AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0121420


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0121420 MtrunA17_Chr1g0180501 93.697 238 11 3 1 234 1 238 9.15e-149 414
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0121420 AT2G36885.1 86.957 161 21 0 73 233 95 255 1.62e-98 288
Msa0121420 AT2G36885.2 86.957 161 20 1 73 233 95 254 6.16e-97 283

Find 84 sgRNAs with CRISPR-Local

Find 393 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGTGGTTATGGTACCTATC+TGG 0.201420 1_3:-47242198 Msa0121420:CDS
CTAAATTTACAACAATTAAA+TGG 0.235242 1_3:-47236089 Msa0121420:intron
CATGCCGTTACAGGCGTTAT+TGG 0.237578 1_3:-47241521 Msa0121420:CDS
GCCTGACTGGCTTGTACATT+GGG 0.244545 1_3:-47242361 Msa0121420:CDS
TTGCGCCAAGAGAGGAAATT+TGG 0.266177 1_3:+47242667 None:intergenic
TTCTTTGCTCTTGGAGCTAC+TGG 0.272209 1_3:-47241727 Msa0121420:CDS
CGCGAATTATGAAATGAAAT+TGG 0.301103 1_3:+47242690 None:intergenic
TGGTGTTGATTCTATGGATT+GGG 0.307901 1_3:+47242602 None:intergenic
TACAGTCCTCATGCCGTTAC+AGG 0.314786 1_3:-47241530 Msa0121420:intron
GCTGCCCTTGGACTTCAATT+AGG 0.329493 1_3:-47240796 Msa0121420:CDS
GGGATGCAAGTCCTTGGCCT+TGG 0.338833 1_3:+47241774 None:intergenic
CCATTCATTATTCTACGAAA+TGG 0.368463 1_3:-47242760 Msa0121420:exon
GATGGTCCTTTGATAAATTA+CGG 0.370556 1_3:+47240476 None:intergenic
TCGCGCCAAATTTCCTCTCT+TGG 0.371911 1_3:-47242672 Msa0121420:CDS
TCTGTATCTAGTTGCGTTCA+CGG 0.380800 1_3:+47240395 None:intergenic
TATATTACCTTCACTGTTTG+AGG 0.381332 1_3:-47241474 Msa0121420:intron
TGGACGGAGATTCATGATAA+TGG 0.384959 1_3:+47242719 None:intergenic
TTTCTTGTCCATGCTGCCCT+TGG 0.385296 1_3:-47240808 Msa0121420:CDS
TAAATATTTGTAGGAGGAAA+AGG 0.386374 1_3:-47241797 Msa0121420:intron
TGCCTGACTGGCTTGTACAT+TGG 0.392543 1_3:-47242362 Msa0121420:CDS
TTGGTGTTGATTCTATGGAT+TGG 0.404513 1_3:+47242601 None:intergenic
CTATGGATTGGGGTGAGTCT+TGG 0.408490 1_3:+47242613 None:intergenic
CCATGAACATTTCTTAATCC+AGG 0.412779 1_3:+47240859 None:intergenic
AAGAAATGTTCATGGCATCT+TGG 0.414269 1_3:-47240851 Msa0121420:CDS
GGTGGTTATGGTACCTATCT+GGG 0.422512 1_3:-47242197 Msa0121420:CDS
CCCCAATGTACAAGCCAGTC+AGG 0.431799 1_3:+47242360 None:intergenic
AAATTACGGATAATTCTCAT+TGG 0.438433 1_3:+47240490 None:intergenic
AATGATATGCAGGGAAATCC+TGG 0.444461 1_3:-47240877 Msa0121420:intron
ATTTAACTAACCATGTTGGC+AGG 0.445888 1_3:+47242333 None:intergenic
TTGGGGTGAGTCTTGGTTTG+TGG 0.447264 1_3:+47242620 None:intergenic
TGAAATGAAATTGGTGAAGA+TGG 0.457610 1_3:+47242699 None:intergenic
AGAAATGTTCATGGCATCTT+GGG 0.463806 1_3:-47240850 Msa0121420:CDS
AACATACCAGCTAATAGCTT+GGG 0.466091 1_3:+47241754 None:intergenic
GAAGCTGTATTTATGAACTA+AGG 0.469918 1_3:+47240773 None:intergenic
TCGAATGCGAAAACCCAGAT+AGG 0.472079 1_3:+47242184 None:intergenic
CCTGGATTAAGAAATGTTCA+TGG 0.473102 1_3:-47240859 Msa0121420:CDS
CCATTTCGTAGAATAATGAA+TGG 0.475222 1_3:+47242760 None:intergenic
ACAACATTAATAACTTGTAA+AGG 0.475649 1_3:+47240368 None:intergenic
TACGCCGCTGCTCTCTTACC+TGG 0.482775 1_3:-47242534 Msa0121420:CDS
AATTACGGATAATTCTCATT+GGG 0.484475 1_3:+47240491 None:intergenic
TTTGCTCTTGGAGCTACTGG+TGG 0.495588 1_3:-47241724 Msa0121420:CDS
AGTCGTTGAATCTGCCTGAC+TGG 0.497666 1_3:-47242374 Msa0121420:CDS
TGTGACATATATGCATTGTA+AGG 0.509944 1_3:+47235984 None:intergenic
AAACATACCAGCTAATAGCT+TGG 0.513187 1_3:+47241753 None:intergenic
TGGCGTGACATTTGAGGTGG+AGG 0.520546 1_3:+47242640 None:intergenic
TAGCTTGGGATGCAAGTCCT+TGG 0.521656 1_3:+47241768 None:intergenic
ACTACAATTGCTGGTTGACT+TGG 0.525375 1_3:-47240553 Msa0121420:three_prime_UTR
TCTATTGTTGTGACTTGTGA+TGG 0.536724 1_3:+47242826 None:intergenic
TTGCATCCCAAGCTATTAGC+TGG 0.539795 1_3:-47241760 Msa0121420:CDS
GGTTTGTGGCGTGACATTTG+AGG 0.543470 1_3:+47242634 None:intergenic
AAGATCAAGATGAGAGTGGA+AGG 0.544984 1_3:+47242882 None:intergenic
GTTGAAACCACGTGTAAAAG+TGG 0.555349 1_3:-47242945 Msa0121420:five_prime_UTR
TAAGGCCTAATTGAAGTCCA+AGG 0.569878 1_3:+47240791 None:intergenic
AATTATCCGTAATTTATCAA+AGG 0.577881 1_3:-47240482 Msa0121420:three_prime_UTR
GGAGGAAAAGGCCAAGGCCA+AGG 0.580312 1_3:-47241785 Msa0121420:CDS
GAGGCGAGTTGCGCCAAGAG+AGG 0.581588 1_3:+47242659 None:intergenic
ATTTATTTAACTAACCATGT+TGG 0.587938 1_3:+47242329 None:intergenic
TTGGGGTCACCCTGCCAACA+TGG 0.588484 1_3:-47242343 Msa0121420:intron
GGTGTTGATTCTATGGATTG+GGG 0.590362 1_3:+47242603 None:intergenic
AAGGCCAATAACGCCTGTAA+CGG 0.591757 1_3:+47241517 None:intergenic
AAATACAGCTTCAATTGATG+AGG 0.597989 1_3:-47240762 Msa0121420:intron
TAGCTGGTGTACCACATCAT+CGG 0.598201 1_3:+47242157 None:intergenic
ATAACTTTAATTATATAGTG+TGG 0.598763 1_3:-47236016 Msa0121420:three_prime_UTR
CATGGTATCAACGCTACAGA+TGG 0.599896 1_3:+47240458 None:intergenic
TTGTGGCGTGACATTTGAGG+TGG 0.601719 1_3:+47242637 None:intergenic
TTTAACTAACCATGTTGGCA+GGG 0.602404 1_3:+47242334 None:intergenic
ATTGAAGTCCAAGGGCAGCA+TGG 0.606273 1_3:+47240800 None:intergenic
ACCATTACCTCAAACAGTGA+AGG 0.611894 1_3:+47241467 None:intergenic
