AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0214730


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0214730 MtrunA17_Chr2g0315761 97.555 409 7 2 1 408 1 407 0.0 815
Msa0214730 MtrunA17_Chr3g0114521 52.846 369 172 2 30 396 21 389 9.72e-139 401
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0214730 AT3G14930.2 76.440 382 88 1 23 404 28 407 0.0 617
Msa0214730 AT3G14930.1 76.440 382 88 1 23 404 28 407 0.0 617
Msa0214730 AT3G14930.3 80.851 329 63 0 75 403 1 329 0.0 569
Msa0214730 AT2G40490.1 51.070 374 171 2 35 396 21 394 3.57e-136 395

Find 139 sgRNAs with CRISPR-Local

Find 336 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCACTTGTTCTTTATATAAA+TGG 0.110324 2_1:+59315730 Msa0214730:CDS
GATGAAGATATGGGTAATTT+TGG 0.116657 2_1:+59311940 Msa0214730:five_prime_UTR
GAACTTTCAGATTGTAAATT+TGG 0.179718 2_1:+59315684 Msa0214730:intron
CTGGTATTTCAAGCCATTTC+TGG 0.192973 2_1:+59316910 Msa0214730:three_prime_UTR
GACACTGGAGTTGATGTTAT+TGG 0.226105 2_1:+59315781 Msa0214730:CDS
ACGCTCTGAGGAGGGATTAA+AGG 0.251035 2_1:+59314693 Msa0214730:CDS
TAGTTTACCTCTTTGATATA+AGG 0.260471 2_1:-59315141 None:intergenic
GTTCTATTATACAGTGGTTT+AGG 0.268295 2_1:+59312161 Msa0214730:intron
TTTGACAAGCTTAGATTTGT+AGG 0.273804 2_1:+59314733 Msa0214730:CDS
TACCCATATCTTCATCTTAG+TGG 0.293666 2_1:-59311933 None:intergenic
GCGCATGATAAATTAATTAG+AGG 0.300435 2_1:+59317055 Msa0214730:three_prime_UTR
TTCAGGGTTGTGAGGTCTGC+AGG 0.310692 2_1:+59316715 Msa0214730:intron
AGAAAGAAGGTTGAAGCAAT+TGG 0.311062 2_1:-59312213 None:intergenic
GAAGTAAGGTCAACATTCTT+AGG 0.311188 2_1:+59312010 Msa0214730:five_prime_UTR
GTGAGAGTGAGAGAGGGTTT+TGG 0.312464 2_1:-59312248 None:intergenic
ATTACTATCAGATCCTCTTT+TGG 0.323417 2_1:+59314390 Msa0214730:intron
ATACAGCACCACACATTCTA+AGG 0.323646 2_1:+59314983 Msa0214730:CDS
GAACACCATGCCCAAGATTA+AGG 0.327102 2_1:-59316753 None:intergenic
ACCTCTGAATTTCTTCTGTT+AGG 0.334578 2_1:-59315909 None:intergenic
TGTATGACACATGCTCTTAA+TGG 0.340470 2_1:-59314965 None:intergenic
AGCCATTTCTGGAAGAGTTC+AGG 0.359288 2_1:+59316921 Msa0214730:three_prime_UTR
AATCCACTAAGATGAAGATA+TGG 0.359396 2_1:+59311930 Msa0214730:five_prime_UTR
TAAAGAACAAGTGGTGTGTC+TGG 0.365756 2_1:-59315721 None:intergenic
TAGAAATTTCTTTGCAGCCT+TGG 0.370718 2_1:+59314554 Msa0214730:CDS
CTTGGGCATGGTGTTCTTGT+TGG 0.374900 2_1:+59316760 Msa0214730:CDS
ACTCGACTGGACAGTGGATA+TGG 0.377098 2_1:+59315804 Msa0214730:CDS
CATGCCGGAGGACGACTAAC+TGG 0.382541 2_1:-59314433 None:intergenic
GCATACAAATATTTGATTCA+TGG 0.385365 2_1:+59315076 Msa0214730:CDS
GTTCTTTATATAAATGGAAA+TGG 0.386673 2_1:+59315736 Msa0214730:CDS
CCTCTGAATTTCTTCTGTTA+GGG 0.395997 2_1:-59315908 None:intergenic
AGACAACACATCCTTAATCT+TGG 0.412065 2_1:+59316742 Msa0214730:CDS
AACCTGAACTCTTCCAGAAA+TGG 0.413215 2_1:-59316923 None:intergenic
CTTACACCTCTACCTGCGTT+CGG 0.413940 2_1:+59314619 Msa0214730:CDS
CTTTATTATACTCAAACAAA+TGG 0.414765 2_1:-59317085 None:intergenic
GAGAAAATAATTACTCCATC+AGG 0.416476 2_1:-59314589 None:intergenic
CCTGTTGTACTTACTTTGCC+TGG 0.417896 2_1:+59316891 Msa0214730:three_prime_UTR
CATACAAATATTTGATTCAT+GGG 0.420865 2_1:+59315077 Msa0214730:CDS
CGTATCGGTGACTGTATAAC+AGG 0.424760 2_1:-59314673 None:intergenic
CTAAGCTTGTCAAAGTCAAT+CGG 0.426657 2_1:-59314724 None:intergenic
TTATCGTTTATTTAGGTTGG+TGG 0.430964 2_1:+59314856 Msa0214730:intron
TTACACCTCTACCTGCGTTC+GGG 0.433960 2_1:+59314620 Msa0214730:CDS
AAATGTGCTACAGCTTCTTC+CGG 0.434613 2_1:-59316787 None:intergenic
GAAGAAGAAGATTAGGTAGC+GGG 0.442728 2_1:+59315833 Msa0214730:CDS
AAGAAGAAGGAGAAGAAGTA+AGG 0.443851 2_1:+59311996 Msa0214730:five_prime_UTR
CCATACCTACTTCCATCAAC+AGG 0.449454 2_1:+59312072 Msa0214730:CDS
CCTGTTGATGGAAGTAGGTA+TGG 0.452188 2_1:-59312072 None:intergenic
AGAAGATTAGGTAGCGGGAT+TGG 0.454956 2_1:+59315838 Msa0214730:CDS
CCAGGCAAAGTAAGTACAAC+AGG 0.456358 2_1:-59316891 None:intergenic
GTTTGAAAGGAGAAGAAAGA+AGG 0.460520 2_1:-59312226 None:intergenic
TCTTCTGTTAGGGCAGTAAG+AGG 0.462239 2_1:-59315898 None:intergenic
GACAACACATCCTTAATCTT+GGG 0.466437 2_1:+59316743 Msa0214730:CDS
TCTGCCGCCTCATCTTCTAA+TGG 0.467553 2_1:+59312290 Msa0214730:CDS
GACAACTGCCGCCTCATATG+TGG 0.470143 2_1:+59315103 Msa0214730:CDS
GGCTATTGGTAGCAGTTAAG+AGG 0.470435 2_1:+59311968 Msa0214730:five_prime_UTR
AAACTTGGTGAGAGTGAGAG+AGG 0.470788 2_1:-59312255 None:intergenic
AGTGAAGGAAAACCTGTTGA+TGG 0.472377 2_1:-59312084 None:intergenic
GACCAGAGTTCCCACATATG+AGG 0.473769 2_1:-59315114 None:intergenic
GCTGATGGAAGAAGAAGATT+AGG 0.476250 2_1:+59315826 Msa0214730:CDS
TGTGGGAGCACCTTGGACAT+TGG 0.478006 2_1:+59314900 Msa0214730:CDS
CTCGCAGCCTTAACCAAAAG+AGG 0.480396 2_1:-59314403 None:intergenic
GACATTGGCAACGTATATAG+TGG 0.481356 2_1:+59314915 Msa0214730:CDS
AGAGGAGAGAATAAAGAAGC+AGG 0.483840 2_1:-59315880 None:intergenic
GGCAACGTATATAGTGGAAG+GGG 0.484531 2_1:+59314921 Msa0214730:CDS
CAGTCGTCTCTGACCTCTCT+CGG 0.502489 2_1:-59314522 None:intergenic
