AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0380360


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0380360 MtrunA17_Chr3g0145851 97.794 272 4 1 1 270 1 272 0.0 531
Msa0380360 MtrunA17_Chr6g0450631 42.718 206 114 4 56 260 49 251 9.05e-47 158
Msa0380360 MtrunA17_Chr1g0198561 40.777 206 118 4 56 260 49 251 2.77e-43 149
Msa0380360 MtrunA17_Chr2g0324401 49.091 55 28 0 206 260 9 63 8.51e-11 57.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0380360 AT2G43030.1 72.222 270 72 1 1 270 5 271 2.85e-131 373
Msa0380360 AT3G17465.1 37.209 215 132 3 56 269 78 290 2.78e-38 137

Find 90 sgRNAs with CRISPR-Local

Find 217 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTAACAATCTTAAGCTTTC+TGG 0.097361 3_1:-82032078 None:intergenic
AAAGAGACTAATTAATTCTT+TGG 0.209215 3_1:-82032203 None:intergenic
AAAGCTCATCATTCCCAATT+TGG 0.228676 3_1:-82031488 None:intergenic
CAAATTGACCAAACCTGAAA+TGG 0.282604 3_1:+82031645 Msa0380360:CDS
CATTCCTATGCGCCATCTTC+AGG 0.308173 3_1:+82031690 Msa0380360:CDS
TTTACAATAAATCATGTCTT+AGG 0.320590 3_1:+82032369 Msa0380360:three_prime_UTR
GAAGGTATTGAAATGGAAAA+TGG 0.337920 3_1:-82031328 None:intergenic
ATGATCAAAGGTGCTCTTCC+TGG 0.365904 3_1:+82032125 Msa0380360:CDS
TTTCGTCTTCAATCCGTTGA+TGG 0.384156 3_1:+82031715 Msa0380360:CDS
CATTTCTCAGTAGCTGAGAT+TGG 0.387976 3_1:+82032329 Msa0380360:three_prime_UTR
TTTGACAATGAAGGGCTAAC+AGG 0.397586 3_1:-82032258 None:intergenic
TCAAATACAAGGCGCTGATT+AGG 0.398930 3_1:-82031745 None:intergenic
AAGATGACCCATTTCAGGTT+TGG 0.399688 3_1:-82031653 None:intergenic
CTCTTGGAACCATGGCTCAT+TGG 0.403785 3_1:-82031957 None:intergenic
TGGTGTGATGGGTACCAAAT+TGG 0.414953 3_1:+82031474 Msa0380360:CDS
GTTGTTCCCGTCACTGTTGT+CGG 0.415769 3_1:+82031529 Msa0380360:CDS
GGTGATCTTGTTGATGTCTC+TGG 0.428399 3_1:+82031784 Msa0380360:CDS
ATTAGAAGAAGGTATTGAAA+TGG 0.434138 3_1:-82031335 None:intergenic
AAGCTTTCTGGTCTTCCTGT+TGG 0.434373 3_1:-82032066 None:intergenic
ACGCCGTCCAAGTTGGTTAC+CGG 0.438083 3_1:+82031608 Msa0380360:CDS
TCCAAGTTGTCTGTGACTCT+TGG 0.442433 3_1:-82031973 None:intergenic
TCCAAGAGTCACAGACAACT+TGG 0.460086 3_1:+82031972 Msa0380360:CDS
TTCTTGCCAACAATCTTAGC+GGG 0.460342 3_1:-82032176 None:intergenic
GAGTTACAGACAAGTAGTTA+AGG 0.460373 3_1:-82032226 None:intergenic
ACTGTTGTCGGTTTCAAAGA+AGG 0.461503 3_1:+82031541 Msa0380360:CDS
AGAGGCTGGTGTTGGTGTGA+TGG 0.463975 3_1:+82031462 Msa0380360:CDS
TACACCTGGTCGCGTATACA+AGG 0.469173 3_1:+82032013 Msa0380360:CDS
TTTCAGGTTTGGTCAATTTG+CGG 0.469193 3_1:-82031642 None:intergenic
GTTGTAACCGTCGGTGGCGT+CGG 0.473671 3_1:-82031587 None:intergenic
AAAGAAGATGCCTGGTAGGA+TGG 0.474224 3_1:+82032037 Msa0380360:CDS
ATACATAAATTTGACAATGA+AGG 0.474290 3_1:-82032267 None:intergenic
GAGGCTGGTGTTGGTGTGAT+GGG 0.474712 3_1:+82031463 Msa0380360:CDS
TAACCCTCCGGTAACCAACT+TGG 0.478957 3_1:-82031615 None:intergenic
CACAGACAACTTGGATCCAT+TGG 0.481197 3_1:+82031981 Msa0380360:CDS
GTAGGATGGGTGGAACCAAC+AGG 0.493432 3_1:+82032051 Msa0380360:CDS
GAAGAAGAAGAATTAGAAGA+AGG 0.493725 3_1:-82031346 None:intergenic
TACGCGACCAGGTGTAGTTC+CGG 0.494636 3_1:-82032006 None:intergenic