ATAACGCCTGTAACGGCATG+AGG 0.613254 1_3:+47241524 None:intergenic
GACTTGACTATCTCAACGAA+AGG 0.613541 1_3:+47242393 None:intergenic
TAGTAAGATCAAGATGAGAG+TGG 0.614576 1_3:+47242878 None:intergenic
TCTGTATTGTCAACAAAGCA+AGG 0.616586 1_3:+47241498 None:intergenic
TTTGTAGGAGGAAAAGGCCA+AGG 0.623008 1_3:-47241791 Msa0121420:intron
AAGGCCTAATTGAAGTCCAA+GGG 0.629303 1_3:+47240792 None:intergenic
ATGAAATTGGTGAAGATGGA+CGG 0.635618 1_3:+47242703 None:intergenic
CATTCGATATTCCGATGATG+TGG 0.635671 1_3:-47242168 Msa0121420:intron
AGATCAAGATGAGAGTGGAA+GGG 0.640373 1_3:+47242883 None:intergenic
GCGGCGTAAAGTAAAGACAA+TGG 0.650565 1_3:+47242549 None:intergenic
AAGATGAGAGTGGAAGGGCG+AGG 0.662994 1_3:+47242888 None:intergenic
CCTGACTGGCTTGTACATTG+GGG 0.664667 1_3:-47242360 Msa0121420:CDS
GAAACCACGTGTAAAAGTGG+AGG 0.678749 1_3:-47242942 Msa0121420:five_prime_UTR
GCCGCTGCTCTCTTACCTGG+AGG 0.685113 1_3:-47242531 Msa0121420:intron
ACCTCCAGGTAAGAGAGCAG+CGG 0.686187 1_3:+47242530 None:intergenic
ACGGAGATTCATGATAATGG+AGG 0.689473 1_3:+47242722 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCATTTTCTTAAATTATAAT+TGG - chr1_3:47237741-47237760 Msa0121420:intron 10.0%
!!! TTTATATGTTGATTATTATT+TGG + chr1_3:47238575-47238594 None:intergenic 10.0%
!! ATTAATTATAATATTTGACT+TGG + chr1_3:47239241-47239260 None:intergenic 10.0%
!! TGTAAAAATATATATTTATG+CGG + chr1_3:47240604-47240623 None:intergenic 10.0%
!!! TTAAATCATATTTTAAATCA+AGG - chr1_3:47240899-47240918 Msa0121420:intron 10.0%
!!! TTTATATGTTGATTATTATT+TGG + chr1_3:47238575-47238594 None:intergenic 10.0%
!! ATTAATTATAATATTTGACT+TGG + chr1_3:47239241-47239260 None:intergenic 10.0%
!!! TTTGAAATGAATTAGAATTA+AGG + chr1_3:47236407-47236426 None:intergenic 15.0%
!! ATATCTTGTTAAATATTTGT+AGG - chr1_3:47237088-47237107 Msa0121420:intron 15.0%
!! GAATTAACAAATTATCTAAT+AGG + chr1_3:47237301-47237320 None:intergenic 15.0%
!!! ATTTTAGAGTTTTAATTAAC+AGG - chr1_3:47238209-47238228 Msa0121420:intron 15.0%
!! GAATTATTTAAACAAAATGA+TGG + chr1_3:47238250-47238269 None:intergenic 15.0%
!! TTTGTTTAAATAATTCAGAT+TGG - chr1_3:47238254-47238273 Msa0121420:intron 15.0%
!!! TTTAAACTTTTGAAATATGT+GGG + chr1_3:47239374-47239393 None:intergenic 15.0%
!!! TTTTAAACTTTTGAAATATG+TGG + chr1_3:47239375-47239394 None:intergenic 15.0%
!! GTTTAAAAGAAATTAGAAAA+AGG - chr1_3:47239387-47239406 Msa0121420:intron 15.0%
!!! AAATTCATTAAAAGCTTTAT+AGG - chr1_3:47239753-47239772 Msa0121420:intron 15.0%
!! TATTTGTAGATTTATTATAC+AGG - chr1_3:47240223-47240242 Msa0121420:intron 15.0%
!!! TACAAAACTTTATTTATTGT+GGG + chr1_3:47240279-47240298 None:intergenic 15.0%
!!! AATTAATTATCTTTTCCAAT+GGG + chr1_3:47240517-47240536 None:intergenic 15.0%
!!! AAATTAATTATCTTTTCCAA+TGG + chr1_3:47240518-47240537 None:intergenic 15.0%
!!! TTTTTTTTTTCAAATCTACT+TGG - chr1_3:47240535-47240554 Msa0121420:three_prime_UTR 15.0%
!! AGGAAAAAAAAATGTATTAT+GGG + chr1_3:47240676-47240695 None:intergenic 15.0%
!! AAGGAAAAAAAAATGTATTA+TGG + chr1_3:47240677-47240696 None:intergenic 15.0%
!!! TTTTATTGAGAAAATTATGA+AGG + chr1_3:47240696-47240715 None:intergenic 15.0%
!!! TAATTTTATTTTGGAACAAA+TGG + chr1_3:47241621-47241640 None:intergenic 15.0%
!!! ATCATGTTTATTTGAAATAT+TGG + chr1_3:47241834-47241853 None:intergenic 15.0%
!!! TTTTTTAAATTGACATTTAC+AGG + chr1_3:47241926-47241945 None:intergenic 15.0%
!!! AATATTTTACAACAATCTTA+AGG + chr1_3:47241987-47242006 None:intergenic 15.0%
!! CTAAATTTACAACAATTAAA+TGG - chr1_3:47242805-47242824 Msa0121420:five_prime_UTR 15.0%
!! ATAACTTTAATTATATAGTG+TGG - chr1_3:47242878-47242897 Msa0121420:five_prime_UTR 15.0%
!! ATTTATTTAACTAACCATGT+TGG + chr1_3:47236568-47236587 None:intergenic 20.0%
!!! AGTTATTTACTTTTGTTTTG+TGG + chr1_3:47236855-47236874 None:intergenic 20.0%
!! AATATAGAAGCAAACTTATA+TGG - chr1_3:47236989-47237008 Msa0121420:intron 20.0%
!! GGTAAAATAATTAAACTTGA+TGG - chr1_3:47237010-47237029 Msa0121420:intron 20.0%
!! TAACAAGATATGAAATACTT+GGG + chr1_3:47237079-47237098 None:intergenic 20.0%
!! TTAACAAGATATGAAATACT+TGG + chr1_3:47237080-47237099 None:intergenic 20.0%
!!! TTTTCCTATTTTTTAATCCA+TGG - chr1_3:47237483-47237502 Msa0121420:intron 20.0%
!! ATTGAATATATAACCACATA+TGG + chr1_3:47237716-47237735 None:intergenic 20.0%
!!! GAGGTTATTTATTTTAGTTA+TGG - chr1_3:47238151-47238170 Msa0121420:intron 20.0%
!!! TAAAATGAAGTTTTAAGAAC+CGG + chr1_3:47238195-47238214 None:intergenic 20.0%
!! AATTATCCGTAATTTATCAA+AGG - chr1_3:47238412-47238431 Msa0121420:intron 20.0%
!!! TAATTTTGTGTTTGATTACA+TGG + chr1_3:47238457-47238476 None:intergenic 20.0%
!!! ACAACATTAATAACTTGTAA+AGG + chr1_3:47238529-47238548 None:intergenic 20.0%
!! CTATATATTATTGTATGACT+TGG - chr1_3:47238658-47238677 Msa0121420:intron 20.0%
!!! TATCAAGAAGAAATATTTTC+AGG - chr1_3:47238861-47238880 Msa0121420:intron 20.0%
!!! TCAGGAAAAACAATTTTTTT+TGG + chr1_3:47238998-47239017 None:intergenic 20.0%
!!! CTCATTTGAAACAATAAATT+GGG + chr1_3:47239174-47239193 None:intergenic 20.0%
