AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0779790


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0779790 MtrunA17_Chr5g0444521 90.164 122 9 1 1 122 1 119 5.56e-77 223
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 84 sgRNAs with CRISPR-Local

Find 289 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAGATGATTGTACTTTCTT+TGG 0.233169 5_2:+61138104 None:intergenic
ATTGTTTAAGTGTATGAATT+TGG 0.277378 5_2:-61138510 Msa0779790:three_prime_UTR
TTGAATGTGACTGCAAATTA+AGG 0.283762 5_2:-61137896 Msa0779790:three_prime_UTR
TTTCTTCAGTAAGTTCATTA+AGG 0.284385 5_2:-61139175 Msa0779790:CDS
ACTTATTCTTAAAGCTTGTT+AGG 0.292235 5_2:-61138440 Msa0779790:three_prime_UTR
CCCTTAAGCAATCGTTGTTC+TGG 0.294188 5_2:+61138541 None:intergenic
GAATTAGAGGGAAAAGAATT+AGG 0.296987 5_2:+61138402 None:intergenic
CCAGAACAACGATTGCTTAA+GGG 0.353383 5_2:-61138541 Msa0779790:three_prime_UTR
CGCAGCAGCAACATTATCTA+AGG 0.361910 5_2:-61139262 Msa0779790:CDS
GCAGCAACAACAATGATATC+TGG 0.364461 5_2:+61139140 None:intergenic
GCACAACACAAAACTACTTT+GGG 0.366214 5_2:-61139234 Msa0779790:CDS
AGAAAAGAACCGAACCTTAC+TGG 0.375391 5_2:+61139077 None:intergenic
TGTTCACTTGGGATAATGTT+TGG 0.377532 5_2:+61139414 None:intergenic
TCCAGAACAACGATTGCTTA+AGG 0.377860 5_2:-61138542 Msa0779790:three_prime_UTR
GTTCACTTGGGATAATGTTT+GGG 0.382397 5_2:+61139415 None:intergenic
AATTAATGCAATAGAATTAG+AGG 0.387989 5_2:+61138389 None:intergenic
ATGGATCGGCGGGTTGTGGC+AGG 0.389363 5_2:+61139111 None:intergenic
TTTGGTTCACTGTGTTCACT+TGG 0.398045 5_2:+61139402 None:intergenic
TGCTGCTTGGTTGCTTTCCA+TGG 0.401184 5_2:+61138073 None:intergenic
AAATACTTGCTTATAAAATC+TGG 0.401289 5_2:+61138681 None:intergenic
AGTTGTAAATTTATAATGTA+AGG 0.402084 5_2:-61139468 None:intergenic
GAGGAGATGTTTCGAGGAGA+TGG 0.405896 5_2:+61138159 None:intergenic
GAAGCAATGAAGAGGGGAGG+TGG 0.407582 5_2:+61139306 None:intergenic
CTATGTGGCATGGTCTTGCT+TGG 0.417895 5_2:+61139206 None:intergenic
AGAGGAGTCGACGGAGGTTG+CGG 0.427531 5_2:+61138022 None:intergenic
AGCACAACACAAAACTACTT+TGG 0.452055 5_2:-61139235 Msa0779790:CDS
TGGTTTCTGTAGAGAGAGAA+AGG 0.453577 5_2:+61138124 None:intergenic
TCCATCTGATGTTAATGACT+TGG 0.455869 5_2:+61138225 None:intergenic
CAATGATATCTGGAATTGCC+TGG 0.462076 5_2:+61139150 None:intergenic
TGAAGTATACTGATATAAGC+AGG 0.464588 5_2:+61138721 None:intergenic
TTGAGAGGATGTTTGCTGCT+TGG 0.464797 5_2:+61138060 None:intergenic
AGGAGATGTTTCGAGGAGAT+GGG 0.478806 5_2:+61138160 None:intergenic
CTTACTGGGAGAAAAGTAGA+TGG 0.479013 5_2:+61139092 None:intergenic
GATGAATGAAGTGAAAAGAG+AGG 0.486369 5_2:+61137930 None:intergenic
GTAGATGGATCGGCGGGTTG+TGG 0.490348 5_2:+61139107 None:intergenic
AAGCAATCGTTGTTCTGGAA+TGG 0.491369 5_2:+61138546 None:intergenic
GATTGAGAATAGAAATCAAA+GGG 0.491869 5_2:-61137765 Msa0779790:three_prime_UTR
AGGTTGCGGCGACGCGTGCT+AGG 0.513967 5_2:+61138036 None:intergenic
ACCAAGTCATTAACATCAGA+TGG 0.515131 5_2:-61138226 Msa0779790:three_prime_UTR
ATCATCTATCTCTCTAACCA+TGG 0.517363 5_2:-61138090 Msa0779790:three_prime_UTR
TGACTTGGTTAGTCATGTGT+TGG 0.529207 5_2:+61138240 None:intergenic
GAAAAGAACCGAACCTTACT+GGG 0.530829 5_2:+61139078 None:intergenic
TGAGTCAGAGGAAGTGAATA+CGG 0.534463 5_2:-61137816 Msa0779790:three_prime_UTR
TTGGTTCACTGTGTTCACTT+GGG 0.535296 5_2:+61139403 None:intergenic
AGAAAGGAAAGAAGTTGCAG+AGG 0.535747 5_2:+61138140 None:intergenic
CTTAGATAATGTTGCTGCTG+CGG 0.540896 5_2:+61139263 None:intergenic
TTGGGATAATGTTTGGGAGG+AGG 0.545339 5_2:+61139421 None:intergenic
TTTGGATTTGATAAACTAGA+GGG 0.553590 5_2:-61138660 Msa0779790:CDS
GTGACTGCAAATTAAGGTTG+TGG 0.555114 5_2:-61137890 Msa0779790:three_prime_UTR
CACTTGGGATAATGTTTGGG+AGG 0.556445 5_2:+61139418 None:intergenic
TGCATGAGAAGCAATGAAGA+GGG 0.563172 5_2:+61139299 None:intergenic
GTTGCAGAGGAGATGTTTCG+AGG 0.564147 5_2:+61138153 None:intergenic