CACTTCAATTCAATTCCTCA+TGG 0.503740 2_1:+59312046 Msa0214730:exon
CGAACGCAGGTAGAGGTGTA+AGG 0.504596 2_1:-59314618 None:intergenic
CGCCTCATATGTGGGAACTC+TGG 0.505272 2_1:+59315112 Msa0214730:CDS
TCAGGGTTGTGAGGTCTGCA+GGG 0.509464 2_1:+59316716 Msa0214730:intron
TCTGACCTCTCTCGGAAGGA+TGG 0.513347 2_1:-59314514 None:intergenic
GCATGGATGATGCGCCAAGC+AGG 0.516013 2_1:+59314451 Msa0214730:CDS
TATTATACAGTGGTTTAGGA+TGG 0.516663 2_1:+59312165 Msa0214730:intron
TTAAGAGGAAAAGAAGAAGA+AGG 0.517509 2_1:+59311983 Msa0214730:five_prime_UTR
CAGAAATGGCTTGAAATACC+AGG 0.529155 2_1:-59316909 None:intergenic
CAAATATTTGATTCATGGGG+TGG 0.529717 2_1:+59315081 Msa0214730:CDS
TCTGCTTTCTCATTTGTCAA+AGG 0.532489 2_1:+59315008 Msa0214730:CDS
TCGATCCCGAACGCAGGTAG+AGG 0.533836 2_1:-59314625 None:intergenic
TTGTCACTTTCAGGGTTGTG+AGG 0.534765 2_1:+59316707 Msa0214730:intron
CAGTTAGTCGTCCTCCGGCA+TGG 0.536979 2_1:+59314434 Msa0214730:CDS
CACATTTCTTTGACGTCGCG+AGG 0.537882 2_1:+59316803 Msa0214730:CDS
TAGCCATGTACCTTCCTGCT+TGG 0.546091 2_1:-59314465 None:intergenic
TTGACTTGTTCTGATGAAGT+TGG 0.547484 2_1:+59317134 Msa0214730:three_prime_UTR
AGATCCAGTTAGTCGTCCTC+CGG 0.547560 2_1:+59314429 Msa0214730:CDS
AGATTAAGGATGTGTTGTCT+AGG 0.548749 2_1:-59316739 None:intergenic
ATCCACTAAGATGAAGATAT+GGG 0.549565 2_1:+59311931 Msa0214730:five_prime_UTR
AGAGCAAGTGAGAGTAAACT+TGG 0.554435 2_1:-59312270 None:intergenic
ATTATACTCAAACAAATGGA+AGG 0.554499 2_1:-59317081 None:intergenic
TAAGCTTGTCAAAGTCAATC+GGG 0.554949 2_1:-59314723 None:intergenic
GGAAGAAGAAGATTAGGTAG+CGG 0.558618 2_1:+59315832 Msa0214730:CDS
GAATTTGTACATTGCTGTGT+CGG 0.559960 2_1:+59316990 Msa0214730:three_prime_UTR
AACTTGGTGAGAGTGAGAGA+GGG 0.562584 2_1:-59312254 None:intergenic
GCTTGGCGCATCATCCATGC+CGG 0.565380 2_1:-59314448 None:intergenic
AAAGAACAAGTGGTGTGTCT+GGG 0.567198 2_1:-59315720 None:intergenic
CGTCTCTGACCTCTCTCGGA+AGG 0.569014 2_1:-59314518 None:intergenic
GAAAACCTGTTGATGGAAGT+AGG 0.570172 2_1:-59312077 None:intergenic
CTTTGACATAGAAGATGTGA+GGG 0.572515 2_1:+59314648 Msa0214730:CDS
GCGCCAAGCAGGAAGGTACA+TGG 0.572903 2_1:+59314462 Msa0214730:CDS
AACATCCATCCTTCCGAGAG+AGG 0.577108 2_1:+59314509 Msa0214730:CDS
AATCCCTCCTCAGAGCGTAT+CGG 0.581435 2_1:-59314688 None:intergenic
TTGGCAACGTATATAGTGGA+AGG 0.583350 2_1:+59314919 Msa0214730:CDS
TTGATGTTATTGGACTCGAC+TGG 0.583463 2_1:+59315791 Msa0214730:CDS
CTTTATATAAATGGAAATGG+TGG 0.584814 2_1:+59315739 Msa0214730:CDS
AGCAGAGTCCTTAGAATGTG+TGG 0.585181 2_1:-59314991 None:intergenic
CCATTTATATAAAGAACAAG+TGG 0.585667 2_1:-59315730 None:intergenic
GCAATTGGATTGTTGAAACA+AGG 0.587778 2_1:-59312198 None:intergenic
ACAACTGCCGCCTCATATGT+GGG 0.588080 2_1:+59315104 Msa0214730:CDS
ACTTAAGATCCTGCGGCAAG+AGG 0.593099 2_1:+59314762 Msa0214730:CDS
GAGGAGAGAATAAAGAAGCA+GGG 0.594985 2_1:-59315879 None:intergenic
GTCAAAGCCTTATATCAAAG+AGG 0.596608 2_1:+59315134 Msa0214730:CDS
TCAAAGTCGATCCCGAACGC+AGG 0.597771 2_1:-59314631 None:intergenic
TAGCTGCATAAGAATCAAGA+AGG 0.599086 2_1:-59316950 None:intergenic
CACATCCTTAATCTTGGGCA+TGG 0.600175 2_1:+59316748 Msa0214730:CDS
ATATACGTTGCCAATGTCCA+AGG 0.600785 2_1:-59314910 None:intergenic
TGGTGTTCTTGTTGGCACAC+CGG 0.601899 2_1:+59316768 Msa0214730:CDS
TGGCAACGTATATAGTGGAA+GGG 0.603156 2_1:+59314920 Msa0214730:CDS
GGAAGTACCATTAGAAGATG+AGG 0.606317 2_1:-59312297 None:intergenic
TGGACAGTGGATATGGCTGA+TGG 0.608369 2_1:+59315811 Msa0214730:CDS
TCACCGATACGCTCTGAGGA+GGG 0.608994 2_1:+59314685 Msa0214730:CDS
GTCACCGATACGCTCTGAGG+AGG 0.616864 2_1:+59314684 Msa0214730:CDS
ACTTTGACATAGAAGATGTG+AGG 0.620333 2_1:+59314647 Msa0214730:CDS
GATTGGTGTGCAAGGAAACG+TGG 0.621871 2_1:+59315855 Msa0214730:CDS
TGTCTATCATACGCTCGAGA+AGG 0.625970 2_1:-59315762 None:intergenic
TGGCGCATCATCCATGCCGG+AGG 0.630576 2_1:-59314445 None:intergenic
CTCGAGCGTATGATAGACAC+TGG 0.632830 2_1:+59315766 Msa0214730:CDS
AGTGAGCCCCAGATTCCACT+TGG 0.635817 2_1:-59315053 None:intergenic
GGTAGCGGGATTGGTGTGCA+AGG 0.635971 2_1:+59315847 Msa0214730:CDS
GGATGATGCGCCAAGCAGGA+AGG 0.641154 2_1:+59314455 Msa0214730:CDS
TCCCACAAAACCTAAAACAG+CGG 0.645378 2_1:-59314884 None:intergenic
TCAGGCCTAAAAGCATTCCA+AGG 0.646890 2_1:-59314571 None:intergenic
ATACAAATATTTGATTCATG+GGG 0.650037 2_1:+59315078 Msa0214730:CDS
CCCTAACAGAAGAAATTCAG+AGG 0.651466 2_1:+59315908 Msa0214730:CDS
CAGAGTTCCCACATATGAGG+CGG 0.665889 2_1:-59315111 None:intergenic
GAGAATCACTTAAGATCCTG+CGG 0.672224 2_1:+59314755 Msa0214730:CDS
GGCAAAGTAAGTACAACAGG+TGG 0.683334 2_1:-59316888 None:intergenic
TATTGGACTCGACTGGACAG+TGG 0.685653 2_1:+59315798 Msa0214730:CDS
AGTACCATTAGAAGATGAGG+CGG 0.689225 2_1:-59312294 None:intergenic
ACAGTCACCGATACGCTCTG+AGG 0.696424 2_1:+59314681 Msa0214730:CDS
GCAACGTATATAGTGGAAGG+GGG 0.725564 2_1:+59314922 Msa0214730:CDS
AAGTAGGTATGGTTTCCATG+AGG 0.746497 2_1:-59312061 None:intergenic