!!! TCTCATTTGAAACAATAAAT+TGG + chr1_3:47239175-47239194 None:intergenic 20.0%
!!! TTAAACTTTTGAAATATGTG+GGG + chr1_3:47239373-47239392 None:intergenic 20.0%
!! TGTTAAGTATTATCATTCTA+GGG + chr1_3:47239476-47239495 None:intergenic 20.0%
!!! GTACAAAACTTTATTTATTG+TGG + chr1_3:47240280-47240299 None:intergenic 20.0%
!! AAATATAACTACTCTATATG+TGG - chr1_3:47240444-47240463 Msa0121420:three_prime_UTR 20.0%
!!! ATTAATTATCTTTTCCAATG+GGG + chr1_3:47240516-47240535 None:intergenic 20.0%
!! GTTGAATAAAATTTAGAAAG+AGG + chr1_3:47240859-47240878 None:intergenic 20.0%
!! TAGTAGTTGTTTATAATGAT+TGG + chr1_3:47241191-47241210 None:intergenic 20.0%
!!! CTAAGTACTTTTTTATCTTT+TGG + chr1_3:47241301-47241320 None:intergenic 20.0%
!!! TTTTAAACAAATTTGCATTG+TGG + chr1_3:47241383-47241402 None:intergenic 20.0%
!!! AGAATAGTTTAAAACTTACA+AGG - chr1_3:47241554-47241573 Msa0121420:intron 20.0%
!! CTATATATTATTGTATGACT+TGG - chr1_3:47238658-47238677 Msa0121420:intron 20.0%
!!! TATCAAGAAGAAATATTTTC+AGG - chr1_3:47238861-47238880 Msa0121420:intron 20.0%
!!! TCAGGAAAAACAATTTTTTT+TGG + chr1_3:47238998-47239017 None:intergenic 20.0%
!!! CTCATTTGAAACAATAAATT+GGG + chr1_3:47239174-47239193 None:intergenic 20.0%
!!! TCTCATTTGAAACAATAAAT+TGG + chr1_3:47239175-47239194 None:intergenic 20.0%
!!! TGTAAGATTGTTTCACTTTT+TGG + chr1_3:47236315-47236334 None:intergenic 25.0%
! ACTAAACTAAACTAAACAGA+TGG - chr1_3:47236456-47236475 Msa0121420:intron 25.0%
! TGATTAATAATCAAAGTAGC+TGG + chr1_3:47236756-47236775 None:intergenic 25.0%
!! TTCTCTTTTAGTACTCTTTT+GGG - chr1_3:47236924-47236943 Msa0121420:intron 25.0%
! TCTTGTTAAATATTTGTAGG+AGG - chr1_3:47237091-47237110 Msa0121420:intron 25.0%
! TAAATATTTGTAGGAGGAAA+AGG - chr1_3:47237097-47237116 Msa0121420:intron 25.0%
! TGTAAATACCTGTCAAAAAT+GGG + chr1_3:47237224-47237243 None:intergenic 25.0%
! ATGTAAATACCTGTCAAAAA+TGG + chr1_3:47237225-47237244 None:intergenic 25.0%
! ATTAACAAGCAATAATCTTC+AGG + chr1_3:47237266-47237285 None:intergenic 25.0%
! ATAAAAACAAGTTAGCTCAA+AGG + chr1_3:47237458-47237477 None:intergenic 25.0%
!! GATTCCATGGATTAAAAAAT+AGG + chr1_3:47237490-47237509 None:intergenic 25.0%
! GATAAATGAGTATCTATCTA+TGG + chr1_3:47237532-47237551 None:intergenic 25.0%
! ACACTTTCAATATAAAGTGT+TGG + chr1_3:47237647-47237666 None:intergenic 25.0%
! AATTACGGATAATTCTCATT+GGG + chr1_3:47238406-47238425 None:intergenic 25.0%
! AAATTACGGATAATTCTCAT+TGG + chr1_3:47238407-47238426 None:intergenic 25.0%
! AAACCAACATAATAGTAAAC+CGG - chr1_3:47238724-47238743 Msa0121420:intron 25.0%
! TTGAAGCATAAAAAGTAAAG+AGG - chr1_3:47238938-47238957 Msa0121420:intron 25.0%
! TGAAGCATAAAAAGTAAAGA+GGG - chr1_3:47238939-47238958 Msa0121420:intron 25.0%
!!! GTTCTATTACTTTTAAGATC+AGG + chr1_3:47239016-47239035 None:intergenic 25.0%
!!! TTAGCTTTTTGAGCATAAAT+AGG - chr1_3:47239061-47239080 Msa0121420:intron 25.0%
!!! TAAACTTTTGAAATATGTGG+GGG + chr1_3:47239372-47239391 None:intergenic 25.0%
! AAATTAGAAAAAGGACTTTC+TGG - chr1_3:47239396-47239415 Msa0121420:intron 25.0%
! AATTAGAAAAAGGACTTTCT+GGG - chr1_3:47239397-47239416 Msa0121420:intron 25.0%
! GTGTTAAGTATTATCATTCT+AGG + chr1_3:47239477-47239496 None:intergenic 25.0%
! ATGAATTTCATATCCCTTAT+GGG + chr1_3:47239741-47239760 None:intergenic 25.0%
! AATGAATTTCATATCCCTTA+TGG + chr1_3:47239742-47239761 None:intergenic 25.0%
!!! ATTGCATTATTTTGATGCAA+TGG - chr1_3:47240342-47240361 Msa0121420:intron 25.0%
!! TAGTTATATTTTCCCAATGT+GGG + chr1_3:47240435-47240454 None:intergenic 25.0%
! TATATGTGGATTTATTACTC+AGG - chr1_3:47240458-47240477 Msa0121420:three_prime_UTR 25.0%
!! TTAATTATCTTTTCCAATGG+GGG + chr1_3:47240515-47240534 None:intergenic 25.0%
! ATTGTATTGTTCTAGTACAA+TGG - chr1_3:47240646-47240665 Msa0121420:intron 25.0%
!!! TCTACGAATTGATTTTGATT+GGG + chr1_3:47240818-47240837 None:intergenic 25.0%
! CACTCTATGATACAAAAAAA+TGG - chr1_3:47240964-47240983 Msa0121420:intron 25.0%
! AGTTAATGATTGCTAACTTA+TGG + chr1_3:47241021-47241040 None:intergenic 25.0%
!! AACCTTTGATTTAAAGAGAA+TGG + chr1_3:47241771-47241790 None:intergenic 25.0%
! AAACCAACATAATAGTAAAC+CGG - chr1_3:47238724-47238743 Msa0121420:intron 25.0%
! TTGAAGCATAAAAAGTAAAG+AGG - chr1_3:47238938-47238957 Msa0121420:intron 25.0%
! TGAAGCATAAAAAGTAAAGA+GGG - chr1_3:47238939-47238958 Msa0121420:intron 25.0%
!!! GTTCTATTACTTTTAAGATC+AGG + chr1_3:47239016-47239035 None:intergenic 25.0%
!!! TTAGCTTTTTGAGCATAAAT+AGG - chr1_3:47239061-47239080 Msa0121420:intron 25.0%
!!! ACATGGTATTTATTTTGCAA+CGG + chr1_3:47242601-47242620 None:intergenic 25.0%
CCATTTCGTAGAATAATGAA+TGG + chr1_3:47236137-47236156 None:intergenic 30.0%
CCATTCATTATTCTACGAAA+TGG - chr1_3:47236134-47236153 Msa0121420:intron 30.0%
TGAAATGAAATTGGTGAAGA+TGG + chr1_3:47236198-47236217 None:intergenic 30.0%
CGCGAATTATGAAATGAAAT+TGG + chr1_3:47236207-47236226 None:intergenic 30.0%
!!! ACTTTTTGGTGTTGATTCTA+TGG + chr1_3:47236301-47236320 None:intergenic 30.0%
ACACAGAAGCTATATAAGAA+AGG + chr1_3:47236795-47236814 None:intergenic 30.0%
