AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0371050


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0371050 MtrunA17_Chr8g0347221 94.203 483 11 2 1 467 1 482 0.0 888
Msa0371050 MtrunA17_Chr7g0249921 36.994 173 100 3 86 253 95 263 8.97e-28 113
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0371050 AT4G01050.1 57.783 469 173 12 1 457 1 456 3.03e-150 436
Msa0371050 AT4G01050.2 57.783 469 173 12 1 457 42 497 1.92e-149 436
Msa0371050 AT3G25480.1 36.686 169 105 1 79 247 63 229 2.00e-27 110

Find 128 sgRNAs with CRISPR-Local

Find 289 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGCTTTCTTTGAAGTTTA+AGG 0.087089 3_1:-68946859 Msa0371050:CDS
TTTGTCTCGGGGACAATTTC+AGG 0.169954 3_1:+68944132 None:intergenic
TTTGTCTCGGGGACAATTTC+AGG 0.169954 3_1:+68944180 None:intergenic
TTGATACATACTGAGTATTT+TGG 0.174722 3_1:+68943378 None:intergenic
TAAATCTGCTTATGCAATTA+AGG 0.182748 3_1:-68946078 Msa0371050:CDS
TCCAAGCTCAATGCTTTCTT+TGG 0.236005 3_1:+68945912 None:intergenic
TTCGGCACAGAGTTTATTTC+AGG 0.250133 3_1:+68944084 None:intergenic
AAAGCATTGAGCTTGGATTT+TGG 0.280576 3_1:-68945906 Msa0371050:CDS
CTCTCAAAGTTTGGAACTTA+AGG 0.298680 3_1:+68947499 None:intergenic
CTTGGGATTGCTGCAGCTAC+TGG 0.311101 3_1:-68945533 Msa0371050:CDS
GGTGGTGACATTGATGTTAA+TGG 0.311965 3_1:-68947176 Msa0371050:CDS
TGCTGGTGGTGTAGCTATAT+TGG 0.312430 3_1:-68947105 Msa0371050:CDS
GGACAATCTCCTAGTGCTTC+TGG 0.321123 3_1:-68947200 Msa0371050:CDS
CTTTGAGCTTCTAAATTTCA+TGG 0.329325 3_1:-68947527 Msa0371050:five_prime_UTR
TTTGTGAGGCTCTCAAAGTT+TGG 0.332707 3_1:+68947490 None:intergenic
TTAGTAAAGCATTTAACTTT+TGG 0.345594 3_1:-68943036 Msa0371050:three_prime_UTR
TATGTTGATTCATGAGAGTT+TGG 0.360585 3_1:-68943061 Msa0371050:three_prime_UTR
GATGGCTTGGCCGTTACTCT+TGG 0.362120 3_1:-68945551 Msa0371050:CDS
AAGCAGATTTAAATCCGTTA+AGG 0.366536 3_1:+68946090 None:intergenic
ACACCACCAGCAAGAATTAC+AGG 0.373462 3_1:+68947116 None:intergenic
TTGTGGAATGAGTGGCAAAA+TGG 0.375345 3_1:+68947597 None:intergenic
GTCTTATTGTTGGTGGAGGT+TGG 0.375445 3_1:+68944276 None:intergenic
TTTGAAGAAACCTAAGGCTT+GGG 0.375475 3_1:-68947057 Msa0371050:CDS
ATTTCATCAGCAAGCTCCTT+AGG 0.379190 3_1:+68944485 None:intergenic
ATGATGAGTTTGTTTCTTTG+TGG 0.384751 3_1:+68947580 None:intergenic
TTAACATATGAAGAAGCATT+AGG 0.389426 3_1:-68947221 Msa0371050:CDS
GGAGCTTGCTGATGAAATAA+AGG 0.391508 3_1:-68944480 Msa0371050:intron
AGATGAAGGAGGTTTGAAAT+CGG 0.392959 3_1:+68943468 None:intergenic
CTGGCAGGATTATAGATTGT+AGG 0.394531 3_1:+68943339 None:intergenic
TTCTTCAAACCACCAACATT+TGG 0.394999 3_1:+68946933 None:intergenic
AGCAGATTTAAATCCGTTAA+GGG 0.402051 3_1:+68946091 None:intergenic
AGTAAAAGAATGTGTTGTTT+TGG 0.402239 3_1:+68947645 None:intergenic
GCTCAGTTGCTTGATATAAG+AGG 0.403750 3_1:-68946984 Msa0371050:CDS
GGGTATGGTGAAAGTGGTTT+AGG 0.407461 3_1:+68944027 None:intergenic
GTATGTTGAAGATGTTCTTC+TGG 0.410590 3_1:+68943320 None:intergenic
ATGGCTTGGCCGTTACTCTT+GGG 0.412279 3_1:-68945550 Msa0371050:CDS
ATGAAATTTAGAAGCTCAAA+GGG 0.415470 3_1:+68947529 None:intergenic
GTGAAACTCTAGGGCTTTGA+AGG 0.419099 3_1:+68943439 None:intergenic
GAGAACCCTGTAATTCTTGC+TGG 0.420485 3_1:-68947122 Msa0371050:CDS
GCAGAGTTAGTTACCCTTAA+CGG 0.420544 3_1:-68946104 Msa0371050:CDS
GAACACCAAGGTTGCTCCTA+AGG 0.431093 3_1:-68944501 Msa0371050:CDS
GAAACAATTCTCCAACTTGT+AGG 0.431254 3_1:-68945379 Msa0371050:CDS
AGCTATATTGGCAGTGCCAT+TGG 0.432928 3_1:-68947093 Msa0371050:CDS
TCAGTGGCAGTAACTTATAA+AGG 0.436972 3_1:-68946906 Msa0371050:CDS
GATTCAACACCCCAAGCCTT+AGG 0.440084 3_1:+68947047 None:intergenic
GGGTTTGGTGTGTAATGCAA+TGG 0.441968 3_1:+68947669 None:intergenic
CTTCAACATACATGAAACTT+AGG 0.443694 3_1:-68943308 Msa0371050:three_prime_UTR
GATTGCTGCAGCTACTGGAT+TGG 0.443820 3_1:-68945528 Msa0371050:CDS
GTTGAAGATGTTCTTCTGGC+AGG 0.447489 3_1:+68943324 None:intergenic
GAAGGAGATGGAGATGAAGG+AGG 0.453134 3_1:+68943457 None:intergenic
ATTGCTGCAGCTACTGGATT+GGG 0.454710 3_1:-68945527 Msa0371050:CDS
ACAGAGTTTATTTCAGGAGC+AGG 0.455724 3_1:+68944090 None:intergenic
TCTCCTAGTGCTTCTGGTGG+TGG 0.456230 3_1:-68947194 Msa0371050:CDS
GTGATGGAAGCCAGATTTGA+TGG 0.456441 3_1:-68946143 Msa0371050:intron
TTCTTCATATGTTAAAGCAT+TGG 0.457715 3_1:+68947229 None:intergenic
GATGAAGGAGGTTTGAAATC+GGG 0.461874 3_1:+68943469 None:intergenic
ATGAACAATGTAGTATTCTC+AGG 0.471873 3_1:+68946834 None:intergenic
TGCAGAATAGTGGTCTTCCT+TGG 0.474017 3_1:-68945941 Msa0371050:intron
