:intergenic 35.0%
!!! ACCGCGTTTTTTAAGAGTTT+AGG - chr2_3:6705635-6705654 Msa0274870:CDS 35.0%
!!! GCGTTTTTTAAGAGTTTAGG+TGG - chr2_3:6705638-6705657 Msa0274870:CDS 35.0%
!! TTTAGGTGGTCAAGTTGATT+TGG - chr2_3:6705652-6705671 Msa0274870:CDS 35.0%
!! CAAGTTGATTTGGTGAAAGA+TGG - chr2_3:6705662-6705681 Msa0274870:CDS 35.0%
GCCAAATCTTGTTCACTTAT+AGG + chr2_3:6705734-6705753 None:intergenic 35.0%
! TGTTGATTGTGTAATGAGTG+AGG - chr2_3:6705763-6705782 Msa0274870:CDS 35.0%
AAAATTTCCCCTTGTTCCAA+TGG + chr2_3:6705839-6705858 None:intergenic 35.0%
GAAAGTTCCAATAGGGATTA+TGG - chr2_3:6705892-6705911 Msa0274870:CDS 35.0%
GCAAAATCCATAATCCCTAT+TGG + chr2_3:6705902-6705921 None:intergenic 35.0%
!! GGGATTATGGATTTTGCTAT+TGG - chr2_3:6705905-6705924 Msa0274870:CDS 35.0%
! GGTTAAGGTATTTCCTTCAT+TGG - chr2_3:6705943-6705962 Msa0274870:CDS 35.0%
CTGAGTTTGGAAAAATTGGA+AGG - chr2_3:6705975-6705994 Msa0274870:CDS 35.0%
!!! GGCTGAAAGTATGTTGATTT+TGG - chr2_3:6706006-6706025 Msa0274870:CDS 35.0%
! TTGATTTTGGATCCTGATAC+TGG - chr2_3:6706019-6706038 Msa0274870:CDS 35.0%
!!! CGTTGGAAGATTTTTTTGCT+AGG - chr2_3:6706083-6706102 Msa0274870:CDS 35.0%
AGAAATTGAAGGAGAGGGTT+TGG + chr2_3:6704977-6704996 None:intergenic 40.0%
GTGAAGAGAAATTGAAGGAG+AGG + chr2_3:6704983-6705002 None:intergenic 40.0%
AGGGTGTGAAGAGAAATTGA+AGG + chr2_3:6704988-6705007 None:intergenic 40.0%
! TCTTGGTAGTAGGTTCAACT+GGG - chr2_3:6705162-6705181 Msa0274870:CDS 40.0%
GTAGGTTCAACTGGGTATAT+AGG - chr2_3:6705170-6705189 Msa0274870:CDS 40.0%
GCAATAGCTAGAGAAAAGAG+TGG - chr2_3:6705239-6705258 Msa0274870:CDS 40.0%
GATGAGGATTTGAAGAACCT+AGG - chr2_3:6705353-6705372 Msa0274870:CDS 40.0%
GATTTGAAGAACCTAGGTGT+TGG - chr2_3:6705359-6705378 Msa0274870:CDS 40.0%
CAACATCAAAACCAACACCT+AGG + chr2_3:6705373-6705392 None:intergenic 40.0%
TGTCTTGCTAGTAGAAATGG+AGG - chr2_3:6705401-6705420 Msa0274870:CDS 40.0%
GTCTTGCTAGTAGAAATGGA+GGG - chr2_3:6705402-6705421 Msa0274870:CDS 40.0%
TCTTGCTAGTAGAAATGGAG+GGG - chr2_3:6705403-6705422 Msa0274870:CDS 40.0%
TAGTAGAAATGGAGGGGTTA+AGG - chr2_3:6705409-6705428 Msa0274870:CDS 40.0%
!! CTTTTAGCTGGTAGGAAACT+TGG - chr2_3:6705470-6705489 Msa0274870:CDS 40.0%
CCATCACCAAACATCACATA+AGG + chr2_3:6705692-6705711 None:intergenic 40.0%
! CCTTATGTGATGTTTGGTGA+TGG - chr2_3:6705689-6705708 Msa0274870:CDS 40.0%