! GTTCTCTTTTAGTACTCTTT+TGG - chr1_3:47236923-47236942 Msa0121420:intron 30.0%
! ATGTTTTTCTTCTTTGCTCT+TGG - chr1_3:47237158-47237177 Msa0121420:intron 30.0%
TATATTACCTTCACTGTTTG+AGG - chr1_3:47237420-47237439 Msa0121420:intron 30.0%
TAAACCAACATGTTGAACAT+TGG + chr1_3:47237672-47237691 None:intergenic 30.0%
!! ATGTTCAACATGTTGGTTTA+TGG - chr1_3:47237672-47237691 Msa0121420:intron 30.0%
GAATATATAACCACATATGG+TGG + chr1_3:47237713-47237732 None:intergenic 30.0%
TGGTAACAAATTCAATGATG+AGG + chr1_3:47237968-47237987 None:intergenic 30.0%
GAAGCTGTATTTATGAACTA+AGG + chr1_3:47238124-47238143 None:intergenic 30.0%
AAATACAGCTTCAATTGATG+AGG - chr1_3:47238132-47238151 Msa0121420:intron 30.0%
!! GATTTTAGTACTACAATTGC+TGG - chr1_3:47238332-47238351 Msa0121420:intron 30.0%
GATGGTCCTTTGATAAATTA+CGG + chr1_3:47238421-47238440 None:intergenic 30.0%
! GTTGGTTTCATATGAATTGT+CGG + chr1_3:47238712-47238731 None:intergenic 30.0%
!! ATACCGGTTTACTATTATGT+TGG + chr1_3:47238730-47238749 None:intergenic 30.0%
!! CAAGAAGAAATATTTTCAGG+AGG - chr1_3:47238864-47238883 Msa0121420:intron 30.0%
TGAGTCTGACATATAATTCT+GGG + chr1_3:47238896-47238915 None:intergenic 30.0%
ATGAGTCTGACATATAATTC+TGG + chr1_3:47238897-47238916 None:intergenic 30.0%
CGTAAACTCCATATGTAAAT+TGG - chr1_3:47239035-47239054 Msa0121420:intron 30.0%
!!! CACTGGTATTTATTTTGCAA+CGG + chr1_3:47239151-47239170 None:intergenic 30.0%
TTAATCCAGTCAAAATGATG+TGG - chr1_3:47239201-47239220 Msa0121420:intron 30.0%
CTATATGAACCAAAATCACT+TGG - chr1_3:47239519-47239538 Msa0121420:intron 30.0%
AATAAATTTGTGTGCATCGA+GGG + chr1_3:47239985-47240004 None:intergenic 30.0%
AAATAAATTTGTGTGCATCG+AGG + chr1_3:47239986-47240005 None:intergenic 30.0%
CAAATTTATTTCATCCCAAG+AGG - chr1_3:47239995-47240014 Msa0121420:intron 30.0%
! AGTTATATTTTCCCAATGTG+GGG + chr1_3:47240434-47240453 None:intergenic 30.0%
! GTAGTTATATTTTCCCAATG+TGG + chr1_3:47240436-47240455 None:intergenic 30.0%
! TAATTATCTTTTCCAATGGG+GGG + chr1_3:47240514-47240533 None:intergenic 30.0%
TTTATACACATGTGAAGAAG+TGG - chr1_3:47240765-47240784 Msa0121420:exon 30.0%
!! CTCTACGAATTGATTTTGAT+TGG + chr1_3:47240819-47240838 None:intergenic 30.0%
AGGATTTGATCTAACATGTT+TGG + chr1_3:47240934-47240953 None:intergenic 30.0%
! TCATAGAGTGTTATTCTTTG+AGG + chr1_3:47240954-47240973 None:intergenic 30.0%
! GTTGCATGTTTTCATATTAG+CGG + chr1_3:47240999-47241018 None:intergenic 30.0%
AGTGAAACATAGTCAACATT+CGG - chr1_3:47241265-47241284 Msa0121420:intron 30.0%
AGTACTTAGCATATATAGCA+TGG - chr1_3:47241312-47241331 Msa0121420:intron 30.0%
! TGTCATTTATCCATAGAATG+CGG + chr1_3:47241419-47241438 None:intergenic 30.0%
TCAGCACAATATCAAAACTT+AGG - chr1_3:47241480-47241499 Msa0121420:CDS 30.0%
TCAAAACTTAGGAGGTTTAA+AGG - chr1_3:47241491-47241510 Msa0121420:CDS 30.0%
TTAAAATCATCTCTTGAGCA+TGG + chr1_3:47241594-47241613 None:intergenic 30.0%
CACCATTCTCTTTAAATCAA+AGG - chr1_3:47241766-47241785 Msa0121420:CDS 30.0%
! GTTGGTTTCATATGAATTGT+CGG + chr1_3:47238712-47238731 None:intergenic 30.0%
!! ATACCGGTTTACTATTATGT+TGG + chr1_3:47238730-47238749 None:intergenic 30.0%
!! CAAGAAGAAATATTTTCAGG+AGG - chr1_3:47238864-47238883 Msa0121420:intron 30.0%
TGAGTCTGACATATAATTCT+GGG + chr1_3:47238896-47238915 None:intergenic 30.0%
ATGAGTCTGACATATAATTC+TGG + chr1_3:47238897-47238916 None:intergenic 30.0%
CGTAAACTCCATATGTAAAT+TGG - chr1_3:47239035-47239054 Msa0121420:intron 30.0%
TTAATCCAGTCAAAATGATG+TGG - chr1_3:47239201-47239220 Msa0121420:intron 30.0%
TGTGACATATATGCATTGTA+AGG + chr1_3:47242913-47242932 None:intergenic 30.0%
TAGTAAGATCAAGATGAGAG+TGG + chr1_3:47236019-47236038 None:intergenic 35.0%
! TCTATTGTTGTGACTTGTGA+TGG + chr1_3:47236071-47236090 None:intergenic 35.0%
ATGAAATTGGTGAAGATGGA+CGG + chr1_3:47236194-47236213 None:intergenic 35.0%
!! TGGTGTTGATTCTATGGATT+GGG + chr1_3:47236295-47236314 None:intergenic 35.0%
!! TTGGTGTTGATTCTATGGAT+TGG + chr1_3:47236296-47236315 None:intergenic 35.0%
GAATTGTAAAATGTACCTCC+AGG + chr1_3:47236381-47236400 None:intergenic 35.0%
TTTAACTAACCATGTTGGCA+GGG + chr1_3:47236563-47236582 None:intergenic 35.0%
ATTTAACTAACCATGTTGGC+AGG + chr1_3:47236564-47236583 None:intergenic 35.0%
AACATACCAGCTAATAGCTT+GGG + chr1_3:47237143-47237162 None:intergenic 35.0%
AAACATACCAGCTAATAGCT+TGG + chr1_3:47237144-47237163 None:intergenic 35.0%
!! CAGATAAACCCATTTTTGAC+AGG - chr1_3:47237213-47237232 Msa0121420:intron 35.0%
TCTGTATTGTCAACAAAGCA+AGG + chr1_3:47237399-47237418 None:intergenic 35.0%
!! AACACTGATTCAAGATTCCA+TGG + chr1_3:47237503-47237522 None:intergenic 35.0%
ATGAGTATCTATCTATGGTC+AGG + chr1_3:47237527-47237546 None:intergenic 35.0%
CATGGAGACAATAATTGCAT+TGG + chr1_3:47237777-47237796 None:intergenic 35.0%
ATTCAATGATGAGGAAAGAG+TGG + chr1_3:47237959-47237978 None:intergenic 35.0%
ATTCAGGTAACTGAAAGTGA+GGG + chr1_3:47238000-47238019 None:intergenic 35.0%
AGTTACCTGAATGATATGCA+GGG - chr1_3:47238008-47238027 Msa0121420:intron 35.0%