TGGATCGGCGGGTTGTGGCA+GGG 0.568272 5_2:+61139112 None:intergenic
TGTGTAGAGAGAGGAGTCGA+CGG 0.580775 5_2:+61138013 None:intergenic
GGAGATGTTTCGAGGAGATG+GGG 0.582686 5_2:+61138161 None:intergenic
AGAAAAGTAGATGGATCGGC+GGG 0.588206 5_2:+61139101 None:intergenic
AATGATATCTGGAATTGCCT+GGG 0.588413 5_2:+61139151 None:intergenic
GAAGAAAAGTGCTTACTATG+TGG 0.588606 5_2:+61139191 None:intergenic
TCCTCTCTCTACACAGTCGA+TGG 0.598151 5_2:-61138005 Msa0779790:three_prime_UTR
TGGGAGAAAAGTAGATGGAT+CGG 0.598368 5_2:+61139097 None:intergenic
ATTAATGCAATAGAATTAGA+GGG 0.605171 5_2:+61138390 None:intergenic
GCAGCAACATTATCTAAGGA+TGG 0.606428 5_2:-61139258 Msa0779790:CDS
GAATACGGTGATTGTTCTGT+GGG 0.606541 5_2:-61137801 Msa0779790:three_prime_UTR
AGTAAGTTCATTAAGGACCC+AGG 0.609846 5_2:-61139168 Msa0779790:CDS
CGACGCGTGCTAGGTTTGAG+AGG 0.615477 5_2:+61138045 None:intergenic
TGATTGAGAATAGAAATCAA+AGG 0.616077 5_2:-61137766 Msa0779790:three_prime_UTR
TAAACTAGAGGGAGACCAGA+AGG 0.616294 5_2:-61138649 Msa0779790:CDS
TTAGTTAAACTAGTTATGCG+TGG 0.617347 5_2:+61139348 None:intergenic
AAAGTGCTTACTATGTGGCA+TGG 0.619717 5_2:+61139196 None:intergenic
TCTCTCTACACAGTCGATGG+TGG 0.626820 5_2:-61138002 Msa0779790:three_prime_UTR
GAAGTATACTGATATAAGCA+GGG 0.632422 5_2:+61138722 None:intergenic
GAGAAAGAGAAAGAGAAAGA+CGG 0.633723 5_2:+61138187 None:intergenic
ACAGATTAATGTGCGCTGAG+TGG 0.640367 5_2:+61138265 None:intergenic
GGGGAGGTGGAGACAAGTCA+TGG 0.642574 5_2:+61139319 None:intergenic
TGAATACGGTGATTGTTCTG+TGG 0.643276 5_2:-61137802 Msa0779790:three_prime_UTR
ATGCATGAGAAGCAATGAAG+AGG 0.647708 5_2:+61139298 None:intergenic
AAAGCTAACATGATCGAGTG+TGG 0.653767 5_2:-61137860 Msa0779790:three_prime_UTR
TGAGAAGCAATGAAGAGGGG+AGG 0.663602 5_2:+61139303 None:intergenic
GAGAAAAGTAGATGGATCGG+CGG 0.670606 5_2:+61139100 None:intergenic
ACCATCGACTGTGTAGAGAG+AGG 0.683162 5_2:+61138004 None:intergenic
GTAGAGAGAGGAGTCGACGG+AGG 0.691735 5_2:+61138016 None:intergenic
GCGCTGAGTGGAGATTTCAA+AGG 0.692918 5_2:+61138277 None:intergenic
GCATGAGAAGCAATGAAGAG+GGG 0.705476 5_2:+61139300 None:intergenic
CACAACACAAAACTACTTTG+GGG 0.712340 5_2:-61139233 Msa0779790:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTTTTTTTTTTACACT+AGG - chr5_2:61138177-61138196 Msa0779790:three_prime_UTR 10.0%
!!! TATTTTTTTTTTTTTACACT+AGG - chr5_2:61138177-61138196 Msa0779790:three_prime_UTR 10.0%
!!! AACAAGATATAGTTTTTTTT+TGG + chr5_2:61137810-61137829 None:intergenic 15.0%
!!! AACAAGATATAGTTTTTTTT+TGG + chr5_2:61137810-61137829 None:intergenic 15.0%
!! AAATACTTGCTTATAAAATC+TGG + chr5_2:61138513-61138532 None:intergenic 20.0%
!!! GATTTTATAAGCAAGTATTT+TGG - chr5_2:61138513-61138532 Msa0779790:three_prime_UTR 20.0%
!! ATTGTTTAAGTGTATGAATT+TGG - chr5_2:61138681-61138700 Msa0779790:CDS 20.0%
!! ATTAATGCAATAGAATTAGA+GGG + chr5_2:61138804-61138823 None:intergenic 20.0%
!! AATTAATGCAATAGAATTAG+AGG + chr5_2:61138805-61138824 None:intergenic 20.0%
!! ATTCAAATCGCAAAAATAAT+AGG + chr5_2:61138860-61138879 None:intergenic 20.0%
!! AAATACTTGCTTATAAAATC+TGG + chr5_2:61138513-61138532 None:intergenic 20.0%
!!! GATTTTATAAGCAAGTATTT+TGG - chr5_2:61138513-61138532 Msa0779790:three_prime_UTR 20.0%
!! ATTGTTTAAGTGTATGAATT+TGG - chr5_2:61138681-61138700 Msa0779790:CDS 20.0%
!! ATTAATGCAATAGAATTAGA+GGG + chr5_2:61138804-61138823 None:intergenic 20.0%
!! AATTAATGCAATAGAATTAG+AGG + chr5_2:61138805-61138824 None:intergenic 20.0%
!! ATTCAAATCGCAAAAATAAT+AGG + chr5_2:61138860-61138879 None:intergenic 20.0%
! TTTCTTCAGTAAGTTCATTA+AGG - chr5_2:61138016-61138035 Msa0779790:three_prime_UTR 25.0%
! GTTCATTATGTCATATTTCA+TGG - chr5_2:61138144-61138163 Msa0779790:three_prime_UTR 25.0%
!! CTTGTTATATCTCCTAAAAA+GGG + chr5_2:61138394-61138413 None:intergenic 25.0%
!! TTTTGGATTTGATAAACTAG+AGG - chr5_2:61138530-61138549 Msa0779790:three_prime_UTR 25.0%