TTTGACATAGAAGATGTGAG+GGG 0.768540 2_1:+59314649 Msa0214730:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTCTATATATATTATGATAA+AGG + chr2_1:59313705-59313724 Msa0214730:intron 10.0%
!! TCTATATATATTATGATAAA+GGG + chr2_1:59313706-59313725 Msa0214730:intron 10.0%
!!! TAATTTTTCTATTTAAATCA+AGG + chr2_1:59313952-59313971 Msa0214730:intron 10.0%
!! AATTATTAGTTAATAGTGAT+GGG - chr2_1:59312594-59312613 None:intergenic 15.0%
!! AAATTATTAGTTAATAGTGA+TGG - chr2_1:59312595-59312614 None:intergenic 15.0%
!! ATCACTATTAACTAATAATT+TGG + chr2_1:59312594-59312613 Msa0214730:intron 15.0%
!! TCACTATTAACTAATAATTT+GGG + chr2_1:59312595-59312614 Msa0214730:intron 15.0%
!! ATAAATGATGTATCAAATTA+TGG - chr2_1:59312741-59312760 None:intergenic 15.0%
!! TAATTTGATACATCATTTAT+TGG + chr2_1:59312741-59312760 Msa0214730:intron 15.0%
!!! ATTTATTAGTAGCATTTTTT+GGG + chr2_1:59313207-59313226 Msa0214730:intron 15.0%
!!! TTTACATTGTTTTAAAACAA+AGG + chr2_1:59313875-59313894 Msa0214730:intron 15.0%
!! TTAGTTTCAATATTATGAAT+TGG + chr2_1:59316485-59316504 Msa0214730:intron 15.0%
!! AAAAAAAAAAACTGAGAGAA+TGG - chr2_1:59312321-59312340 None:intergenic 20.0%
!! TAAAAAATGTTATCATGACA+TGG - chr2_1:59312420-59312439 None:intergenic 20.0%
!! ATTATTAGTTAATAGTGATG+GGG - chr2_1:59312593-59312612 None:intergenic 20.0%
!! CACTATTAACTAATAATTTG+GGG + chr2_1:59312596-59312615 Msa0214730:intron 20.0%
!!! TTTTAAATTTCAATTGAGTC+GGG - chr2_1:59313079-59313098 None:intergenic 20.0%
!!! GTTTTAAATTTCAATTGAGT+CGG - chr2_1:59313080-59313099 None:intergenic 20.0%
!!! GATTTATTAGTAGCATTTTT+TGG + chr2_1:59313206-59313225 Msa0214730:intron 20.0%
!!! TTTATTAGTAGCATTTTTTG+GGG + chr2_1:59313208-59313227 Msa0214730:intron 20.0%
!! TTGAAAAGATTTAGATATTG+TGG + chr2_1:59313344-59313363 Msa0214730:intron 20.0%
!!! ACTTTTTTAGGTTATAATGA+AGG + chr2_1:59313445-59313464 Msa0214730:intron 20.0%
!! CATACAAATATTTGATTCAT+GGG + chr2_1:59315077-59315096 Msa0214730:CDS 20.0%
!! ATACAAATATTTGATTCATG+GGG + chr2_1:59315078-59315097 Msa0214730:CDS 20.0%
!!! AAACCTAAAACAATTTTATC+AGG - chr2_1:59315192-59315211 None:intergenic 20.0%
!!! AATTTCTTTTGTTGAAGAAA+GGG + chr2_1:59315245-59315264 Msa0214730:intron 20.0%
!! TATAATAAATAGCAAGTTCT+AGG + chr2_1:59315607-59315626 Msa0214730:intron 20.0%
!! AAAATGAGAAAAAGAGAAAT+TGG - chr2_1:59315648-59315667 None:intergenic 20.0%
!! GTTCTTTATATAAATGGAAA+TGG + chr2_1:59315736-59315755 Msa0214730:CDS 20.0%
!! CTTTATTATACTCAAACAAA+TGG - chr2_1:59317088-59317107 None:intergenic 20.0%
!! ATGAAGATATGGGTAATTTT+GGG + chr2_1:59311941-59311960 Msa0214730:five_prime_UTR 25.0%
!! GAATTTGTTCTATTATACAG+TGG + chr2_1:59312155-59312174 Msa0214730:intron 25.0%
! AAAAGCTCTTATACATGATT+AGG - chr2_1:59312564-59312583 None:intergenic 25.0%
!! AGGTTTATGAGCATATATTT+TGG + chr2_1:59312696-59312715 Msa0214730:intron 25.0%
!! GGTTTATGAGCATATATTTT+GGG + chr2_1:59312697-59312716 Msa0214730:intron 25.0%
! ACAAAAATTATACTCTGACA+TGG + chr2_1:59312849-59312868 Msa0214730:intron 25.0%
! CAAAAATTATACTCTGACAT+GGG + chr2_1:59312850-59312869 Msa0214730:intron 25.0%
! TTCATACTATGGCAAAATAT+GGG + chr2_1:59313045-59313064 Msa0214730:intron 25.0%
!!! TCGTTTTAGTTGTTGAAATT+TGG + chr2_1:59313173-59313192 Msa0214730:intron 25.0%
!!! TTATTAGTAGCATTTTTTGG+GGG + chr2_1:59313209-59313228 Msa0214730:intron 25.0%
!!! TGGTTATTTTGCTATGTTAT+TGG + chr2_1:59313248-59313267 Msa0214730:intron 25.0%
! ACTATGTTGTAAGAATCAAA+AGG + chr2_1:59313274-59313293 Msa0214730:intron 25.0%
! CTATGTTGTAAGAATCAAAA+GGG + chr2_1:59313275-59313294 Msa0214730:intron 25.0%
! TATGTTGTAAGAATCAAAAG+GGG + chr2_1:59313276-59313295 Msa0214730:intron 25.0%
! TTCAAAAAAGGTTCAACAAT+TGG - chr2_1:59313414-59313433 None:intergenic 25.0%
!!! AATTGTTGAACCTTTTTTGA+AGG + chr2_1:59313413-59313432 Msa0214730:intron 25.0%
!! TGATAATGAACCTTCAAAAA+AGG - chr2_1:59313426-59313445 None:intergenic 25.0%
!!! AGGTTCATTATCACTTTTTT+AGG + chr2_1:59313433-59313452 Msa0214730:intron 25.0%
! AGATCCAATAAATATGAGTA+AGG + chr2_1:59313674-59313693 Msa0214730:intron 25.0%
! GATCCAATAAATATGAGTAA+GGG + chr2_1:59313675-59313694 Msa0214730:intron 25.0%
! ATCCAATAAATATGAGTAAG+GGG + chr2_1:59313676-59313695 Msa0214730:intron 25.0%
! AAATGTGTAACACAGATTTA+TGG + chr2_1:59313819-59313838 Msa0214730:intron 25.0%
! AAGGTGAGAAGATTAAATTA+AGG - chr2_1:59314025-59314044 None:intergenic 25.0%
! CTGAGTTTGTAGAAAAATTA+AGG - chr2_1:59314091-59314110 None:intergenic 25.0%
! AAATAAACGATAAGTAGTGA+GGG - chr2_1:59314849-59314868 None:intergenic 25.0%
! TAAATAAACGATAAGTAGTG+AGG - chr2_1:59314850-59314869 None:intergenic 25.0%
! TCACTACTTATCGTTTATTT+AGG + chr2_1:59314849-59314868 Msa0214730:intron 25.0%
! TACTTATCGTTTATTTAGGT+TGG + chr2_1:59314853-59314872 Msa0214730:intron 25.0%
! GCATACAAATATTTGATTCA+TGG + chr2_1:59315076-59315095 Msa0214730:CDS 25.0%
! TAGTTTACCTCTTTGATATA+AGG - chr2_1:59315144-59315163 None:intergenic 25.0%
! ATATCAAAGAGGTAAACTAA+AGG + chr2_1:59315145-59315164 Msa0214730:intron 25.0%