CCATGAACATTTCTTAATCC+AGG + chr1_3:47238038-47238057 None:intergenic 35.0%
CCTGGATTAAGAAATGTTCA+TGG - chr1_3:47238035-47238054 Msa0121420:intron 35.0%
AAGAAATGTTCATGGCATCT+TGG - chr1_3:47238043-47238062 Msa0121420:intron 35.0%
AGAAATGTTCATGGCATCTT+GGG - chr1_3:47238044-47238063 Msa0121420:intron 35.0%
CACGGTTCAAAAACTGTAAT+TGG + chr1_3:47238484-47238503 None:intergenic 35.0%
! GATATTTGGAACTGTGTTGA+TGG + chr1_3:47238684-47238703 None:intergenic 35.0%
GCTAACTGCCAATTTACATA+TGG + chr1_3:47239046-47239065 None:intergenic 35.0%
TGAAACAATAAATTGGGCAC+TGG + chr1_3:47239168-47239187 None:intergenic 35.0%
!! TTTAGCCACATCATTTTGAC+TGG + chr1_3:47239209-47239228 None:intergenic 35.0%
!! AAGTATTATCATTCTAGGGC+TGG + chr1_3:47239472-47239491 None:intergenic 35.0%
TACTTAACACACAGTGAAGT+TGG - chr1_3:47239487-47239506 Msa0121420:intron 35.0%
! TAACATACGCCAAGTGATTT+TGG + chr1_3:47239531-47239550 None:intergenic 35.0%
AAATCATACACCACCCATAA+GGG - chr1_3:47239725-47239744 Msa0121420:intron 35.0%
AATTTCATATCCCTTATGGG+TGG + chr1_3:47239738-47239757 None:intergenic 35.0%
ACCCATATGAACCTTATTCA+TGG - chr1_3:47239895-47239914 Msa0121420:intron 35.0%
CCCATGAATAAGGTTCATAT+GGG + chr1_3:47239899-47239918 None:intergenic 35.0%
CCCATATGAACCTTATTCAT+GGG - chr1_3:47239896-47239915 Msa0121420:intron 35.0%
TCCCATGAATAAGGTTCATA+TGG + chr1_3:47239900-47239919 None:intergenic 35.0%
ATAAATTTGTGTGCATCGAG+GGG + chr1_3:47239984-47240003 None:intergenic 35.0%
CATCCTTGATATACTTCATC+AGG - chr1_3:47240379-47240398 Msa0121420:three_prime_UTR 35.0%
AGACCTGATGAAGTATATCA+AGG + chr1_3:47240385-47240404 None:intergenic 35.0%
! GTTATATTTTCCCAATGTGG+GGG + chr1_3:47240433-47240452 None:intergenic 35.0%
ATTGTGAGTGCATTATCACA+TGG + chr1_3:47240568-47240587 None:intergenic 35.0%
! ATGTGATAATGCACTCACAA+TGG - chr1_3:47240567-47240586 Msa0121420:three_prime_UTR 35.0%
! TGTGATAATGCACTCACAAT+GGG - chr1_3:47240568-47240587 Msa0121420:three_prime_UTR 35.0%
ACTTATATGCTAGAGTCAGT+AGG + chr1_3:47241072-47241091 None:intergenic 35.0%
TGACTCTAGCATATAAGTCA+CGG - chr1_3:47241074-47241093 Msa0121420:intron 35.0%
!! AATATGTTGGTTTGGCATGA+GGG + chr1_3:47241162-47241181 None:intergenic 35.0%
!! TAATATGTTGGTTTGGCATG+AGG + chr1_3:47241163-47241182 None:intergenic 35.0%
TGATTGGTGAGCTAATATGT+TGG + chr1_3:47241175-47241194 None:intergenic 35.0%
CAGACTGCACTTAAATTTCA+AGG - chr1_3:47241223-47241242 Msa0121420:intron 35.0%
! GAATGTTGACTATGTTTCAC+TGG + chr1_3:47241266-47241285 None:intergenic 35.0%
TATAGCATGGATCTACATTG+CGG - chr1_3:47241325-47241344 Msa0121420:intron 35.0%
GCACAATATCAAAACTTAGG+AGG - chr1_3:47241483-47241502 Msa0121420:CDS 35.0%
GATTCTTGAATCAGAGGTAA+CGG - chr1_3:47241665-47241684 Msa0121420:intron 35.0%
! GATATTTGGAACTGTGTTGA+TGG + chr1_3:47238684-47238703 None:intergenic 35.0%
GCTAACTGCCAATTTACATA+TGG + chr1_3:47239046-47239065 None:intergenic 35.0%
GAAACAATAAATTGGGCACA+TGG + chr1_3:47242618-47242637 None:intergenic 35.0%
!! TTTAGCCACATCATTTTGAC+TGG + chr1_3:47239209-47239228 None:intergenic 35.0%
GTTGAAACCACGTGTAAAAG+TGG - chr1_3:47235949-47235968 Msa0121420:three_prime_UTR 40.0%
AGATCAAGATGAGAGTGGAA+GGG + chr1_3:47236014-47236033 None:intergenic 40.0%
AAGATCAAGATGAGAGTGGA+AGG + chr1_3:47236015-47236034 None:intergenic 40.0%
!! ACGGAGATTCATGATAATGG+AGG + chr1_3:47236175-47236194 None:intergenic 40.0%
TGGACGGAGATTCATGATAA+TGG + chr1_3:47236178-47236197 None:intergenic 40.0%
!! GGTGTTGATTCTATGGATTG+GGG + chr1_3:47236294-47236313 None:intergenic 40.0%
GACTTGACTATCTCAACGAA+AGG + chr1_3:47236504-47236523 None:intergenic 40.0%
!! CTTTTTGCTATGGGTGGTTA+TGG - chr1_3:47236685-47236704 Msa0121420:intron 40.0%
CATTCGATATTCCGATGATG+TGG - chr1_3:47236726-47236745 Msa0121420:intron 40.0%
! ACCTTCACTGTTTGAGGTAA+TGG - chr1_3:47237426-47237445 Msa0121420:intron 40.0%
ACCATTACCTCAAACAGTGA+AGG + chr1_3:47237430-47237449 None:intergenic 40.0%
GTGTCCAATGTTCAACATGT+TGG - chr1_3:47237665-47237684 Msa0121420:intron 40.0%
TCCTTGTGCAAATAGTTGCA+GGG - chr1_3:47237826-47237845 Msa0121420:intron 40.0%
AGCTGATGCACAAGTTACTT+TGG + chr1_3:47237894-47237913 None:intergenic 40.0%
TTCAGGTAACTGAAAGTGAG+GGG + chr1_3:47237999-47238018 None:intergenic 40.0%
CATTCAGGTAACTGAAAGTG+AGG + chr1_3:47238001-47238020 None:intergenic 40.0%
CAGTTACCTGAATGATATGC+AGG - chr1_3:47238007-47238026 Msa0121420:intron 40.0%
GATTTCCCTGCATATCATTC+AGG + chr1_3:47238016-47238035 None:intergenic 40.0%
AATGATATGCAGGGAAATCC+TGG - chr1_3:47238017-47238036 Msa0121420:intron 40.0%
AAGGCCTAATTGAAGTCCAA+GGG + chr1_3:47238105-47238124 None:intergenic 40.0%
TAAGGCCTAATTGAAGTCCA+AGG + chr1_3:47238106-47238125 None:intergenic 40.0%
!!! TGAAGTTTTAAGAACCGGTG+CGG + chr1_3:47238190-47238209 None:intergenic 40.0%
!!! ACTACTCCAGCTTTTTCACA+TGG - chr1_3:47238289-47238308 Msa0121420:intron 40.0%
CTGTTTCCATGTGAAAAAGC+TGG + chr1_3:47238298-47238317 None:intergenic 40.0%
!!! CAGCTTTTTCACATGGAAAC+AGG - chr1_3:47238296-47238315 Msa0121420:intron 40.0%