TTTCCCTTGTATACGCGACC+AGG 0.499382 3_1:-82032017 None:intergenic
AGAAGATTACCAGGCTTACC+AGG 0.500896 3_1:-82032143 None:intergenic
TGAAATGGGTCATCTTGAAA+AGG 0.503372 3_1:+82031660 Msa0380360:CDS
ACGGGAACAACTTCACCGTT+AGG 0.508452 3_1:-82031517 None:intergenic
AAGAAGATGCCTGGTAGGAT+GGG 0.509948 3_1:+82032038 Msa0380360:CDS
TATACTATTCTTAATTCCTA+AGG 0.511742 3_1:+82032287 Msa0380360:three_prime_UTR
GGTGTGATGGGTACCAAATT+GGG 0.512034 3_1:+82031475 Msa0380360:CDS
AAATTGACCAAACCTGAAAT+GGG 0.513032 3_1:+82031646 Msa0380360:CDS
TTGAAACCGACAACAGTGAC+GGG 0.513527 3_1:-82031535 None:intergenic
GGTGCTCTTCCTGGTAAGCC+TGG 0.514459 3_1:+82032134 Msa0380360:CDS
AAGCGTCATAACTTCAAAAG+AGG 0.517261 3_1:+82031933 Msa0380360:CDS
AGGTGTAGTTCCGGCACCAA+TGG 0.518535 3_1:-82031997 None:intergenic
TACATAAATTTGACAATGAA+GGG 0.518660 3_1:-82032266 None:intergenic
TTGGTTCCACCCATCCTACC+AGG 0.519178 3_1:-82032047 None:intergenic
ATGGGTCATCTTGAAAAGGT+TGG 0.519826 3_1:+82031664 Msa0380360:CDS
GATGTCTCTGGCACCACCAT+CGG 0.522268 3_1:+82031796 Msa0380360:CDS
GGTGGTGAAAATGAGCTTAG+AGG 0.522460 3_1:+82031444 Msa0380360:CDS
CTGAAGATGGCGCATAGGAA+TGG 0.527595 3_1:-82031689 None:intergenic
GTAAGCCTGGTAATCTTCTA+CGG 0.530779 3_1:+82032147 Msa0380360:CDS
GAACAACTTCACCGTTAGGT+TGG 0.533148 3_1:-82031513 None:intergenic
CTCTGGCACCACCATCGGCA+AGG 0.534330 3_1:+82031801 Msa0380360:CDS
TACAAGGGAAAGAAGATGCC+TGG 0.536322 3_1:+82032029 Msa0380360:CDS
GTCTGTGACTCTTGGAACCA+TGG 0.543733 3_1:-82031965 None:intergenic
CAACTTGGATCCATTGGTGC+CGG 0.569215 3_1:+82031987 Msa0380360:CDS
ATTTGCGGTCTCTAACCCTC+CGG 0.569415 3_1:-82031627 None:intergenic
ATTAGGTTCAAAACCATCAA+CGG 0.570807 3_1:-82031728 None:intergenic
GAAGACGAAACTCCTGAAGA+TGG 0.571739 3_1:-82031702 None:intergenic
TCTGGCACCACCATCGGCAA+GGG 0.572275 3_1:+82031802 Msa0380360:CDS
CTTAATGTTATCATGATCAA+AGG 0.572918 3_1:+82032113 Msa0380360:CDS
ATTGGTGCCGGAACTACACC+TGG 0.580799 3_1:+82031999 Msa0380360:CDS
TTTGAAACCGACAACAGTGA+CGG 0.586413 3_1:-82031536 None:intergenic
CCGTCCAAGTTGGTTACCGG+AGG 0.591201 3_1:+82031611 Msa0380360:CDS
GTTCTTGCCAACAATCTTAG+CGG 0.594511 3_1:-82032177 None:intergenic
AAGATGCCTGGTAGGATGGG+TGG 0.594546 3_1:+82032041 Msa0380360:CDS
ACCTTGAAAACCCTTGCCGA+TGG 0.600155 3_1:-82031812 None:intergenic
TGAAAAGCTCATCAAATACA+AGG 0.600821 3_1:-82031756 None:intergenic
GCTATCCGTAGAAGATTACC+AGG 0.602366 3_1:-82032152 None:intergenic
AGGGAAAGAAGATGCCTGGT+AGG 0.605040 3_1:+82032033 Msa0380360:CDS
TTGAAAACCCTTGCCGATGG+TGG 0.607518 3_1:-82031809 None:intergenic
ATCAAAACCGACGCCACCGA+CGG 0.609949 3_1:+82031580 Msa0380360:CDS
GGTTACAACGCCGTCCAAGT+TGG 0.618166 3_1:+82031601 Msa0380360:CDS
TATTGAAATGGAAAATGGTG+AGG 0.627513 3_1:-82031323 None:intergenic
AACTCCTGAAGATGGCGCAT+AGG 0.631101 3_1:-82031694 None:intergenic
GTGAAAATGAGCTTAGAGGC+TGG 0.634928 3_1:+82031448 Msa0380360:CDS
TCTTGCCAACAATCTTAGCG+GGG 0.638407 3_1:-82032175 None:intergenic
CCTCCGGTAACCAACTTGGA+CGG 0.639997 3_1:-82031611 None:intergenic
ATGAGCTTAGAGGCTGGTGT+TGG 0.640133 3_1:+82031454 Msa0380360:CDS
AAAAGAGGACCAATGAGCCA+TGG 0.640937 3_1:+82031948 Msa0380360:CDS
CGTCCAAGTTGGTTACCGGA+GGG 0.643249 3_1:+82031612 Msa0380360:CDS