! TTATCAGGCAAAAAAGAAAT+GGG - chr2_1:59315177-59315196 None:intergenic 25.0%
! TTTATCAGGCAAAAAAGAAA+TGG - chr2_1:59315178-59315197 None:intergenic 25.0%
!! TTGCCTGATAAAATTGTTTT+AGG + chr2_1:59315186-59315205 Msa0214730:intron 25.0%
! CTTTCTTCAACAAAAGAAAT+TGG - chr2_1:59315246-59315265 None:intergenic 25.0%
!! CAATTTCTTTTGTTGAAGAA+AGG + chr2_1:59315244-59315263 Msa0214730:intron 25.0%
!! TTGTAAATTTTTGCTGCAAA+TGG + chr2_1:59315411-59315430 Msa0214730:intron 25.0%
! GAACTTTCAGATTGTAAATT+TGG + chr2_1:59315684-59315703 Msa0214730:intron 25.0%
! CCATTTATATAAAGAACAAG+TGG - chr2_1:59315733-59315752 None:intergenic 25.0%
! CCACTTGTTCTTTATATAAA+TGG + chr2_1:59315730-59315749 Msa0214730:CDS 25.0%
! CTTTATATAAATGGAAATGG+TGG + chr2_1:59315739-59315758 Msa0214730:CDS 25.0%
! GACACAAATGATAAAGTTAA+TGG - chr2_1:59315949-59315968 None:intergenic 25.0%
! TAAACAAAAAAGATGCAGAA+AGG - chr2_1:59316320-59316339 None:intergenic 25.0%
! ATTATACTCAAACAAATGGA+AGG - chr2_1:59317084-59317103 None:intergenic 25.0%
AATCCACTAAGATGAAGATA+TGG + chr2_1:59311930-59311949 Msa0214730:five_prime_UTR 30.0%
ATCCACTAAGATGAAGATAT+GGG + chr2_1:59311931-59311950 Msa0214730:five_prime_UTR 30.0%
! GATGAAGATATGGGTAATTT+TGG + chr2_1:59311940-59311959 Msa0214730:five_prime_UTR 30.0%
!! ATATGGGTAATTTTGGGTAA+TGG + chr2_1:59311947-59311966 Msa0214730:five_prime_UTR 30.0%
!! TAATTTTGGGTAATGGCTAT+TGG + chr2_1:59311954-59311973 Msa0214730:five_prime_UTR 30.0%
TTAAGAGGAAAAGAAGAAGA+AGG + chr2_1:59311983-59312002 Msa0214730:five_prime_UTR 30.0%
GTTCTATTATACAGTGGTTT+AGG + chr2_1:59312161-59312180 Msa0214730:intron 30.0%
TATTATACAGTGGTTTAGGA+TGG + chr2_1:59312165-59312184 Msa0214730:intron 30.0%
TAATTGTTCCCAATTTGACT+TGG + chr2_1:59312354-59312373 Msa0214730:intron 30.0%
! AATTGTTCCCAATTTGACTT+GGG + chr2_1:59312355-59312374 Msa0214730:intron 30.0%
AAATAAGCCCAAGTCAAATT+GGG - chr2_1:59312365-59312384 None:intergenic 30.0%
AAAATAAGCCCAAGTCAAAT+TGG - chr2_1:59312366-59312385 None:intergenic 30.0%
! ATTTGGGGAGAATTTTCATA+TGG + chr2_1:59312611-59312630 Msa0214730:intron 30.0%
! TTTGGGGAGAATTTTCATAT+GGG + chr2_1:59312612-59312631 Msa0214730:intron 30.0%
TCCTATGTTTGAAAAACTCT+AGG - chr2_1:59312672-59312691 None:intergenic 30.0%
!! TTTTTCAAACATAGGAGATG+AGG + chr2_1:59312676-59312695 Msa0214730:intron 30.0%
!!! TATTTTGGGATATCTGTAAG+TGG + chr2_1:59312711-59312730 Msa0214730:intron 30.0%
! CAGAAGTGTATATAGTGATT+TGG + chr2_1:59312769-59312788 Msa0214730:intron 30.0%
TGATACTACATATGTACATC+TGG - chr2_1:59312828-59312847 None:intergenic 30.0%
TTAAGAACTATCTAAGAGCA+TGG + chr2_1:59313001-59313020 Msa0214730:intron 30.0%
! CATATTTTGCCATAGTATGA+AGG - chr2_1:59313046-59313065 None:intergenic 30.0%
CTTCATACTATGGCAAAATA+TGG + chr2_1:59313044-59313063 Msa0214730:intron 30.0%
TAGATATTGTGGAATACTTG+AGG + chr2_1:59313355-59313374 Msa0214730:intron 30.0%
ATAATGAAGGCTCTTTCTAA+TGG + chr2_1:59313458-59313477 Msa0214730:intron 30.0%
TGTTAAGAGATGAATGAAAC+AGG - chr2_1:59313572-59313591 None:intergenic 30.0%
TCTGAGAATGATATCTTTCA+AGG + chr2_1:59313605-59313624 Msa0214730:intron 30.0%
AACCCCTTACTCATATTTAT+TGG - chr2_1:59313681-59313700 None:intergenic 30.0%
AAAACGTGTCAAAAAGATGA+GGG - chr2_1:59313740-59313759 None:intergenic 30.0%
TAAAACGTGTCAAAAAGATG+AGG - chr2_1:59313741-59313760 None:intergenic 30.0%
! TGACACGTTTTACTCTTTTA+TGG + chr2_1:59313749-59313768 Msa0214730:intron 30.0%
!!! CAGAAAAGTTGTAGTTTTGA+AGG + chr2_1:59313775-59313794 Msa0214730:intron 30.0%
GTGAGAAGGTGATTAAATTA+AGG - chr2_1:59313909-59313928 None:intergenic 30.0%
TTAAGCCAAAAACTGCATAT+TGG - chr2_1:59313995-59314014 None:intergenic 30.0%
GTTAATCATTTGTGACACAA+AGG - chr2_1:59314044-59314063 None:intergenic 30.0%
! CAATTTAAAACCATGCTCTT+AGG - chr2_1:59314165-59314184 None:intergenic 30.0%
!!! AAGAGCATGGTTTTAAATTG+CGG + chr2_1:59314165-59314184 Msa0214730:intron 30.0%
AGAAATGGAAGGATAATGAA+GGG - chr2_1:59314285-59314304 None:intergenic 30.0%
! ATTACTATCAGATCCTCTTT+TGG + chr2_1:59314390-59314409 Msa0214730:intron 30.0%
GAGAAAATAATTACTCCATC+AGG - chr2_1:59314592-59314611 None:intergenic 30.0%
TTTGACAAGCTTAGATTTGT+AGG + chr2_1:59314733-59314752 Msa0214730:CDS 30.0%
AAAATTTGGTTGCAACATGT+CGG + chr2_1:59314786-59314805 Msa0214730:intron 30.0%
!! TTATCGTTTATTTAGGTTGG+TGG + chr2_1:59314856-59314875 Msa0214730:intron 30.0%
! AGATTACATTGTTTTCCAAG+TGG + chr2_1:59315038-59315057 Msa0214730:CDS 30.0%
TATCAGGCAAAAAAGAAATG+GGG - chr2_1:59315176-59315195 None:intergenic 30.0%
ATGAGCTTACATAATAGTCA+AGG - chr2_1:59315458-59315477 None:intergenic 30.0%
TATTGCCATATATGTTCTAG+TGG + chr2_1:59315982-59316001 Msa0214730:intron 30.0%
TGTTGTCAATTGTCATATAG+TGG - chr2_1:59316187-59316206 None:intergenic 30.0%
AACATCAGTTTCTCATTATG+TGG - chr2_1:59316250-59316269 None:intergenic 30.0%
AGTCAGTTAAGCAAATACTA+GGG - chr2_1:59316378-59316397 None:intergenic 30.0%
AGTGATAGAAATGTTTCGTA+AGG + chr2_1:59316438-59316457 Msa0214730:intron 30.0%