TATAAAGGTGATGATAAGCC+AGG 0.475049 3_1:-68946891 Msa0371050:CDS
CCGCCAGCTGTAGCAAGCTC+TGG 0.476058 3_1:+68944228 None:intergenic
ATTTGATGGGAACTCTGAAC+TGG 0.481515 3_1:-68946129 Msa0371050:CDS
TTTGAAGGAGATGGAGATGA+AGG 0.482325 3_1:+68943454 None:intergenic
CTCTAGGGCTTTGAAGGAGA+TGG 0.485058 3_1:+68943445 None:intergenic
GGTTTGGTGTGTAATGCAAT+GGG 0.486379 3_1:+68947670 None:intergenic
AGTCCAGAGCTTGCTACAGC+TGG 0.490256 3_1:-68944231 Msa0371050:CDS
TGCAGGGAGAGTCTTATTGT+TGG 0.491625 3_1:+68944266 None:intergenic
ACCAAAGAAAGCATTGAGCT+TGG 0.491928 3_1:-68945913 Msa0371050:CDS
GGTGAAAATAGTAGAATTGA+GGG 0.495638 3_1:+68947436 None:intergenic
AGGGAGAGTCTTATTGTTGG+TGG 0.496184 3_1:+68944269 None:intergenic
CATTGGACCAACCTCAGAAA+AGG 0.496352 3_1:+68945496 None:intergenic
GGTTTAGTGGCACAAATGTA+AGG 0.504713 3_1:+68943227 None:intergenic
TGTGCCGAAAACTGAAACAA+AGG 0.505309 3_1:-68944070 Msa0371050:CDS
GAGAGTCTTATTGTTGGTGG+AGG 0.508957 3_1:+68944272 None:intergenic
GCTTTCTTTGGTTCAGTCCA+AGG 0.508994 3_1:+68945924 None:intergenic
GATACTATCAATGATGCAAT+CGG 0.519921 3_1:-68945873 Msa0371050:CDS
TGTAGTACAAAATTATGCTA+TGG 0.521992 3_1:-68947462 Msa0371050:exon
GAAAGTGGTTTAGGCTGCAC+AGG 0.522973 3_1:+68944036 None:intergenic
TATGACATTACATATGGGTA+TGG 0.525499 3_1:+68944012 None:intergenic
ATGGGAGAAGATAGAAAGAG+AGG 0.526558 3_1:+68947616 None:intergenic
CTTCGTACAAGTGAAACTCT+AGG 0.528032 3_1:+68943429 None:intergenic
ACATATGGGTATGGTGAAAG+TGG 0.528445 3_1:+68944021 None:intergenic
CTGTCAGATAGCACAGAAAG+AGG 0.530271 3_1:+68947413 None:intergenic
TGTGGAATGAGTGGCAAAAT+GGG 0.530600 3_1:+68947598 None:intergenic
AATTTAGAAGCTCAAAGGGT+TGG 0.532878 3_1:+68947533 None:intergenic
GGGTGAAAATAGTAGAATTG+AGG 0.533070 3_1:+68947435 None:intergenic
CATGAAATTTAGAAGCTCAA+AGG 0.535206 3_1:+68947528 None:intergenic
GCAATTAAGGATGGTGCAGA+AGG 0.540296 3_1:-68946065 Msa0371050:CDS
TTGACTGAGATTAGACAAGT+TGG 0.542880 3_1:-68946960 Msa0371050:CDS
AGAAGGACCACAAGGATGGC+AGG 0.544881 3_1:-68946048 Msa0371050:intron
AAGCTCCTTAGGAGCAACCT+TGG 0.546190 3_1:+68944496 None:intergenic
ATTGCAGGAATCTGATGGCT+TGG 0.548308 3_1:-68945564 Msa0371050:intron
ACTGAGATTAGACAAGTTGG+TGG 0.549104 3_1:-68946957 Msa0371050:CDS
TCTTGAACTCTGCAGAATAG+TGG 0.549522 3_1:-68945951 Msa0371050:intron
TACGAAGAGAATTCTATAGC+AGG 0.550738 3_1:-68943413 Msa0371050:three_prime_UTR
TAATGCAATGGGTGACACTT+AGG 0.561413 3_1:+68947681 None:intergenic
TGTCAGATAGCACAGAAAGA+GGG 0.564800 3_1:+68947414 None:intergenic
TTCCGGGAAAATTAGGACAT+CGG 0.564881 3_1:-68944312 Msa0371050:intron
TGATTGTGAACATTGTGTTG+TGG 0.565253 3_1:-68943197 Msa0371050:three_prime_UTR
ATGCAAAATTAGGTGCTGAT+GGG 0.571276 3_1:-68947010 Msa0371050:CDS
TATGCAAAATTAGGTGCTGA+TGG 0.573919 3_1:-68947011 Msa0371050:CDS
TGATGGAAGCCAGATTTGAT+GGG 0.580060 3_1:-68946142 Msa0371050:intron
TTCGTACAAGTGAAACTCTA+GGG 0.581063 3_1:+68943430 None:intergenic
TTGCAGCTGATCCTACAAGT+TGG 0.583303 3_1:+68945368 None:intergenic
TTGAAGAAACCTAAGGCTTG+GGG 0.585405 3_1:-68947056 Msa0371050:CDS
CAAGAAGCTTCTATTTGCTG+AGG 0.588875 3_1:-68945329 Msa0371050:intron
TTGTTTCTTTGTGGAATGAG+TGG 0.592557 3_1:+68947589 None:intergenic
AACCCTGTAATTCTTGCTGG+TGG 0.593908 3_1:-68947119 Msa0371050:CDS
TCTGCTTATGCAATTAAGGA+TGG 0.593981 3_1:-68946074 Msa0371050:CDS
TTGTGAACATTGTGTTGTGG+AGG 0.597009 3_1:-68943194 Msa0371050:three_prime_UTR
GTGCAGAAGGACCACAAGGA+TGG 0.597232 3_1:-68946052 Msa0371050:CDS
GGTTGATTGCAGGAATCTGA+TGG 0.599719 3_1:-68945569 Msa0371050:intron
CCAGAGCTTGCTACAGCTGG+CGG 0.602467 3_1:-68944228 Msa0371050:CDS
GTCAGATAGCACAGAAAGAG+GGG 0.603525 3_1:+68947415 None:intergenic
TGCAGCAATCCCAAGAGTAA+CGG 0.604148 3_1:+68945541 None:intergenic
GTTGGTGGACCAAATGTTGG+TGG 0.607555 3_1:-68946942 Msa0371050:CDS
AGTACAAAATTATGCTATGG+AGG 0.608891 3_1:-68947459 Msa0371050:exon
AAAATCTGAGACAAAACCAA+TGG 0.615330 3_1:+68947077 None:intergenic
TCACCACCACCAGAAGCACT+AGG 0.618550 3_1:+68947191 None:intergenic
TGTACTACAGAAAGTTTGTG+AGG 0.620051 3_1:+68947476 None:intergenic
ATAAATACCTGCCATCCTTG+TGG 0.630600 3_1:+68946041 None:intergenic
ATAAAGGTGATGATAAGCCA+GGG 0.631344 3_1:-68946890 Msa0371050:CDS
CACCACCAGCAAGAATTACA+GGG 0.636596 3_1:+68947117 None:intergenic
CAAGTTGGTGGACCAAATGT+TGG 0.652710 3_1:-68946945 Msa0371050:CDS
CAATCTCCTAGTGCTTCTGG+TGG 0.655117 3_1:-68947197 Msa0371050:CDS
GATGGTGCAGAAGGACCACA+AGG 0.670156 3_1:-68946056 Msa0371050:CDS
TGGTTTGAAGAAGAAATCAG+TGG 0.684337 3_1:-68946922 Msa0371050:CDS