! ATTTTACCTATTGGAGGACC+AGG - chr2_3:6705800-6705819 Msa0274870:CDS 40.0%
! TTTTACCTATTGGAGGACCA+GGG - chr2_3:6705801-6705820 Msa0274870:CDS 40.0%
!! CATTGACTCCATTGGAACAA+GGG - chr2_3:6705828-6705847 Msa0274870:CDS 40.0%
! ATTGACTCCATTGGAACAAG+GGG - chr2_3:6705829-6705848 Msa0274870:CDS 40.0%
GCTGCTGAGTTTGGAAAAAT+TGG - chr2_3:6705971-6705990 Msa0274870:CDS 40.0%
AACGTATCATTCCCATAGCT+CGG + chr2_3:6706067-6706086 None:intergenic 40.0%
!!! ATTTTTTTGCTAGGGTGCTC+AGG - chr2_3:6706092-6706111 Msa0274870:CDS 40.0%
!!! TTTTTTTGCTAGGGTGCTCA+GGG - chr2_3:6706093-6706112 Msa0274870:CDS 40.0%
AGAAATTGAAGGAGAGGGTT+TGG + chr2_3:6704977-6704996 None:intergenic 40.0%
GTGAAGAGAAATTGAAGGAG+AGG + chr2_3:6704983-6705002 None:intergenic 40.0%
AGGGTGTGAAGAGAAATTGA+AGG + chr2_3:6704988-6705007 None:intergenic 40.0%
! TCTTGGTAGTAGGTTCAACT+GGG - chr2_3:6705162-6705181 Msa0274870:CDS 40.0%
GTAGGTTCAACTGGGTATAT+AGG - chr2_3:6705170-6705189 Msa0274870:CDS 40.0%
GCAATAGCTAGAGAAAAGAG+TGG - chr2_3:6705239-6705258 Msa0274870:CDS 40.0%
GATGAGGATTTGAAGAACCT+AGG - chr2_3:6705353-6705372 Msa0274870:CDS 40.0%
GATTTGAAGAACCTAGGTGT+TGG - chr2_3:6705359-6705378 Msa0274870:CDS 40.0%
CAACATCAAAACCAACACCT+AGG + chr2_3:6705373-6705392 None:intergenic 40.0%
TGTCTTGCTAGTAGAAATGG+AGG - chr2_3:6705401-6705420 Msa0274870:CDS 40.0%
GTCTTGCTAGTAGAAATGGA+GGG - chr2_3:6705402-6705421 Msa0274870:CDS 40.0%
TCTTGCTAGTAGAAATGGAG+GGG - chr2_3:6705403-6705422 Msa0274870:CDS 40.0%
TAGTAGAAATGGAGGGGTTA+AGG - chr2_3:6705409-6705428 Msa0274870:CDS 40.0%
!! CTTTTAGCTGGTAGGAAACT+TGG - chr2_3:6705470-6705489 Msa0274870:CDS 40.0%
CCATCACCAAACATCACATA+AGG + chr2_3:6705692-6705711 None:intergenic 40.0%
! CCTTATGTGATGTTTGGTGA+TGG - chr2_3:6705689-6705708 Msa0274870:CDS 40.0%
! ATTTTACCTATTGGAGGACC+AGG - chr2_3:6705800-6705819 Msa0274870:CDS 40.0%
! TTTTACCTATTGGAGGACCA+GGG - chr2_3:6705801-6705820 Msa0274870:CDS 40.0%
!! CATTGACTCCATTGGAACAA+GGG - chr2_3:6705828-6705847 Msa0274870:CDS 40.0%
! ATTGACTCCATTGGAACAAG+GGG - chr2_3:6705829-6705848 Msa0274870:CDS 40.0%
GCTGCTGAGTTTGGAAAAAT+TGG - chr2_3:6705971-6705990 Msa0274870:CDS 40.0%
AACGTATCATTCCCATAGCT+CGG + chr2_3:6706067-6706086 None:intergenic 40.0%
!!! ATTTTTTTGCTAGGGTGCTC+AGG - chr2_3:6706092-6706111 Msa0274870:CDS 40.0%