CTTGCCAACAATCTTAGCGG+GGG 0.643846 3_1:-82032174 None:intergenic
GACGGCGTTGTAACCGTCGG+TGG 0.648118 3_1:-82031593 None:intergenic
TTGGACGGCGTTGTAACCGT+CGG 0.663802 3_1:-82031596 None:intergenic
ACACCTGGTCGCGTATACAA+GGG 0.687415 3_1:+82032014 Msa0380360:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATAATATCTTTCACTAA+TGG + chr3_1:82031880-82031899 Msa0380360:intron 15.0%
!! ATAATAATATCTTTCACTAA+TGG + chr3_1:82031880-82031899 Msa0380360:intron 15.0%
!! AAAGAGACTAATTAATTCTT+TGG - chr3_1:82032206-82032225 None:intergenic 20.0%
!! TACATAAATTTGACAATGAA+GGG - chr3_1:82032269-82032288 None:intergenic 20.0%
!! ATACATAAATTTGACAATGA+AGG - chr3_1:82032270-82032289 None:intergenic 20.0%
!! TATACTATTCTTAATTCCTA+AGG + chr3_1:82032287-82032306 Msa0380360:three_prime_UTR 20.0%
!! TTTACAATAAATCATGTCTT+AGG + chr3_1:82032369-82032388 Msa0380360:three_prime_UTR 20.0%
!! AAAGAGACTAATTAATTCTT+TGG - chr3_1:82032206-82032225 None:intergenic 20.0%
!! TACATAAATTTGACAATGAA+GGG - chr3_1:82032269-82032288 None:intergenic 20.0%
!! ATACATAAATTTGACAATGA+AGG - chr3_1:82032270-82032289 None:intergenic 20.0%
!! TATACTATTCTTAATTCCTA+AGG + chr3_1:82032287-82032306 Msa0380360:three_prime_UTR 20.0%
!! TTTACAATAAATCATGTCTT+AGG + chr3_1:82032369-82032388 Msa0380360:three_prime_UTR 20.0%
!!! ATTAGAAGAAGGTATTGAAA+TGG - chr3_1:82031338-82031357 None:intergenic 25.0%
! AGTAGAAAAAGAAGTTGAAA+AGG - chr3_1:82031377-82031396 None:intergenic 25.0%
! TTTAACAATCTTAAGCTTTC+TGG - chr3_1:82032081-82032100 None:intergenic 25.0%
! CTTAATGTTATCATGATCAA+AGG + chr3_1:82032113-82032132 Msa0380360:CDS 25.0%
!!! ATTAGAAGAAGGTATTGAAA+TGG - chr3_1:82031338-82031357 None:intergenic 25.0%
! AGTAGAAAAAGAAGTTGAAA+AGG - chr3_1:82031377-82031396 None:intergenic 25.0%
! TTTAACAATCTTAAGCTTTC+TGG - chr3_1:82032081-82032100 None:intergenic 25.0%
! CTTAATGTTATCATGATCAA+AGG + chr3_1:82032113-82032132 Msa0380360:CDS 25.0%
TATTGAAATGGAAAATGGTG+AGG - chr3_1:82031326-82031345 None:intergenic 30.0%
!! GAAGGTATTGAAATGGAAAA+TGG - chr3_1:82031331-82031350 None:intergenic 30.0%
GAAGAAGAAGAATTAGAAGA+AGG - chr3_1:82031349-82031368 None:intergenic 30.0%
AAATTGACCAAACCTGAAAT+GGG + chr3_1:82031646-82031665 Msa0380360:CDS 30.0%
ATTAGGTTCAAAACCATCAA+CGG - chr3_1:82031731-82031750 None:intergenic 30.0%
TGAAAAGCTCATCAAATACA+AGG - chr3_1:82031759-82031778 None:intergenic 30.0%
! TTTGATGAGCTTTTCAATGA+AGG + chr3_1:82031763-82031782 Msa0380360:CDS 30.0%
TATCAACTCAACAACTAGAA+GGG - chr3_1:82031863-82031882 None:intergenic 30.0%
TTATCAACTCAACAACTAGA+AGG - chr3_1:82031864-82031883 None:intergenic 30.0%
ATGAACTTACTTACTTTGAC+AGG + chr3_1:82031903-82031922 Msa0380360:intron 30.0%
!!! TGATTGTTATTTTCGTCCTT+AGG - chr3_1:82032306-82032325 None:intergenic 30.0%
TATTGAAATGGAAAATGGTG+AGG - chr3_1:82031326-82031345 None:intergenic 30.0%
!! GAAGGTATTGAAATGGAAAA+TGG - chr3_1:82031331-82031350 None:intergenic 30.0%
GAAGAAGAAGAATTAGAAGA+AGG - chr3_1:82031349-82031368 None:intergenic 30.0%
AAATTGACCAAACCTGAAAT+GGG + chr3_1:82031646-82031665 Msa0380360:CDS 30.0%
ATTAGGTTCAAAACCATCAA+CGG - chr3_1:82031731-82031750 None:intergenic 30.0%