AATGAGTGTTCTCATTCATT+TGG - chr2_1:59316615-59316634 None:intergenic 30.0%
CTCATTGTCATGAATAAGAT+TGG + chr2_1:59316629-59316648 Msa0214730:intron 30.0%
!! TATGATTACTTGTCACTTTC+AGG + chr2_1:59316698-59316717 Msa0214730:intron 30.0%
!! ATGATTACTTGTCACTTTCA+GGG + chr2_1:59316699-59316718 Msa0214730:intron 30.0%
GCGCATGATAAATTAATTAG+AGG + chr2_1:59317055-59317074 Msa0214730:three_prime_UTR 30.0%
TACCCATATCTTCATCTTAG+TGG - chr2_1:59311936-59311955 None:intergenic 35.0%
AAGAAGAAGGAGAAGAAGTA+AGG + chr2_1:59311996-59312015 Msa0214730:five_prime_UTR 35.0%
GAAGTAAGGTCAACATTCTT+AGG + chr2_1:59312010-59312029 Msa0214730:five_prime_UTR 35.0%
CACTTCAATTCAATTCCTCA+TGG + chr2_1:59312046-59312065 Msa0214730:exon 35.0%
GCAATTGGATTGTTGAAACA+AGG - chr2_1:59312201-59312220 None:intergenic 35.0%
AGAAAGAAGGTTGAAGCAAT+TGG - chr2_1:59312216-59312235 None:intergenic 35.0%
GTTTGAAAGGAGAAGAAAGA+AGG - chr2_1:59312229-59312248 None:intergenic 35.0%
CTACAATTGTAATCCAAGAG+TGG - chr2_1:59312530-59312549 None:intergenic 35.0%
CACTCTTGGATTACAATTGT+AGG + chr2_1:59312528-59312547 Msa0214730:intron 35.0%
TCTTATACATGATTAGGCTC+AGG - chr2_1:59312558-59312577 None:intergenic 35.0%
! AGAATTTTCATATGGGCCAT+GGG + chr2_1:59312619-59312638 Msa0214730:intron 35.0%
GTTTGAAAAACTCTAGGCAA+AGG - chr2_1:59312666-59312685 None:intergenic 35.0%
!! GCCTAGAGTTTTTCAAACAT+AGG + chr2_1:59312668-59312687 Msa0214730:intron 35.0%
TTTGAAGATTGAAGCTTCAG+AGG + chr2_1:59313119-59313138 Msa0214730:intron 35.0%
!!! TAGCATTTTTTGGGGGAAAA+AGG + chr2_1:59313216-59313235 Msa0214730:intron 35.0%
!! TCAAAAGGGGTTATTTTGTG+AGG + chr2_1:59313289-59313308 Msa0214730:intron 35.0%
!!! GTTGTTGCTGCTATTTTTGA+AGG + chr2_1:59313316-59313335 Msa0214730:intron 35.0%
AATGGTTACTTGCCTAATTC+TGG + chr2_1:59313476-59313495 Msa0214730:intron 35.0%
AGAGAACACAATGAAACTTC+AGG - chr2_1:59313527-59313546 None:intergenic 35.0%
GTTAATCATTTGTGACACAG+AGG - chr2_1:59313931-59313950 None:intergenic 35.0%
! TGAGACCAATATGCAGTTTT+TGG + chr2_1:59313987-59314006 Msa0214730:intron 35.0%
TTAAGAACTACCTAAGAGCA+TGG + chr2_1:59314152-59314171 Msa0214730:intron 35.0%
CAGAAATGGAAGGATAATGA+AGG - chr2_1:59314286-59314305 None:intergenic 35.0%
!! ATCAGATCCTCTTTTGGTTA+AGG + chr2_1:59314396-59314415 Msa0214730:intron 35.0%
TAGAAATTTCTTTGCAGCCT+TGG + chr2_1:59314554-59314573 Msa0214730:CDS 35.0%
ACTTTGACATAGAAGATGTG+AGG + chr2_1:59314647-59314666 Msa0214730:CDS 35.0%
CTTTGACATAGAAGATGTGA+GGG + chr2_1:59314648-59314667 Msa0214730:CDS 35.0%
TTTGACATAGAAGATGTGAG+GGG + chr2_1:59314649-59314668 Msa0214730:CDS 35.0%
TAAGCTTGTCAAAGTCAATC+GGG - chr2_1:59314726-59314745 None:intergenic 35.0%
CTAAGCTTGTCAAAGTCAAT+CGG - chr2_1:59314727-59314746 None:intergenic 35.0%
!! TGTCGGCACTTTTTATATCA+TGG + chr2_1:59314803-59314822 Msa0214730:intron 35.0%
TGTATGACACATGCTCTTAA+TGG - chr2_1:59314968-59314987 None:intergenic 35.0%
TCTGCTTTCTCATTTGTCAA+AGG + chr2_1:59315008-59315027 Msa0214730:CDS 35.0%
! ATTGTTTTCCAAGTGGAATC+TGG + chr2_1:59315045-59315064 Msa0214730:CDS 35.0%
! TTGTTTTCCAAGTGGAATCT+GGG + chr2_1:59315046-59315065 Msa0214730:CDS 35.0%
CAAATATTTGATTCATGGGG+TGG + chr2_1:59315081-59315100 Msa0214730:CDS 35.0%
! GTCAAAGCCTTATATCAAAG+AGG + chr2_1:59315134-59315153 Msa0214730:CDS 35.0%
TTTCTGAGCTCTGTATAGTT+AGG + chr2_1:59315281-59315300 Msa0214730:intron 35.0%
TCATTTGTGTCGTCATTCTA+TGG + chr2_1:59315958-59315977 Msa0214730:intron 35.0%
AGTCTCCACTAGAACATATA+TGG - chr2_1:59315990-59316009 None:intergenic 35.0%
AGTACAACGTGTTCAAATAG+TGG - chr2_1:59316096-59316115 None:intergenic 35.0%
GTATACGCTATAGCTGTATT+TGG - chr2_1:59316151-59316170 None:intergenic 35.0%
CAATTGTCATATAGTGGCTA+TGG - chr2_1:59316181-59316200 None:intergenic 35.0%
CTCATTATGTGGAATCATCA+AGG - chr2_1:59316239-59316258 None:intergenic 35.0%
CAGTCAGTTAAGCAAATACT+AGG - chr2_1:59316379-59316398 None:intergenic 35.0%
AACTGAAATTAGTGACACGA+AGG + chr2_1:59316402-59316421 Msa0214730:intron 35.0%
ACTGAAATTAGTGACACGAA+GGG + chr2_1:59316403-59316422 Msa0214730:intron 35.0%
TTGGTTTAATCAGTCAGACT+TGG + chr2_1:59316504-59316523 Msa0214730:intron 35.0%
TGGTTTAATCAGTCAGACTT+GGG + chr2_1:59316505-59316524 Msa0214730:intron 35.0%
! ATACAAAACTTTGGCCTTTC+TGG - chr2_1:59316539-59316558 None:intergenic 35.0%
CACCATGTCATACAAAACTT+TGG - chr2_1:59316548-59316567 None:intergenic 35.0%
AGATTAAGGATGTGTTGTCT+AGG - chr2_1:59316742-59316761 None:intergenic 35.0%
AGACAACACATCCTTAATCT+TGG + chr2_1:59316742-59316761 Msa0214730:CDS 35.0%
GACAACACATCCTTAATCTT+GGG + chr2_1:59316743-59316762 Msa0214730:CDS 35.0%
TAGCTGCATAAGAATCAAGA+AGG - chr2_1:59316953-59316972 None:intergenic 35.0%
GAATTTGTACATTGCTGTGT+CGG + chr2_1:59316990-59317009 Msa0214730:three_prime_UTR 35.0%
!! TTGACTTGTTCTGATGAAGT+TGG + chr2_1:59317134-59317153 Msa0214730:three_prime_UTR 35.0%
AAGTAGGTATGGTTTCCATG+AGG - chr2_1:59312064-59312083 None:intergenic 40.0%