! TTTGGATTTGATAAACTAGA+GGG - chr5_2:61138531-61138550 Msa0779790:three_prime_UTR 25.0%
!!! TACTTTTTTTCTTCACATCA+GGG + chr5_2:61138599-61138618 None:intergenic 25.0%
!!! ATACTTTTTTTCTTCACATC+AGG + chr5_2:61138600-61138619 None:intergenic 25.0%
!! ACTTATTCTTAAAGCTTGTT+AGG - chr5_2:61138751-61138770 Msa0779790:intron 25.0%
!!! ATAGGAGGGAAATTTTTTTA+GGG + chr5_2:61138842-61138861 None:intergenic 25.0%
!!! AATAGGAGGGAAATTTTTTT+AGG + chr5_2:61138843-61138862 None:intergenic 25.0%
! AAATCGCAAAAATAATAGGA+GGG + chr5_2:61138856-61138875 None:intergenic 25.0%
! ATAGATGATTGTACTTTCTT+TGG + chr5_2:61139090-61139109 None:intergenic 25.0%
!!! AAGAGAGGATTTTAGTTTTA+GGG + chr5_2:61139249-61139268 None:intergenic 25.0%
!!! AAAGAGAGGATTTTAGTTTT+AGG + chr5_2:61139250-61139269 None:intergenic 25.0%
! TGATTGAGAATAGAAATCAA+AGG - chr5_2:61139425-61139444 Msa0779790:five_prime_UTR 25.0%
! GATTGAGAATAGAAATCAAA+GGG - chr5_2:61139426-61139445 Msa0779790:five_prime_UTR 25.0%
!!! TTTTTAACTTCTCATGTTCT+TGG - chr5_2:61139450-61139469 Msa0779790:five_prime_UTR 25.0%
! GTTCTTGGTTATTTGTAATT+TGG - chr5_2:61139465-61139484 Msa0779790:five_prime_UTR 25.0%
! TTTCTTCAGTAAGTTCATTA+AGG - chr5_2:61138016-61138035 Msa0779790:three_prime_UTR 25.0%
! GTTCATTATGTCATATTTCA+TGG - chr5_2:61138144-61138163 Msa0779790:three_prime_UTR 25.0%
!! CTTGTTATATCTCCTAAAAA+GGG + chr5_2:61138394-61138413 None:intergenic 25.0%
!! TTTTGGATTTGATAAACTAG+AGG - chr5_2:61138530-61138549 Msa0779790:three_prime_UTR 25.0%
! TTTGGATTTGATAAACTAGA+GGG - chr5_2:61138531-61138550 Msa0779790:three_prime_UTR 25.0%
!!! TACTTTTTTTCTTCACATCA+GGG + chr5_2:61138599-61138618 None:intergenic 25.0%
!!! ATACTTTTTTTCTTCACATC+AGG + chr5_2:61138600-61138619 None:intergenic 25.0%
!! ACTTATTCTTAAAGCTTGTT+AGG - chr5_2:61138751-61138770 Msa0779790:intron 25.0%
!!! ATAGGAGGGAAATTTTTTTA+GGG + chr5_2:61138842-61138861 None:intergenic 25.0%
!!! AATAGGAGGGAAATTTTTTT+AGG + chr5_2:61138843-61138862 None:intergenic 25.0%
! AAATCGCAAAAATAATAGGA+GGG + chr5_2:61138856-61138875 None:intergenic 25.0%
! ATAGATGATTGTACTTTCTT+TGG + chr5_2:61139090-61139109 None:intergenic 25.0%
!!! AAGAGAGGATTTTAGTTTTA+GGG + chr5_2:61139249-61139268 None:intergenic 25.0%
!!! AAAGAGAGGATTTTAGTTTT+AGG + chr5_2:61139250-61139269 None:intergenic 25.0%
! TGATTGAGAATAGAAATCAA+AGG - chr5_2:61139425-61139444 Msa0779790:five_prime_UTR 25.0%
! GATTGAGAATAGAAATCAAA+GGG - chr5_2:61139426-61139445 Msa0779790:five_prime_UTR 25.0%
!!! TTTTTAACTTCTCATGTTCT+TGG - chr5_2:61139450-61139469 Msa0779790:five_prime_UTR 25.0%
TTAGTTAAACTAGTTATGCG+TGG + chr5_2:61137846-61137865 None:intergenic 30.0%
!! GCTTGTTATATCTCCTAAAA+AGG + chr5_2:61138395-61138414 None:intergenic 30.0%
GAAGTATACTGATATAAGCA+GGG + chr5_2:61138472-61138491 None:intergenic 30.0%
TGAAGTATACTGATATAAGC+AGG + chr5_2:61138473-61138492 None:intergenic 30.0%
GAATTAGAGGGAAAAGAATT+AGG + chr5_2:61138792-61138811 None:intergenic 30.0%
CAAATCGCAAAAATAATAGG+AGG + chr5_2:61138857-61138876 None:intergenic 30.0%
ACATCAGATGGAAAAAATAG+AGG - chr5_2:61138977-61138996 Msa0779790:intron 30.0%
!!! GATTTTAGTTTTAGGGTTGA+AGG + chr5_2:61139242-61139261 None:intergenic 30.0%
TTGAATGTGACTGCAAATTA+AGG - chr5_2:61139295-61139314 Msa0779790:CDS 30.0%
TTAGTTAAACTAGTTATGCG+TGG + chr5_2:61137846-61137865 None:intergenic 30.0%
!! GCTTGTTATATCTCCTAAAA+AGG + chr5_2:61138395-61138414 None:intergenic 30.0%
GAAGTATACTGATATAAGCA+GGG + chr5_2:61138472-61138491 None:intergenic 30.0%
TGAAGTATACTGATATAAGC+AGG + chr5_2:61138473-61138492 None:intergenic 30.0%
GAATTAGAGGGAAAAGAATT+AGG + chr5_2:61138792-61138811 None:intergenic 30.0%
CAAATCGCAAAAATAATAGG+AGG + chr5_2:61138857-61138876 None:intergenic 30.0%
ACATCAGATGGAAAAAATAG+AGG - chr5_2:61138977-61138996 Msa0779790:intron 30.0%