TGAAAAGCTCATCAAATACA+AGG - chr3_1:82031759-82031778 None:intergenic 30.0%
! TTTGATGAGCTTTTCAATGA+AGG + chr3_1:82031763-82031782 Msa0380360:CDS 30.0%
TATCAACTCAACAACTAGAA+GGG - chr3_1:82031863-82031882 None:intergenic 30.0%
TTATCAACTCAACAACTAGA+AGG - chr3_1:82031864-82031883 None:intergenic 30.0%
ATGAACTTACTTACTTTGAC+AGG + chr3_1:82031903-82031922 Msa0380360:intron 30.0%
!!! TGATTGTTATTTTCGTCCTT+AGG - chr3_1:82032306-82032325 None:intergenic 30.0%
AAAGCTCATCATTCCCAATT+TGG - chr3_1:82031491-82031510 None:intergenic 35.0%
!! ATGAGCTTTTTCCAACCTAA+CGG + chr3_1:82031502-82031521 Msa0380360:CDS 35.0%
!! TTTCAGGTTTGGTCAATTTG+CGG - chr3_1:82031645-82031664 None:intergenic 35.0%
CAAATTGACCAAACCTGAAA+TGG + chr3_1:82031645-82031664 Msa0380360:CDS 35.0%
!! TTTTCAAGATGACCCATTTC+AGG - chr3_1:82031661-82031680 None:intergenic 35.0%
TGAAATGGGTCATCTTGAAA+AGG + chr3_1:82031660-82031679 Msa0380360:CDS 35.0%
AACTTACTTACTTTGACAGG+TGG + chr3_1:82031906-82031925 Msa0380360:intron 35.0%
AAGCGTCATAACTTCAAAAG+AGG + chr3_1:82031933-82031952 Msa0380360:CDS 35.0%
GAGTTACAGACAAGTAGTTA+AGG - chr3_1:82032229-82032248 None:intergenic 35.0%
AAAGCTCATCATTCCCAATT+TGG - chr3_1:82031491-82031510 None:intergenic 35.0%
!! ATGAGCTTTTTCCAACCTAA+CGG + chr3_1:82031502-82031521 Msa0380360:CDS 35.0%
!! TTTCAGGTTTGGTCAATTTG+CGG - chr3_1:82031645-82031664 None:intergenic 35.0%
CAAATTGACCAAACCTGAAA+TGG + chr3_1:82031645-82031664 Msa0380360:CDS 35.0%
!! TTTTCAAGATGACCCATTTC+AGG - chr3_1:82031661-82031680 None:intergenic 35.0%
TGAAATGGGTCATCTTGAAA+AGG + chr3_1:82031660-82031679 Msa0380360:CDS 35.0%
AACTTACTTACTTTGACAGG+TGG + chr3_1:82031906-82031925 Msa0380360:intron 35.0%
AAGCGTCATAACTTCAAAAG+AGG + chr3_1:82031933-82031952 Msa0380360:CDS 35.0%
GAGTTACAGACAAGTAGTTA+AGG - chr3_1:82032229-82032248 None:intergenic 35.0%
! TTTGAAACCGACAACAGTGA+CGG - chr3_1:82031539-82031558 None:intergenic 40.0%
!! ACTGTTGTCGGTTTCAAAGA+AGG + chr3_1:82031541-82031560 Msa0380360:CDS 40.0%
!! AAGATGACCCATTTCAGGTT+TGG - chr3_1:82031656-82031675 None:intergenic 40.0%
ATGGGTCATCTTGAAAAGGT+TGG + chr3_1:82031664-82031683 Msa0380360:CDS 40.0%
TTTCGTCTTCAATCCGTTGA+TGG + chr3_1:82031715-82031734 Msa0380360:CDS 40.0%
!! TCAAATACAAGGCGCTGATT+AGG - chr3_1:82031748-82031767 None:intergenic 40.0%
ACTAGAAGGGAATGCAAAGA+GGG - chr3_1:82031850-82031869 None:intergenic 40.0%
AACTAGAAGGGAATGCAAAG+AGG - chr3_1:82031851-82031870 None:intergenic 40.0%
GTAAGCCTGGTAATCTTCTA+CGG + chr3_1:82032147-82032166 Msa0380360:CDS 40.0%
TTCTTGCCAACAATCTTAGC+GGG - chr3_1:82032179-82032198 None:intergenic 40.0%
GTTCTTGCCAACAATCTTAG+CGG - chr3_1:82032180-82032199 None:intergenic 40.0%
TTTGACAATGAAGGGCTAAC+AGG - chr3_1:82032261-82032280 None:intergenic 40.0%
CATTTCTCAGTAGCTGAGAT+TGG + chr3_1:82032329-82032348 Msa0380360:three_prime_UTR 40.0%
GAATGAAACACAACACCAAC+TGG - chr3_1:82031243-82031262 None:intergenic 40.0%
! TTTGAAACCGACAACAGTGA+CGG - chr3_1:82031539-82031558 None:intergenic 40.0%
!! ACTGTTGTCGGTTTCAAAGA+AGG + chr3_1:82031541-82031560 Msa0380360:CDS 40.0%
!! AAGATGACCCATTTCAGGTT+TGG - chr3_1:82031656-82031675 None:intergenic 40.0%