! GAAAACCTGTTGATGGAAGT+AGG - chr2_1:59312080-59312099 None:intergenic 40.0%
AGTGAAGGAAAACCTGTTGA+TGG - chr2_1:59312087-59312106 None:intergenic 40.0%
!!! AGAGAGGGTTTTGGTTTGAA+AGG - chr2_1:59312242-59312261 None:intergenic 40.0%
AGAGCAAGTGAGAGTAAACT+TGG - chr2_1:59312273-59312292 None:intergenic 40.0%
AGTACCATTAGAAGATGAGG+CGG - chr2_1:59312297-59312316 None:intergenic 40.0%
!! GGAAGTACCATTAGAAGATG+AGG - chr2_1:59312300-59312319 None:intergenic 40.0%
! GAGAATTTTCATATGGGCCA+TGG + chr2_1:59312618-59312637 Msa0214730:intron 40.0%
! TTTGGGATATCTGTAAGTGG+AGG + chr2_1:59312714-59312733 Msa0214730:intron 40.0%
TGTTGCGAACCTTCATACTA+TGG + chr2_1:59313034-59313053 Msa0214730:intron 40.0%
! AAAACCATGCTTGTTGCTTG+AGG + chr2_1:59313095-59313114 Msa0214730:intron 40.0%
AAAACCTCAAGCAACAAGCA+TGG - chr2_1:59313102-59313121 None:intergenic 40.0%
GAGGTGAAACTTGAGTTTGT+AGG + chr2_1:59313138-59313157 Msa0214730:intron 40.0%
! GGGGAAAAAGGTGAACTTTT+TGG + chr2_1:59313228-59313247 Msa0214730:intron 40.0%
TGTGGAATACTTGAGGAACT+AGG + chr2_1:59313362-59313381 Msa0214730:intron 40.0%
TACTTGCCTAATTCTGGTGA+AGG + chr2_1:59313482-59313501 Msa0214730:intron 40.0%
AACACACCTTCACCAGAATT+AGG - chr2_1:59313491-59313510 None:intergenic 40.0%
!! GGTGAAGGTGTGTTTTCTTA+AGG + chr2_1:59313497-59313516 Msa0214730:intron 40.0%
GCATATGAGACAGAAATGGA+AGG - chr2_1:59314296-59314315 None:intergenic 40.0%
GTCTGCATATGAGACAGAAA+TGG - chr2_1:59314300-59314319 None:intergenic 40.0%
GAGAATCACTTAAGATCCTG+CGG + chr2_1:59314755-59314774 Msa0214730:CDS 40.0%
TCCCACAAAACCTAAAACAG+CGG - chr2_1:59314887-59314906 None:intergenic 40.0%
ATATACGTTGCCAATGTCCA+AGG - chr2_1:59314913-59314932 None:intergenic 40.0%
GACATTGGCAACGTATATAG+TGG + chr2_1:59314915-59314934 Msa0214730:CDS 40.0%
! TTGGCAACGTATATAGTGGA+AGG + chr2_1:59314919-59314938 Msa0214730:CDS 40.0%
! TGGCAACGTATATAGTGGAA+GGG + chr2_1:59314920-59314939 Msa0214730:CDS 40.0%
ATACAGCACCACACATTCTA+AGG + chr2_1:59314983-59315002 Msa0214730:CDS 40.0%
! TGTTTTCCAAGTGGAATCTG+GGG + chr2_1:59315047-59315066 Msa0214730:CDS 40.0%
CAAGACGAATCATAGAGACT+TGG - chr2_1:59315339-59315358 None:intergenic 40.0%
CAAGTCTCTATGATTCGTCT+TGG + chr2_1:59315337-59315356 Msa0214730:intron 40.0%
TCTCTATGATTCGTCTTGGT+TGG + chr2_1:59315341-59315360 Msa0214730:intron 40.0%
TATGATTCGTCTTGGTTGGT+TGG + chr2_1:59315345-59315364 Msa0214730:intron 40.0%
! GGCTTGGTAAATAATGTGAC+TGG + chr2_1:59315374-59315393 Msa0214730:intron 40.0%
AGCTCATTCGATATTAAGCG+TGG + chr2_1:59315471-59315490 Msa0214730:intron 40.0%
AAAGAACAAGTGGTGTGTCT+GGG - chr2_1:59315723-59315742 None:intergenic 40.0%
TAAAGAACAAGTGGTGTGTC+TGG - chr2_1:59315724-59315743 None:intergenic 40.0%
!! GACACTGGAGTTGATGTTAT+TGG + chr2_1:59315781-59315800 Msa0214730:CDS 40.0%
TTGATGTTATTGGACTCGAC+TGG + chr2_1:59315791-59315810 Msa0214730:CDS 40.0%
GCTGATGGAAGAAGAAGATT+AGG + chr2_1:59315826-59315845 Msa0214730:CDS 40.0%
GGAAGAAGAAGATTAGGTAG+CGG + chr2_1:59315832-59315851 Msa0214730:CDS 40.0%
GAAGAAGAAGATTAGGTAGC+GGG + chr2_1:59315833-59315852 Msa0214730:CDS 40.0%
GAGGAGAGAATAAAGAAGCA+GGG - chr2_1:59315882-59315901 None:intergenic 40.0%
AGAGGAGAGAATAAAGAAGC+AGG - chr2_1:59315883-59315902 None:intergenic 40.0%
GAAACTGATGTTTCATCACG+TGG + chr2_1:59316258-59316277 Msa0214730:intron 40.0%
GTGGTGATAAATGCATTACC+AGG + chr2_1:59316277-59316296 Msa0214730:intron 40.0%
CAGTTAAGCAAATACTAGGG+AGG - chr2_1:59316375-59316394 None:intergenic 40.0%
!! GGCCAAAGTTTTGTATGACA+TGG + chr2_1:59316543-59316562 Msa0214730:intron 40.0%
AAATGTGCTACAGCTTCTTC+CGG - chr2_1:59316790-59316809 None:intergenic 40.0%
CAGAAATGGCTTGAAATACC+AGG - chr2_1:59316912-59316931 None:intergenic 40.0%
CTGGTATTTCAAGCCATTTC+TGG + chr2_1:59316910-59316929 Msa0214730:three_prime_UTR 40.0%
AACCTGAACTCTTCCAGAAA+TGG - chr2_1:59316926-59316945 None:intergenic 40.0%
! GGCTATTGGTAGCAGTTAAG+AGG + chr2_1:59311968-59311987 Msa0214730:five_prime_UTR 45.0%
! CCTGTTGATGGAAGTAGGTA+TGG - chr2_1:59312075-59312094 None:intergenic 45.0%
CCATACCTACTTCCATCAAC+AGG + chr2_1:59312072-59312091 Msa0214730:CDS 45.0%
! AACTTGGTGAGAGTGAGAGA+GGG - chr2_1:59312257-59312276 None:intergenic 45.0%
! AAACTTGGTGAGAGTGAGAG+AGG - chr2_1:59312258-59312277 None:intergenic 45.0%
AGAACATGCCAATCTACCCA+TGG - chr2_1:59312638-59312657 None:intergenic 45.0%
TTTGTGACACAGAGGTGAGA+AGG - chr2_1:59313923-59313942 None:intergenic 45.0%
TTCTCGTCTGTATCTCAGCA+GGG - chr2_1:59314327-59314346 None:intergenic 45.0%
TTTCTCGTCTGTATCTCAGC+AGG - chr2_1:59314328-59314347 None:intergenic 45.0%
! TGCAGCCTTGGAATGCTTTT+AGG + chr2_1:59314566-59314585 Msa0214730:CDS 45.0%
!! TCAGGCCTAAAAGCATTCCA+AGG - chr2_1:59314574-59314593 None:intergenic 45.0%
! TGGAATGCTTTTAGGCCTGA+TGG + chr2_1:59314574-59314593 Msa0214730:CDS 45.0%
! CGTATCGGTGACTGTATAAC+AGG - chr2_1:59314676-59314695 None:intergenic 45.0%
! CAAATTTTACCTCTTGCCGC+AGG - chr2_1:59314774-59314793 None:intergenic 45.0%