! ACTACAATTGCTGGTTGACT+TGG - chr1_3:47238341-47238360 Msa0121420:intron 40.0%
TCTGTATCTAGTTGCGTTCA+CGG + chr1_3:47238502-47238521 None:intergenic 40.0%
AATTGTCGGTGGAGGATATT+TGG + chr1_3:47238698-47238717 None:intergenic 40.0%
TTCATATGAATTGTCGGTGG+AGG + chr1_3:47238706-47238725 None:intergenic 40.0%
GGTTTCATATGAATTGTCGG+TGG + chr1_3:47238709-47238728 None:intergenic 40.0%
GTAAACCGGTATATATCCTG+AGG - chr1_3:47238738-47238757 Msa0121420:intron 40.0%
ATGAGGCGGATAAATCCTTA+AGG + chr1_3:47238781-47238800 None:intergenic 40.0%
CTCTTCTTGGATTGAAACCA+AGG - chr1_3:47238829-47238848 Msa0121420:intron 40.0%
! TCTTGATAGTTCTGCATCCT+TGG + chr1_3:47238849-47238868 None:intergenic 40.0%
!! CAGTTTTATGCATCACATCC+AGG + chr1_3:47239430-47239449 None:intergenic 40.0%
CTGGATGTGATGCATAAAAC+TGG - chr1_3:47239428-47239447 Msa0121420:intron 40.0%
AATCACTTGGCGTATGTTAG+CGG - chr1_3:47239532-47239551 Msa0121420:intron 40.0%
GAGCACTCATGAAATAATCC+AGG + chr1_3:47239629-47239648 None:intergenic 40.0%
CAAATCATACACCACCCATA+AGG - chr1_3:47239724-47239743 Msa0121420:intron 40.0%
CTAGACACTGCATTATTGAG+AGG + chr1_3:47239784-47239803 None:intergenic 40.0%
TTGTTCTTGTCCCTTTCCTA+TGG + chr1_3:47239822-47239841 None:intergenic 40.0%
GATTGGAGATCCCATGAATA+AGG + chr1_3:47239909-47239928 None:intergenic 40.0%
GATCTCCAATCACAAAGGTT+GGG - chr1_3:47239918-47239937 Msa0121420:intron 40.0%
GCTACTAAACAAAGCCTCTT+GGG + chr1_3:47240012-47240031 None:intergenic 40.0%
AGCTACTAAACAAAGCCTCT+TGG + chr1_3:47240013-47240032 None:intergenic 40.0%
AAGCGACATCACTATCAATG+TGG - chr1_3:47240187-47240206 Msa0121420:intron 40.0%
! GTGATAATGCACTCACAATG+GGG - chr1_3:47240569-47240588 Msa0121420:three_prime_UTR 40.0%
! GGTGAGCTAATATGTTGGTT+TGG + chr1_3:47241170-47241189 None:intergenic 40.0%
CATTTATCCATAGAATGCGG+AGG + chr1_3:47241416-47241435 None:intergenic 40.0%
AATATGTACCAGATCCCTTG+TGG - chr1_3:47241518-47241537 Msa0121420:CDS 40.0%
ATCCCTTGTGGATGATTTCA+AGG - chr1_3:47241530-47241549 Msa0121420:intron 40.0%
TCCCTTGTGGATGATTTCAA+GGG - chr1_3:47241531-47241550 Msa0121420:intron 40.0%
TCCCTTGAAATCATCCACAA+GGG + chr1_3:47241535-47241554 None:intergenic 40.0%
GCATCAGATTCTTGAATCAG+AGG - chr1_3:47241659-47241678 Msa0121420:intron 40.0%
AGAGTTTCATACTCCATGTC+TGG - chr1_3:47241707-47241726 Msa0121420:CDS 40.0%
CTCGATATGTTATCCAGACA+TGG + chr1_3:47241723-47241742 None:intergenic 40.0%
AATTGTCGGTGGAGGATATT+TGG + chr1_3:47238698-47238717 None:intergenic 40.0%
TTCATATGAATTGTCGGTGG+AGG + chr1_3:47238706-47238725 None:intergenic 40.0%
GGTTTCATATGAATTGTCGG+TGG + chr1_3:47238709-47238728 None:intergenic 40.0%
GTAAACCGGTATATAACCTG+AGG - chr1_3:47242188-47242207 Msa0121420:CDS 40.0%
ATGAGGCGGATAAATCCTTA+AGG + chr1_3:47238781-47238800 None:intergenic 40.0%
CTCTTCTTGGATTGAAACCA+AGG - chr1_3:47238829-47238848 Msa0121420:intron 40.0%
! TCTTGATAGTTCTGCATCCT+TGG + chr1_3:47238849-47238868 None:intergenic 40.0%
GAAACCACGTGTAAAAGTGG+AGG - chr1_3:47235952-47235971 Msa0121420:three_prime_UTR 45.0%
TTGCGCCAAGAGAGGAAATT+TGG + chr1_3:47236230-47236249 None:intergenic 45.0%
GCGGCGTAAAGTAAAGACAA+TGG + chr1_3:47236348-47236367 None:intergenic 45.0%
GTCACATGAATTGCTCTTGC+AGG - chr1_3:47236654-47236673 Msa0121420:intron 45.0%
!! GCAGTGGTGCTTTTTGCTAT+GGG - chr1_3:47236676-47236695 Msa0121420:intron 45.0%
GGTGGTTATGGTACCTATCT+GGG - chr1_3:47236697-47236716 Msa0121420:intron 45.0%
TCGAATGCGAAAACCCAGAT+AGG + chr1_3:47236713-47236732 None:intergenic 45.0%
TAGCTGGTGTACCACATCAT+CGG + chr1_3:47236740-47236759 None:intergenic 45.0%
TTTGTAGGAGGAAAAGGCCA+AGG - chr1_3:47237103-47237122 Msa0121420:intron 45.0%
TTGCATCCCAAGCTATTAGC+TGG - chr1_3:47237134-47237153 Msa0121420:intron 45.0%
TTCTTTGCTCTTGGAGCTAC+TGG - chr1_3:47237167-47237186 Msa0121420:intron 45.0%
AAGGCCAATAACGCCTGTAA+CGG + chr1_3:47237380-47237399 None:intergenic 45.0%
TATTGTCTCCATGTCTGCGT+CGG - chr1_3:47237784-47237803 Msa0121420:intron 45.0%
GTCCTTGTGCAAATAGTTGC+AGG - chr1_3:47237825-47237844 Msa0121420:intron 45.0%
ACCCTGCAACTATTTGCACA+AGG + chr1_3:47237830-47237849 None:intergenic 45.0%
TCAGGTAACTGAAAGTGAGG+GGG + chr1_3:47237998-47238017 None:intergenic 45.0%
GTGTATATTCTTTCCCGCAC+CGG - chr1_3:47238173-47238192 Msa0121420:intron 45.0%
!!! GAAGTTTTAAGAACCGGTGC+GGG + chr1_3:47238189-47238208 None:intergenic 45.0%
CATGGTATCAACGCTACAGA+TGG + chr1_3:47238439-47238458 None:intergenic 45.0%
GACTTTCTGGGTTAACATCC+TGG - chr1_3:47239409-47239428 Msa0121420:intron 45.0%
TGAGATCTTGGCGAAATCTC+TGG + chr1_3:47239651-47239670 None:intergenic 45.0%
TCGCCAAGATCTCATACAAG+CGG - chr1_3:47239657-47239676 Msa0121420:intron 45.0%
ACCTATGTGAGTGTCAAGTG+GGG + chr1_3:47239683-47239702 None:intergenic 45.0%
CACCTATGTGAGTGTCAAGT+GGG + chr1_3:47239684-47239703 None:intergenic 45.0%
TCACCTATGTGAGTGTCAAG+TGG + chr1_3:47239685-47239704 None:intergenic 45.0%
TCTCACACACACCATAGGAA+AGG - chr1_3:47239808-47239827 Msa0121420:intron 45.0%
CTCACACACACCATAGGAAA+GGG - chr1_3:47239809-47239828 Msa0121420:intron 45.0%