ATGGGTCATCTTGAAAAGGT+TGG + chr3_1:82031664-82031683 Msa0380360:CDS 40.0%
TTTCGTCTTCAATCCGTTGA+TGG + chr3_1:82031715-82031734 Msa0380360:CDS 40.0%
!! TCAAATACAAGGCGCTGATT+AGG - chr3_1:82031748-82031767 None:intergenic 40.0%
ACTAGAAGGGAATGCAAAGA+GGG - chr3_1:82031850-82031869 None:intergenic 40.0%
AACTAGAAGGGAATGCAAAG+AGG - chr3_1:82031851-82031870 None:intergenic 40.0%
GTAAGCCTGGTAATCTTCTA+CGG + chr3_1:82032147-82032166 Msa0380360:CDS 40.0%
TTCTTGCCAACAATCTTAGC+GGG - chr3_1:82032179-82032198 None:intergenic 40.0%
GTTCTTGCCAACAATCTTAG+CGG - chr3_1:82032180-82032199 None:intergenic 40.0%
TTTGACAATGAAGGGCTAAC+AGG - chr3_1:82032261-82032280 None:intergenic 40.0%
CATTTCTCAGTAGCTGAGAT+TGG + chr3_1:82032329-82032348 Msa0380360:three_prime_UTR 40.0%
CAGCAGCAGCAAAGAAAAAG+AGG + chr3_1:82031412-82031431 Msa0380360:CDS 45.0%
CAGCAGCAAAGAAAAAGAGG+AGG + chr3_1:82031415-82031434 Msa0380360:CDS 45.0%
AAGAAAAAGAGGAGGAGCGA+TGG + chr3_1:82031423-82031442 Msa0380360:CDS 45.0%
GGTGGTGAAAATGAGCTTAG+AGG + chr3_1:82031444-82031463 Msa0380360:CDS 45.0%
GTGAAAATGAGCTTAGAGGC+TGG + chr3_1:82031448-82031467 Msa0380360:CDS 45.0%
!! TGGTGTGATGGGTACCAAAT+TGG + chr3_1:82031474-82031493 Msa0380360:CDS 45.0%
!! GGTGTGATGGGTACCAAATT+GGG + chr3_1:82031475-82031494 Msa0380360:CDS 45.0%
GAACAACTTCACCGTTAGGT+TGG - chr3_1:82031516-82031535 None:intergenic 45.0%
TTGAAACCGACAACAGTGAC+GGG - chr3_1:82031538-82031557 None:intergenic 45.0%
GAAGACGAAACTCCTGAAGA+TGG - chr3_1:82031705-82031724 None:intergenic 45.0%
GGTGATCTTGTTGATGTCTC+TGG + chr3_1:82031784-82031803 Msa0380360:CDS 45.0%
AAAAGAGGACCAATGAGCCA+TGG + chr3_1:82031948-82031967 Msa0380360:CDS 45.0%
TCCAAGAGTCACAGACAACT+TGG + chr3_1:82031972-82031991 Msa0380360:CDS 45.0%
TCCAAGTTGTCTGTGACTCT+TGG - chr3_1:82031976-82031995 None:intergenic 45.0%
CACAGACAACTTGGATCCAT+TGG + chr3_1:82031981-82032000 Msa0380360:CDS 45.0%
TACAAGGGAAAGAAGATGCC+TGG + chr3_1:82032029-82032048 Msa0380360:CDS 45.0%
AAAGAAGATGCCTGGTAGGA+TGG + chr3_1:82032037-82032056 Msa0380360:CDS 45.0%
AAGAAGATGCCTGGTAGGAT+GGG + chr3_1:82032038-82032057 Msa0380360:CDS 45.0%
! AAGCTTTCTGGTCTTCCTGT+TGG - chr3_1:82032069-82032088 None:intergenic 45.0%
!! ATGATCAAAGGTGCTCTTCC+TGG + chr3_1:82032125-82032144 Msa0380360:CDS 45.0%
AGAAGATTACCAGGCTTACC+AGG - chr3_1:82032146-82032165 None:intergenic 45.0%
GCTATCCGTAGAAGATTACC+AGG - chr3_1:82032155-82032174 None:intergenic 45.0%
TCTTGCCAACAATCTTAGCG+GGG - chr3_1:82032178-82032197 None:intergenic 45.0%
CAGCAGCAGCAAAGAAAAAG+AGG + chr3_1:82031412-82031431 Msa0380360:CDS 45.0%
CAGCAGCAAAGAAAAAGAGG+AGG + chr3_1:82031415-82031434 Msa0380360:CDS 45.0%
AAGAAAAAGAGGAGGAGCGA+TGG + chr3_1:82031423-82031442 Msa0380360:CDS 45.0%
GGTGGTGAAAATGAGCTTAG+AGG + chr3_1:82031444-82031463 Msa0380360:CDS 45.0%
GTGAAAATGAGCTTAGAGGC+TGG + chr3_1:82031448-82031467 Msa0380360:CDS 45.0%
!! TGGTGTGATGGGTACCAAAT+TGG + chr3_1:82031474-82031493 Msa0380360:CDS 45.0%
!! GGTGTGATGGGTACCAAATT+GGG + chr3_1:82031475-82031494 Msa0380360:CDS 45.0%
GAACAACTTCACCGTTAGGT+TGG - chr3_1:82031516-82031535 None:intergenic 45.0%
TTGAAACCGACAACAGTGAC+GGG - chr3_1:82031538-82031557 None:intergenic 45.0%