TCAGTTGTGAATGTTAACAA+TGG 0.693297 3_1:-68947260 Msa0371050:CDS
GGAAAATTAGGACATCGGAA+AGG 0.694122 3_1:-68944307 Msa0371050:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTCTTAAATTATTATTAG+TGG - chr3_1:68944088-68944107 Msa0371050:CDS 10.0%
!!! TATTCTTTAATTTAATAGAA+GGG + chr3_1:68944867-68944886 None:intergenic 10.0%
!! TATTAAATTAAAGAATACTA+TGG - chr3_1:68944870-68944889 Msa0371050:intron 10.0%
!! AACAATAATAATAAATGAAA+AGG - chr3_1:68945751-68945770 Msa0371050:intron 10.0%
!!! TCATTAAATTTTTAATTTGA+TGG - chr3_1:68946046-68946065 Msa0371050:intron 10.0%
!!! TTATTTTCTCAAATTATTAT+CGG - chr3_1:68946971-68946990 Msa0371050:CDS 10.0%
!! ATATGAATATAAAACAAAAT+TGG + chr3_1:68947081-68947100 None:intergenic 10.0%
!!! TTTATCAAAGAATTTTCAAA+AGG - chr3_1:68943308-68943327 Msa0371050:three_prime_UTR 15.0%
!!! TTATCAAAGAATTTTCAAAA+GGG - chr3_1:68943309-68943328 Msa0371050:three_prime_UTR 15.0%
!!! GTATTCTTTAATTTAATAGA+AGG + chr3_1:68944868-68944887 None:intergenic 15.0%
!! ATAAATTATTATGTTTGTGT+CGG - chr3_1:68945518-68945537 Msa0371050:CDS 15.0%
!!! TTAATATTGTTTTCTTTGAA+TGG - chr3_1:68946273-68946292 Msa0371050:intron 15.0%
!! AAAAATGCTTATGCAAAATT+AGG - chr3_1:68943591-68943610 Msa0371050:intron 20.0%
!!! CAATTTTATTTGCAGAATTT+TGG - chr3_1:68943826-68943845 Msa0371050:intron 20.0%
!! TATATCATAATTCATAAGCA+TGG + chr3_1:68943870-68943889 None:intergenic 20.0%
!! TGAGTGTTTATAATTAATGT+CGG - chr3_1:68945021-68945040 Msa0371050:intron 20.0%
!! ATAAACATACAACAGAAAAA+TGG + chr3_1:68945395-68945414 None:intergenic 20.0%
!!! ATATATGAGTTAGTTTTGTA+AGG - chr3_1:68945477-68945496 Msa0371050:intron 20.0%
!!! TATATGAGTTAGTTTTGTAA+GGG - chr3_1:68945478-68945497 Msa0371050:intron 20.0%
!!! TTGAATTTCTTTTACCTATT+TGG + chr3_1:68945590-68945609 None:intergenic 20.0%
!! TAGGTAAAAGAAATTCAAAA+TGG - chr3_1:68945592-68945611 Msa0371050:intron 20.0%
!! TAAGATTAATCCAATTATAG+AGG + chr3_1:68945652-68945671 None:intergenic 20.0%
!! CTATAATTGGATTAATCTTA+CGG - chr3_1:68945652-68945671 Msa0371050:intron 20.0%
!!! TATAAGATCATATCTTTTTC+AGG + chr3_1:68945714-68945733 None:intergenic 20.0%
!!! TAAATTTTTAATTTGATGGC+AGG - chr3_1:68946050-68946069 Msa0371050:CDS 20.0%
!! AAAACAATATTAAACAGGAA+GGG + chr3_1:68946266-68946285 None:intergenic 20.0%
!! CAAAGAAAACAATATTAAAC+AGG + chr3_1:68946271-68946290 None:intergenic 20.0%
!! GAAATTATGACATTACATAT+GGG + chr3_1:68946607-68946626 None:intergenic 20.0%
!! TGAAATTATGACATTACATA+TGG + chr3_1:68946608-68946627 None:intergenic 20.0%
!! ATCCAAAAATCTATCAAATA+GGG + chr3_1:68946716-68946735 None:intergenic 20.0%
!! GATGAAATACTTAATGAAAT+AGG - chr3_1:68946888-68946907 Msa0371050:CDS 20.0%
!!! TTAGTAAAGCATTTAACTTT+TGG - chr3_1:68947575-68947594 Msa0371050:five_prime_UTR 20.0%
!!! AGTAAAAGAATGTGTTGTTT+TGG + chr3_1:68942969-68942988 None:intergenic 25.0%
! ATGAAATTTAGAAGCTCAAA+GGG + chr3_1:68943085-68943104 None:intergenic 25.0%
! TGTAGTACAAAATTATGCTA+TGG - chr3_1:68943149-68943168 Msa0371050:three_prime_UTR 25.0%
! TTCTTCATATGTTAAAGCAT+TGG + chr3_1:68943385-68943404 None:intergenic 25.0%
!!! TTAACATATGAAGAAGCATT+AGG - chr3_1:68943390-68943409 Msa0371050:three_prime_UTR 25.0%
! GAAAAATTGGAAGATAAGTT+AGG - chr3_1:68943974-68943993 Msa0371050:intron 25.0%
! TTGAATGTAATCACATATGT+TGG + chr3_1:68944060-68944079 None:intergenic 25.0%
! TAAATCTGCTTATGCAATTA+AGG - chr3_1:68944533-68944552 Msa0371050:CDS 25.0%
! ATTTGAGCTTTCTCAAATTA+AGG - chr3_1:68944925-68944944 Msa0371050:intron 25.0%
! TATTATTGCATGTTGAGAAA+AGG + chr3_1:68945156-68945175 None:intergenic 25.0%
! CAACATGCAATAATACATTA+TGG - chr3_1:68945161-68945180 Msa0371050:intron 25.0%
!!! ATATGAGTTAGTTTTGTAAG+GGG - chr3_1:68945479-68945498 Msa0371050:intron 25.0%
! ATTAAGTGAAATAGGTAAAC+AGG - chr3_1:68945549-68945568 Msa0371050:CDS 25.0%
!! AAGTTAATTTTGTGCCAAAT+AGG - chr3_1:68945573-68945592 Msa0371050:intron 25.0%
! ATTACATAAACAAGAAGAGT+TGG - chr3_1:68945809-68945828 Msa0371050:intron 25.0%
! GAAAAATGTTCTTCACTATT+AGG + chr3_1:68945975-68945994 None:intergenic 25.0%
! GAAAACAATATTAAACAGGA+AGG + chr3_1:68946267-68946286 None:intergenic 25.0%
!! TTTTCTTTGAATGGAATTTC+CGG - chr3_1:68946282-68946301 Msa0371050:intron 25.0%
! GATCCAAAAATCTATCAAAT+AGG + chr3_1:68946717-68946736 None:intergenic 25.0%
! TTAATTGAACGTAACTACAT+GGG + chr3_1:68946950-68946969 None:intergenic 25.0%
! ATTAATTGAACGTAACTACA+TGG + chr3_1:68946951-68946970 None:intergenic 25.0%