!!! GATTTTAGTTTTAGGGTTGA+AGG + chr5_2:61139242-61139261 None:intergenic 30.0%
TTGAATGTGACTGCAAATTA+AGG - chr5_2:61139295-61139314 Msa0779790:CDS 30.0%
GTTCACTTGGGATAATGTTT+GGG + chr5_2:61137779-61137798 None:intergenic 35.0%
TGTTCACTTGGGATAATGTT+TGG + chr5_2:61137780-61137799 None:intergenic 35.0%
AGCACAACACAAAACTACTT+TGG - chr5_2:61137956-61137975 Msa0779790:three_prime_UTR 35.0%
GCACAACACAAAACTACTTT+GGG - chr5_2:61137957-61137976 Msa0779790:three_prime_UTR 35.0%
CACAACACAAAACTACTTTG+GGG - chr5_2:61137958-61137977 Msa0779790:three_prime_UTR 35.0%
!! GAAGAAAAGTGCTTACTATG+TGG + chr5_2:61138003-61138022 None:intergenic 35.0%
! AATGATATCTGGAATTGCCT+GGG + chr5_2:61138043-61138062 None:intergenic 35.0%
TAGGAGATATAACAAGCTAG+AGG - chr5_2:61138196-61138215 Msa0779790:three_prime_UTR 35.0%
AGGAGATATAACAAGCTAGA+GGG - chr5_2:61138197-61138216 Msa0779790:three_prime_UTR 35.0%
TAAAGTTGTTGTCATGTGAC+TGG - chr5_2:61138239-61138258 Msa0779790:three_prime_UTR 35.0%
ACAAGCTGCAAACTTAAACA+AGG - chr5_2:61138409-61138428 Msa0779790:three_prime_UTR 35.0%
ACCAAGTCATTAACATCAGA+TGG - chr5_2:61138965-61138984 Msa0779790:intron 35.0%
TCCATCTGATGTTAATGACT+TGG + chr5_2:61138969-61138988 None:intergenic 35.0%
GAGAAAGAGAAAGAGAAAGA+CGG + chr5_2:61139007-61139026 None:intergenic 35.0%
ATCATCTATCTCTCTAACCA+TGG - chr5_2:61139101-61139120 Msa0779790:CDS 35.0%
!! AAGGAATCTTTTGAAGAGGA+TGG + chr5_2:61139223-61139242 None:intergenic 35.0%
!! GTTGAAGGAATCTTTTGAAG+AGG + chr5_2:61139227-61139246 None:intergenic 35.0%
GATGAATGAAGTGAAAAGAG+AGG + chr5_2:61139264-61139283 None:intergenic 35.0%
GTTCACTTGGGATAATGTTT+GGG + chr5_2:61137779-61137798 None:intergenic 35.0%
TGTTCACTTGGGATAATGTT+TGG + chr5_2:61137780-61137799 None:intergenic 35.0%
AGCACAACACAAAACTACTT+TGG - chr5_2:61137956-61137975 Msa0779790:three_prime_UTR 35.0%
GCACAACACAAAACTACTTT+GGG - chr5_2:61137957-61137976 Msa0779790:three_prime_UTR 35.0%
CACAACACAAAACTACTTTG+GGG - chr5_2:61137958-61137977 Msa0779790:three_prime_UTR 35.0%
!! GAAGAAAAGTGCTTACTATG+TGG + chr5_2:61138003-61138022 None:intergenic 35.0%
! AATGATATCTGGAATTGCCT+GGG + chr5_2:61138043-61138062 None:intergenic 35.0%
TAGGAGATATAACAAGCTAG+AGG - chr5_2:61138196-61138215 Msa0779790:three_prime_UTR 35.0%
AGGAGATATAACAAGCTAGA+GGG - chr5_2:61138197-61138216 Msa0779790:three_prime_UTR 35.0%
TAAAGTTGTTGTCATGTGAC+TGG - chr5_2:61138239-61138258 Msa0779790:three_prime_UTR 35.0%
ACAAGCTGCAAACTTAAACA+AGG - chr5_2:61138409-61138428 Msa0779790:three_prime_UTR 35.0%
ACCAAGTCATTAACATCAGA+TGG - chr5_2:61138965-61138984 Msa0779790:intron 35.0%
TCCATCTGATGTTAATGACT+TGG + chr5_2:61138969-61138988 None:intergenic 35.0%
GAGAAAGAGAAAGAGAAAGA+CGG + chr5_2:61139007-61139026 None:intergenic 35.0%
ATCATCTATCTCTCTAACCA+TGG - chr5_2:61139101-61139120 Msa0779790:CDS 35.0%
!! AAGGAATCTTTTGAAGAGGA+TGG + chr5_2:61139223-61139242 None:intergenic 35.0%
!! GTTGAAGGAATCTTTTGAAG+AGG + chr5_2:61139227-61139246 None:intergenic 35.0%
GATGAATGAAGTGAAAAGAG+AGG + chr5_2:61139264-61139283 None:intergenic 35.0%
TTGGTTCACTGTGTTCACTT+GGG + chr5_2:61137791-61137810 None:intergenic 40.0%
! TTTGGTTCACTGTGTTCACT+TGG + chr5_2:61137792-61137811 None:intergenic 40.0%
TGCATGAGAAGCAATGAAGA+GGG + chr5_2:61137895-61137914 None:intergenic 40.0%
ATGCATGAGAAGCAATGAAG+AGG + chr5_2:61137896-61137915 None:intergenic 40.0%
CTTAGATAATGTTGCTGCTG+CGG + chr5_2:61137931-61137950 None:intergenic 40.0%
GCAGCAACATTATCTAAGGA+TGG - chr5_2:61137933-61137952 Msa0779790:three_prime_UTR 40.0%
! AAAGTGCTTACTATGTGGCA+TGG + chr5_2:61137998-61138017 None:intergenic 40.0%
AGTAAGTTCATTAAGGACCC+AGG - chr5_2:61138023-61138042 Msa0779790:three_prime_UTR 40.0%
! CAATGATATCTGGAATTGCC+TGG + chr5_2:61138044-61138063 None:intergenic 40.0%
GCAGCAACAACAATGATATC+TGG + chr5_2:61138054-61138073 None:intergenic 40.0%