GAAGACGAAACTCCTGAAGA+TGG - chr3_1:82031705-82031724 None:intergenic 45.0%
GGTGATCTTGTTGATGTCTC+TGG + chr3_1:82031784-82031803 Msa0380360:CDS 45.0%
AAAAGAGGACCAATGAGCCA+TGG + chr3_1:82031948-82031967 Msa0380360:CDS 45.0%
TCCAAGAGTCACAGACAACT+TGG + chr3_1:82031972-82031991 Msa0380360:CDS 45.0%
TCCAAGTTGTCTGTGACTCT+TGG - chr3_1:82031976-82031995 None:intergenic 45.0%
CACAGACAACTTGGATCCAT+TGG + chr3_1:82031981-82032000 Msa0380360:CDS 45.0%
TACAAGGGAAAGAAGATGCC+TGG + chr3_1:82032029-82032048 Msa0380360:CDS 45.0%
AAAGAAGATGCCTGGTAGGA+TGG + chr3_1:82032037-82032056 Msa0380360:CDS 45.0%
AAGAAGATGCCTGGTAGGAT+GGG + chr3_1:82032038-82032057 Msa0380360:CDS 45.0%
! AAGCTTTCTGGTCTTCCTGT+TGG - chr3_1:82032069-82032088 None:intergenic 45.0%
!! ATGATCAAAGGTGCTCTTCC+TGG + chr3_1:82032125-82032144 Msa0380360:CDS 45.0%
AGAAGATTACCAGGCTTACC+AGG - chr3_1:82032146-82032165 None:intergenic 45.0%
GCTATCCGTAGAAGATTACC+AGG - chr3_1:82032155-82032174 None:intergenic 45.0%
TCTTGCCAACAATCTTAGCG+GGG - chr3_1:82032178-82032197 None:intergenic 45.0%
AAAAAGAGGAGGAGCGATGG+TGG + chr3_1:82031426-82031445 Msa0380360:CDS 50.0%
ATGAGCTTAGAGGCTGGTGT+TGG + chr3_1:82031454-82031473 Msa0380360:CDS 50.0%
ACGGGAACAACTTCACCGTT+AGG - chr3_1:82031520-82031539 None:intergenic 50.0%
GTTGTTCCCGTCACTGTTGT+CGG + chr3_1:82031529-82031548 Msa0380360:CDS 50.0%
TAACCCTCCGGTAACCAACT+TGG - chr3_1:82031618-82031637 None:intergenic 50.0%
ATTTGCGGTCTCTAACCCTC+CGG - chr3_1:82031630-82031649 None:intergenic 50.0%
CTGAAGATGGCGCATAGGAA+TGG - chr3_1:82031692-82031711 None:intergenic 50.0%
CATTCCTATGCGCCATCTTC+AGG + chr3_1:82031690-82031709 Msa0380360:CDS 50.0%
AACTCCTGAAGATGGCGCAT+AGG - chr3_1:82031697-82031716 None:intergenic 50.0%
TTGAAAACCCTTGCCGATGG+TGG - chr3_1:82031812-82031831 None:intergenic 50.0%
! ACCATCGGCAAGGGTTTTCA+AGG + chr3_1:82031811-82031830 Msa0380360:CDS 50.0%
ACCTTGAAAACCCTTGCCGA+TGG - chr3_1:82031815-82031834 None:intergenic 50.0%
CTCTTGGAACCATGGCTCAT+TGG - chr3_1:82031960-82031979 None:intergenic 50.0%
GTCTGTGACTCTTGGAACCA+TGG - chr3_1:82031968-82031987 None:intergenic 50.0%
CAACTTGGATCCATTGGTGC+CGG + chr3_1:82031987-82032006 Msa0380360:CDS 50.0%
TACACCTGGTCGCGTATACA+AGG + chr3_1:82032013-82032032 Msa0380360:CDS 50.0%
ACACCTGGTCGCGTATACAA+GGG + chr3_1:82032014-82032033 Msa0380360:CDS 50.0%
TTTCCCTTGTATACGCGACC+AGG - chr3_1:82032020-82032039 None:intergenic 50.0%
AGGGAAAGAAGATGCCTGGT+AGG + chr3_1:82032033-82032052 Msa0380360:CDS 50.0%
ATAGCCCCCGCTAAGATTGT+TGG + chr3_1:82032170-82032189 Msa0380360:CDS 50.0%
CTTGCCAACAATCTTAGCGG+GGG - chr3_1:82032177-82032196 None:intergenic 50.0%
AAAAAGAGGAGGAGCGATGG+TGG + chr3_1:82031426-82031445 Msa0380360:CDS 50.0%
ATGAGCTTAGAGGCTGGTGT+TGG + chr3_1:82031454-82031473 Msa0380360:CDS 50.0%
ACGGGAACAACTTCACCGTT+AGG - chr3_1:82031520-82031539 None:intergenic 50.0%
GTTGTTCCCGTCACTGTTGT+CGG + chr3_1:82031529-82031548 Msa0380360:CDS 50.0%
TAACCCTCCGGTAACCAACT+TGG - chr3_1:82031618-82031637 None:intergenic 50.0%
ATTTGCGGTCTCTAACCCTC+CGG - chr3_1:82031630-82031649 None:intergenic 50.0%
CTGAAGATGGCGCATAGGAA+TGG - chr3_1:82031692-82031711 None:intergenic 50.0%