!!! TTTTTTTGCTAGGGTGCTCA+GGG - chr2_3:6706093-6706112 Msa0274870:CDS 40.0%
!! AGGGTTTGGTGTTTGAGTGA+GGG + chr2_3:6704963-6704982 None:intergenic 45.0%
!! GGTTGATGAAGTGAGAAGGA+GGG + chr2_3:6705007-6705026 None:intergenic 45.0%
!! AGGTTGATGAAGTGAGAAGG+AGG + chr2_3:6705008-6705027 None:intergenic 45.0%
! GTCTTGGTAGTAGGTTCAAC+TGG - chr2_3:6705161-6705180 Msa0274870:CDS 45.0%
ATGGAGGGGTTAAGGATTCA+TGG - chr2_3:6705417-6705436 Msa0274870:CDS 45.0%
!! GCTTGAGGATGAGTTGGTAA+AGG - chr2_3:6705568-6705587 Msa0274870:CDS 45.0%
!! GGATGAGTTGGTAAAGGAAG+CGG - chr2_3:6705574-6705593 Msa0274870:CDS 45.0%
AGGAAGCGGAGAAAGATGAT+AGG - chr2_3:6705588-6705607 Msa0274870:CDS 45.0%
! GGGAAGCCTTATGTGATGTT+TGG - chr2_3:6705683-6705702 Msa0274870:CDS 45.0%
!! GCATTGACTCCATTGGAACA+AGG - chr2_3:6705827-6705846 Msa0274870:CDS 45.0%
TCAGCAGCATCTTCCAATGA+AGG + chr2_3:6705959-6705978 None:intergenic 45.0%
TTGGAAGATGCTGCTGAGTT+TGG - chr2_3:6705962-6705981 Msa0274870:CDS 45.0%
GAGCTATGGGAATGATACGT+TGG - chr2_3:6706066-6706085 Msa0274870:CDS 45.0%
!! AGGGTTTGGTGTTTGAGTGA+GGG + chr2_3:6704963-6704982 None:intergenic 45.0%
!! GGTTGATGAAGTGAGAAGGA+GGG + chr2_3:6705007-6705026 None:intergenic 45.0%
!! AGGTTGATGAAGTGAGAAGG+AGG + chr2_3:6705008-6705027 None:intergenic 45.0%
! GTCTTGGTAGTAGGTTCAAC+TGG - chr2_3:6705161-6705180 Msa0274870:CDS 45.0%
ATGGAGGGGTTAAGGATTCA+TGG - chr2_3:6705417-6705436 Msa0274870:CDS 45.0%
!! GCTTGAGGATGAGTTGGTAA+AGG - chr2_3:6705568-6705587 Msa0274870:CDS 45.0%
!! GGATGAGTTGGTAAAGGAAG+CGG - chr2_3:6705574-6705593 Msa0274870:CDS 45.0%
AGGAAGCGGAGAAAGATGAT+AGG - chr2_3:6705588-6705607 Msa0274870:CDS 45.0%
! GGGAAGCCTTATGTGATGTT+TGG - chr2_3:6705683-6705702 Msa0274870:CDS 45.0%
!! GCATTGACTCCATTGGAACA+AGG - chr2_3:6705827-6705846 Msa0274870:CDS 45.0%
TCAGCAGCATCTTCCAATGA+AGG + chr2_3:6705959-6705978 None:intergenic 45.0%
TTGGAAGATGCTGCTGAGTT+TGG - chr2_3:6705962-6705981 Msa0274870:CDS 45.0%
GAGCTATGGGAATGATACGT+TGG - chr2_3:6706066-6706085 Msa0274870:CDS 45.0%
! TGAGGGGTGTGTGATGAAAG+TGG + chr2_3:6704946-6704965 None:intergenic 50.0%
!! GGGTTTGGTGTTTGAGTGAG+GGG + chr2_3:6704962-6704981 None:intergenic 50.0%
!! GAGGGTTTGGTGTTTGAGTG+AGG + chr2_3:6704964-6704983 None:intergenic 50.0%