!! TTGATACATACTGAGTATTT+TGG + chr3_1:68947236-68947255 None:intergenic 25.0%
! AATGTTCACAATCACAAAAA+AGG + chr3_1:68947408-68947427 None:intergenic 25.0%
!!! AAAGAATGTGTTGTTTTGGT+GGG + chr3_1:68942965-68942984 None:intergenic 30.0%
!!! AAAAGAATGTGTTGTTTTGG+TGG + chr3_1:68942966-68942985 None:intergenic 30.0%
! ATGATGAGTTTGTTTCTTTG+TGG + chr3_1:68943034-68943053 None:intergenic 30.0%
CATGAAATTTAGAAGCTCAA+AGG + chr3_1:68943086-68943105 None:intergenic 30.0%
CTTTGAGCTTCTAAATTTCA+TGG - chr3_1:68943084-68943103 Msa0371050:three_prime_UTR 30.0%
AGTACAAAATTATGCTATGG+AGG - chr3_1:68943152-68943171 Msa0371050:three_prime_UTR 30.0%
GGTGAAAATAGTAGAATTGA+GGG + chr3_1:68943178-68943197 None:intergenic 30.0%
! CTTTGCATGAAAATTTTGTG+GGG + chr3_1:68943239-68943258 None:intergenic 30.0%
! GCTTTGCATGAAAATTTTGT+GGG + chr3_1:68943240-68943259 None:intergenic 30.0%
! AGCTTTGCATGAAAATTTTG+TGG + chr3_1:68943241-68943260 None:intergenic 30.0%
TCAGTTGTGAATGTTAACAA+TGG - chr3_1:68943351-68943370 Msa0371050:three_prime_UTR 30.0%
!! GGTTTTGTAGATAGTGTTAT+AGG - chr3_1:68943456-68943475 Msa0371050:CDS 30.0%
! AAAATCTGAGACAAAACCAA+TGG + chr3_1:68943537-68943556 None:intergenic 30.0%
!! TCAGATTTTGAAGAAACCTA+AGG - chr3_1:68943548-68943567 Msa0371050:intron 30.0%
!! GAAGCTTTCTTTGAAGTTTA+AGG - chr3_1:68943752-68943771 Msa0371050:intron 30.0%
ATGAACAATGTAGTATTCTC+AGG + chr3_1:68943780-68943799 None:intergenic 30.0%
TTGTTCATTCTTGACAAGTA+AGG - chr3_1:68943792-68943811 Msa0371050:intron 30.0%
TAGACTGTAGTAAATAACTG+AGG - chr3_1:68943947-68943966 Msa0371050:intron 30.0%
TAACTGAGGTAGAGAAAAAT+TGG - chr3_1:68943961-68943980 Msa0371050:intron 30.0%
! TTGATCATTACTTCAGCTTT+TGG + chr3_1:68944206-68944225 None:intergenic 30.0%
! AATGACCACAATTTTCTGTT+TGG - chr3_1:68944228-68944247 Msa0371050:CDS 30.0%
TTTCACCAAACAGAAAATTG+TGG + chr3_1:68944236-68944255 None:intergenic 30.0%
! CGTAATTTGACTTAACATGT+GGG - chr3_1:68944368-68944387 Msa0371050:intron 30.0%
! GTAATTTGACTTAACATGTG+GGG - chr3_1:68944369-68944388 Msa0371050:intron 30.0%
AGCAGATTTAAATCCGTTAA+GGG + chr3_1:68944523-68944542 None:intergenic 30.0%
AAGCAGATTTAAATCCGTTA+AGG + chr3_1:68944524-68944543 None:intergenic 30.0%
! TTGGCGAAGATAGAAAATTT+TGG + chr3_1:68944622-68944641 None:intergenic 30.0%
AATATGTGATGTGAGTGTAT+TGG + chr3_1:68944641-68944660 None:intergenic 30.0%
GATACTATCAATGATGCAAT+CGG - chr3_1:68944738-68944757 Msa0371050:intron 30.0%
GGCAATAAGTAATAACTCAT+TGG + chr3_1:68945135-68945154 None:intergenic 30.0%
!! GTAAGTTTGTTTTTCTATGC+AGG - chr3_1:68945304-68945323 Msa0371050:intron 30.0%
AACATACAACAGAAAAATGG+TGG + chr3_1:68945392-68945411 None:intergenic 30.0%
TAATTTACACTCTCGTGTTA+TGG + chr3_1:68945455-68945474 None:intergenic 30.0%
AATTATTATGTTTGTGTCGG+TGG - chr3_1:68945521-68945540 Msa0371050:CDS 30.0%
TGGCTAAGATTAAGTGAAAT+AGG - chr3_1:68945541-68945560 Msa0371050:CDS 30.0%
ACCAACAATACCTCTATAAT+TGG - chr3_1:68945639-68945658 Msa0371050:intron 30.0%
!! TCCAATTATAGAGGTATTGT+TGG + chr3_1:68945643-68945662 None:intergenic 30.0%
GAAGTAAACATAAGCAAACA+CGG + chr3_1:68945909-68945928 None:intergenic 30.0%
!!! CTTGTTTTAGTGTTTTCTTC+CGG + chr3_1:68946077-68946096 None:intergenic 30.0%
! TAATGAGTTTTTGAACACCA+AGG - chr3_1:68946098-68946117 Msa0371050:CDS 30.0%
GCTCTTGCAACTAATTTATA+AGG + chr3_1:68946183-68946202 None:intergenic 30.0%
TTTCTTTGAATGGAATTTCC+GGG - chr3_1:68946283-68946302 Msa0371050:intron 30.0%
TATGACATTACATATGGGTA+TGG + chr3_1:68946602-68946621 None:intergenic 30.0%
AAAAATCTATCAAATAGGGC+TGG + chr3_1:68946712-68946731 None:intergenic 30.0%
! AGCCCTATTTGATAGATTTT+TGG - chr3_1:68946711-68946730 Msa0371050:intron 30.0%
ATCCTTTACTTCACATACTT+AGG + chr3_1:68946748-68946767 None:intergenic 30.0%
TATGTGTAATTGCAAAATGC+AGG + chr3_1:68946833-68946852 None:intergenic 30.0%
! CATCCTTTTCTTGCAAAAAT+GGG + chr3_1:68946872-68946891 None:intergenic 30.0%
! TCATCCTTTTCTTGCAAAAA+TGG + chr3_1:68946873-68946892 None:intergenic 30.0%
CTTCAACATACATGAAACTT+AGG - chr3_1:68947303-68947322 Msa0371050:CDS 30.0%
CAATCACAAAAAAGGTTTAG+TGG + chr3_1:68947400-68947419 None:intergenic 30.0%
!!! TCAGTTTTGAATAAGCAACA+AGG - chr3_1:68947505-68947524 Msa0371050:five_prime_UTR 30.0%
!! TATGTTGATTCATGAGAGTT+TGG - chr3_1:68947550-68947569 Msa0371050:five_prime_UTR 30.0%
! TTGTTTCTTTGTGGAATGAG+TGG + chr3_1:68943025-68943044 None:intergenic 35.0%
AATTTAGAAGCTCAAAGGGT+TGG + chr3_1:68943081-68943100 None:intergenic 35.0%