CATGGGATCTCCAATCACAA+AGG - chr1_3:47239913-47239932 Msa0121420:intron 45.0%
GGATCTCCAATCACAAAGGT+TGG - chr1_3:47239917-47239936 Msa0121420:intron 45.0%
TGGAACCCAACCTTTGTGAT+TGG + chr1_3:47239926-47239945 None:intergenic 45.0%
! TAAGTCACGGATTGCACAAC+TGG - chr1_3:47241087-47241106 Msa0121420:intron 45.0%
TGCATAACCTCCGCATTCTA+TGG - chr1_3:47241406-47241425 Msa0121420:intron 45.0%
GAAATCATCCACAAGGGATC+TGG + chr1_3:47241529-47241548 None:intergenic 45.0%
CTCCCTTGAAATCATCCACA+AGG + chr1_3:47241536-47241555 None:intergenic 45.0%
AAGGTTCACCAGCTCTATCA+AGG - chr1_3:47241785-47241804 Msa0121420:CDS 45.0%
GCTGAAAACCTTGATAGAGC+TGG + chr1_3:47241796-47241815 None:intergenic 45.0%
!!! AAAATTAATTAACTAATTTT+TGG - chr1_3:47239841-47239860 Msa0121420:intron 5.0%
!!! AATTGTTAATAATTTTATTT+TGG + chr1_3:47241630-47241649 None:intergenic 5.0%
TCGCGCCAAATTTCCTCTCT+TGG - chr1_3:47236222-47236241 Msa0121420:intron 50.0%
TTGTGGCGTGACATTTGAGG+TGG + chr1_3:47236260-47236279 None:intergenic 50.0%
GGTTTGTGGCGTGACATTTG+AGG + chr1_3:47236263-47236282 None:intergenic 50.0%
! TTGGGGTGAGTCTTGGTTTG+TGG + chr1_3:47236277-47236296 None:intergenic 50.0%
!! CTATGGATTGGGGTGAGTCT+TGG + chr1_3:47236284-47236303 None:intergenic 50.0%
AGTCGTTGAATCTGCCTGAC+TGG - chr1_3:47236520-47236539 Msa0121420:intron 50.0%
!! TGCCTGACTGGCTTGTACAT+TGG - chr1_3:47236532-47236551 Msa0121420:intron 50.0%
!! GCCTGACTGGCTTGTACATT+GGG - chr1_3:47236533-47236552 Msa0121420:intron 50.0%
!! CCTGACTGGCTTGTACATTG+GGG - chr1_3:47236534-47236553 Msa0121420:intron 50.0%
TGAATTGCTCTTGCAGGCAG+TGG - chr1_3:47236660-47236679 Msa0121420:intron 50.0%
!! GGCAGTGGTGCTTTTTGCTA+TGG - chr1_3:47236675-47236694 Msa0121420:intron 50.0%
!! GTGGTGCTTTTTGCTATGGG+TGG - chr1_3:47236679-47236698 Msa0121420:intron 50.0%
GGGTGGTTATGGTACCTATC+TGG - chr1_3:47236696-47236715 Msa0121420:intron 50.0%
TAGCTTGGGATGCAAGTCCT+TGG + chr1_3:47237129-47237148 None:intergenic 50.0%
TTTGCTCTTGGAGCTACTGG+TGG - chr1_3:47237170-47237189 Msa0121420:intron 50.0%
TACAGTCCTCATGCCGTTAC+AGG - chr1_3:47237364-47237383 Msa0121420:intron 50.0%
ATAACGCCTGTAACGGCATG+AGG + chr1_3:47237373-47237392 None:intergenic 50.0%
CATGCCGTTACAGGCGTTAT+TGG - chr1_3:47237373-47237392 Msa0121420:intron 50.0%
TGACACGACACCACCATATG+TGG - chr1_3:47237700-47237719 Msa0121420:intron 50.0%
GAAAGTGAGGGGGTGAAAAG+TGG + chr1_3:47237988-47238007 None:intergenic 50.0%
TTTCTTGTCCATGCTGCCCT+TGG - chr1_3:47238086-47238105 Msa0121420:intron 50.0%
ATTGAAGTCCAAGGGCAGCA+TGG + chr1_3:47238097-47238116 None:intergenic 50.0%
GCTGCCCTTGGACTTCAATT+AGG - chr1_3:47238098-47238117 Msa0121420:intron 50.0%
GCACGCCTCAGGATATATAC+CGG + chr1_3:47238746-47238765 None:intergenic 50.0%
TGCTGATCGCACTGTCCTTA+AGG - chr1_3:47238763-47238782 Msa0121420:intron 50.0%
AGAAGAGCCTGCTGAATCCT+GGG + chr1_3:47238816-47238835 None:intergenic 50.0%
AAGAAGAGCCTGCTGAATCC+TGG + chr1_3:47238817-47238836 None:intergenic 50.0%
AGGATTCAGCAGGCTCTTCT+TGG - chr1_3:47238816-47238835 Msa0121420:intron 50.0%
AAATAATCCAGGCACGCGCA+CGG + chr1_3:47239618-47239637 None:intergenic 50.0%
GCACTTCTCACACACACCAT+AGG - chr1_3:47239803-47239822 Msa0121420:intron 50.0%
TTGTGTGCATCGAGGGGATT+GGG + chr1_3:47239978-47239997 None:intergenic 50.0%
TTTGTGTGCATCGAGGGGAT+TGG + chr1_3:47239979-47239998 None:intergenic 50.0%
TAAGCGACAAACCCCCACAT+TGG - chr1_3:47240419-47240438 Msa0121420:three_prime_UTR 50.0%
AAGCGACAAACCCCCACATT+GGG - chr1_3:47240420-47240439 Msa0121420:three_prime_UTR 50.0%
GCACGCCTCAGGTTATATAC+CGG + chr1_3:47242196-47242215 None:intergenic 50.0%
TGCTGATCGCACTGTCCTTA+AGG - chr1_3:47238763-47238782 Msa0121420:intron 50.0%
AGAAGAGCCTGCTGAATCCT+GGG + chr1_3:47238816-47238835 None:intergenic 50.0%
AAGAAGAGCCTGCTGAATCC+TGG + chr1_3:47238817-47238836 None:intergenic 50.0%
AGGATTCAGCAGGCTCTTCT+TGG - chr1_3:47238816-47238835 Msa0121420:intron 50.0%
!! GCGACCTCCACTTTTACACG+TGG + chr1_3:47235959-47235978 None:intergenic 55.0%
AAGATGAGAGTGGAAGGGCG+AGG + chr1_3:47236009-47236028 None:intergenic 55.0%
! TGGCGTGACATTTGAGGTGG+AGG + chr1_3:47236257-47236276 None:intergenic 55.0%
ACCTCCAGGTAAGAGAGCAG+CGG + chr1_3:47236367-47236386 None:intergenic 55.0%
CCCCAATGTACAAGCCAGTC+AGG + chr1_3:47236537-47236556 None:intergenic 55.0%
!! TATGAGCACCGACGCAGACA+TGG + chr1_3:47237795-47237814 None:intergenic 55.0%
GGGGATTTGCGCTTATGAGG+CGG + chr1_3:47238795-47238814 None:intergenic 55.0%
CTGGGGGATTTGCGCTTATG+AGG + chr1_3:47238798-47238817 None:intergenic 55.0%
CTCATAAGCGCAAATCCCCC+AGG - chr1_3:47238796-47238815 Msa0121420:intron 55.0%
CAAATCCCCCAGGATTCAGC+AGG - chr1_3:47238806-47238825 Msa0121420:intron 55.0%
AAGAGCCTGCTGAATCCTGG+GGG + chr1_3:47238814-47238833 None:intergenic 55.0%
GAAGAGCCTGCTGAATCCTG+GGG + chr1_3:47238815-47238834 None:intergenic 55.0%
GGGCCGCTTGTATGAGATCT+TGG + chr1_3:47239663-47239682 None:intergenic 55.0%
GCCCCACTTGACACTCACAT+AGG - chr1_3:47239679-47239698 Msa0121420:intron 55.0%