GCTGAAGCTTGAGGATGAGT+TGG - chr2_3:6705562-6705581 Msa0274870:CDS 50.0%
AATGGAGTCAATGCCTTCCC+TGG + chr2_3:6705821-6705840 None:intergenic 50.0%
!! AGGGAAGGCATTGACTCCAT+TGG - chr2_3:6705820-6705839 Msa0274870:CDS 50.0%
ATGAGAAGACGCCGAGCTAT+GGG - chr2_3:6706053-6706072 Msa0274870:CDS 50.0%
! TGAGGGGTGTGTGATGAAAG+TGG + chr2_3:6704946-6704965 None:intergenic 50.0%
!! GGGTTTGGTGTTTGAGTGAG+GGG + chr2_3:6704962-6704981 None:intergenic 50.0%
!! GAGGGTTTGGTGTTTGAGTG+AGG + chr2_3:6704964-6704983 None:intergenic 50.0%
GCTGAAGCTTGAGGATGAGT+TGG - chr2_3:6705562-6705581 Msa0274870:CDS 50.0%
AATGGAGTCAATGCCTTCCC+TGG + chr2_3:6705821-6705840 None:intergenic 50.0%
!! AGGGAAGGCATTGACTCCAT+TGG - chr2_3:6705820-6705839 Msa0274870:CDS 50.0%
ATGAGAAGACGCCGAGCTAT+GGG - chr2_3:6706053-6706072 Msa0274870:CDS 50.0%
GCACGCTGAAACTCGAGAAG+AGG + chr2_3:6705539-6705558 None:intergenic 55.0%
ACCTATTGGAGGACCAGGGA+AGG - chr2_3:6705805-6705824 Msa0274870:CDS 55.0%
TCGCTGTACTCGCCAGTATC+AGG + chr2_3:6706034-6706053 None:intergenic 55.0%
GATGAGAAGACGCCGAGCTA+TGG - chr2_3:6706052-6706071 Msa0274870:CDS 55.0%
! TTTGCTAGGGTGCTCAGGGA+AGG - chr2_3:6706097-6706116 Msa0274870:CDS 55.0%
! TTGCTAGGGTGCTCAGGGAA+GGG - chr2_3:6706098-6706117 Msa0274870:CDS 55.0%
GCACGCTGAAACTCGAGAAG+AGG + chr2_3:6705539-6705558 None:intergenic 55.0%
ACCTATTGGAGGACCAGGGA+AGG - chr2_3:6705805-6705824 Msa0274870:CDS 55.0%
TCGCTGTACTCGCCAGTATC+AGG + chr2_3:6706034-6706053 None:intergenic 55.0%
GATGAGAAGACGCCGAGCTA+TGG - chr2_3:6706052-6706071 Msa0274870:CDS 55.0%
! TTTGCTAGGGTGCTCAGGGA+AGG - chr2_3:6706097-6706116 Msa0274870:CDS 55.0%
! TTGCTAGGGTGCTCAGGGAA+GGG - chr2_3:6706098-6706117 Msa0274870:CDS 55.0%
GCGTGCGAAGCTGAAGCTTG+AGG - chr2_3:6705553-6705572 Msa0274870:CDS 60.0%
GCCTTCCCTGGTCCTCCAAT+AGG + chr2_3:6705809-6705828 None:intergenic 60.0%
! TAGGGTGCTCAGGGAAGGGA+TGG - chr2_3:6706102-6706121 Msa0274870:CDS 60.0%
! GGGATGGCTGGTCAAGAGCT+AGG - chr2_3:6706118-6706137 Msa0274870:CDS 60.0%
GCGTGCGAAGCTGAAGCTTG+AGG - chr2_3:6705553-6705572 Msa0274870:CDS 60.0%
GCCTTCCCTGGTCCTCCAAT+AGG + chr2_3:6705809-6705828 None:intergenic 60.0%
! TAGGGTGCTCAGGGAAGGGA+TGG - chr2_3:6706102-6706121 Msa0274870:CDS 60.0%
! GGGATGGCTGGTCAAGAGCT+AGG - chr2_3:6706118-6706137 Msa0274870:CDS 60.0%
GTGCTCAGGGAAGGGATGGC+TGG - chr2_3:6706106-6706125 Msa0274870:CDS 65.0%