! CTCTCAAAGTTTGGAACTTA+AGG + chr3_1:68943115-68943134 None:intergenic 35.0%
TGTACTACAGAAAGTTTGTG+AGG + chr3_1:68943138-68943157 None:intergenic 35.0%
GGGTGAAAATAGTAGAATTG+AGG + chr3_1:68943179-68943198 None:intergenic 35.0%
!! TTTTGAAGAAACCTAAGGCT+TGG - chr3_1:68943553-68943572 Msa0371050:intron 35.0%
TTTGAAGAAACCTAAGGCTT+GGG - chr3_1:68943554-68943573 Msa0371050:intron 35.0%
!! TATGCAAAATTAGGTGCTGA+TGG - chr3_1:68943600-68943619 Msa0371050:intron 35.0%
!! ATGCAAAATTAGGTGCTGAT+GGG - chr3_1:68943601-68943620 Msa0371050:intron 35.0%
TTGACTGAGATTAGACAAGT+TGG - chr3_1:68943651-68943670 Msa0371050:intron 35.0%
TTCTTCAAACCACCAACATT+TGG + chr3_1:68943681-68943700 None:intergenic 35.0%
TGGTTTGAAGAAGAAATCAG+TGG - chr3_1:68943689-68943708 Msa0371050:intron 35.0%
TCAGTGGCAGTAACTTATAA+AGG - chr3_1:68943705-68943724 Msa0371050:intron 35.0%
TATAAAGGTGATGATAAGCC+AGG - chr3_1:68943720-68943739 Msa0371050:intron 35.0%
ATAAAGGTGATGATAAGCCA+GGG - chr3_1:68943721-68943740 Msa0371050:intron 35.0%
CACATATGTTGGTATCATGT+CGG + chr3_1:68944049-68944068 None:intergenic 35.0%
ATTGATGTCAGTGTTGTATC+CGG - chr3_1:68944117-68944136 Msa0371050:CDS 35.0%
TTCATAGTCCAAATGAGTGT+TGG - chr3_1:68944155-68944174 Msa0371050:CDS 35.0%
TCATAGTCCAAATGAGTGTT+GGG - chr3_1:68944156-68944175 Msa0371050:CDS 35.0%
TACATAGGCTATGTTCTTTG+AGG - chr3_1:68944287-68944306 Msa0371050:CDS 35.0%
! GCGTAATTTGACTTAACATG+TGG - chr3_1:68944367-68944386 Msa0371050:intron 35.0%
TCTGCTTATGCAATTAAGGA+TGG - chr3_1:68944537-68944556 Msa0371050:CDS 35.0%
!!! AAAGCATTGAGCTTGGATTT+TGG - chr3_1:68944705-68944724 Msa0371050:intron 35.0%
! TTTTCAGACTGCAAAACAGT+TGG - chr3_1:68944836-68944855 Msa0371050:intron 35.0%
GATGTATTCAAACTCTCTCT+TGG - chr3_1:68944892-68944911 Msa0371050:intron 35.0%
! AGGATTTTTGCAAGCAAGAA+AGG - chr3_1:68944945-68944964 Msa0371050:intron 35.0%
! GGATTTTTGCAAGCAAGAAA+GGG - chr3_1:68944946-68944965 Msa0371050:intron 35.0%
! AATTAATGTCGGTTGATTGC+AGG - chr3_1:68945032-68945051 Msa0371050:intron 35.0%
CGTGACATTACTCTATTTGT+AGG - chr3_1:68945207-68945226 Msa0371050:intron 35.0%
GAAACAATTCTCCAACTTGT+AGG - chr3_1:68945232-68945251 Msa0371050:intron 35.0%
!! GTTTGTTTTTCTATGCAGGA+TGG - chr3_1:68945308-68945327 Msa0371050:intron 35.0%
!! TTATAGAGGTATTGTTGGTG+AGG + chr3_1:68945638-68945657 None:intergenic 35.0%
! TCTTACGGTTTAAGTGTTGT+TGG - chr3_1:68945667-68945686 Msa0371050:intron 35.0%
TTTCTAATGACGCAAAGTCA+AGG + chr3_1:68945861-68945880 None:intergenic 35.0%
!!! TTTTAATTTGATGGCAGGAC+CGG - chr3_1:68946055-68946074 Msa0371050:CDS 35.0%
ATGGAATTTCCGGGAAAATT+AGG - chr3_1:68946292-68946311 Msa0371050:intron 35.0%
!! TGATGCTTCTACTTTTGTCT+CGG + chr3_1:68946495-68946514 None:intergenic 35.0%
!! TCTGCCTTTGTTTCAGTTTT+CGG + chr3_1:68946548-68946567 None:intergenic 35.0%
TTACTTCACATACTTAGGCA+GGG + chr3_1:68946743-68946762 None:intergenic 35.0%
TTTACTTCACATACTTAGGC+AGG + chr3_1:68946744-68946763 None:intergenic 35.0%
TGCCTAAGTATGTGAAGTAA+AGG - chr3_1:68946743-68946762 Msa0371050:intron 35.0%
CTTCTGCCTAAGTATGTAAT+TGG + chr3_1:68946777-68946796 None:intergenic 35.0%
!! AGTCCCATTTTTGCAAGAAA+AGG - chr3_1:68946866-68946885 Msa0371050:CDS 35.0%
ATGAAATAGGAGACAATGTC+CGG - chr3_1:68946901-68946920 Msa0371050:CDS 35.0%
TACTGCAAGTCAAAAAAGAG+AGG + chr3_1:68947121-68947140 None:intergenic 35.0%
! AGATGAAGGAGGTTTGAAAT+CGG + chr3_1:68947146-68947165 None:intergenic 35.0%
TTCGTACAAGTGAAACTCTA+GGG + chr3_1:68947184-68947203 None:intergenic 35.0%
TACGAAGAGAATTCTATAGC+AGG - chr3_1:68947198-68947217 Msa0371050:CDS 35.0%
GTATGTTGAAGATGTTCTTC+TGG + chr3_1:68947294-68947313 None:intergenic 35.0%
TGATTGTGAACATTGTGTTG+TGG - chr3_1:68947414-68947433 Msa0371050:CDS 35.0%
!! GGTTTGGTGTGTAATGCAAT+GGG + chr3_1:68942944-68942963 None:intergenic 40.0%
!!! ATGTGTTGTTTTGGTGGGTT+TGG + chr3_1:68942960-68942979 None:intergenic 40.0%
ATGGGAGAAGATAGAAAGAG+AGG + chr3_1:68942998-68943017 None:intergenic 40.0%
TGTGGAATGAGTGGCAAAAT+GGG + chr3_1:68943016-68943035 None:intergenic 40.0%
TTGTGGAATGAGTGGCAAAA+TGG + chr3_1:68943017-68943036 None:intergenic 40.0%
TTTGTGAGGCTCTCAAAGTT+TGG + chr3_1:68943124-68943143 None:intergenic 40.0%
TGTCAGATAGCACAGAAAGA+GGG + chr3_1:68943200-68943219 None:intergenic 40.0%
GGTGGTGACATTGATGTTAA+TGG - chr3_1:68943435-68943454 Msa0371050:exon 40.0%
TTGAAGAAACCTAAGGCTTG+GGG - chr3_1:68943555-68943574 Msa0371050:intron 40.0%
GCTCAGTTGCTTGATATAAG+AGG - chr3_1:68943627-68943646 Msa0371050:intron 40.0%