TGGGAGAAAAGTAGATGGAT+CGG + chr5_2:61138097-61138116 None:intergenic 40.0%
CTTACTGGGAGAAAAGTAGA+TGG + chr5_2:61138102-61138121 None:intergenic 40.0%
!! CATCTACTTTTCTCCCAGTA+AGG - chr5_2:61138100-61138119 Msa0779790:three_prime_UTR 40.0%
! ACTTTTCTCCCAGTAAGGTT+CGG - chr5_2:61138105-61138124 Msa0779790:three_prime_UTR 40.0%
GAAAAGAACCGAACCTTACT+GGG + chr5_2:61138116-61138135 None:intergenic 40.0%
AGAAAAGAACCGAACCTTAC+TGG + chr5_2:61138117-61138136 None:intergenic 40.0%
GGAGATATAACAAGCTAGAG+GGG - chr5_2:61138198-61138217 Msa0779790:three_prime_UTR 40.0%
AGCCTCTTGTGTAAAAAGCA+GGG - chr5_2:61138289-61138308 Msa0779790:three_prime_UTR 40.0%
!!! TACCCTGCTTTTTACACAAG+AGG + chr5_2:61138294-61138313 None:intergenic 40.0%
CTTGTGTAAAAAGCAGGGTA+AGG - chr5_2:61138294-61138313 Msa0779790:three_prime_UTR 40.0%
CGTACAATACACCAAATGGT+GGG - chr5_2:61138320-61138339 Msa0779790:three_prime_UTR 40.0%
! CTTTTGCATCATCAACCTTC+TGG + chr5_2:61138560-61138579 None:intergenic 40.0%
!! AAGCAATCGTTGTTCTGGAA+TGG + chr5_2:61138648-61138667 None:intergenic 40.0%
TCCAGAACAACGATTGCTTA+AGG - chr5_2:61138649-61138668 Msa0779790:CDS 40.0%
CCAGAACAACGATTGCTTAA+GGG - chr5_2:61138650-61138669 Msa0779790:CDS 40.0%
!! TGACTTGGTTAGTCATGTGT+TGG + chr5_2:61138954-61138973 None:intergenic 40.0%
AGAAAGGAAAGAAGTTGCAG+AGG + chr5_2:61139054-61139073 None:intergenic 40.0%
TGGTTTCTGTAGAGAGAGAA+AGG + chr5_2:61139070-61139089 None:intergenic 40.0%
GTGACTGCAAATTAAGGTTG+TGG - chr5_2:61139301-61139320 Msa0779790:CDS 40.0%
AAAGCTAACATGATCGAGTG+TGG - chr5_2:61139331-61139350 Msa0779790:exon 40.0%
!!! TTTTTTGAGCGTTGAGTCAG+AGG - chr5_2:61139363-61139382 Msa0779790:five_prime_UTR 40.0%
TGAGTCAGAGGAAGTGAATA+CGG - chr5_2:61139375-61139394 Msa0779790:five_prime_UTR 40.0%
TGAATACGGTGATTGTTCTG+TGG - chr5_2:61139389-61139408 Msa0779790:five_prime_UTR 40.0%
GAATACGGTGATTGTTCTGT+GGG - chr5_2:61139390-61139409 Msa0779790:five_prime_UTR 40.0%
TTGGTTCACTGTGTTCACTT+GGG + chr5_2:61137791-61137810 None:intergenic 40.0%
! TTTGGTTCACTGTGTTCACT+TGG + chr5_2:61137792-61137811 None:intergenic 40.0%
TGCATGAGAAGCAATGAAGA+GGG + chr5_2:61137895-61137914 None:intergenic 40.0%
ATGCATGAGAAGCAATGAAG+AGG + chr5_2:61137896-61137915 None:intergenic 40.0%
CTTAGATAATGTTGCTGCTG+CGG + chr5_2:61137931-61137950 None:intergenic 40.0%
GCAGCAACATTATCTAAGGA+TGG - chr5_2:61137933-61137952 Msa0779790:three_prime_UTR 40.0%
! AAAGTGCTTACTATGTGGCA+TGG + chr5_2:61137998-61138017 None:intergenic 40.0%
AGTAAGTTCATTAAGGACCC+AGG - chr5_2:61138023-61138042 Msa0779790:three_prime_UTR 40.0%
! CAATGATATCTGGAATTGCC+TGG + chr5_2:61138044-61138063 None:intergenic 40.0%
GCAGCAACAACAATGATATC+TGG + chr5_2:61138054-61138073 None:intergenic 40.0%
TGGGAGAAAAGTAGATGGAT+CGG + chr5_2:61138097-61138116 None:intergenic 40.0%
CTTACTGGGAGAAAAGTAGA+TGG + chr5_2:61138102-61138121 None:intergenic 40.0%
!! CATCTACTTTTCTCCCAGTA+AGG - chr5_2:61138100-61138119 Msa0779790:three_prime_UTR 40.0%
! ACTTTTCTCCCAGTAAGGTT+CGG - chr5_2:61138105-61138124 Msa0779790:three_prime_UTR 40.0%
GAAAAGAACCGAACCTTACT+GGG + chr5_2:61138116-61138135 None:intergenic 40.0%
AGAAAAGAACCGAACCTTAC+TGG + chr5_2:61138117-61138136 None:intergenic 40.0%
GGAGATATAACAAGCTAGAG+GGG - chr5_2:61138198-61138217 Msa0779790:three_prime_UTR 40.0%
AGCCTCTTGTGTAAAAAGCA+GGG - chr5_2:61138289-61138308 Msa0779790:three_prime_UTR 40.0%
!!! TACCCTGCTTTTTACACAAG+AGG + chr5_2:61138294-61138313 None:intergenic 40.0%
CTTGTGTAAAAAGCAGGGTA+AGG - chr5_2:61138294-61138313 Msa0779790:three_prime_UTR 40.0%
CGTACAATACACCAAATGGT+GGG - chr5_2:61138320-61138339 Msa0779790:three_prime_UTR 40.0%
! CTTTTGCATCATCAACCTTC+TGG + chr5_2:61138560-61138579 None:intergenic 40.0%
!! AAGCAATCGTTGTTCTGGAA+TGG + chr5_2:61138648-61138667 None:intergenic 40.0%