CATTCCTATGCGCCATCTTC+AGG + chr3_1:82031690-82031709 Msa0380360:CDS 50.0%
AACTCCTGAAGATGGCGCAT+AGG - chr3_1:82031697-82031716 None:intergenic 50.0%
TTGAAAACCCTTGCCGATGG+TGG - chr3_1:82031812-82031831 None:intergenic 50.0%
! ACCATCGGCAAGGGTTTTCA+AGG + chr3_1:82031811-82031830 Msa0380360:CDS 50.0%
ACCTTGAAAACCCTTGCCGA+TGG - chr3_1:82031815-82031834 None:intergenic 50.0%
CTCTTGGAACCATGGCTCAT+TGG - chr3_1:82031960-82031979 None:intergenic 50.0%
GTCTGTGACTCTTGGAACCA+TGG - chr3_1:82031968-82031987 None:intergenic 50.0%
CAACTTGGATCCATTGGTGC+CGG + chr3_1:82031987-82032006 Msa0380360:CDS 50.0%
TACACCTGGTCGCGTATACA+AGG + chr3_1:82032013-82032032 Msa0380360:CDS 50.0%
ACACCTGGTCGCGTATACAA+GGG + chr3_1:82032014-82032033 Msa0380360:CDS 50.0%
TTTCCCTTGTATACGCGACC+AGG - chr3_1:82032020-82032039 None:intergenic 50.0%
AGGGAAAGAAGATGCCTGGT+AGG + chr3_1:82032033-82032052 Msa0380360:CDS 50.0%
ATAGCCCCCGCTAAGATTGT+TGG + chr3_1:82032170-82032189 Msa0380360:CDS 50.0%
CTTGCCAACAATCTTAGCGG+GGG - chr3_1:82032177-82032196 None:intergenic 50.0%
!! AGAGGCTGGTGTTGGTGTGA+TGG + chr3_1:82031462-82031481 Msa0380360:CDS 55.0%
!! GAGGCTGGTGTTGGTGTGAT+GGG + chr3_1:82031463-82031482 Msa0380360:CDS 55.0%
ATCAAAACCGACGCCACCGA+CGG + chr3_1:82031580-82031599 Msa0380360:CDS 55.0%
TTGGACGGCGTTGTAACCGT+CGG - chr3_1:82031599-82031618 None:intergenic 55.0%
GGTTACAACGCCGTCCAAGT+TGG + chr3_1:82031601-82031620 Msa0380360:CDS 55.0%
!! ACGCCGTCCAAGTTGGTTAC+CGG + chr3_1:82031608-82031627 Msa0380360:CDS 55.0%
CCTCCGGTAACCAACTTGGA+CGG - chr3_1:82031614-82031633 None:intergenic 55.0%
!! CGTCCAAGTTGGTTACCGGA+GGG + chr3_1:82031612-82031631 Msa0380360:CDS 55.0%
GATGTCTCTGGCACCACCAT+CGG + chr3_1:82031796-82031815 Msa0380360:CDS 55.0%
AGGTGTAGTTCCGGCACCAA+TGG - chr3_1:82032000-82032019 None:intergenic 55.0%
!! ATTGGTGCCGGAACTACACC+TGG + chr3_1:82031999-82032018 Msa0380360:CDS 55.0%
TACGCGACCAGGTGTAGTTC+CGG - chr3_1:82032009-82032028 None:intergenic 55.0%
AAGATGCCTGGTAGGATGGG+TGG + chr3_1:82032041-82032060 Msa0380360:CDS 55.0%
TTGGTTCCACCCATCCTACC+AGG - chr3_1:82032050-82032069 None:intergenic 55.0%
GTAGGATGGGTGGAACCAAC+AGG + chr3_1:82032051-82032070 Msa0380360:CDS 55.0%
!! AGAGGCTGGTGTTGGTGTGA+TGG + chr3_1:82031462-82031481 Msa0380360:CDS 55.0%
!! GAGGCTGGTGTTGGTGTGAT+GGG + chr3_1:82031463-82031482 Msa0380360:CDS 55.0%
ATCAAAACCGACGCCACCGA+CGG + chr3_1:82031580-82031599 Msa0380360:CDS 55.0%
TTGGACGGCGTTGTAACCGT+CGG - chr3_1:82031599-82031618 None:intergenic 55.0%
GGTTACAACGCCGTCCAAGT+TGG + chr3_1:82031601-82031620 Msa0380360:CDS 55.0%
!! ACGCCGTCCAAGTTGGTTAC+CGG + chr3_1:82031608-82031627 Msa0380360:CDS 55.0%
CCTCCGGTAACCAACTTGGA+CGG - chr3_1:82031614-82031633 None:intergenic 55.0%
!! CGTCCAAGTTGGTTACCGGA+GGG + chr3_1:82031612-82031631 Msa0380360:CDS 55.0%
GATGTCTCTGGCACCACCAT+CGG + chr3_1:82031796-82031815 Msa0380360:CDS 55.0%
AGGTGTAGTTCCGGCACCAA+TGG - chr3_1:82032000-82032019 None:intergenic 55.0%
!! ATTGGTGCCGGAACTACACC+TGG + chr3_1:82031999-82032018 Msa0380360:CDS 55.0%
TACGCGACCAGGTGTAGTTC+CGG - chr3_1:82032009-82032028 None:intergenic 55.0%