! ACTGAGATTAGACAAGTTGG+TGG - chr3_1:68943654-68943673 Msa0371050:intron 40.0%
GAAAGCTTCTTCAAAAACCC+TGG + chr3_1:68943741-68943760 None:intergenic 40.0%
! CATAGTCCAAATGAGTGTTG+GGG - chr3_1:68944157-68944176 Msa0371050:CDS 40.0%
AAGTTTCCCCAACACTCATT+TGG + chr3_1:68944166-68944185 None:intergenic 40.0%
! AGTTTTACCAGTCACCACAT+AGG - chr3_1:68944263-68944282 Msa0371050:CDS 40.0%
! GTTTTACCAGTCACCACATA+GGG - chr3_1:68944264-68944283 Msa0371050:CDS 40.0%
CTGATTGAGTGAACTTGTGA+TGG - chr3_1:68944452-68944471 Msa0371050:intron 40.0%
TGATGGAAGCCAGATTTGAT+GGG - chr3_1:68944469-68944488 Msa0371050:intron 40.0%
TTCAGAGTTCCCATCAAATC+TGG + chr3_1:68944481-68944500 None:intergenic 40.0%
ATTTGATGGGAACTCTGAAC+TGG - chr3_1:68944482-68944501 Msa0371050:CDS 40.0%
GCAGAGTTAGTTACCCTTAA+CGG - chr3_1:68944507-68944526 Msa0371050:CDS 40.0%
ATAAATACCTGCCATCCTTG+TGG + chr3_1:68944573-68944592 None:intergenic 40.0%
TCTTGAACTCTGCAGAATAG+TGG - chr3_1:68944660-68944679 Msa0371050:intron 40.0%
!! ACCAAAGAAAGCATTGAGCT+TGG - chr3_1:68944698-68944717 Msa0371050:intron 40.0%
TCCAAGCTCAATGCTTTCTT+TGG + chr3_1:68944702-68944721 None:intergenic 40.0%
TGCAATCGGAGTATGTATCT+TGG - chr3_1:68944752-68944771 Msa0371050:intron 40.0%
!!! GTATTAGCCTTTTCTGAGGT+TGG - chr3_1:68945108-68945127 Msa0371050:intron 40.0%
! CAAGAAGCTTCTATTTGCTG+AGG - chr3_1:68945282-68945301 Msa0371050:intron 40.0%
ACAGAAAAATGGTGGCTTTC+TGG + chr3_1:68945384-68945403 None:intergenic 40.0%
! TACGGTTTAAGTGTTGTTGG+AGG - chr3_1:68945670-68945689 Msa0371050:intron 40.0%
! ACGGTTTAAGTGTTGTTGGA+GGG - chr3_1:68945671-68945690 Msa0371050:intron 40.0%
CATTGCATATGAGAGAGTAG+AGG + chr3_1:68945947-68945966 None:intergenic 40.0%
ATTTCATCAGCAAGCTCCTT+AGG + chr3_1:68946129-68946148 None:intergenic 40.0%
!! GGAGCTTGCTGATGAAATAA+AGG - chr3_1:68946131-68946150 Msa0371050:CDS 40.0%
GAGCAATGCATCACAATTGA+CGG - chr3_1:68946199-68946218 Msa0371050:intron 40.0%
TTCCGGGAAAATTAGGACAT+CGG - chr3_1:68946299-68946318 Msa0371050:intron 40.0%
! TTCCGATGTCCTAATTTTCC+CGG + chr3_1:68946304-68946323 None:intergenic 40.0%
GGAAAATTAGGACATCGGAA+AGG - chr3_1:68946304-68946323 Msa0371050:intron 40.0%
! GACTATTTTCTGTTGGTGCA+GGG + chr3_1:68946364-68946383 None:intergenic 40.0%
!!! AGCTCTGGACTATTTTCTGT+TGG + chr3_1:68946371-68946390 None:intergenic 40.0%
!! TGCTGCTTCTACTTTTGTCT+CGG + chr3_1:68946447-68946466 None:intergenic 40.0%
!! ATGCTTCTACTTTTGTCTCG+GGG + chr3_1:68946493-68946512 None:intergenic 40.0%
!! GATGCTTCTACTTTTGTCTC+GGG + chr3_1:68946494-68946513 None:intergenic 40.0%
ACAGAGTTTATTTCAGGAGC+AGG + chr3_1:68946524-68946543 None:intergenic 40.0%
TTCGGCACAGAGTTTATTTC+AGG + chr3_1:68946530-68946549 None:intergenic 40.0%
TGTGCCGAAAACTGAAACAA+AGG - chr3_1:68946541-68946560 Msa0371050:intron 40.0%
ACATATGGGTATGGTGAAAG+TGG + chr3_1:68946593-68946612 None:intergenic 40.0%
TCTATCAAATAGGGCTGGAA+AGG + chr3_1:68946707-68946726 None:intergenic 40.0%
GACGTGCCAATTACATACTT+AGG - chr3_1:68946768-68946787 Msa0371050:intron 40.0%
GCCAATGTCTATATTGTGTC+CGG - chr3_1:68947003-68947022 Msa0371050:CDS 40.0%
ACCGGACACAATATAGACAT+TGG + chr3_1:68947007-68947026 None:intergenic 40.0%
TGAAACACTTTCACAGACAC+CGG + chr3_1:68947025-68947044 None:intergenic 40.0%
! GATGAAGGAGGTTTGAAATC+GGG + chr3_1:68947145-68947164 None:intergenic 40.0%
TTTGAAGGAGATGGAGATGA+AGG + chr3_1:68947160-68947179 None:intergenic 40.0%
CTTCGTACAAGTGAAACTCT+AGG + chr3_1:68947185-68947204 None:intergenic 40.0%
CTGGCAGGATTATAGATTGT+AGG + chr3_1:68947275-68947294 None:intergenic 40.0%
GGTTTAGTGGCACAAATGTA+AGG + chr3_1:68947387-68947406 None:intergenic 40.0%
TTGTGAACATTGTGTTGTGG+AGG - chr3_1:68947417-68947436 Msa0371050:CDS 40.0%
!! GGGTTTGGTGTGTAATGCAA+TGG + chr3_1:68942945-68942964 None:intergenic 45.0%
GTCAGATAGCACAGAAAGAG+GGG + chr3_1:68943199-68943218 None:intergenic 45.0%
CTGTCAGATAGCACAGAAAG+AGG + chr3_1:68943201-68943220 None:intergenic 45.0%
GAGAACCCTGTAATTCTTGC+TGG - chr3_1:68943489-68943508 Msa0371050:intron 45.0%
AACCCTGTAATTCTTGCTGG+TGG - chr3_1:68943492-68943511 Msa0371050:intron 45.0%
CACCACCAGCAAGAATTACA+GGG + chr3_1:68943497-68943516 None:intergenic 45.0%
ACACCACCAGCAAGAATTAC+AGG + chr3_1:68943498-68943517 None:intergenic 45.0%
! TGCTGGTGGTGTAGCTATAT+TGG - chr3_1:68943506-68943525 Msa0371050:intron 45.0%
AGCTATATTGGCAGTGCCAT+TGG - chr3_1:68943518-68943537 Msa0371050:intron 45.0%