TCCAGAACAACGATTGCTTA+AGG - chr5_2:61138649-61138668 Msa0779790:CDS 40.0%
CCAGAACAACGATTGCTTAA+GGG - chr5_2:61138650-61138669 Msa0779790:CDS 40.0%
!! TGACTTGGTTAGTCATGTGT+TGG + chr5_2:61138954-61138973 None:intergenic 40.0%
AGAAAGGAAAGAAGTTGCAG+AGG + chr5_2:61139054-61139073 None:intergenic 40.0%
TGGTTTCTGTAGAGAGAGAA+AGG + chr5_2:61139070-61139089 None:intergenic 40.0%
GTGACTGCAAATTAAGGTTG+TGG - chr5_2:61139301-61139320 Msa0779790:CDS 40.0%
AAAGCTAACATGATCGAGTG+TGG - chr5_2:61139331-61139350 Msa0779790:exon 40.0%
!!! TTTTTTGAGCGTTGAGTCAG+AGG - chr5_2:61139363-61139382 Msa0779790:five_prime_UTR 40.0%
TGAGTCAGAGGAAGTGAATA+CGG - chr5_2:61139375-61139394 Msa0779790:five_prime_UTR 40.0%
TGAATACGGTGATTGTTCTG+TGG - chr5_2:61139389-61139408 Msa0779790:five_prime_UTR 40.0%
GAATACGGTGATTGTTCTGT+GGG - chr5_2:61139390-61139409 Msa0779790:five_prime_UTR 40.0%
TTGGGATAATGTTTGGGAGG+AGG + chr5_2:61137773-61137792 None:intergenic 45.0%
CACTTGGGATAATGTTTGGG+AGG + chr5_2:61137776-61137795 None:intergenic 45.0%
GCATGAGAAGCAATGAAGAG+GGG + chr5_2:61137894-61137913 None:intergenic 45.0%
CGCAGCAGCAACATTATCTA+AGG - chr5_2:61137929-61137948 Msa0779790:three_prime_UTR 45.0%
AGAAAAGTAGATGGATCGGC+GGG + chr5_2:61138093-61138112 None:intergenic 45.0%
GAGAAAAGTAGATGGATCGG+CGG + chr5_2:61138094-61138113 None:intergenic 45.0%
GTTGTTGTCATGTGACTGGA+AGG - chr5_2:61138243-61138262 Msa0779790:three_prime_UTR 45.0%
! TTACACAAGAGGCTGTTTCC+AGG + chr5_2:61138283-61138302 None:intergenic 45.0%
CAGCCTCTTGTGTAAAAAGC+AGG - chr5_2:61138288-61138307 Msa0779790:three_prime_UTR 45.0%
GCTGCGTACAATACACCAAA+TGG - chr5_2:61138316-61138335 Msa0779790:three_prime_UTR 45.0%
GCGTACAATACACCAAATGG+TGG - chr5_2:61138319-61138338 Msa0779790:three_prime_UTR 45.0%
ATCTCCTAAAAAGGGCAACC+CGG + chr5_2:61138386-61138405 None:intergenic 45.0%
TAAACTAGAGGGAGACCAGA+AGG - chr5_2:61138542-61138561 Msa0779790:three_prime_UTR 45.0%
CCCTTAAGCAATCGTTGTTC+TGG + chr5_2:61138653-61138672 None:intergenic 45.0%
ACAGATTAATGTGCGCTGAG+TGG + chr5_2:61138929-61138948 None:intergenic 45.0%
AGGAGATGTTTCGAGGAGAT+GGG + chr5_2:61139034-61139053 None:intergenic 45.0%
! TTGAGAGGATGTTTGCTGCT+TGG + chr5_2:61139134-61139153 None:intergenic 45.0%
TTGGGATAATGTTTGGGAGG+AGG + chr5_2:61137773-61137792 None:intergenic 45.0%
CACTTGGGATAATGTTTGGG+AGG + chr5_2:61137776-61137795 None:intergenic 45.0%
GCATGAGAAGCAATGAAGAG+GGG + chr5_2:61137894-61137913 None:intergenic 45.0%
CGCAGCAGCAACATTATCTA+AGG - chr5_2:61137929-61137948 Msa0779790:three_prime_UTR 45.0%
AGAAAAGTAGATGGATCGGC+GGG + chr5_2:61138093-61138112 None:intergenic 45.0%
GAGAAAAGTAGATGGATCGG+CGG + chr5_2:61138094-61138113 None:intergenic 45.0%
GTTGTTGTCATGTGACTGGA+AGG - chr5_2:61138243-61138262 Msa0779790:three_prime_UTR 45.0%
! TTACACAAGAGGCTGTTTCC+AGG + chr5_2:61138283-61138302 None:intergenic 45.0%
CAGCCTCTTGTGTAAAAAGC+AGG - chr5_2:61138288-61138307 Msa0779790:three_prime_UTR 45.0%
GCTGCGTACAATACACCAAA+TGG - chr5_2:61138316-61138335 Msa0779790:three_prime_UTR 45.0%
GCGTACAATACACCAAATGG+TGG - chr5_2:61138319-61138338 Msa0779790:three_prime_UTR 45.0%
ATCTCCTAAAAAGGGCAACC+CGG + chr5_2:61138386-61138405 None:intergenic 45.0%
TAAACTAGAGGGAGACCAGA+AGG - chr5_2:61138542-61138561 Msa0779790:three_prime_UTR 45.0%
CCCTTAAGCAATCGTTGTTC+TGG + chr5_2:61138653-61138672 None:intergenic 45.0%
ACAGATTAATGTGCGCTGAG+TGG + chr5_2:61138929-61138948 None:intergenic 45.0%
AGGAGATGTTTCGAGGAGAT+GGG + chr5_2:61139034-61139053 None:intergenic 45.0%
! TTGAGAGGATGTTTGCTGCT+TGG + chr5_2:61139134-61139153 None:intergenic 45.0%
TGAGAAGCAATGAAGAGGGG+AGG + chr5_2:61137891-61137910 None:intergenic 50.0%
! CTATGTGGCATGGTCTTGCT+TGG + chr5_2:61137988-61138007 None:intergenic 50.0%
ACAAGCTAGAGGGGTAACCT+TGG - chr5_2:61138207-61138226 Msa0779790:three_prime_UTR 50.0%