GTGCTCAGGGAAGGGATGGC+TGG - chr2_3:6706106-6706125 Msa0274870:CDS 65.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 6704924 6706159 6704924 ID=Msa0274870;Name=Msa0274870
chr2_3 mRNA 6704924 6706159 6704924 ID=Msa0274870-mRNA-1;Parent=Msa0274870;Name=Msa0274870-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|411
chr2_3 exon 6704924 6706159 6704924 ID=Msa0274870-mRNA-1:exon:3191;Parent=Msa0274870-mRNA-1
chr2_3 CDS 6704924 6706159 6704924 ID=Msa0274870-mRNA-1:cds;Parent=Msa0274870-mRNA-1
Gene Sequence

>Msa0274870

ATGTCCCTGTGTTATTCTTCCACTTTCATCACACACCCCTCACTCAAACACCAAACCCTCTCCTTCAATTTCTCTTCACACCCTCCTTCTCACTTCATCAACCTATTCAAGGTAAAATCACACAGACCCATTAAGTATAACAAACAAAAATTGAAACTTTATGCATCCCTTTCACAATCTGAACAAGTTGAAACGACCCCATCAACATTTAGAAGCAAGAATCCAAAAGATGTTAATGTCTTGGTAGTAGGTTCAACTGGGTATATAGGAAAATTTGTAGTGAAAGAGTTGATTCAAAGAGGGTTTAATGTTACTGCAATAGCTAGAGAAAAGAGTGGAATAAAGGGTAGCATTGATAAAGAAACAACATTGAATGAGTTAAAAGGTGCTAATGTGTGTTTCTCTGATGTGACAAATTTGGATGTTTTTGATGAGGATTTGAAGAACCTAGGTGTTGGTTTTGATGTTGTTGTGTCTTGTCTTGCTAGTAGAAATGGAGGGGTTAAGGATTCATGGAAGATTGATTATGAAGCTACTAAGAATAGTCTTTTAGCTGGTAGGAAACTTGGTGCTTCTCATTTTGTATTGCTTTCGGCAATTTGTGTTCAGAAGCCTCTTCTCGAGTTTCAGCGTGCGAAGCTGAAGCTTGAGGATGAGTTGGTAAAGGAAGCGGAGAAAGATGATAGGTTTAGTTATAGTATAGTGAGGCCGACCGCGTTTTTTAAGAGTTTAGGTGGTCAAGTTGATTTGGTGAAAGATGGGAAGCCTTATGTGATGTTTGGTGATGGAAAGTTGTGTGCTTGTAAACCTATAAGTGAACAAGATTTGGCTTCTTTTATTGTTGATTGTGTAATGAGTGAGGATAAAATTAACAAGATTTTACCTATTGGAGGACCAGGGAAGGCATTGACTCCATTGGAACAAGGGGAAATTTTGTTTAAGCTTTTAGGGAAGGAGCCCAAGTTCTTGAAAGTTCCAATAGGGATTATGGATTTTGCTATTGGTGTTCTTGACAATTTGGTTAAGGTATTTCCTTCATTGGAAGATGCTGCTGAGTTTGGAAAAATTGGAAGGTACTATGCGGCTGAAAGTATGTTGATTTTGGATCCTGATACTGGCGAGTACAGCGATGAGAAGACGCCGAGCTATGGGAATGATACGTTGGAAGATTTTTTTGCTAGGGTGCTCAGGGAAGGGATGGCTGGTCAAGAGCTAGGTGAGCAAACAATATTTTAA

Protein sequence

>Msa0274870

MSLCYSSTFITHPSLKHQTLSFNFSSHPPSHFINLFKVKSHRPIKYNKQKLKLYASLSQSEQVETTPSTFRSKNPKDVNVLVVGSTGYIGKFVVKELIQRGFNVTAIAREKSGIKGSIDKETTLNELKGANVCFSDVTNLDVFDEDLKNLGVGFDVVVSCLASRNGGVKDSWKIDYEATKNSLLAGRKLGASHFVLLSAICVQKPLLEFQRAKLKLEDELVKEAEKDDRFSYSIVRPTAFFKSLGGQVDLVKDGKPYVMFGDGKLCACKPISEQDLASFIVDCVMSEDKINKILPIGGPGKALTPLEQGEILFKLLGKEPKFLKVPIGIMDFAIGVLDNLVKVFPSLEDAAEFGKIGRYYAAESMLILDPDTGEYSDEKTPSYGNDTLEDFFARVLREGMAGQELGEQTIF*