!! CAAGTTGGTGGACCAAATGT+TGG - chr3_1:68943666-68943685 Msa0371050:intron 45.0%
TGTCGGACACTAACACATGT+CGG + chr3_1:68944032-68944051 None:intergenic 45.0%
! TGAAGCACTAACACAGACAC+CGG + chr3_1:68944139-68944158 None:intergenic 45.0%
TATGTACCCTATGTGGTGAC+TGG + chr3_1:68944273-68944292 None:intergenic 45.0%
AGTCACCACATAGGGTACAT+AGG - chr3_1:68944272-68944291 Msa0371050:CDS 45.0%
CATAGCCTATGTACCCTATG+TGG + chr3_1:68944280-68944299 None:intergenic 45.0%
TACGCAGACTGCAGATGTAT+CGG + chr3_1:68944352-68944371 None:intergenic 45.0%
! GTGATGGAAGCCAGATTTGA+TGG - chr3_1:68944468-68944487 Msa0371050:intron 45.0%
GCAATTAAGGATGGTGCAGA+AGG - chr3_1:68944546-68944565 Msa0371050:intron 45.0%
TGCAGAATAGTGGTCTTCCT+TGG - chr3_1:68944670-68944689 Msa0371050:intron 45.0%
! GCTTTCTTTGGTTCAGTCCA+AGG + chr3_1:68944690-68944709 None:intergenic 45.0%
GCAAGCAAGAAAGGGAACAT+AGG - chr3_1:68944954-68944973 Msa0371050:intron 45.0%
GGTTGATTGCAGGAATCTGA+TGG - chr3_1:68945042-68945061 Msa0371050:intron 45.0%
ATTGCAGGAATCTGATGGCT+TGG - chr3_1:68945047-68945066 Msa0371050:intron 45.0%
TGCAGCAATCCCAAGAGTAA+CGG + chr3_1:68945073-68945092 None:intergenic 45.0%
ATTGCTGCAGCTACTGGATT+GGG - chr3_1:68945084-68945103 Msa0371050:intron 45.0%
!!! GGGTGTATTAGCCTTTTCTG+AGG - chr3_1:68945104-68945123 Msa0371050:intron 45.0%
CATTGGACCAACCTCAGAAA+AGG + chr3_1:68945118-68945137 None:intergenic 45.0%
TTGCAGCTGATCCTACAAGT+TGG + chr3_1:68945246-68945265 None:intergenic 45.0%
! CGGTTTAAGTGTTGTTGGAG+GGG - chr3_1:68945672-68945691 Msa0371050:intron 45.0%
! GTCTTATTGTTGGTGGAGGT+TGG + chr3_1:68946338-68946357 None:intergenic 45.0%
!! GAGAGTCTTATTGTTGGTGG+AGG + chr3_1:68946342-68946361 None:intergenic 45.0%
!! AGGGAGAGTCTTATTGTTGG+TGG + chr3_1:68946345-68946364 None:intergenic 45.0%
!! TGCAGGGAGAGTCTTATTGT+TGG + chr3_1:68946348-68946367 None:intergenic 45.0%
! GGACTATTTTCTGTTGGTGC+AGG + chr3_1:68946365-68946384 None:intergenic 45.0%
TTTGTCTCGGGGACAATTTC+AGG + chr3_1:68946434-68946453 None:intergenic 45.0%
!! CTGCTTCTACTTTTGTCTCG+GGG + chr3_1:68946445-68946464 None:intergenic 45.0%
!! GCTGCTTCTACTTTTGTCTC+GGG + chr3_1:68946446-68946465 None:intergenic 45.0%
TTTGTCTCGGGGACAATTTC+AGG + chr3_1:68946434-68946453 None:intergenic 45.0%
GGGTATGGTGAAAGTGGTTT+AGG + chr3_1:68946587-68946606 None:intergenic 45.0%
TTCACATACTTAGGCAGGGA+CGG + chr3_1:68946739-68946758 None:intergenic 45.0%
! CGTAACTACATGGGTTGTGT+CGG + chr3_1:68946941-68946960 None:intergenic 45.0%
AGAGAGGCAGAGTATGTGTT+AGG + chr3_1:68947105-68947124 None:intergenic 45.0%
!! GTGAAACTCTAGGGCTTTGA+AGG + chr3_1:68947175-68947194 None:intergenic 45.0%
GTTGAAGATGTTCTTCTGGC+AGG + chr3_1:68947290-68947309 None:intergenic 45.0%
!!! CTATTTATTATATATTATTT+TGG + chr3_1:68945788-68945807 None:intergenic 5.0%
!! ATTAAAAATTTAATGAAAAA+AGG + chr3_1:68946042-68946061 None:intergenic 5.0%
GGACAATCTCCTAGTGCTTC+TGG - chr3_1:68943411-68943430 Msa0371050:three_prime_UTR 50.0%
CAATCTCCTAGTGCTTCTGG+TGG - chr3_1:68943414-68943433 Msa0371050:three_prime_UTR 50.0%
GATTCAACACCCCAAGCCTT+AGG + chr3_1:68943567-68943586 None:intergenic 50.0%
! GTTGGTGGACCAAATGTTGG+TGG - chr3_1:68943669-68943688 Msa0371050:intron 50.0%
! ATGGCTTGGCCGTTACTCTT+GGG - chr3_1:68945061-68945080 Msa0371050:intron 50.0%
GATTGCTGCAGCTACTGGAT+TGG - chr3_1:68945083-68945102 Msa0371050:intron 50.0%
! GGTATTGTTGGTGAGGCAGA+TGG + chr3_1:68945631-68945650 None:intergenic 50.0%
GAACACCAAGGTTGCTCCTA+AGG - chr3_1:68946110-68946129 Msa0371050:CDS 50.0%
AAGCTCCTTAGGAGCAACCT+TGG + chr3_1:68946118-68946137 None:intergenic 50.0%
GAAAGTGGTTTAGGCTGCAC+AGG + chr3_1:68946578-68946597 None:intergenic 50.0%
AGACAATGTCCGGTGTCTGA+CGG - chr3_1:68946911-68946930 Msa0371050:CDS 50.0%
GAAGGAGATGGAGATGAAGG+AGG + chr3_1:68947157-68947176 None:intergenic 50.0%
!! CTCTAGGGCTTTGAAGGAGA+TGG + chr3_1:68947169-68947188 None:intergenic 50.0%
TCTCCTAGTGCTTCTGGTGG+TGG - chr3_1:68943417-68943436 Msa0371050:three_prime_UTR 55.0%
!! TCACCACCACCAGAAGCACT+AGG + chr3_1:68943423-68943442 None:intergenic 55.0%
GATGGTGCAGAAGGACCACA+AGG - chr3_1:68944555-68944574 Msa0371050:intron 55.0%
GTGCAGAAGGACCACAAGGA+TGG - chr3_1:68944559-68944578 Msa0371050:intron 55.0%
AGAAGGACCACAAGGATGGC+AGG - chr3_1:68944563-68944582 Msa0371050:intron 55.0%
! GATGGCTTGGCCGTTACTCT+TGG - chr3_1:68945060-68945079 Msa0371050:intron 55.0%
CTTGGGATTGCTGCAGCTAC+TGG - chr3_1:68945078-68945097 Msa0371050:intron 55.0%
!! AGTCCAGAGCTTGCTACAGC+TGG - chr3_1:68946380-68946399 Msa0371050:intron 55.0%