AAGATGCCTGGTAGGATGGG+TGG + chr3_1:82032041-82032060 Msa0380360:CDS 55.0%
TTGGTTCCACCCATCCTACC+AGG - chr3_1:82032050-82032069 None:intergenic 55.0%
GTAGGATGGGTGGAACCAAC+AGG + chr3_1:82032051-82032070 Msa0380360:CDS 55.0%
GTTGTAACCGTCGGTGGCGT+CGG - chr3_1:82031590-82031609 None:intergenic 60.0%
!! CCGTCCAAGTTGGTTACCGG+AGG + chr3_1:82031611-82031630 Msa0380360:CDS 60.0%
TCTGGCACCACCATCGGCAA+GGG + chr3_1:82031802-82031821 Msa0380360:CDS 60.0%
GGTGCTCTTCCTGGTAAGCC+TGG + chr3_1:82032134-82032153 Msa0380360:CDS 60.0%
GTTGTAACCGTCGGTGGCGT+CGG - chr3_1:82031590-82031609 None:intergenic 60.0%
!! CCGTCCAAGTTGGTTACCGG+AGG + chr3_1:82031611-82031630 Msa0380360:CDS 60.0%
TCTGGCACCACCATCGGCAA+GGG + chr3_1:82031802-82031821 Msa0380360:CDS 60.0%
GGTGCTCTTCCTGGTAAGCC+TGG + chr3_1:82032134-82032153 Msa0380360:CDS 60.0%
GACGGCGTTGTAACCGTCGG+TGG - chr3_1:82031596-82031615 None:intergenic 65.0%
CTCTGGCACCACCATCGGCA+AGG + chr3_1:82031801-82031820 Msa0380360:CDS 65.0%
GACGGCGTTGTAACCGTCGG+TGG - chr3_1:82031596-82031615 None:intergenic 65.0%
CTCTGGCACCACCATCGGCA+AGG + chr3_1:82031801-82031820 Msa0380360:CDS 65.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 82031243 82032409 82031243 ID=Msa0380360;Name=Msa0380360
chr3_1 mRNA 82031243 82032409 82031243 ID=Msa0380360-mRNA-1;Parent=Msa0380360;Name=Msa0380360-mRNA-1;_AED=0.01;_eAED=0.01;_QI=67|1|1|1|1|1|2|195|270
chr3_1 exon 82031243 82031832 82031243 ID=Msa0380360-mRNA-1:exon:20861;Parent=Msa0380360-mRNA-1
chr3_1 exon 82031925 82032409 82031925 ID=Msa0380360-mRNA-1:exon:20862;Parent=Msa0380360-mRNA-1
chr3_1 five_prime_UTR 82031243 82031309 82031243 ID=Msa0380360-mRNA-1:five_prime_utr;Parent=Msa0380360-mRNA-1
chr3_1 CDS 82031310 82031832 82031310 ID=Msa0380360-mRNA-1:cds;Parent=Msa0380360-mRNA-1
chr3_1 CDS 82031925 82032214 82031925 ID=Msa0380360-mRNA-1:cds;Parent=Msa0380360-mRNA-1
chr3_1 three_prime_UTR 82032215 82032409 82032215 ID=Msa0380360-mRNA-1:three_prime_utr;Parent=Msa0380360-mRNA-1
Gene Sequence

>Msa0380360

ATGTCTATCATTTCCTCACCATTTTCCATTTCAATACCTTCTTCTAATTCTTCTTCTTCACTTTCCTTTTCAACTTCTTTTTCTACTCAATTTGTGAAATTGCAGCAGCAGCAAAGAAAAAGAGGAGGAGCGATGGTGGTGAAAATGAGCTTAGAGGCTGGTGTTGGTGTGATGGGTACCAAATTGGGAATGATGAGCTTTTTCCAACCTAACGGTGAAGTTGTTCCCGTCACTGTTGTCGGTTTCAAAGAAGGCAACATCGTCACTCAAATCAAAACCGACGCCACCGACGGTTACAACGCCGTCCAAGTTGGTTACCGGAGGGTTAGAGACCGCAAATTGACCAAACCTGAAATGGGTCATCTTGAAAAGGTTGGAGCCATTCCTATGCGCCATCTTCAGGAGTTTCGTCTTCAATCCGTTGATGGTTTTGAACCTAATCAGCGCCTTGTATTTGATGAGCTTTTCAATGAAGGTGATCTTGTTGATGTCTCTGGCACCACCATCGGCAAGGGTTTTCAAGGTGGTATCAAGCGTCATAACTTCAAAAGAGGACCAATGAGCCATGGTTCCAAGAGTCACAGACAACTTGGATCCATTGGTGCCGGAACTACACCTGGTCGCGTATACAAGGGAAAGAAGATGCCTGGTAGGATGGGTGGAACCAACAGGAAGACCAGAAAGCTTAAGATTGTTAAAATTGATAAAGATCTTAATGTTATCATGATCAAAGGTGCTCTTCCTGGTAAGCCTGGTAATCTTCTACGGATAGCCCCCGCTAAGATTGTTGGCAAGAACATTCCAAAGAATTAA

Protein sequence

>Msa0380360

MSIISSPFSISIPSSNSSSSLSFSTSFSTQFVKLQQQQRKRGGAMVVKMSLEAGVGVMGTKLGMMSFFQPNGEVVPVTVVGFKEGNIVTQIKTDATDGYNAVQVGYRRVRDRKLTKPEMGHLEKVGAIPMRHLQEFRLQSVDGFEPNQRLVFDELFNEGDLVDVSGTTIGKGFQGGIKRHNFKRGPMSHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTNRKTRKLKIVKIDKDLNVIMIKGALPGKPGNLLRIAPAKIVGKNIPKN*