CAACTTTACCAGTTGCGCCA+AGG + chr5_2:61138227-61138246 None:intergenic 50.0%
GTCATGTGACTGGAAGGTCA+CGG - chr5_2:61138249-61138268 Msa0779790:three_prime_UTR 50.0%
TCATGTGACTGGAAGGTCAC+GGG - chr5_2:61138250-61138269 Msa0779790:three_prime_UTR 50.0%
GCGCTGAGTGGAGATTTCAA+AGG + chr5_2:61138917-61138936 None:intergenic 50.0%
GGAGATGTTTCGAGGAGATG+GGG + chr5_2:61139033-61139052 None:intergenic 50.0%
GAGGAGATGTTTCGAGGAGA+TGG + chr5_2:61139035-61139054 None:intergenic 50.0%
GTTGCAGAGGAGATGTTTCG+AGG + chr5_2:61139041-61139060 None:intergenic 50.0%
! TGCTGCTTGGTTGCTTTCCA+TGG + chr5_2:61139121-61139140 None:intergenic 50.0%
TGTGTAGAGAGAGGAGTCGA+CGG + chr5_2:61139181-61139200 None:intergenic 50.0%
TCCTCTCTCTACACAGTCGA+TGG - chr5_2:61139186-61139205 Msa0779790:CDS 50.0%
! ACCATCGACTGTGTAGAGAG+AGG + chr5_2:61139190-61139209 None:intergenic 50.0%
TCTCTCTACACAGTCGATGG+TGG - chr5_2:61139189-61139208 Msa0779790:CDS 50.0%
!! TTTTGAAGAGGATGGCGCGA+TGG + chr5_2:61139215-61139234 None:intergenic 50.0%
TGAGAAGCAATGAAGAGGGG+AGG + chr5_2:61137891-61137910 None:intergenic 50.0%
! CTATGTGGCATGGTCTTGCT+TGG + chr5_2:61137988-61138007 None:intergenic 50.0%
ACAAGCTAGAGGGGTAACCT+TGG - chr5_2:61138207-61138226 Msa0779790:three_prime_UTR 50.0%
CAACTTTACCAGTTGCGCCA+AGG + chr5_2:61138227-61138246 None:intergenic 50.0%
GTCATGTGACTGGAAGGTCA+CGG - chr5_2:61138249-61138268 Msa0779790:three_prime_UTR 50.0%
TCATGTGACTGGAAGGTCAC+GGG - chr5_2:61138250-61138269 Msa0779790:three_prime_UTR 50.0%
GCGCTGAGTGGAGATTTCAA+AGG + chr5_2:61138917-61138936 None:intergenic 50.0%
GGAGATGTTTCGAGGAGATG+GGG + chr5_2:61139033-61139052 None:intergenic 50.0%
GAGGAGATGTTTCGAGGAGA+TGG + chr5_2:61139035-61139054 None:intergenic 50.0%
GTTGCAGAGGAGATGTTTCG+AGG + chr5_2:61139041-61139060 None:intergenic 50.0%
! TGCTGCTTGGTTGCTTTCCA+TGG + chr5_2:61139121-61139140 None:intergenic 50.0%
TGTGTAGAGAGAGGAGTCGA+CGG + chr5_2:61139181-61139200 None:intergenic 50.0%
TCCTCTCTCTACACAGTCGA+TGG - chr5_2:61139186-61139205 Msa0779790:CDS 50.0%
! ACCATCGACTGTGTAGAGAG+AGG + chr5_2:61139190-61139209 None:intergenic 50.0%
TCTCTCTACACAGTCGATGG+TGG - chr5_2:61139189-61139208 Msa0779790:CDS 50.0%
!! TTTTGAAGAGGATGGCGCGA+TGG + chr5_2:61139215-61139234 None:intergenic 50.0%
GAAGCAATGAAGAGGGGAGG+TGG + chr5_2:61137888-61137907 None:intergenic 55.0%
AAGGTCACGGGTTCAAGTCC+TGG - chr5_2:61138262-61138281 Msa0779790:three_prime_UTR 55.0%
CTAAAGCTCCCGCATACGCA+GGG + chr5_2:61138359-61138378 None:intergenic 55.0%
ACTAAAGCTCCCGCATACGC+AGG + chr5_2:61138360-61138379 None:intergenic 55.0%
! ATGCGGGAGCTTTAGTGCAC+CGG - chr5_2:61138364-61138383 Msa0779790:three_prime_UTR 55.0%
! TGCACCGGGTTGCCCTTTTT+AGG - chr5_2:61138379-61138398 Msa0779790:three_prime_UTR 55.0%
GAAGCAATGAAGAGGGGAGG+TGG + chr5_2:61137888-61137907 None:intergenic 55.0%
AAGGTCACGGGTTCAAGTCC+TGG - chr5_2:61138262-61138281 Msa0779790:three_prime_UTR 55.0%
CTAAAGCTCCCGCATACGCA+GGG + chr5_2:61138359-61138378 None:intergenic 55.0%
ACTAAAGCTCCCGCATACGC+AGG + chr5_2:61138360-61138379 None:intergenic 55.0%
! ATGCGGGAGCTTTAGTGCAC+CGG - chr5_2:61138364-61138383 Msa0779790:three_prime_UTR 55.0%
! TGCACCGGGTTGCCCTTTTT+AGG - chr5_2:61138379-61138398 Msa0779790:three_prime_UTR 55.0%
GGGGAGGTGGAGACAAGTCA+TGG + chr5_2:61137875-61137894 None:intergenic 60.0%
!! GTAGATGGATCGGCGGGTTG+TGG + chr5_2:61138087-61138106 None:intergenic 60.0%
AGGGGTAACCTTGGCGCAAC+TGG - chr5_2:61138216-61138235 Msa0779790:three_prime_UTR 60.0%
! CAAATGGTGGGACCCCTTCC+CGG - chr5_2:61138332-61138351 Msa0779790:three_prime_UTR 60.0%
! TGCGGGAGCTTTAGTGCACC+GGG - chr5_2:61138365-61138384 Msa0779790:three_prime_UTR 60.0%
CGACGCGTGCTAGGTTTGAG+AGG + chr5_2:61139149-61139168 None:intergenic 60.0%
AGAGGAGTCGACGGAGGTTG+CGG + chr5_2:61139172-61139191 None:intergenic 60.0%