CAAGTGACAACTCCCCCCAT+TGG - chr1_3:47240499-47240518 Msa0121420:three_prime_UTR 55.0%
GGGGATTTGCGCTTATGAGG+CGG + chr1_3:47238795-47238814 None:intergenic 55.0%
CTGGGGGATTTGCGCTTATG+AGG + chr1_3:47238798-47238817 None:intergenic 55.0%
CTCATAAGCGCAAATCCCCC+AGG - chr1_3:47238796-47238815 Msa0121420:intron 55.0%
CAAATCCCCCAGGATTCAGC+AGG - chr1_3:47238806-47238825 Msa0121420:intron 55.0%
AAGAGCCTGCTGAATCCTGG+GGG + chr1_3:47238814-47238833 None:intergenic 55.0%
GAAGAGCCTGCTGAATCCTG+GGG + chr1_3:47238815-47238834 None:intergenic 55.0%
TACGCCGCTGCTCTCTTACC+TGG - chr1_3:47236360-47236379 Msa0121420:intron 60.0%
TTGGGGTCACCCTGCCAACA+TGG - chr1_3:47236551-47236570 Msa0121420:intron 60.0%
GGAGGAAAAGGCCAAGGCCA+AGG - chr1_3:47237109-47237128 Msa0121420:intron 60.0%
GGGATGCAAGTCCTTGGCCT+TGG + chr1_3:47237123-47237142 None:intergenic 60.0%
AGCGCCAACGGCAAGAATCG+CGG + chr1_3:47239579-47239598 None:intergenic 60.0%
GATTCTTGCCGTTGGCGCTG+TGG - chr1_3:47239580-47239599 Msa0121420:intron 60.0%
GAGGCGAGTTGCGCCAAGAG+AGG + chr1_3:47236238-47236257 None:intergenic 65.0%
GCCGCTGCTCTCTTACCTGG+AGG - chr1_3:47236363-47236382 Msa0121420:intron 65.0%
CAGTGCGATCAGCACGCCTC+AGG + chr1_3:47238757-47238776 None:intergenic 65.0%
! TCGCGGGGGTGTGAAGCGAA+TGG + chr1_3:47239562-47239581 None:intergenic 65.0%
ACCCCCGCGATTCTTGCCGT+TGG - chr1_3:47239572-47239591 Msa0121420:intron 65.0%
GCCAACGGCAAGAATCGCGG+GGG + chr1_3:47239576-47239595 None:intergenic 65.0%
CGCCAACGGCAAGAATCGCG+GGG + chr1_3:47239577-47239596 None:intergenic 65.0%
GCGCCAACGGCAAGAATCGC+GGG + chr1_3:47239578-47239597 None:intergenic 65.0%
TTCGCGCACCACAGCGCCAA+CGG + chr1_3:47239591-47239610 None:intergenic 65.0%
TGGCGCTGTGGTGCGCGAAT+AGG - chr1_3:47239592-47239611 Msa0121420:intron 65.0%
CAGTGCGATCAGCACGCCTC+AGG + chr1_3:47238757-47238776 None:intergenic 65.0%
GAATAGGCCGTGCGCGTGCC+TGG - chr1_3:47239608-47239627 Msa0121420:intron 70.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 47235948 47242968 47235948 ID=Msa0121420;Name=Msa0121420
chr1_3 mRNA 47235948 47242968 47235948 ID=Msa0121420-mRNA-1;Parent=Msa0121420;Name=Msa0121420-mRNA-1;_AED=0.08;_eAED=0.08;_QI=205|1|1|1|0.71|0.62|8|436|234
chr1_3 exon 47235948 47236096 47235948 ID=Msa0121420-mRNA-1:exon:14258;Parent=Msa0121420-mRNA-1
chr1_3 exon 47240378 47240644 47240378 ID=Msa0121420-mRNA-1:exon:14257;Parent=Msa0121420-mRNA-1
chr1_3 exon 47240763 47240887 47240763 ID=Msa0121420-mRNA-1:exon:14256;Parent=Msa0121420-mRNA-1
chr1_3 exon 47241475 47241547 47241475 ID=Msa0121420-mRNA-1:exon:14255;Parent=Msa0121420-mRNA-1
chr1_3 exon 47241682 47241806 47241682 ID=Msa0121420-mRNA-1:exon:14254;Parent=Msa0121420-mRNA-1
chr1_3 exon 47242169 47242240 47242169 ID=Msa0121420-mRNA-1:exon:14253;Parent=Msa0121420-mRNA-1
chr1_3 exon 47242344 47242441 47242344 ID=Msa0121420-mRNA-1:exon:14252;Parent=Msa0121420-mRNA-1
chr1_3 exon 47242532 47242968 47242532 ID=Msa0121420-mRNA-1:exon:14251;Parent=Msa0121420-mRNA-1
chr1_3 five_prime_UTR 47242764 47242968 47242764 ID=Msa0121420-mRNA-1:five_prime_utr;Parent=Msa0121420-mRNA-1
chr1_3 CDS 47242532 47242763 47242532 ID=Msa0121420-mRNA-1:cds;Parent=Msa0121420-mRNA-1
chr1_3 CDS 47242344 47242441 47242344 ID=Msa0121420-mRNA-1:cds;Parent=Msa0121420-mRNA-1
chr1_3 CDS 47242169 47242240 47242169 ID=Msa0121420-mRNA-1:cds;Parent=Msa0121420-mRNA-1
chr1_3 CDS 47241682 47241806 47241682 ID=Msa0121420-mRNA-1:cds;Parent=Msa0121420-mRNA-1
chr1_3 CDS 47241475 47241547 47241475 ID=Msa0121420-mRNA-1:cds;Parent=Msa0121420-mRNA-1
chr1_3 CDS 47240783 47240887 47240783 ID=Msa0121420-mRNA-1:cds;Parent=Msa0121420-mRNA-1
chr1_3 three_prime_UTR 47240763 47240782 47240763 ID=Msa0121420-mRNA-1:three_prime_utr;Parent=Msa0121420-mRNA-1
chr1_3 three_prime_UTR 47240378 47240644 47240378 ID=Msa0121420-mRNA-1:three_prime_utr;Parent=Msa0121420-mRNA-1
chr1_3 three_prime_UTR 47235948 47236096 47235948 ID=Msa0121420-mRNA-1:three_prime_utr;Parent=Msa0121420-mRNA-1
Gene Sequence

>Msa0121420

ATGGCAATGCTAGCTGCTACCTCCATTATCATGAATCTCCGTCCATCTTCACCAATTTCATTTCATAATTCGCGCCAAATTTCCTCTCTTGGCGCAACTCGCCTCCACCTCAAATGTCACGCCACAAACCAAGACTCACCCCAATCCATAGAATCAACACCAAAAAGTGAAACAATCTTACACTCTTTCTCTCCATTGTCTTTACTTTACGCCGCTGCTCTCTTACCTGGAGATGGAGCTGTGAGATCTGCGTTTGCGCCTTTCGTTGAGATAGTCAAGTCGTTGAATCTGCCTGACTGGCTTGTACATTGGGGTCACCCTGCCAACATGGCAGTGGTGCTTTTTGCTATGGGTGGTTATGGTACCTATCTGGGTTTTCGCATTCGATATTCCGATGATGTGGAGGAAAAGGCCAAGGCCAAGGACTTGCATCCCAAGCTATTAGCTGGTATGTTTTTCTTCTTTGCTCTTGGAGCTACTGGTGGAGTAACATCTCTACTCACATCAGATAAACCCATTTTTGACAGTCCTCATGCCGTTACAGGCGTTATTGGCCTTGCTTTGTTGACAATACAGACTATATTACCTTCACTGTTTGAGGGAAATCCTGGATTAAGAAATGTTCATGGCATCTTGGGTAGTAGTATCATGACACTTTTTCTTGTCCATGCTGCCCTTGGACTTCAATTAGGCCTTAGTTCATAA

Protein sequence

>Msa0121420

MAMLAATSIIMNLRPSSPISFHNSRQISSLGATRLHLKCHATNQDSPQSIESTPKSETILHSFSPLSLLYAAALLPGDGAVRSAFAPFVEIVKSLNLPDWLVHWGHPANMAVVLFAMGGYGTYLGFRIRYSDDVEEKAKAKDLHPKLLAGMFFFFALGATGGVTSLLTSDKPIFDSPHAVTGVIGLALLTIQTILPSLFEGNPGLRNVHGILGSSIMTLFLVHAALGLQLGLSS*