CTGCGGCAAGAGGTAAAATT+TGG + chr2_1:59314772-59314791 Msa0214730:intron 45.0%
!!! TGCCGCTGTTTTAGGTTTTG+TGG + chr2_1:59314882-59314901 Msa0214730:CDS 45.0%
!!! GCCGCTGTTTTAGGTTTTGT+GGG + chr2_1:59314883-59314902 Msa0214730:CDS 45.0%
! GGCAACGTATATAGTGGAAG+GGG + chr2_1:59314921-59314940 Msa0214730:CDS 45.0%
! GCAACGTATATAGTGGAAGG+GGG + chr2_1:59314922-59314941 Msa0214730:CDS 45.0%
AGCAGAGTCCTTAGAATGTG+TGG - chr2_1:59314994-59315013 None:intergenic 45.0%
! ATTCGTCTTGGTTGGTTGGT+TGG + chr2_1:59315349-59315368 Msa0214730:intron 45.0%
TTAAGCGTGGTTGTGACTTC+AGG + chr2_1:59315484-59315503 Msa0214730:intron 45.0%
TAAGCGTGGTTGTGACTTCA+GGG + chr2_1:59315485-59315504 Msa0214730:intron 45.0%
TGTCTATCATACGCTCGAGA+AGG - chr2_1:59315765-59315784 None:intergenic 45.0%
!! AGAAGATTAGGTAGCGGGAT+TGG + chr2_1:59315838-59315857 Msa0214730:CDS 45.0%
TCTGCGATTGACAACTCAAG+TGG - chr2_1:59316016-59316035 None:intergenic 45.0%
GAGTTGTCAATCGCAGATCA+TGG + chr2_1:59316019-59316038 Msa0214730:intron 45.0%
ATATAGTGGCTATGGCGTAG+CGG - chr2_1:59316173-59316192 None:intergenic 45.0%
ATCATCAAGGAGAGTCGCTT+CGG - chr2_1:59316226-59316245 None:intergenic 45.0%
ATGCAGAAAGGACATTCGCT+AGG - chr2_1:59316308-59316327 None:intergenic 45.0%
GATACACGCATCTTAGACAC+TGG - chr2_1:59316347-59316366 None:intergenic 45.0%
! AACTTTGGCCTTTCTGGCAA+AGG - chr2_1:59316533-59316552 None:intergenic 45.0%
!! TTGTCACTTTCAGGGTTGTG+AGG + chr2_1:59316707-59316726 Msa0214730:intron 45.0%
CACATCCTTAATCTTGGGCA+TGG + chr2_1:59316748-59316767 Msa0214730:CDS 45.0%
GAACACCATGCCCAAGATTA+AGG - chr2_1:59316756-59316775 None:intergenic 45.0%
GGCAAAGTAAGTACAACAGG+TGG - chr2_1:59316891-59316910 None:intergenic 45.0%
CCAGGCAAAGTAAGTACAAC+AGG - chr2_1:59316894-59316913 None:intergenic 45.0%
CCTGTTGTACTTACTTTGCC+TGG + chr2_1:59316891-59316910 Msa0214730:three_prime_UTR 45.0%
! AGCCATTTCTGGAAGAGTTC+AGG + chr2_1:59316921-59316940 Msa0214730:three_prime_UTR 45.0%
GAGAGAGAGAGAGAGAGTGA+AGG - chr2_1:59312102-59312121 None:intergenic 50.0%
! GTGAGAGTGAGAGAGGGTTT+TGG - chr2_1:59312251-59312270 None:intergenic 50.0%
TCTGCCGCCTCATCTTCTAA+TGG + chr2_1:59312290-59312309 Msa0214730:CDS 50.0%
AGTACCCTAGCTACGATACG+AGG + chr2_1:59312502-59312521 Msa0214730:intron 50.0%
GTACCCTAGCTACGATACGA+GGG + chr2_1:59312503-59312522 Msa0214730:intron 50.0%
TACCCTAGCTACGATACGAG+GGG + chr2_1:59312504-59312523 Msa0214730:intron 50.0%
CATATGGGCCATGGGTAGAT+TGG + chr2_1:59312627-59312646 Msa0214730:intron 50.0%
CTCGCAGCCTTAACCAAAAG+AGG - chr2_1:59314406-59314425 None:intergenic 50.0%
!! CTTTTGGTTAAGGCTGCGAG+AGG + chr2_1:59314406-59314425 Msa0214730:CDS 50.0%
AGATCCAGTTAGTCGTCCTC+CGG + chr2_1:59314429-59314448 Msa0214730:CDS 50.0%
TAGCCATGTACCTTCCTGCT+TGG - chr2_1:59314468-59314487 None:intergenic 50.0%
AACATCCATCCTTCCGAGAG+AGG + chr2_1:59314509-59314528 Msa0214730:CDS 50.0%
CTTACACCTCTACCTGCGTT+CGG + chr2_1:59314619-59314638 Msa0214730:CDS 50.0%
TTACACCTCTACCTGCGTTC+GGG + chr2_1:59314620-59314639 Msa0214730:CDS 50.0%
AATCCCTCCTCAGAGCGTAT+CGG - chr2_1:59314691-59314710 None:intergenic 50.0%
!! ACGCTCTGAGGAGGGATTAA+AGG + chr2_1:59314693-59314712 Msa0214730:CDS 50.0%
ACTTAAGATCCTGCGGCAAG+AGG + chr2_1:59314762-59314781 Msa0214730:CDS 50.0%
!!! TAGGTTTTGTGGGAGCACCT+TGG + chr2_1:59314893-59314912 Msa0214730:CDS 50.0%
ACAACTGCCGCCTCATATGT+GGG + chr2_1:59315104-59315123 Msa0214730:CDS 50.0%
CAGAGTTCCCACATATGAGG+CGG - chr2_1:59315114-59315133 None:intergenic 50.0%
GACCAGAGTTCCCACATATG+AGG - chr2_1:59315117-59315136 None:intergenic 50.0%
CTCGAGCGTATGATAGACAC+TGG + chr2_1:59315766-59315785 Msa0214730:CDS 50.0%
TATTGGACTCGACTGGACAG+TGG + chr2_1:59315798-59315817 Msa0214730:CDS 50.0%
ACTCGACTGGACAGTGGATA+TGG + chr2_1:59315804-59315823 Msa0214730:CDS 50.0%
TGGACAGTGGATATGGCTGA+TGG + chr2_1:59315811-59315830 Msa0214730:CDS 50.0%
GATTGGTGTGCAAGGAAACG+TGG + chr2_1:59315855-59315874 Msa0214730:CDS 50.0%
GACATTCGCTAGGAAGATCC+TGG - chr2_1:59316298-59316317 None:intergenic 50.0%
CTTGGGCATGGTGTTCTTGT+TGG + chr2_1:59316760-59316779 Msa0214730:CDS 50.0%
TGGTGTTCTTGTTGGCACAC+CGG + chr2_1:59316768-59316787 Msa0214730:CDS 50.0%
CACATTTCTTTGACGTCGCG+AGG + chr2_1:59316803-59316822 Msa0214730:CDS 50.0%
TCTGACCTCTCTCGGAAGGA+TGG - chr2_1:59314517-59314536 None:intergenic 55.0%
CAGTCGTCTCTGACCTCTCT+CGG - chr2_1:59314525-59314544 None:intergenic 55.0%
! CGAACGCAGGTAGAGGTGTA+AGG - chr2_1:59314621-59314640 None:intergenic 55.0%
TCAAAGTCGATCCCGAACGC+AGG - chr2_1:59314634-59314653 None:intergenic 55.0%
ACAGTCACCGATACGCTCTG+AGG + chr2_1:59314681-59314700 Msa0214730:CDS 55.0%
!! TCACCGATACGCTCTGAGGA+GGG + chr2_1:59314685-59314704 Msa0214730:CDS 55.0%
!! GGTGGTGATGCCGCTGTTTT+AGG + chr2_1:59314874-59314893 Msa0214730:CDS 55.0%
!! TGTGGGAGCACCTTGGACAT+TGG + chr2_1:59314900-59314919 Msa0214730:CDS 55.0%
AGTGAGCCCCAGATTCCACT+TGG - chr2_1:59315056-59315075 None:intergenic 55.0%