GTAGAGAGAGGAGTCGACGG+AGG + chr5_2:61139178-61139197 None:intergenic 60.0%
GGGGAGGTGGAGACAAGTCA+TGG + chr5_2:61137875-61137894 None:intergenic 60.0%
!! GTAGATGGATCGGCGGGTTG+TGG + chr5_2:61138087-61138106 None:intergenic 60.0%
AGGGGTAACCTTGGCGCAAC+TGG - chr5_2:61138216-61138235 Msa0779790:three_prime_UTR 60.0%
! CAAATGGTGGGACCCCTTCC+CGG - chr5_2:61138332-61138351 Msa0779790:three_prime_UTR 60.0%
! TGCGGGAGCTTTAGTGCACC+GGG - chr5_2:61138365-61138384 Msa0779790:three_prime_UTR 60.0%
CGACGCGTGCTAGGTTTGAG+AGG + chr5_2:61139149-61139168 None:intergenic 60.0%
AGAGGAGTCGACGGAGGTTG+CGG + chr5_2:61139172-61139191 None:intergenic 60.0%
GTAGAGAGAGGAGTCGACGG+AGG + chr5_2:61139178-61139197 None:intergenic 60.0%
!! TGGATCGGCGGGTTGTGGCA+GGG + chr5_2:61138082-61138101 None:intergenic 65.0%
!! ATGGATCGGCGGGTTGTGGC+AGG + chr5_2:61138083-61138102 None:intergenic 65.0%
CGGGAAGGGGTCCCACCATT+TGG + chr5_2:61138334-61138353 None:intergenic 65.0%
CATACGCAGGGTCCGGGAAG+GGG + chr5_2:61138347-61138366 None:intergenic 65.0%
GCATACGCAGGGTCCGGGAA+GGG + chr5_2:61138348-61138367 None:intergenic 65.0%
CTTCCCGGACCCTGCGTATG+CGG - chr5_2:61138347-61138366 Msa0779790:three_prime_UTR 65.0%
TTCCCGGACCCTGCGTATGC+GGG - chr5_2:61138348-61138367 Msa0779790:three_prime_UTR 65.0%
!! TGGATCGGCGGGTTGTGGCA+GGG + chr5_2:61138082-61138101 None:intergenic 65.0%
!! ATGGATCGGCGGGTTGTGGC+AGG + chr5_2:61138083-61138102 None:intergenic 65.0%
CGGGAAGGGGTCCCACCATT+TGG + chr5_2:61138334-61138353 None:intergenic 65.0%
CATACGCAGGGTCCGGGAAG+GGG + chr5_2:61138347-61138366 None:intergenic 65.0%
GCATACGCAGGGTCCGGGAA+GGG + chr5_2:61138348-61138367 None:intergenic 65.0%
CTTCCCGGACCCTGCGTATG+CGG - chr5_2:61138347-61138366 Msa0779790:three_prime_UTR 65.0%
TTCCCGGACCCTGCGTATGC+GGG - chr5_2:61138348-61138367 Msa0779790:three_prime_UTR 65.0%
CGCATACGCAGGGTCCGGGA+AGG + chr5_2:61138349-61138368 None:intergenic 70.0%
CTCCCGCATACGCAGGGTCC+GGG + chr5_2:61138353-61138372 None:intergenic 70.0%
GCTCCCGCATACGCAGGGTC+CGG + chr5_2:61138354-61138373 None:intergenic 70.0%
AGGTTGCGGCGACGCGTGCT+AGG + chr5_2:61139158-61139177 None:intergenic 70.0%
CGCATACGCAGGGTCCGGGA+AGG + chr5_2:61138349-61138368 None:intergenic 70.0%
CTCCCGCATACGCAGGGTCC+GGG + chr5_2:61138353-61138372 None:intergenic 70.0%
GCTCCCGCATACGCAGGGTC+CGG + chr5_2:61138354-61138373 None:intergenic 70.0%
AGGTTGCGGCGACGCGTGCT+AGG + chr5_2:61139158-61139177 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 61137727 61139486 61137727 ID=Msa0779790;Name=Msa0779790
chr5_2 mRNA 61137727 61139486 61137727 ID=Msa0779790-mRNA-1;Parent=Msa0779790;Name=Msa0779790-mRNA-1;_AED=0.31;_eAED=0.31;_QI=147|1|1|1|0|0.5|2|899|122
chr5_2 exon 61137727 61138746 61137727 ID=Msa0779790-mRNA-1:exon:18044;Parent=Msa0779790-mRNA-1
chr5_2 exon 61139092 61139486 61139092 ID=Msa0779790-mRNA-1:exon:18043;Parent=Msa0779790-mRNA-1
chr5_2 five_prime_UTR 61139340 61139486 61139340 ID=Msa0779790-mRNA-1:five_prime_utr;Parent=Msa0779790-mRNA-1
chr5_2 CDS 61139092 61139339 61139092 ID=Msa0779790-mRNA-1:cds;Parent=Msa0779790-mRNA-1
chr5_2 CDS 61138626 61138746 61138626 ID=Msa0779790-mRNA-1:cds;Parent=Msa0779790-mRNA-1
chr5_2 three_prime_UTR 61137727 61138625 61137727 ID=Msa0779790-mRNA-1:three_prime_utr;Parent=Msa0779790-mRNA-1
Gene Sequence

>Msa0779790

ATGACTTGTCTCCACCTCCCCTCTTCATTGCTTCTCATGCATACAAAACTCAAACCGCAGCAGCAACATTATCTAAGGATGGAGCACAACACAAAACTACTTTGGGGAGAACCAAGCAAGACCATGCCACATAGTAAGCACTTTTCTTCAGTAAGTTCATTAAGGACCCAGGCAATTCCAGATATCATTGTTGTTGCTGCTACTTCCCTGCCACAACCCGCCGATCCATCTACTTTTCTCCCAGTAAGTGCCCTGCTTATATCAGTATACTTCATAGCAAATTTCGTCGTGCCAGATTTTATAAGCAAGTATTTTGGATTTGATAAACTAGAGGGAGACCAGAAGGTTGATGATGCAAAAGATAAATAG

Protein sequence

>Msa0779790

MTCLHLPSSLLLMHTKLKPQQQHYLRMEHNTKLLWGEPSKTMPHSKHFSSVSSLRTQAIPDIIVVAATSLPQPADPSTFLPVSALLISVYFIANFVVPDFISKYFGFDKLEGDQKVDDAKDK*