GTCGGTATACCGTCAGACAC+CGG + chr3_1:68946923-68946942 None:intergenic 55.0%
!! TGAGGCAGATGGTGCTGCAG+GGG + chr3_1:68945620-68945639 None:intergenic 60.0%
!! GTGAGGCAGATGGTGCTGCA+GGG + chr3_1:68945621-68945640 None:intergenic 60.0%
!! CCAGAGCTTGCTACAGCTGG+CGG - chr3_1:68946383-68946402 Msa0371050:intron 60.0%
!! GGTGAGGCAGATGGTGCTGC+AGG + chr3_1:68945622-68945641 None:intergenic 65.0%
CCGCCAGCTGTAGCAAGCTC+TGG + chr3_1:68946386-68946405 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 68942931 68947702 68942931 ID=Msa0371050;Name=Msa0371050
chr3_1 mRNA 68942931 68947702 68942931 ID=Msa0371050-mRNA-1;Parent=Msa0371050;Name=Msa0371050-mRNA-1;_AED=0.05;_eAED=0.05;_QI=237|1|0.87|1|1|1|8|516|467
chr3_1 exon 68942931 68943494 68942931 ID=Msa0371050-mRNA-1:exon:14631;Parent=Msa0371050-mRNA-1
chr3_1 exon 68944023 68944319 68944023 ID=Msa0371050-mRNA-1:exon:14630;Parent=Msa0371050-mRNA-1
chr3_1 exon 68944481 68944561 68944481 ID=Msa0371050-mRNA-1:exon:14629;Parent=Msa0371050-mRNA-1
chr3_1 exon 68945330 68945404 68945330 ID=Msa0371050-mRNA-1:exon:14628;Parent=Msa0371050-mRNA-1
chr3_1 exon 68945508 68945579 68945508 ID=Msa0371050-mRNA-1:exon:14627;Parent=Msa0371050-mRNA-1
chr3_1 exon 68945872 68945958 68945872 ID=Msa0371050-mRNA-1:exon:14626;Parent=Msa0371050-mRNA-1
chr3_1 exon 68946049 68946151 68946049 ID=Msa0371050-mRNA-1:exon:14625;Parent=Msa0371050-mRNA-1
chr3_1 exon 68946825 68947702 68946825 ID=Msa0371050-mRNA-1:exon:14624;Parent=Msa0371050-mRNA-1
chr3_1 five_prime_UTR 68947466 68947702 68947466 ID=Msa0371050-mRNA-1:five_prime_utr;Parent=Msa0371050-mRNA-1
chr3_1 CDS 68946825 68947465 68946825 ID=Msa0371050-mRNA-1:cds;Parent=Msa0371050-mRNA-1
chr3_1 CDS 68946049 68946151 68946049 ID=Msa0371050-mRNA-1:cds;Parent=Msa0371050-mRNA-1
chr3_1 CDS 68945872 68945958 68945872 ID=Msa0371050-mRNA-1:cds;Parent=Msa0371050-mRNA-1
chr3_1 CDS 68945508 68945579 68945508 ID=Msa0371050-mRNA-1:cds;Parent=Msa0371050-mRNA-1
chr3_1 CDS 68945330 68945404 68945330 ID=Msa0371050-mRNA-1:cds;Parent=Msa0371050-mRNA-1
chr3_1 CDS 68944481 68944561 68944481 ID=Msa0371050-mRNA-1:cds;Parent=Msa0371050-mRNA-1
chr3_1 CDS 68944023 68944319 68944023 ID=Msa0371050-mRNA-1:cds;Parent=Msa0371050-mRNA-1
chr3_1 CDS 68943447 68943494 68943447 ID=Msa0371050-mRNA-1:cds;Parent=Msa0371050-mRNA-1
chr3_1 three_prime_UTR 68942931 68943446 68942931 ID=Msa0371050-mRNA-1:three_prime_utr;Parent=Msa0371050-mRNA-1
Gene Sequence

>Msa0371050

ATGGAGGCCCTCAATTCTACTATTTTCACCCCTCTTTCTGTGCTATCTGACAGAACAAAACACAAACACCCCACAAAATTTTCATGCAAAGCTTCAAACTTTTCAACTTCAATCAACAAAAAACAGAACTTAAGAGAGTTTTTATCAAAGAATTTTCAAAAGGGTCTTTTTCTTGCAGCAGCTTCAGTTGTGAATGTTAACAATGGTGAATTTGCCAATGCTTTAACATATGAAGAAGCATTAGGACAATCTCCTAGTGCTTCTGGTGGTGGTGACATTGATGTTAATGGTTTTGTAGATAGTGTTATAGGCTTTGCAACTGAGAACCCTGTAATTCTTGCTGGTGGTGTAGCTATATTGGCAGTGCCATTGGTTTTGTCTCAGATTTTGAAGAAACCTAAGGCTTGGGGTGTTGAATCTGCTAAAAATGCTTATGCAAAATTAGGTGCTGATGGGAATGCTCAGTTGCTTGATATAAGAGGTTTGACTGAGATTAGACAAGTTGGTGGACCAAATGTTGGTGGTTTGAAGAAGAAATCAGTGGCAGTAACTTATAAAGGTGATGATAAGCCAGGGTTTTTGAAGAAGCTTTCTTTGAAGTTTAAGGAGCCTGAGAATACTACATTGTTCATTCTTGACAAATTTGATGGGAACTCTGAACTGGTTGCAGAGTTAGTTACCCTTAACGGATTTAAATCTGCTTATGCAATTAAGGATGGTGCAGAAGGACCACAAGGATGGCAGAATAGTGGTCTTCCTTGGACTGAACCAAAGAAAGCATTGAGCTTGGATTTTGGCAGTTTGACAGATACTATCAATGATGCAATCGGAGAATCTGATGGCTTGGCCGTTACTCTTGGGATTGCTGCAGCTACTGGATTGGGTGTATTAGCCTTTTCTGAGGTAGAAACAATTCTCCAACTTGTAGGATCAGCTGCAATTGTTCAGTTTGCAAGCAAGAAGCTTCTATTTGCTGAGGACCGGAAGAAAACACTAAAACAAGTTAATGAGTTTTTGAACACCAAGGTTGCTCCTAAGGAGCTTGCTGATGAAATAAAGGACATCGGAAAGGCTCTTCTACCAACCTCCACCAACAATAAGACTCTCCCTGCACCAACAGAAAATAGTCCAGAGCTTGCTACAGCTGGCGGAACTGTATTGAACGCAGAAGCTACTCCTGAAATTGTCCCCGAGACAAAAGTAGAAGCAGCAGCAGAAGCTACTCCTGAAATTGTCCCCGAGACAAAAGTAGAAGCATCAGCAGAACCTGCTCCTGAAATAAACTCTGTGCCGAAAACTGAAACAAAGGCAGAGTCAATTCCTGTGCAGCCTAAACCACTTTCACCATACCCATATTATCCCGATTTCAAACCTCCTTCATCTCCATCTCCTTCAAAGCCCTAG

Protein sequence

>Msa0371050

MEALNSTIFTPLSVLSDRTKHKHPTKFSCKASNFSTSINKKQNLREFLSKNFQKGLFLAAASVVNVNNGEFANALTYEEALGQSPSASGGGDIDVNGFVDSVIGFATENPVILAGGVAILAVPLVLSQILKKPKAWGVESAKNAYAKLGADGNAQLLDIRGLTEIRQVGGPNVGGLKKKSVAVTYKGDDKPGFLKKLSLKFKEPENTTLFILDKFDGNSELVAELVTLNGFKSAYAIKDGAEGPQGWQNSGLPWTEPKKALSLDFGSLTDTINDAIGESDGLAVTLGIAAATGLGVLAFSEVETILQLVGSAAIVQFASKKLLFAEDRKKTLKQVNEFLNTKVAPKELADEIKDIGKALLPTSTNNKTLPAPTENSPELATAGGTVLNAEATPEIVPETKVEAAAEATPEIVPETKVEASAEPAPEINSVPKTETKAESIPVQPKPLSPYPYYPDFKPPSSPSPSKP*