GACAACTGCCGCCTCATATG+TGG + chr2_1:59315103-59315122 Msa0214730:CDS 55.0%
CGCCTCATATGTGGGAACTC+TGG + chr2_1:59315112-59315131 Msa0214730:CDS 55.0%
! GTCTTGGTTGGTTGGTTGGC+TGG + chr2_1:59315353-59315372 Msa0214730:intron 55.0%
CTTGGGTGCCTTTGCCAGAA+AGG + chr2_1:59316522-59316541 Msa0214730:intron 55.0%
TTCAGGGTTGTGAGGTCTGC+AGG + chr2_1:59316715-59316734 Msa0214730:intron 55.0%
TCAGGGTTGTGAGGTCTGCA+GGG + chr2_1:59316716-59316735 Msa0214730:intron 55.0%
GGCCCCTCGTATCGTAGCTA+GGG - chr2_1:59312509-59312528 None:intergenic 60.0%
TGGCCCCTCGTATCGTAGCT+AGG - chr2_1:59312510-59312529 None:intergenic 60.0%
ACGATACGAGGGGCCACTCT+TGG + chr2_1:59312514-59312533 Msa0214730:intron 60.0%
CATGCCGGAGGACGACTAAC+TGG - chr2_1:59314436-59314455 None:intergenic 60.0%
CAGTTAGTCGTCCTCCGGCA+TGG + chr2_1:59314434-59314453 Msa0214730:CDS 60.0%
GCTTGGCGCATCATCCATGC+CGG - chr2_1:59314451-59314470 None:intergenic 60.0%
GCATGGATGATGCGCCAAGC+AGG + chr2_1:59314451-59314470 Msa0214730:CDS 60.0%
GGATGATGCGCCAAGCAGGA+AGG + chr2_1:59314455-59314474 Msa0214730:CDS 60.0%
! GCGCCAAGCAGGAAGGTACA+TGG + chr2_1:59314462-59314481 Msa0214730:CDS 60.0%
CGTCTCTGACCTCTCTCGGA+AGG - chr2_1:59314521-59314540 None:intergenic 60.0%
TCGATCCCGAACGCAGGTAG+AGG - chr2_1:59314628-59314647 None:intergenic 60.0%
!! GTCACCGATACGCTCTGAGG+AGG + chr2_1:59314684-59314703 Msa0214730:CDS 60.0%
! GGTTGGTTGGTTGGCTGGCT+TGG + chr2_1:59315358-59315377 Msa0214730:intron 60.0%
!! GGTAGCGGGATTGGTGTGCA+AGG + chr2_1:59315847-59315866 Msa0214730:CDS 60.0%
TGGCGCATCATCCATGCCGG+AGG - chr2_1:59314448-59314467 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 59311916 59317168 59311916 ID=Msa0214730;Name=Msa0214730
chr2_1 mRNA 59311916 59317168 59311916 ID=Msa0214730-mRNA-1;Parent=Msa0214730;Name=Msa0214730-mRNA-1;_AED=0.05;_eAED=0.05;_QI=149|1|1|1|1|1|6|292|408
chr2_1 exon 59311916 59312093 59311916 ID=Msa0214730-mRNA-1:exon:16321;Parent=Msa0214730-mRNA-1
chr2_1 exon 59312175 59312311 59312175 ID=Msa0214730-mRNA-1:exon:16322;Parent=Msa0214730-mRNA-1
chr2_1 exon 59314401 59314783 59314401 ID=Msa0214730-mRNA-1:exon:16323;Parent=Msa0214730-mRNA-1
chr2_1 exon 59314871 59315155 59314871 ID=Msa0214730-mRNA-1:exon:16324;Parent=Msa0214730-mRNA-1
chr2_1 exon 59315694 59315929 59315694 ID=Msa0214730-mRNA-1:exon:16325;Parent=Msa0214730-mRNA-1
chr2_1 exon 59316720 59317168 59316720 ID=Msa0214730-mRNA-1:exon:16326;Parent=Msa0214730-mRNA-1
chr2_1 five_prime_UTR 59311916 59312064 59311916 ID=Msa0214730-mRNA-1:five_prime_utr;Parent=Msa0214730-mRNA-1
chr2_1 CDS 59312065 59312093 59312065 ID=Msa0214730-mRNA-1:cds;Parent=Msa0214730-mRNA-1
chr2_1 CDS 59312175 59312311 59312175 ID=Msa0214730-mRNA-1:cds;Parent=Msa0214730-mRNA-1
chr2_1 CDS 59314401 59314783 59314401 ID=Msa0214730-mRNA-1:cds;Parent=Msa0214730-mRNA-1
chr2_1 CDS 59314871 59315155 59314871 ID=Msa0214730-mRNA-1:cds;Parent=Msa0214730-mRNA-1
chr2_1 CDS 59315694 59315929 59315694 ID=Msa0214730-mRNA-1:cds;Parent=Msa0214730-mRNA-1
chr2_1 CDS 59316720 59316876 59316720 ID=Msa0214730-mRNA-1:cds;Parent=Msa0214730-mRNA-1
chr2_1 three_prime_UTR 59316877 59317168 59316877 ID=Msa0214730-mRNA-1:three_prime_utr;Parent=Msa0214730-mRNA-1
Gene Sequence

>Msa0214730

ATGGAAACCATACCTACTTCCATCAACAGTGGTTTAGGATGGAAATCATCTTCCTTGTTTCAACAATCCAATTGCTTCAACCTTCTTTCTTCTCCTTTCAAACCAAAACCCTCTCTCACTCTCACCAAGTTTACTCTCACTTGCTCTGCCGCCTCATCTTCTAATGATCCTCTTTTGGTTAAGGCTGCGAGAGGAGATCCAGTTAGTCGTCCTCCGGCATGGATGATGCGCCAAGCAGGAAGGTACATGGCTATTTACAGAAAGTTAGCTGAGAAACATCCATCCTTCCGAGAGAGGTCAGAGACGACTGATCTCATTGTAGAAATTTCTTTGCAGCCTTGGAATGCTTTTAGGCCTGATGGAGTAATTATTTTCTCTGACATCCTTACACCTCTACCTGCGTTCGGGATCGACTTTGACATAGAAGATGTGAGGGGACCTGTTATACAGTCACCGATACGCTCTGAGGAGGGATTAAAGGTTTTACACCCGATTGACTTTGACAAGCTTAGATTTGTAGGAGAATCACTTAAGATCCTGCGGCAAGAGGTTGGTGGTGATGCCGCTGTTTTAGGTTTTGTGGGAGCACCTTGGACATTGGCAACGTATATAGTGGAAGGGGGTACAACGCGTACATATACAACCATTAAGAGCATGTGTCATACAGCACCACACATTCTAAGGACTCTGCTTTCTCATTTGTCAAAGGCGATAGCAGATTACATTGTTTTCCAAGTGGAATCTGGGGCTCACTGCATACAAATATTTGATTCATGGGGTGGACAACTGCCGCCTCATATGTGGGAACTCTGGTCAAAGCCTTATATCAAAGAGATTGTAAATTTGGTCAAGAAAAAGTGCCCAGACACACCACTTGTTCTTTATATAAATGGAAATGGTGGCCTTCTCGAGCGTATGATAGACACTGGAGTTGATGTTATTGGACTCGACTGGACAGTGGATATGGCTGATGGAAGAAGAAGATTAGGTAGCGGGATTGGTGTGCAAGGAAACGTGGACCCTGCTTCTTTATTCTCTCCTCTTACTGCCCTAACAGAAGAAATTCAGAGGGTTGTGAGGTCTGCAGGGCCTAGACAACACATCCTTAATCTTGGGCATGGTGTTCTTGTTGGCACACCGGAAGAAGCTGTAGCACATTTCTTTGACGTCGCGAGGAGCTTGAAGTTTGACACAGTCTCTCAAAATAACACTGCAAATGTAGCTTAA

Protein sequence

>Msa0214730

METIPTSINSGLGWKSSSLFQQSNCFNLLSSPFKPKPSLTLTKFTLTCSAASSSNDPLLVKAARGDPVSRPPAWMMRQAGRYMAIYRKLAEKHPSFRERSETTDLIVEISLQPWNAFRPDGVIIFSDILTPLPAFGIDFDIEDVRGPVIQSPIRSEEGLKVLHPIDFDKLRFVGESLKILRQEVGGDAAVLGFVGAPWTLATYIVEGGTTRTYTTIKSMCHTAPHILRTLLSHLSKAIADYIVFQVESGAHCIQIFDSWGGQLPPHMWELWSKPYIKEIVNLVKKKCPDTPLVLYINGNGGLLERMIDTGVDVIGLDWTVDMADGRRRLGSGIGVQGNVDPASLFSPLTALTEEIQRVVRSAGPRQHILNLGHGVLVGTPEEAVAHFFDVARSLKFDTVSQNNTANVA*